Citrus Sinensis ID: 000702
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1343 | 2.2.26 [Sep-21-2011] | |||||||
| Q7GB25 | 1514 | ABC transporter C family | yes | no | 0.975 | 0.865 | 0.852 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.967 | 0.857 | 0.545 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.947 | 0.844 | 0.541 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.943 | 0.864 | 0.525 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.930 | 0.837 | 0.521 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.776 | 0.990 | 0.55 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.921 | 0.852 | 0.452 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.944 | 0.866 | 0.455 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.950 | 0.829 | 0.447 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.936 | 0.829 | 0.449 | 0.0 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 2315 bits (6000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1118/1312 (85%), Positives = 1219/1312 (92%), Gaps = 2/1312 (0%)
Query: 34 LQVCRNS-DLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIP 92
+QV R+S DLQEPLL+EEEA CLKVTPY AGL SL+TLSWL+PLLS G+KRPLELKDIP
Sbjct: 203 IQVTRSSSDLQEPLLVEEEAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIP 262
Query: 93 LLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSY 152
LLAP+DRAK++YK L SNW++ K+ENP+K PSLA AI+KSFWKEAA NAVFAGLNT+VSY
Sbjct: 263 LLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSY 322
Query: 153 VGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALT 212
VGPYL+SYFVDYLGGKE FPHEGY+LAGIFF++KL+ET+TTRQWY+GVDILGMHVRSALT
Sbjct: 323 VGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALT 382
Query: 213 AMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYK 272
AMVYRKGLKLSS+AKQ+HTSGEIVNYMAVDVQR+GDYSWYLHDIWMLP+QI+LALAILYK
Sbjct: 383 AMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYK 442
Query: 273 NVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAW 332
+VGIA+VATL+ATIISI+VT+P+AKVQE+YQDKLM AKDERMRKTSECLRNMR+LKLQAW
Sbjct: 443 SVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAW 502
Query: 333 EDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSV 392
EDRYR++LEEMR E+ WLRKALYSQAF+TFIFWSSPIFVAAVTF TSI LG QLTAG V
Sbjct: 503 EDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGV 562
Query: 393 LSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAI 452
LSA+ATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT+V+PRG++N+AI
Sbjct: 563 LSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAI 622
Query: 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
+I++ FCW P SSRPTLSGI MKV++GMRVAVCG VGSGKSS +SCILGEIPKISGEVR
Sbjct: 623 EIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVR 682
Query: 513 LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
+CGT YVSQSAWIQSGNIEENILFGSPM+K KYK VI ACSLKKD+ELFSHGDQTIIG+
Sbjct: 683 ICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGE 742
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632
RGINLSGGQKQRVQLARALYQDADIYLLDDPFSA+DAHTGS+LF++YI++ALA KTV+FV
Sbjct: 743 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFV 802
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSED 692
THQVEFLPAAD ILVLKEGRIIQ+GKYDDLLQAGTDF ALVSAHHEAIEAMDIP+ SSED
Sbjct: 803 THQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSED 862
Query: 693 SDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASE-QKAIKEKKKAKRSRKKQLVQ 751
SDEN D V+ K D ++I+ LAKEVQ+G SAS+ + ++KKKAKRSRKKQLVQ
Sbjct: 863 SDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQ 922
Query: 752 EEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811
EEERV+G+VSMKVYLSYM AAY+G LIPLIILAQ FQFLQIASNWWMAWANPQTEGD+
Sbjct: 923 EEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDES 982
Query: 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTP 871
KV+P +LL+VY ALAFGSS FIFVRA LVATFGLAAAQKLF+ MLRSVFRAPMSFFDSTP
Sbjct: 983 KVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTP 1042
Query: 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLW 931
AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL GI+ VMT VTWQV LLV+P+AVAC W
Sbjct: 1043 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFW 1102
Query: 932 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 991
MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRF+KRNLYLLDCF RP
Sbjct: 1103 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRP 1162
Query: 992 FFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051
FFCS+AAIEWLCLRMELLST VFAFCMVLLVSFPHG IDPSMAGLAVTYGLNLN RLSRW
Sbjct: 1163 FFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRW 1222
Query: 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLP 1111
ILSFCKLENKIISIERIYQYSQI GEAP +IED RPPSSWP GTIEL+D+KVRY ENLP
Sbjct: 1223 ILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLP 1282
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
VLHG++C FPGGKKIGIVGRTGSGKSTLIQALFRLIEP G+I IDNIDIS IGLHDLR
Sbjct: 1283 TVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLR 1342
Query: 1172 SRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
SRLGIIPQDP LFEGTIR NLDPLEEHSD +IWEALDKSQLGD+VRGKD KL++PVLENG
Sbjct: 1343 SRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENG 1402
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
DNWSVGQRQLVSLGRALLKQA+ILVLDEATASVDTATDNLIQKIIRTEF+DCTVCTIAHR
Sbjct: 1403 DNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHR 1462
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
IPTVIDSDLVLVLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRS+GIP+
Sbjct: 1463 IPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRSTGIPEL 1514
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/1334 (54%), Positives = 950/1334 (71%), Gaps = 35/1334 (2%)
Query: 28 LGVLLVLQVCR---NSDLQEPLL--------------LEEEAGCLKVTPYGDAGLFSLVT 70
LG + VL+ R N L+EPLL L + G + TPY AG+ SL+T
Sbjct: 197 LGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLT 256
Query: 71 LSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLAL--A 128
SW++PL+ IG K+ L+L+D+P L D S E + + L A
Sbjct: 257 FSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKA 316
Query: 129 ILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLV 188
+ + E + A FA + T+ SYVGP L+ FV YL G+ + HEGY+L FF+AK+V
Sbjct: 317 LYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIV 376
Query: 189 ETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGD 248
E ++ R W+ + +G+ +RSAL AM+Y KGL LS +KQ TSGEI+N+M VD +R+G+
Sbjct: 377 ECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGN 436
Query: 249 YSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMA 308
+SWY+HD WM+ LQ+ LAL ILY+N+G+AS+A L+ATII +++ P ++QE +Q+KLM
Sbjct: 437 FSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLME 496
Query: 309 AKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSS 368
AKD RM+ TSE LRNMRILKLQ WE ++ ++ ++R E WL+K +Y+ A I+F+FW +
Sbjct: 497 AKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGA 556
Query: 369 PIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISG 428
P V+ TFG ILLG L +G +LSA+ATFRILQEP+ N PD +SM+ QTKVSLDR++
Sbjct: 557 PTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLAS 616
Query: 429 FLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGM 488
+L + LQ D LP+G ++VA+++ N+ W SSS PTL I+ KV GM+VAVCG
Sbjct: 617 YLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGT 676
Query: 489 VGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKK 548
VGSGKSSLLS +LGE+PK+SG +++CGT AYV+QS WIQSG IE+NILFG PM++ +Y K
Sbjct: 677 VGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDK 736
Query: 549 VIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD 608
V+ ACSL KDLE+ S GDQT+IG+RGINLSGGQKQR+Q+ARALYQDADIYL DDPFSAVD
Sbjct: 737 VLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 796
Query: 609 AHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
AHTGS LFKE ++ L +K+VI+VTHQVEFLPAAD ILV+K+GRI QAGKY+D+L +GTD
Sbjct: 797 AHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTD 856
Query: 669 FNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSS 728
F L+ AH EA+ +D + +S L + ++ K A + +
Sbjct: 857 FMELIGAHQEALAVVDSVDANSVSEKSALGQENVIV--KDAIAVDEKL------------ 902
Query: 729 ASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLF 788
E + +K K ++Q++QEEER +G V++ VY Y+ AY G L+P I+L QVLF
Sbjct: 903 --ESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLF 960
Query: 789 QFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAA 848
Q LQI SN+WMAWA P +E Q V L++VY+ALAFGSS I +RA L+ T G A
Sbjct: 961 QLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTA 1020
Query: 849 QKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGII 908
+LF KM +FR+PMSFFDSTP+GRI++R S DQS VDL++P++ G A T IQL+GII
Sbjct: 1021 TELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGII 1080
Query: 909 GVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTI 968
GVM+ V+W V L+ IP+ A +W Q+YY+A++REL R+V + K+P+I F E+I+GA+TI
Sbjct: 1081 GVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTI 1140
Query: 969 RGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGA 1028
R F QE RF N+ L D ++RP F + A+EWLC R+++LS+ F F +V LVS P G
Sbjct: 1141 RSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGV 1200
Query: 1029 IDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPP 1088
IDPS+AGLAVTYGL+LN + I + C LENKIIS+ERI QY+ +P E P VIE +RP
Sbjct: 1201 IDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPE 1260
Query: 1089 SSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148
SWP G +E+ DL+VRY ++PLVL GITC F GG + GIVGRTGSGKSTLIQ LFR++
Sbjct: 1261 QSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIV 1320
Query: 1149 EPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALD 1208
EP+ G I ID ++I TIGLHDLR RL IIPQDP +FEGT+R NLDPLEE++D +IWEALD
Sbjct: 1321 EPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALD 1380
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
K QLGD VR K+QKL++ V ENGDNWS+GQRQLV LGR LLK+++ILVLDEATASVDTAT
Sbjct: 1381 KCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTAT 1440
Query: 1269 DNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328
DNLIQK +R F DCTV TIAHRI +VIDSD+VL+LS+G + E+DTP RLLEDKSS F K
Sbjct: 1441 DNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSK 1500
Query: 1329 LVTEYSSRSSGIPD 1342
LV EY+SRSS D
Sbjct: 1501 LVAEYTSRSSSSFD 1514
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1413 bits (3658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1305 (54%), Positives = 947/1305 (72%), Gaps = 33/1305 (2%)
Query: 44 EPLLLEEEAGCLK------VTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPK 97
EPLLL ++ K +PYG+A LF +T SW+NPL S+G KRPLE D+P + K
Sbjct: 215 EPLLLGDQTEQNKKDSYSSSSPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVK 274
Query: 98 DRAKTNYKALNSNWEKLKAENPTKTPSLAL---AILKSFWKEAALNAVFAGLNTIVSYVG 154
D A+ A + +KLK + P A ++L+ W++AA+NAVFA +N +Y+G
Sbjct: 275 DSARFCSHAFD---QKLKTTKEKEGPGNAFFYNSVLRYVWRKAAINAVFAVVNASTAYIG 331
Query: 155 PYLVSYFVDYLGGKETFP-HEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
PYL++ FV++L K++ + GY+LA F +AK+VET+T RQW G LG+ +R+AL +
Sbjct: 332 PYLINDFVEFLSEKQSQSLNHGYLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALIS 391
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
+Y+KGL LSS ++QSHTSGEI+NYM+VDVQR+ D+ WY+++IWMLP+QI A+ IL K+
Sbjct: 392 HIYQKGLVLSSQSRQSHTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKH 451
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
+G+ ++A L+ T++ + P+ ++Q YQ +M AKD+RM+ TSE L+NM+ILKLQAW+
Sbjct: 452 LGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWD 511
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
+++ +++ +R E+ L K+L QAF TFI W +P ++ VTF T +L+G +LTAG+VL
Sbjct: 512 NQFLNKVKTLRKKEYDCLWKSLRLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVL 571
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
SA+ATF++LQ P+ PDL+S + Q+KVS DRI+ +LQ+ E Q+DA + T ++++
Sbjct: 572 SALATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVE 631
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513
IEN F W P SSRPTL I +KV GM+VAVCG VGSGKSSLLS ILGEI K+ G VR+
Sbjct: 632 IENGAFSWEPESSRPTLDDIELKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGTVRV 691
Query: 514 CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
G AYV QS WI SG I +NILFGS + KY++ + AC+L KD ELFS+GD T IG+R
Sbjct: 692 SGKQAYVPQSPWILSGTIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGER 751
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
GIN+SGGQKQR+Q+ARA+YQ+ADIYLLDDPFSAVDAHTG ELF++ +M L +KTV++VT
Sbjct: 752 GINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVT 811
Query: 634 HQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDS 693
HQVEFLPAAD ILV++ GR++QAGK+++LL+ F LV AH+EA++++ S E S
Sbjct: 812 HQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIGFEVLVGAHNEALDSI----LSIEKS 867
Query: 694 DENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEE 753
N + S D+ ++A+ +Q + + + KKK + +LVQ+E
Sbjct: 868 SRNFK-----------EGSKDDTASIAESLQTHCDSEHNISTENKKK-----EAKLVQDE 911
Query: 754 ERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813
E +G + +VYL+Y+ GLL+P IILAQ FQ LQIASN+WMAW P T PK+
Sbjct: 912 ETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKL 971
Query: 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAG 873
+L+VY LA GSS + R +LVA GL+ A+ F +ML S+FRAPMSFFDSTP G
Sbjct: 972 GMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTG 1031
Query: 874 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQ 933
RILNR S DQSV+DL++ +LG A + IQ+VG I VM+ V WQV ++ IP+AVAC++ Q
Sbjct: 1032 RILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQ 1091
Query: 934 KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF 993
+YY ++REL R+ ++++PI+H F ES+AGA+TIR F Q RF+ NL L+D +RP+F
Sbjct: 1092 RYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWF 1151
Query: 994 CSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
+A+EWL R+ LLS FVFAF +VLLV+ P G I+PS+AGL VTYGL+LN + I
Sbjct: 1152 HVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIW 1211
Query: 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV 1113
+ C ENK+IS+ERI QYS+IP EAP VI+ RP +WP G+I DL+VRY E+ P V
Sbjct: 1212 NICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAV 1271
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173
L ITC FPGGKKIG+VGRTGSGKSTLIQALFR++EP+ G I+IDN+DI+ IGLHDLRSR
Sbjct: 1272 LKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSR 1331
Query: 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
LGIIPQDP LF+GTIR NLDPL +++D EIWEA+DK QLGD++R KD++L+ V+ENG+N
Sbjct: 1332 LGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGEN 1391
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
WSVGQRQLV LGR LLK++ ILVLDEATASVD+ATD +IQKII EFKD TV TIAHRI
Sbjct: 1392 WSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIH 1451
Query: 1294 TVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSS 1338
TVI+SDLVLVLSDGR+AEFD+P +LL+ + S F KL+ EYS RS+
Sbjct: 1452 TVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSN 1496
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1368 bits (3541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/1300 (52%), Positives = 905/1300 (69%), Gaps = 33/1300 (2%)
Query: 42 LQEPLLLEEEAGCLK--VTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDR 99
L+EPLL E+ + P+ AG+ S ++ SW++PL+++G ++ +++KD+P L D
Sbjct: 189 LKEPLLSSAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDT 248
Query: 100 AKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVS 159
++ + S E E T L A+ S W++ L+A+ A + T+ YV PYL+
Sbjct: 249 TESLFWIFRSKLEWDDGERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMD 308
Query: 160 YFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKG 219
FV YL G + ++GY+L FF AKLVE T RQW+ G+ +RS L +M+Y KG
Sbjct: 309 NFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKG 368
Query: 220 LKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASV 279
L L +KQ HTSGEI+N MAVD R+ +SW++HD W+L LQ+ LAL ILYK++G+ S+
Sbjct: 369 LTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSI 428
Query: 280 ATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQ 339
A ATI+ ++ P AK++E++Q LM +KD RM+KTSE L NM+ILKLQ WE ++ +
Sbjct: 429 AAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSK 488
Query: 340 LEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATF 399
+ E+R +E WL+K +Y+ + I + W++P F++A FG +LL L +G +L+A+ATF
Sbjct: 489 ILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATF 548
Query: 400 RILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEF 459
RILQ P+ P+ +SM+ QTKVSL+RI+ FL ++LQ+D LP G + +A++I N F
Sbjct: 549 RILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTF 608
Query: 460 CWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAY 519
W SS PTL ++ KV +GM VA+CG VGSGKSSLLS ILGE+PKISG +++CG AY
Sbjct: 609 SWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAY 668
Query: 520 VSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSG 579
++QS WIQSG +EENILFG PM++ Y +V+ ACSL KDLE+ DQT+IG+RGINLSG
Sbjct: 669 IAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSG 728
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFL 639
GQKQR+Q+ARALYQDADIYL DDPFSAVDAHTGS LFKE ++ L +KTVI+VTHQVEFL
Sbjct: 729 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFL 788
Query: 640 PAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTL 699
P AD ILV+K+G+I QAGKY ++L +GTDF LV AH EA+ +D
Sbjct: 789 PEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEALATID--------------- 833
Query: 700 DGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKK--QLVQEEERVR 757
C+ AS + + EV KEK++ K QLVQEEER +
Sbjct: 834 -----SCETGYASEKSTTDKENEVLHH---------KEKQENGSDNKPSGQLVQEEEREK 879
Query: 758 GRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMV 817
G+V VY YMA AY G +IPLI++ QVLFQ L I SN+WM W P ++ +P V+
Sbjct: 880 GKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFT 939
Query: 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILN 877
L++VY+ LA SS+ I +RA+LVA G A +LF +M +FRA MSFFD+TP GRILN
Sbjct: 940 LILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILN 999
Query: 878 RVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYM 937
R S DQSV DL +P + A I ++GIIGV+ V WQVL++ IP+ AC W ++YY+
Sbjct: 1000 RASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYI 1059
Query: 938 ASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLA 997
+++REL R+ I +SP++H F E+++G +TIR F QE RF + L DC++R F S
Sbjct: 1060 SAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTG 1119
Query: 998 AIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCK 1057
A+EWLC R+ELLSTF FA +V+LVS P G I+PS+AGLA+TY LNLN + I + C
Sbjct: 1120 AMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCD 1179
Query: 1058 LENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGI 1117
LENK+IS+ER+ QY+ IP E P VIE +RP SWP G I + +L+VRYG +LP+VLHG+
Sbjct: 1180 LENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGL 1239
Query: 1118 TCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177
TC FPGG K GIVGRTG GKSTLIQ LFR++EPA G I ID I+I +IGLHDLRSRL II
Sbjct: 1240 TCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSII 1299
Query: 1178 PQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237
PQDP +FEGTIR NLDPLEE++D +IWEALD QLGD VR K+ KL++PV ENG NWSVG
Sbjct: 1300 PQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVG 1359
Query: 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID 1297
QRQLV LGR LLK++++LVLDEATAS+DTATDNLIQ+ +R F DCTV TIAHRI +VID
Sbjct: 1360 QRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVID 1419
Query: 1298 SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRS 1337
SD+VL+L G + E D+P RLLED+SS+F KLV EY++ S
Sbjct: 1420 SDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSS 1459
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1348 bits (3488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/1284 (52%), Positives = 896/1284 (69%), Gaps = 34/1284 (2%)
Query: 57 VTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKA 116
VTP+ +AG S V+ SW++PL+ +G ++ ++ +D+P + DRA+ + S E
Sbjct: 229 VTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDG 288
Query: 117 ENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGY 176
E T L A+ S W++ L+ +FA + T+ YV PYL+ FV YL G+ + ++G
Sbjct: 289 ERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGV 348
Query: 177 ILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIV 236
+L FF AKLVE R WY + G+ +RS L +M+Y KGL L +KQ HTSGEI+
Sbjct: 349 VLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEII 408
Query: 237 NYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVA 296
N M VD +R+ +SWY+HD W+L LQI LAL ILY+++G+ S+A AT + ++ +P+A
Sbjct: 409 NLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLA 468
Query: 297 KVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALY 356
K++E++Q LM +KD RM+KTSE L NMRILKLQ WE ++ ++ ++RG+E WL+K +Y
Sbjct: 469 KLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVY 528
Query: 357 SQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMM 416
+ A I+ + W++P FV+A FG +LL L +G +++A+ATFRILQ P+ PD +SM+
Sbjct: 529 NSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMI 588
Query: 417 AQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMK 476
QTKVSLDRI+ FL ++LQ+D LP G + + +++ N F W SS PTL I K
Sbjct: 589 VQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFK 648
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENIL 536
+ GM +A+CG VGSGKSSLLS ILGE+PKISG +++CG AY++QS WIQSG +EENIL
Sbjct: 649 IPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENIL 708
Query: 537 FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596
FG PM + Y++V+ ACSL KDLE+F DQT+IG+RGINLSGGQKQR+Q+ARALYQDAD
Sbjct: 709 FGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDAD 768
Query: 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQA 656
IYL DDPFSAVDAHTGS LFKE ++ L NKTVI+VTHQ+EFLP AD ILV+K+GRI QA
Sbjct: 769 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQA 828
Query: 657 GKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNI 716
GKY+++L++GTDF LV AH +A+ A+D +K AS +
Sbjct: 829 GKYNEILESGTDFMELVGAHTDALAAVD--------------------SYEKGSASAQS- 867
Query: 717 DNLAKEVQDGSSASEQKAIKEKKKAKR---SRKKQLVQEEERVRGRVSMKVYLSYMAAAY 773
+++ E K +++K + S K QLVQEEER +G+V VY YM AY
Sbjct: 868 ----------TTSKESKVSNDEEKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAY 917
Query: 774 RGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFI 833
G L+P+I++ Q+LFQ L I SN+WMAW P ++ +P V+ L++VY+ LA SS+ I
Sbjct: 918 GGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCI 977
Query: 834 FVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFR 893
VRA+L A G A +LF +M +FRA MSFFD+TP GRILNR S DQS VDL +P +
Sbjct: 978 LVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQ 1037
Query: 894 LGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSP 953
A + ++GIIGVM V WQVL++ IP+ AC W ++YY++++REL R+ I +SP
Sbjct: 1038 FSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSP 1097
Query: 954 IIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFV 1013
++ F E+++G +TIR F QE RF + L DC++R F +++A+EWLC R++LLST
Sbjct: 1098 LVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVA 1157
Query: 1014 FAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQ 1073
FA +V+LVS P G I+PS AGLAVTY LNLN+ + I + C LENK+IS+ER+ QY
Sbjct: 1158 FALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYID 1217
Query: 1074 IPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRT 1133
IP E VIE +RP SWP G I + +L+VRYG +LP+VL G+TC F GG K GIVGRT
Sbjct: 1218 IPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRT 1277
Query: 1134 GSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD 1193
G GKSTLIQ LFR++EPA G I ID I+I TIGLHDLRSRL IIPQ+P +FEGT+R NLD
Sbjct: 1278 GCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLD 1337
Query: 1194 PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253
PLEE++D +IWEALDK QLGD +R K+ KL++PV ENG NWSVGQRQLV LGR LLK+++
Sbjct: 1338 PLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSK 1397
Query: 1254 ILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD 1313
+L+LDEATASVDTATD LIQ+ +R F CTV TIAHRI +VIDSD+VL+L G + E D
Sbjct: 1398 VLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHD 1457
Query: 1314 TPGRLLEDKSSMFLKLVTEYSSRS 1337
+P RLLEDKSS F KLV EY++ S
Sbjct: 1458 SPARLLEDKSSSFSKLVAEYTASS 1481
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 1234 bits (3192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1100 (55%), Positives = 790/1100 (71%), Gaps = 57/1100 (5%)
Query: 239 MAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKV 298
M+VDVQR+ D+ WY++ IWMLP+QI A+ IL K++G+ ++A L+ T++ + P+ ++
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 299 QEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQ 358
Q YQ +M AKD+RM+ TSE L+NM+ILKLQAW++++ +++ +R E+ L K+L Q
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 359 AFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQ 418
F TFI W +P ++ VTF T +L+G +LTAG+VLSA+ATF++LQ P+ PDL+S + Q
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQ 180
Query: 419 TKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVD 478
+KVS DRI+ +LQ+ E Q+DA T +++IEN F W P SSRPTL I +KV
Sbjct: 181 SKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKVK 240
Query: 479 RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFG 538
GM+VA+CG VGSGKSSL S ILGEI K+ G VR+ G AYV QS WI SG I +NILFG
Sbjct: 241 SGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFG 300
Query: 539 SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIY 598
S + KY++ + AC+L KD ELFS+GD T IG+RGIN+SGGQKQR+Q+ARA+YQ+ADIY
Sbjct: 301 SIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIY 360
Query: 599 LLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658
LLDDPFSAVDAHTG ELF++ +M L +KTV++VTHQVEFLPAAD ILV++ GR++QAGK
Sbjct: 361 LLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGK 420
Query: 659 YDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDN 718
+++LL+ F L DS+ N++ +
Sbjct: 421 FEELLKQNIGFEVLTQC----------------DSEHNISTE------------------ 446
Query: 719 LAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLI 778
+KK+AK LVQ+EE +G + +VYL+Y+ GLL+
Sbjct: 447 -----------------NKKKEAK------LVQDEETEKGVIGKEVYLTYLTTVKGGLLV 483
Query: 779 PLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAV 838
P IILAQ FQ LQIASN+WMAW P T PK+ +L+VY LA GSS + R +
Sbjct: 484 PFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTI 543
Query: 839 LVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFA 898
LVA GL+ A+ F +ML S+FRAPMS+FDSTP GRILNR S DQSV+DL++ +LG A
Sbjct: 544 LVAIGGLSTAETFFSRMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCA 603
Query: 899 STTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLF 958
+ IQ+VG I VM+ V WQV ++ IP+AVAC++ Q+YY + REL R+ ++++PI+H F
Sbjct: 604 FSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHF 663
Query: 959 GESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCM 1018
ES+AGA+TIR F Q RF+ NL L+D +RP+F +A+EWL R+ LLS FVFAF +
Sbjct: 664 AESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSL 723
Query: 1019 VLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEA 1078
VLLV+ P G I+PS+AGL VTYGL+LN + I + C ENK+IS+ERI Q+S+IP EA
Sbjct: 724 VLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEA 783
Query: 1079 PPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKS 1138
P VI+D RP +WP G+I DL+VRY E+ P VL ITCAFPGGKKIG+VGRTGSGKS
Sbjct: 784 PLVIDDQRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKS 843
Query: 1139 TLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH 1198
TLIQALFR++EP+ G I+IDN+DI+ IGLHDLRSRLGIIPQD LF+GTIR NLDPL ++
Sbjct: 844 TLIQALFRIVEPSHGTIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQY 903
Query: 1199 SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
+DREIWEALDK QLGD++R KD+KL+ V+ENG+NWSVGQRQLV LGR LLK++ ILVLD
Sbjct: 904 TDREIWEALDKCQLGDVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLD 963
Query: 1259 EATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318
EATASVD+ATD +IQKII EFKD TV TIAHRI TVI+SDLVLVLSDGR+AEFD+P +L
Sbjct: 964 EATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKL 1023
Query: 1319 LEDKSSMFLKLVTEYSSRSS 1338
L+ + S F KL+ EYS RS+
Sbjct: 1024 LQREDSFFSKLIKEYSLRSN 1043
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/1287 (45%), Positives = 837/1287 (65%), Gaps = 49/1287 (3%)
Query: 56 KVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNW-EKL 114
+V+ + AGLFS ++ WLN L+ G + LE +DIP L ++RA+T Y N E+
Sbjct: 203 RVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQK 262
Query: 115 KAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHE 174
+ + PS+ + W+E + FA + + GP L++ F+ G +F +E
Sbjct: 263 RRLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYE 322
Query: 175 GYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGE 234
G +LA + F +K++E+++ RQWY I+G+ VRS LTA + +K L+L++ ++ H+ E
Sbjct: 323 GLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSE 382
Query: 235 IVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVP 294
I+NY VD R+G++ ++ H +W Q+++AL IL+ +VG+A+ + L I++++ P
Sbjct: 383 IMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAP 442
Query: 295 VAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKA 354
+AK+Q ++Q +LM ++DER++ +E L NM++LKL AWE ++ +E++R +E + L+
Sbjct: 443 IAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAV 502
Query: 355 LYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVS 414
+A+ +FWSSP+FV+A TF T L L A +V + +AT R++Q+P+R PD++
Sbjct: 503 QMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPDVIG 562
Query: 415 MMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNV-AIQIENAEFCWY-PSSSRPTLSG 472
+ Q KV+ RI+ FL+ ELQ R N AI I++A F W S++P L
Sbjct: 563 VTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRN 622
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIE 532
+S++V G +VAVCG VGSGKS+LL+ ILGE P +SG + GT AYVSQ+AWIQ+G I
Sbjct: 623 VSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIR 682
Query: 533 ENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592
+NILFG MD+ +Y++ I SL KDLEL GDQT IG+RG+NLSGGQKQR+QLARALY
Sbjct: 683 DNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALY 742
Query: 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGR 652
QDADIYLLDDPFSAVDAHT S LF+EY+M ALA K V+ VTHQV+FLPA D +L++ +G
Sbjct: 743 QDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGE 802
Query: 653 IIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDAS 712
I +A Y +LL DF LV+AH E + S+ + ++ P K+ +
Sbjct: 803 ITEADTYQELLARSRDFQDLVNAHRE-----------TAGSERVVAVENPTKPVKEINRV 851
Query: 713 GDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAA 772
+S+ K +K + L+++EER +G ++ Y+ YM
Sbjct: 852 ---------------ISSQSKVLKPSR---------LIKQEEREKGDTGLRPYIQYMNQN 887
Query: 773 YRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWF 832
+ + LAQV F QI N WMA AN D P+V+ + L++VY+ + S
Sbjct: 888 KGYIFFFIASLAQVTFAVGQILQNSWMA-ANV----DNPQVSTLKLILVYLLIGLCSVLC 942
Query: 833 IFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPF 892
+ VR+V V + ++ LF ++L S+FRAPMSF+DSTP GRIL+RVS D S+VDLD+PF
Sbjct: 943 LMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPF 1002
Query: 893 RLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKS 952
L ++++ +GV+ +VTWQVL + +PM +QKYY +++EL+RI +S
Sbjct: 1003 GLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRS 1062
Query: 953 PIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTF 1012
+ + ES+AGA TIR F +E+RF K++L L+D A PFF S AA EWL R+E +S
Sbjct: 1063 YVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAI 1122
Query: 1013 VF---AFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIY 1069
V AFCM+LL P G G+A++YGL+LN L + + C L N IIS+ER+
Sbjct: 1123 VLASTAFCMILL---PTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLN 1179
Query: 1070 QYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGI 1129
QY+ + EAP VIE++RPP +WP G +E+ DL++RY PLVL GI+C F GG KIGI
Sbjct: 1180 QYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGI 1239
Query: 1130 VGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIR 1189
VGRTGSGK+TLI ALFRL+EP G+I++D +DIS IG+HDLRSR GIIPQDP LF GT+R
Sbjct: 1240 VGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVR 1299
Query: 1190 CNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249
NLDPL +HSD EIWE L K QL ++V+ K+ L++ V+E+G NWS+GQRQL LGRA+L
Sbjct: 1300 FNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVL 1359
Query: 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
+++R+LVLDEATAS+D ATD ++QK IR EF DCTV T+AHRIPTV+D +VL +SDGR+
Sbjct: 1360 RRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRI 1419
Query: 1310 AEFDTPGRLLEDKSSMFLKLVTEYSSR 1336
E+D P +L++D++S+F KLV EY S
Sbjct: 1420 VEYDEPMKLMKDENSLFGKLVKEYWSH 1446
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/1313 (45%), Positives = 828/1313 (63%), Gaps = 44/1313 (3%)
Query: 35 QVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLL 94
Q C + L +PLL + + AG FS+++ SW+NPLLS+G K+PL +DIP +
Sbjct: 180 QDCSVTGLSDPLLTKNPRK--ESARLATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSV 237
Query: 95 APKDRAKTNYKALNSNWEKLKA-ENPTKTPSLAL-AILKSFWKEAALNAVFAGLNTIVSY 152
P+D A+ YK + W+ L E+ TK +L A++K ++KE AVFA L T
Sbjct: 238 VPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVV 297
Query: 153 VGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALT 212
P ++ FVDY G+ KLVE++T R WY GM +RSAL
Sbjct: 298 SLPLMLYVFVDYANSDHRDLRNGFFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALM 357
Query: 213 AMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYK 272
Y+K LKLSSL ++ H+SGEIVNY+AVD R+G++ W+ H W L LQ++L+ A+L+
Sbjct: 358 VAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFG 417
Query: 273 NVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAW 332
VG + LI ++ ++ +P AK+ + Q + M A+D+R+R TSE L +M+++KLQ+W
Sbjct: 418 VVGAGAFPGLILLLLCGLLNLPFAKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSW 477
Query: 333 EDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTF-GTSILLGAQLTAGS 391
ED ++ ++E R EF WL KA ++AF +F++W SP V++V F G ++L A L A +
Sbjct: 478 EDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNAST 537
Query: 392 VLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVA 451
+ + +AT R++ EP++ PD +S + Q VS R++ FL ++EL+ D + A
Sbjct: 538 IFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTA 597
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+ I+ F W P + PTL I +++ G +VAVCG VG+GKSSLL +LGEIPK+SG V
Sbjct: 598 VDIQVGNFGWEPETKIPTLRNIHLEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTV 657
Query: 512 RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
++ G+ AYVSQ++WIQSG I +NIL+G PM+ +Y I AC+L KD+ F HGD T IG
Sbjct: 658 KVFGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIG 717
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
RGINLSGGQKQR+QLARA+Y DAD+YLLDDPFSAVDAHT LF + + +L KTVI
Sbjct: 718 QRGINLSGGQKQRIQLARAVYADADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVIL 777
Query: 632 VTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSE 691
VTHQVEFL D ILV++EG I Q+GKY++LL GT F LV+AH++A+ + +
Sbjct: 778 VTHQVEFLSEVDQILVMEEGTITQSGKYEELLMMGTAFQQLVNAHNDAVTVLPL------ 831
Query: 692 DSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGS--SASEQKAIKEKKKAKRSRKKQL 749
AS +++ +L KE +D + + + I+E+ + QL
Sbjct: 832 -------------------ASNESLGDLRKEGKDREIRNMTVVEKIEEEIEKTDIPGVQL 872
Query: 750 VQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGD 809
QEEE+ G V MK +L Y+ + L+ +L QV F Q AS +W+A+A
Sbjct: 873 TQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAASTYWLAFAI-----G 927
Query: 810 QPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDS 869
PK+ +L+ VY ++ S+ F++ RA+ A GL A++ F +VF+APM FFDS
Sbjct: 928 IPKITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAVFKAPMLFFDS 987
Query: 870 TPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVAC 929
TP GRIL R S D +V+D D+PF + ++L + +MT VTWQV+++ + A
Sbjct: 988 TPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVIIIALLALAAT 1047
Query: 930 LWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFA 989
+Q YY+AS+REL+RI K+P+++ E+ G TIR FG +RF K L L+D A
Sbjct: 1048 KVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKNYLNLVDADA 1107
Query: 990 RPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNAR-- 1047
FF S AA+EW+ LR+E L C +LL+ P G I P + GL+++Y L L
Sbjct: 1108 VLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSYALTLTQTQV 1167
Query: 1048 -LSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRY 1106
L+RW +C L N IIS+ERI QY IP E P +I+D RPPSSWP NGTI L +LK+RY
Sbjct: 1168 FLTRW---YCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQELKIRY 1224
Query: 1107 GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG 1166
N PLVL GI+C F G ++G+VGRTGSGKSTLI ALFRL+EPA G I+ID IDIS IG
Sbjct: 1225 RPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGIDISKIG 1284
Query: 1167 LHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETP 1226
L DLR +L IIPQ+P LF G IR NLDPL +SD EIW+AL+K QL + KL++
Sbjct: 1285 LKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQLKTTISNLPNKLDSS 1344
Query: 1227 VLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVC 1286
V + G+NWSVGQRQL LGR LLK+ +ILVLDEATAS+D+ATD +IQ+IIR EF DCTV
Sbjct: 1345 VSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREEFADCTVI 1404
Query: 1287 TIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSG 1339
T+AHR+PTVIDSD+V+VLS G + E++ P +L+E S F KLV EY + G
Sbjct: 1405 TVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLME-TDSYFSKLVAEYWASCRG 1456
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/1303 (44%), Positives = 834/1303 (64%), Gaps = 27/1303 (2%)
Query: 56 KVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLK 115
V+ Y A S W+NPLL G K PL L +P L+P+ RA+ S W K +
Sbjct: 246 NVSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQ 305
Query: 116 --AENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPH 173
+ NP +T +++ FWKE A AV A + V YVGP L+ FVD+ GK + P
Sbjct: 306 ENSRNPVRT-----TLIRCFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPS 360
Query: 174 EGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSG 233
+GY L I AK VE ++T Q+ LGM +RS L +Y+KGLKL+ A+Q+H G
Sbjct: 361 QGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVG 420
Query: 234 EIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTV 293
+IVNYMAVD Q++ D LH IW++PLQ+ A+ +LY +G + V T+I V +
Sbjct: 421 QIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFIL 480
Query: 294 PVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRK 353
K YQ LM +D RM+ T+E L MR++K QAWED + ++ + R +EF WL K
Sbjct: 481 LGTKRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSK 540
Query: 354 ALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLV 413
LYS A + WS+P+ ++A+TF T++ LG +L AG+V + F+ILQEP+R FP +
Sbjct: 541 FLYSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSM 600
Query: 414 SMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMT-NVAIQIENAEFCWYPSSSRPTLSG 472
++Q +SL R+ ++ EL E+ T+ +G NVA++I++ F W P +
Sbjct: 601 ISLSQAMISLGRLDAYMMSRELSEE-TVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIEN 659
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIE 532
I+ +V +G A+ G VGSGKSSLL+ +LGE+ K+SG+VR+CGT AYV+Q++WIQ+G ++
Sbjct: 660 INFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQ 719
Query: 533 ENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592
+NILFG PM+++KY +V+ C L+KD+++ GDQT IG+RGINLSGGQKQR+QLARA+Y
Sbjct: 720 DNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVY 779
Query: 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGR 652
Q++D+YLLDD FSAVDAHTGS++FK+ + AL KT++ VTHQV+FL D ILV+++G
Sbjct: 780 QESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGM 839
Query: 653 IIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSD----ENLTLDGCVIPCKK 708
I+Q+GKYD+L+ +G DF LV+AH ++E ++ + S+ ++ +T I +
Sbjct: 840 IVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATAANVPMASPITQRSISIESPR 899
Query: 709 CDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRK-----------KQLVQEEERVR 757
S + E + ++ + + S K +L++EEER
Sbjct: 900 QPKSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREV 959
Query: 758 GRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMV 817
G+VS +VY Y AY + L++ V +Q +AS++W+A+ + ++ + V
Sbjct: 960 GQVSFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYET--SAKNEVSFDATV 1017
Query: 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILN 877
+ VY+ +A S + +RA V GL AQ F ++L S+ APMSFFD+TP+GRIL+
Sbjct: 1018 FIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILS 1077
Query: 878 RVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYM 937
R S DQ+ VD+ IPF +G A+ L+ I V W + +IP+ +W + YY+
Sbjct: 1078 RASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYL 1137
Query: 938 ASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLA 997
ASSREL R+ SI K+P+IH F ESIAG TIR F ++ F + N+ ++ R F +
Sbjct: 1138 ASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNG 1197
Query: 998 AIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCK 1057
+ EWL R+EL+ ++V + +V P I P GL+++YGL+LN L I C
Sbjct: 1198 SNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCF 1257
Query: 1058 LENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGI 1117
+ENK++S+ERI Q++ IP EA I++SRPP +WP G I L D+KVRY N PLVL G+
Sbjct: 1258 IENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGL 1317
Query: 1118 TCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177
T GG+KIG+VGRTGSGKSTLIQ LFRL+EP+ G+IIID IDI T+GLHDLRSR GII
Sbjct: 1318 TIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGII 1377
Query: 1178 PQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237
PQ+P LFEGT+R N+DP E++SD EIW++L++ QL D+V K +KL++ V +NG+NWSVG
Sbjct: 1378 PQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVG 1437
Query: 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID 1297
QRQL+ LGR +LK++RIL LDEATASVD+ TD +IQKIIR +F DCT+ +IAHRIPTV+D
Sbjct: 1438 QRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMD 1497
Query: 1298 SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGI 1340
D VLV+ G+ E+D+P RLLE + S+F LV EY+ RS+GI
Sbjct: 1498 CDRVLVIDAGKAKEYDSPVRLLE-RQSLFAALVQEYALRSAGI 1539
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/1296 (44%), Positives = 835/1296 (64%), Gaps = 38/1296 (2%)
Query: 56 KVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLK 115
V+ Y A +FS W+NPLLS G K PL L+ +P L+P+ +A+ S+W K
Sbjct: 248 NVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPK-P 306
Query: 116 AENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEG 175
+EN + + +L+ FWKE A+ A + V YVGP L+ FVD+ GK + P +G
Sbjct: 307 SENSSH--PIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQG 364
Query: 176 YILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEI 235
Y L I AK VE +TT Q+ LGM +RS L +Y+KGLKL+ A+Q+H G+I
Sbjct: 365 YYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQI 424
Query: 236 VNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPV 295
VNYMAVD Q++ D LH IW++PLQ+ +AL +LY ++G ASV T + + + V + +
Sbjct: 425 VNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLG-ASVITAVIGLTGVFVFILL 483
Query: 296 AKVQEE-YQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKA 354
+ YQ LM +D RM+ T+E L MR++K QAWE+ + ++ + R +EF WL K
Sbjct: 484 GTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKF 543
Query: 355 LYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVS 414
LYS A + WS+P+ ++A+TF T++ LG +L AG+V + F+ILQEP+R FP +
Sbjct: 544 LYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMI 603
Query: 415 MMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGIS 474
++Q +SL R+ ++ +EL EDA N A+++ + F W + P LS I+
Sbjct: 604 SLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDIN 663
Query: 475 MKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEEN 534
KV +G A+ G VGSGKSSLL+ +LGE+ +ISG+VR+CG+ YV+Q++WI++G +++N
Sbjct: 664 FKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDN 723
Query: 535 ILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
ILFG PM + KY KV++ CSL+KDL++ GD+T IG+RGINLSGGQKQR+QLARA+YQ+
Sbjct: 724 ILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQE 783
Query: 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRII 654
D+YLLDD FSAVDAHTGS++FK+ + AL KTV+ VTHQV+FL D ILV+++G+I+
Sbjct: 784 CDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIV 843
Query: 655 QAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGD 714
++GKYD+L+ +G DF LV+AH ++E ++ S+ + T +
Sbjct: 844 ESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESP 903
Query: 715 NIDNLAKE----------VQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKV 764
++ +L E V+DGS +L++EEER G+VS+ V
Sbjct: 904 HLSDLNDEHIKSFLGSHIVEDGS--------------------KLIKEEERETGQVSLGV 943
Query: 765 YLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMA 824
Y Y AY I L++ + +Q +AS++W+A+ + + + V ++ Y+
Sbjct: 944 YKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLAYET--SAKNAISFDASVFILGYVI 1001
Query: 825 LAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQS 884
+A S + +R+ V GL AQ F ++L S+ APMSFFD+TP+GRIL+R S DQ+
Sbjct: 1002 IALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQT 1061
Query: 885 VVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELV 944
VD+ IPF LG S L+ I V W VIP+ +W + YY+ASSREL
Sbjct: 1062 NVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELT 1121
Query: 945 RIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCL 1004
R+ SI K+PIIH F ESIAG TIR F +++ F + N+ ++ R F + + EWL
Sbjct: 1122 RMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGF 1181
Query: 1005 RMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIIS 1064
R+EL+ ++V + +V P I P GL+++YGL+LN+ L I C +ENK++S
Sbjct: 1182 RLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVS 1241
Query: 1065 IERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGG 1124
+ERI Q++ IP E+ +++ PPS+WP +G + L DLKVRY N PLVL GIT GG
Sbjct: 1242 VERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGG 1301
Query: 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF 1184
+K+G+VGRTGSGKSTLIQ LFRL+EP+ G+IIID IDIST+GLHDLRSR GIIPQ+P LF
Sbjct: 1302 EKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLF 1361
Query: 1185 EGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244
EGT+R N+DP E++SD EIW++L++ QL D+V K +KL++ V++NG+NWSVGQRQL+ L
Sbjct: 1362 EGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCL 1421
Query: 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVL 1304
GR +LK++R+L LDEATASVD+ TD +IQKIIR +F CT+ +IAHRIPTV+D D VLV+
Sbjct: 1422 GRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVI 1481
Query: 1305 SDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGI 1340
G+ EFD+P RLLE + S+F LV EY+ RS+GI
Sbjct: 1482 DAGKAKEFDSPARLLE-RPSLFAALVQEYALRSAGI 1516
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1343 | ||||||
| 225437959 | 1773 | PREDICTED: ABC transporter C family memb | 0.997 | 0.755 | 0.884 | 0.0 | |
| 356505072 | 1539 | PREDICTED: ABC transporter C family memb | 0.975 | 0.851 | 0.877 | 0.0 | |
| 356572297 | 1537 | PREDICTED: ABC transporter C family memb | 0.974 | 0.851 | 0.878 | 0.0 | |
| 310772007 | 1538 | multidrug resistance-associated protein | 0.975 | 0.851 | 0.871 | 0.0 | |
| 224132268 | 1513 | multidrug resistance protein ABC transpo | 0.973 | 0.863 | 0.896 | 0.0 | |
| 356545904 | 1517 | PREDICTED: ABC transporter C family memb | 0.973 | 0.861 | 0.871 | 0.0 | |
| 255571166 | 1504 | multidrug resistance-associated protein | 0.953 | 0.851 | 0.890 | 0.0 | |
| 397787434 | 1513 | multidrug resistance-associated protein | 0.971 | 0.862 | 0.858 | 0.0 | |
| 297848634 | 1514 | ATMRP5 [Arabidopsis lyrata subsp. lyrata | 0.975 | 0.865 | 0.857 | 0.0 | |
| 3142303 | 1355 | Strong similarity to MRP-like ABC transp | 0.975 | 0.966 | 0.852 | 0.0 |
| >gi|225437959|ref|XP_002269589.1| PREDICTED: ABC transporter C family member 5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2410 bits (6247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1187/1342 (88%), Positives = 1259/1342 (93%), Gaps = 3/1342 (0%)
Query: 2 VQSTSVLMLWQISQQPQLLHSFVLLQLGVLLVLQVCRNSDLQEPLLLEEEAGCLKVTPYG 61
+ S +L + P L F + GV + QV RNSDLQEPLL EEEAGCLKVTPY
Sbjct: 435 LNHVSAHVLANFAASPALAFLFFVAIRGVTGI-QVRRNSDLQEPLLPEEEAGCLKVTPYS 493
Query: 62 DAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENPTK 121
+AGLFSLVTLSWLNPLLS+GAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAEN +K
Sbjct: 494 EAGLFSLVTLSWLNPLLSVGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENTSK 553
Query: 122 TPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGI 181
PSLA AILKSFW+EAA NAVFAGLNT+VSYVGPY++SYFVDYLGG ETFPHEGYILAGI
Sbjct: 554 QPSLAWAILKSFWREAACNAVFAGLNTLVSYVGPYMISYFVDYLGGNETFPHEGYILAGI 613
Query: 182 FFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAV 241
FFSAKLVET+TTRQWYLGVDILGMHVRSALTAMVYRKGL+LSS AKQSHTSGEIVNYMAV
Sbjct: 614 FFSAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAV 673
Query: 242 DVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEE 301
DVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVAT IATIISIVVTVP+AK+QE+
Sbjct: 674 DVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATFIATIISIVVTVPLAKLQED 733
Query: 302 YQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFI 361
YQDKLMAAKD+RMRKTSECLRNMRILKL AWEDRYR++LEEMR VEF WLRKALYSQAF+
Sbjct: 734 YQDKLMAAKDDRMRKTSECLRNMRILKLHAWEDRYRMKLEEMRHVEFHWLRKALYSQAFV 793
Query: 362 TFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKV 421
TFIFWSSPIFVAA+TFGTSILLG QLTAG VLSA+ATFRILQEPLRNFPDLVSMMAQTKV
Sbjct: 794 TFIFWSSPIFVAAITFGTSILLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKV 853
Query: 422 SLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGM 481
SLDRISGFLQEEELQEDATIVLPRG+TN+AI+I+N EFCW P+SS+ TLSGI MKV+RG
Sbjct: 854 SLDRISGFLQEEELQEDATIVLPRGITNMAIEIKNGEFCWDPTSSKLTLSGIQMKVERGR 913
Query: 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPM 541
RVAVCGMVGSGKSS LSCILGEIPKISGEVR+CG+AAYVSQSAWIQSGNIEENILFGSPM
Sbjct: 914 RVAVCGMVGSGKSSFLSCILGEIPKISGEVRICGSAAYVSQSAWIQSGNIEENILFGSPM 973
Query: 542 DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLD 601
D+AKYKKV+HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLD
Sbjct: 974 DRAKYKKVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLD 1033
Query: 602 DPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDD 661
DPFSAVDAHTGSELFKEYIMTALA KTVIFVTHQVEFLPAAD ILVLK G IIQAGKYDD
Sbjct: 1034 DPFSAVDAHTGSELFKEYIMTALATKTVIFVTHQVEFLPAADMILVLKGGHIIQAGKYDD 1093
Query: 662 LLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAK 721
LLQAGTDF LVSAHHEAIEAMDIP+HSSEDSDE + +G V+ KCD +NI+NLAK
Sbjct: 1094 LLQAGTDFKTLVSAHHEAIEAMDIPSHSSEDSDEIMPPNGSVV--LKCDTQANNIENLAK 1151
Query: 722 EVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLI 781
EVQ+G S S+QKAIKEKKKAKR+RKKQLVQEEER RGRVSMK+YLSYMAAAY+GLLIPLI
Sbjct: 1152 EVQEGVSTSDQKAIKEKKKAKRARKKQLVQEEERERGRVSMKIYLSYMAAAYKGLLIPLI 1211
Query: 782 ILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVA 841
ILAQ LFQ LQIASNWWMAWANPQTEG PK +PMVLL V+MALAFGSS FIFVRAVLVA
Sbjct: 1212 ILAQALFQVLQIASNWWMAWANPQTEGGLPKTSPMVLLGVFMALAFGSSCFIFVRAVLVA 1271
Query: 842 TFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTT 901
TFGL AAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTT
Sbjct: 1272 TFGLEAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTT 1331
Query: 902 IQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGES 961
IQL+GI+GVMT VTWQVLLLVIPMA+ACLWMQKYYMASSRELVRIVSIQKSP+IHLFGES
Sbjct: 1332 IQLLGIVGVMTKVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPVIHLFGES 1391
Query: 962 IAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLL 1021
IAGA+TIRGFGQEKRFMKRNLYLLDCF RPFF SLAAIEWLCLRMELLSTFVFAFCM+LL
Sbjct: 1392 IAGAATIRGFGQEKRFMKRNLYLLDCFGRPFFYSLAAIEWLCLRMELLSTFVFAFCMILL 1451
Query: 1022 VSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPV 1081
VSFPHG+IDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERI+QYSQIPGEAPP+
Sbjct: 1452 VSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIHQYSQIPGEAPPI 1511
Query: 1082 IEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLI 1141
IE+SRPPSSWPENGTIELIDLKVRY E+LP+VLH +TC FPGG KIGIVGRTGSGKSTLI
Sbjct: 1512 IENSRPPSSWPENGTIELIDLKVRYKESLPVVLHSVTCKFPGGNKIGIVGRTGSGKSTLI 1571
Query: 1142 QALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDR 1201
QALFR+IEPA G+IIIDNIDISTIGLHD+RSRL IIPQDP L EGTIR NLDPLEEHSD+
Sbjct: 1572 QALFRMIEPAGGKIIIDNIDISTIGLHDIRSRLSIIPQDPTLLEGTIRGNLDPLEEHSDQ 1631
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
EIW+ALDKSQLGD++R K+QKL+TPVLENGDNWSVGQRQLVSLG+ALLKQARILVLDEAT
Sbjct: 1632 EIWQALDKSQLGDVIRQKEQKLDTPVLENGDNWSVGQRQLVSLGQALLKQARILVLDEAT 1691
Query: 1262 ASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321
ASVDTATDNLIQKIIRTEF++CTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP RLLED
Sbjct: 1692 ASVDTATDNLIQKIIRTEFQNCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLED 1751
Query: 1322 KSSMFLKLVTEYSSRSSGIPDF 1343
KSSMFLKLVTEYSSRSSGIPDF
Sbjct: 1752 KSSMFLKLVTEYSSRSSGIPDF 1773
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505072|ref|XP_003521316.1| PREDICTED: ABC transporter C family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2373 bits (6149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1151/1312 (87%), Positives = 1240/1312 (94%), Gaps = 2/1312 (0%)
Query: 34 LQVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPL 93
++V RNS+ +PLL+EEE GCLKVTPY DAGLFSL TLSWLNPLLSIGAKRPLELKDIPL
Sbjct: 228 IKVFRNSEEHQPLLVEEEPGCLKVTPYTDAGLFSLATLSWLNPLLSIGAKRPLELKDIPL 287
Query: 94 LAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYV 153
+A KDR+KTNYK LNSNWE+LKAEN ++ PSLA A+LKSFWKEAA NAVFAG+ T+VSYV
Sbjct: 288 VAAKDRSKTNYKVLNSNWERLKAENQSEQPSLAWALLKSFWKEAACNAVFAGVTTLVSYV 347
Query: 154 GPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
GPY++SYFVDYL GKE FPHEGY+LAG+FF AKLVET TTRQWYLGVDILGMHVRSALTA
Sbjct: 348 GPYMISYFVDYLVGKEIFPHEGYVLAGVFFVAKLVETFTTRQWYLGVDILGMHVRSALTA 407
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
MVYRKGL++SSLAKQSHTSGE+VNYMA+DVQRVGDYSWYLHD+WMLPLQI+LALAILYKN
Sbjct: 408 MVYRKGLRISSLAKQSHTSGEVVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKN 467
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
VGIA++ATLIATIISIVVTVP+A+VQE YQDKLMAAKDERMRKTSECLRNMRILKLQAWE
Sbjct: 468 VGIAAIATLIATIISIVVTVPIARVQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 527
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
DRYR++LEEMRGVEF+WLRKALYSQAFITFIFWSSPIFV+AVTF TSILLG QLTAG VL
Sbjct: 528 DRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVL 587
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
SA+ATFRILQEPLRNFPDLVS MAQTKVSLDR+SGFL EEELQEDATIVLP+G+TN+AI+
Sbjct: 588 SALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIE 647
Query: 454 IENAEFCWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
I++ FCW PSSS RPTLSGISMKV+R MRVAVCGMVGSGKSS LSCILGEIPK+SGEVR
Sbjct: 648 IKDGIFCWDPSSSFRPTLSGISMKVERRMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVR 707
Query: 513 LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
+CG++AYVSQSAWIQSG IEENILFGSPMDKAKYK V+HACSLKKDLELFSHGDQTIIGD
Sbjct: 708 VCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGD 767
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632
RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS+LF+EYI+TALA+KTVIFV
Sbjct: 768 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALADKTVIFV 827
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSED 692
THQVEFLPAAD ILVLKEG IIQ+GKYDDLLQAGTDFN LVSAHHEAIEAMDIP HSSE+
Sbjct: 828 THQVEFLPAADLILVLKEGCIIQSGKYDDLLQAGTDFNTLVSAHHEAIEAMDIPTHSSEE 887
Query: 693 SDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKK-QLVQ 751
SDENL+L+ V+ KK S ++ID+LAKEVQ+GSS S+QKAIKEKKK + +K QLVQ
Sbjct: 888 SDENLSLEASVMTSKKSICSANDIDSLAKEVQEGSSISDQKAIKEKKKKAKRSRKKQLVQ 947
Query: 752 EEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811
EEER+RGRVSMKVYLSYMAAAY+GLLIPLII+AQ LFQFLQIASNWWMAWANPQTEGD P
Sbjct: 948 EEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLP 1007
Query: 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTP 871
KV P VLL+VYMALAFGSSWFIFVRAVLVATFGLAAAQKLF+KMLRSVF APMSFFDSTP
Sbjct: 1008 KVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTP 1067
Query: 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLW 931
AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL+GI+GVMT VTWQVLLLV+PMAVACLW
Sbjct: 1068 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLW 1127
Query: 932 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 991
MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP
Sbjct: 1128 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 1187
Query: 992 FFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051
FFCSL+AIEWLCLRMELLSTFVFAFCMVLLVSFP G+IDPSMAGLAVTYGLNLNARLSRW
Sbjct: 1188 FFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRW 1247
Query: 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLP 1111
ILSFCKLENKIISIERIYQYSQIP EAP +IEDSRPP SWPENGTIE+IDLKVRY ENLP
Sbjct: 1248 ILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPFSWPENGTIEIIDLKVRYKENLP 1307
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
+VLHG+TC FPGGKKIGIVGRTGSGKSTLIQALFRLIEPA G I+IDNI+IS IGLHDLR
Sbjct: 1308 MVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPASGSILIDNINISEIGLHDLR 1367
Query: 1172 SRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
S L IIPQDP LFEGTIR NLDPL+EHSD+EIWEALDKSQLG+++R K Q+L+TPVLENG
Sbjct: 1368 SHLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGEVIREKGQQLDTPVLENG 1427
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
DNWSVGQRQLV+LGRALL+Q+RILVLDEATASVDTATDNLIQKIIR+EFKDCTVCTIAHR
Sbjct: 1428 DNWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKDCTVCTIAHR 1487
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
IPTVIDSDLVLVLSDG VAEFDTP RLLEDKSS+FLKLVTEYSSRSSGIPDF
Sbjct: 1488 IPTVIDSDLVLVLSDGLVAEFDTPSRLLEDKSSVFLKLVTEYSSRSSGIPDF 1539
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572297|ref|XP_003554305.1| PREDICTED: ABC transporter C family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2362 bits (6121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1152/1311 (87%), Positives = 1241/1311 (94%), Gaps = 2/1311 (0%)
Query: 34 LQVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPL 93
++V R+S+ Q+PLL++E+ GCLKVTPY DAGLFSL LSWLNPLLSIGAKRPLELKDIPL
Sbjct: 228 IKVFRSSEEQQPLLVDEDPGCLKVTPYSDAGLFSLAILSWLNPLLSIGAKRPLELKDIPL 287
Query: 94 LAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYV 153
+APKDR+KTNYK LNSNWE+LKAEN + PSLA A+LKSFWKEAA NAVFAG+ T+VSYV
Sbjct: 288 VAPKDRSKTNYKVLNSNWERLKAENLSGQPSLAWALLKSFWKEAACNAVFAGVTTLVSYV 347
Query: 154 GPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
GPY++SYFVDYL GKE FPHEGY+LAG+FF AKLVET TTRQWYLGVDILGMHVRSALTA
Sbjct: 348 GPYMISYFVDYLVGKEIFPHEGYVLAGVFFVAKLVETFTTRQWYLGVDILGMHVRSALTA 407
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
MVYRKGL++SSLAKQSHTSGE+VNYMA+DVQRVGDYSWYLHD+WMLPLQI+LALAILYKN
Sbjct: 408 MVYRKGLRISSLAKQSHTSGEVVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKN 467
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
VGIAS+ATLIATIISI VTVP+A++QE YQDKLMAAKDERMRKTSECLRNMRILKLQAWE
Sbjct: 468 VGIASIATLIATIISIAVTVPIARIQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 527
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
DRYR++LEEMRGVEF+WLRKALYSQAFITFIFWSSPIFV+AVTFGTSILLG QLTAG VL
Sbjct: 528 DRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVL 587
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
SA+ATFRILQEPLRNFPDLVS MAQTKVSLDR+SGFL EEELQEDATIVLP+G+TN+AI+
Sbjct: 588 SALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIE 647
Query: 454 IENAEFCWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
I+ FCW PSSS RPTLSGISMKV+R MRVAVCGMVGSGKSS L CILGEIPKISGEVR
Sbjct: 648 IKGGVFCWDPSSSSRPTLSGISMKVERRMRVAVCGMVGSGKSSFLLCILGEIPKISGEVR 707
Query: 513 LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
+CG++AYVSQSAWIQSG IEENILFGSPMDKAKYK V+HACSLKKDLELFSHGD TIIGD
Sbjct: 708 VCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDLTIIGD 767
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632
RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS+LF+EYI+TALA+KTVI+V
Sbjct: 768 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALADKTVIYV 827
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSED 692
THQVEFLPAAD ILVLKEG IIQ+GKYDDLLQAGTDFN LVSAH+EAIEAMDIP HS ED
Sbjct: 828 THQVEFLPAADLILVLKEGCIIQSGKYDDLLQAGTDFNTLVSAHNEAIEAMDIPTHS-ED 886
Query: 693 SDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQE 752
SDENL+L+ CV+ KK S ++ID+LAKEVQ+GSS S+QKAIKEKKKAKRSRKKQLVQE
Sbjct: 887 SDENLSLEACVMTSKKSICSANDIDSLAKEVQEGSSISDQKAIKEKKKAKRSRKKQLVQE 946
Query: 753 EERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPK 812
EER+RGRVSMKVYLSYMAAAY+GLLIPLII+AQ LFQFLQIASNWWMAWANPQTEGD PK
Sbjct: 947 EERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPK 1006
Query: 813 VNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPA 872
V P VLL+VYMALAFGSSWFIFVRAVLVATFGLAAAQKLF+KMLRSVF APMSFFDSTPA
Sbjct: 1007 VTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPA 1066
Query: 873 GRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWM 932
GRILNRVSIDQSVVDLDIPFRLGGFASTTIQL+GI+GVMT VTWQVLLLV+PMAVACLWM
Sbjct: 1067 GRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWM 1126
Query: 933 QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPF 992
QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPF
Sbjct: 1127 QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPF 1186
Query: 993 FCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWI 1052
FCSL+AIEWLCLRMELLSTFVFAFCMVLLVSFP G+IDPSMAGLAVTYGLNLNARLSRWI
Sbjct: 1187 FCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWI 1246
Query: 1053 LSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPL 1112
LSFCKLENKIISIERIYQYSQIP EAP VIED RPPSSWPENGTIE+IDLK+RY ENLPL
Sbjct: 1247 LSFCKLENKIISIERIYQYSQIPSEAPTVIEDYRPPSSWPENGTIEIIDLKIRYKENLPL 1306
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
VL+G+TC FPGGKKIGIVGRTGSGKSTLIQALFRLIEP G I+IDNI+IS IGLHDLRS
Sbjct: 1307 VLYGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRS 1366
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
L IIPQDP LFEGTIR NLDPL+EHSD+EIWEALDKSQLG+++R K Q+L+TPVLENGD
Sbjct: 1367 HLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGEVIREKGQQLDTPVLENGD 1426
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
NWSVGQRQLV+LGRALL+Q+RILVLDEATASVDTATDNLIQKIIR+EFK+CTVCTIAHRI
Sbjct: 1427 NWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKECTVCTIAHRI 1486
Query: 1293 PTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
PTVIDSDLVLVLSDGRVAEF+TP RLLEDKSSMFLKLVTEYSSRSSGIPDF
Sbjct: 1487 PTVIDSDLVLVLSDGRVAEFNTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310772007|emb|CBX25010.1| multidrug resistance-associated protein 1 [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 2362 bits (6120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1142/1310 (87%), Positives = 1238/1310 (94%)
Query: 34 LQVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPL 93
++VCR S+ Q+PLL+EEE GCLKVTPY DAGLFSL TLSWLNPLLSIGAKRPLELKDIPL
Sbjct: 229 IKVCRISEEQQPLLVEEEPGCLKVTPYNDAGLFSLATLSWLNPLLSIGAKRPLELKDIPL 288
Query: 94 LAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYV 153
+AP DR+KTNYK LNSNWEKLKAEN ++ PSLA AILKSFWKEAA NA+FAG+ T+VSYV
Sbjct: 289 VAPNDRSKTNYKILNSNWEKLKAENTSRQPSLAWAILKSFWKEAACNAIFAGVTTLVSYV 348
Query: 154 GPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
GPY++SYFVD+L GKE FPHEGY+LAGIFFSAKLVET TTRQWY+GVDI+GMHVRSALTA
Sbjct: 349 GPYMISYFVDFLVGKEIFPHEGYVLAGIFFSAKLVETFTTRQWYIGVDIMGMHVRSALTA 408
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
MVYRKGL++SSLAKQSHTSGEIVNYMA+DVQRVGDYSWYLHD+WMLPLQI+LALAILYKN
Sbjct: 409 MVYRKGLRISSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKN 468
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
+GIASVATLIATIISI+VTVPVA++QE+YQD+LMAAKDERMRKTSECLRNMRILKLQAWE
Sbjct: 469 IGIASVATLIATIISIIVTVPVARIQEDYQDRLMAAKDERMRKTSECLRNMRILKLQAWE 528
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
DRYR+ LE+MRGVEF+WLRKALYSQAFITF+FWSSPIFV+AVTF TSILLG QLTAG VL
Sbjct: 529 DRYRVMLEDMRGVEFKWLRKALYSQAFITFMFWSSPIFVSAVTFATSILLGGQLTAGGVL 588
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
SA+ATFRILQEPLRNFPDLVS MAQTKVSLDR+SGFL EEELQEDAT+ +P+G+TN+A++
Sbjct: 589 SALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATVAMPQGITNIALE 648
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513
I++ FCW P SSRPTLSGISMKV++ MRVAVCGMVGSGKSS LSCILGEIPK SGEVR+
Sbjct: 649 IKDGVFCWDPLSSRPTLSGISMKVEKRMRVAVCGMVGSGKSSFLSCILGEIPKTSGEVRV 708
Query: 514 CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
CG++AYVSQSAWIQSG IEENILFGSPMDKAKYK V+HACSLKKDLELFSHGDQTIIGDR
Sbjct: 709 CGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDR 768
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS+LF++YI+TALA+KTVI+VT
Sbjct: 769 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFRDYILTALADKTVIYVT 828
Query: 634 HQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDS 693
HQVEFLPAAD ILVL+EG IIQAGKYDDLLQAGTDFN LVSAHHEAIEAMDIP HSSEDS
Sbjct: 829 HQVEFLPAADLILVLREGCIIQAGKYDDLLQAGTDFNILVSAHHEAIEAMDIPTHSSEDS 888
Query: 694 DENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEE 753
DENL+L+ V+ KK S ++ID+LAKEVQ+G+S S QKAIKEKKKAKR RKKQLVQEE
Sbjct: 889 DENLSLEASVMTSKKSICSANDIDSLAKEVQEGASTSAQKAIKEKKKAKRLRKKQLVQEE 948
Query: 754 ERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813
ER+RGRVSMKVYLSYMAAAY+GLLIPLII+AQ LFQFLQIASNWWMAWANPQTEGD PKV
Sbjct: 949 ERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDLPKV 1008
Query: 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAG 873
P VLL+VYMALAFGSSWFIF+R+VLVATFGLAAAQKLF+K++RSVF APMSFFDSTPAG
Sbjct: 1009 TPSVLLLVYMALAFGSSWFIFLRSVLVATFGLAAAQKLFLKLIRSVFHAPMSFFDSTPAG 1068
Query: 874 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQ 933
RILNRVSIDQSVVDLDIPFRLGGFASTTIQL+GI+ VMT VTWQVLLLV+PMAVACLWMQ
Sbjct: 1069 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTEVTWQVLLLVVPMAVACLWMQ 1128
Query: 934 KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF 993
KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF
Sbjct: 1129 KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF 1188
Query: 994 CSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
CSL+AIEWLCLRMELLSTFVFAFCMVLLVSFP G IDPSMAGLAVTYGLNLNARLSRWIL
Sbjct: 1189 CSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNARLSRWIL 1248
Query: 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV 1113
SFCKLENKIISIERIYQYSQIP EAP +IEDSRPPSSWPENGTIE+IDLKVRY ENLPLV
Sbjct: 1249 SFCKLENKIISIERIYQYSQIPREAPTIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLV 1308
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173
LHG+TC FPGGKKIGIVGRTGSGKSTLIQALFRLIEP G I+IDNI+IS IGLHDLR
Sbjct: 1309 LHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRGH 1368
Query: 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
L IIPQDP LFEGTIR NLDPLEEHSD+EIWEALDKSQLG+++R K Q+L+TPVLENGDN
Sbjct: 1369 LSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEVIRDKGQQLDTPVLENGDN 1428
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
WSVGQRQLV+LGRALL+Q+RILVLDEATASVDTATDNLIQKIIR+EFK+CTVCTIAHRIP
Sbjct: 1429 WSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKNCTVCTIAHRIP 1488
Query: 1294 TVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
TVIDSD VLVLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRSSGIP+F
Sbjct: 1489 TVIDSDQVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPEF 1538
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132268|ref|XP_002321297.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222862070|gb|EEE99612.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2361 bits (6119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1175/1310 (89%), Positives = 1251/1310 (95%), Gaps = 3/1310 (0%)
Query: 34 LQVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPL 93
+QVCRNS+LQEPLLLEEEAGCLKVTPY +AGLFSL TLSWLNPLLSIG+KRPLELKDIPL
Sbjct: 207 IQVCRNSELQEPLLLEEEAGCLKVTPYFEAGLFSLATLSWLNPLLSIGSKRPLELKDIPL 266
Query: 94 LAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYV 153
LA +DRAKTNYK LNSN E+ KAENP++ PSLA AILKSFWKEAA NA+FA LNT+VSYV
Sbjct: 267 LASRDRAKTNYKILNSNLERRKAENPSRRPSLAWAILKSFWKEAACNAIFALLNTLVSYV 326
Query: 154 GPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
GPY+VSYFVDYLGGKETFPHEGYILAGIFFSAKLVET+TTRQWYLGVDILGMHVRSALTA
Sbjct: 327 GPYMVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETLTTRQWYLGVDILGMHVRSALTA 386
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
MVY+KGLKLSSLAKQSHTSGE+VNYMAVDVQR+GDYSWYLHDIWMLPLQIILALA+LYKN
Sbjct: 387 MVYQKGLKLSSLAKQSHTSGEVVNYMAVDVQRIGDYSWYLHDIWMLPLQIILALAVLYKN 446
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
VGIASVATLIATIISIV+T+PVAK+QE+YQD+LMAAKDERMRKTSECLRNMRILKLQAWE
Sbjct: 447 VGIASVATLIATIISIVITIPVAKIQEDYQDRLMAAKDERMRKTSECLRNMRILKLQAWE 506
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
DRYR++LE+MR VEFRWLRKALYSQAFITF+FWSSPIFV+AVTFGTSILLG QLTAG VL
Sbjct: 507 DRYRVKLEDMRCVEFRWLRKALYSQAFITFVFWSSPIFVSAVTFGTSILLGGQLTAGGVL 566
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
S++ATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT+VLPRGMTN+AI+
Sbjct: 567 SSLATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVLPRGMTNLAIE 626
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513
I++A FCW PSS R TLSGI MKV+RGMRVAVCGMVGSGKSS LSCILGEIPKISGEVR+
Sbjct: 627 IKDAAFCWDPSSLRFTLSGIQMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKISGEVRI 686
Query: 514 CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
GTAAYVSQSAWIQSGNIEENILFGSPMDKAKY VI+ACSLKKDLELFS+GDQT+IGDR
Sbjct: 687 SGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYTNVINACSLKKDLELFSYGDQTVIGDR 746
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI+TALA+KT++FVT
Sbjct: 747 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYILTALASKTLVFVT 806
Query: 634 HQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDS 693
HQ+EFLPAAD ILVLKEGRIIQAGKYDDLLQAGTDFN LVSAHHEAI AMDIPNHS S
Sbjct: 807 HQIEFLPAADLILVLKEGRIIQAGKYDDLLQAGTDFNTLVSAHHEAIGAMDIPNHS---S 863
Query: 694 DENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEE 753
DE+L+LDG I KKCDAS +I++LAKEVQD +SAS+QKAI EKKKAKRSRKKQLVQEE
Sbjct: 864 DESLSLDGSAILNKKCDASECSIESLAKEVQDSASASDQKAITEKKKAKRSRKKQLVQEE 923
Query: 754 ERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813
ERVRGRVSMKVYLSYMAAAY+GLLIPLIILAQ LFQFLQIAS+WWMAWANPQ EG QP+V
Sbjct: 924 ERVRGRVSMKVYLSYMAAAYKGLLIPLIILAQSLFQFLQIASSWWMAWANPQMEGGQPRV 983
Query: 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAG 873
+PMVLL VYMALAFGSSWFIFVRAVLVATFGLAAAQKLF+KML SVFRAPMSFFDSTPAG
Sbjct: 984 SPMVLLGVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLSSVFRAPMSFFDSTPAG 1043
Query: 874 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQ 933
RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGI+GVMT VTWQVLLLV+PMAVACLWMQ
Sbjct: 1044 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIVGVMTKVTWQVLLLVVPMAVACLWMQ 1103
Query: 934 KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF 993
KYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRFMKRNLYLLDCFARPFF
Sbjct: 1104 KYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFF 1163
Query: 994 CSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
CSL+AIEWLCLRMELLSTFVFAFCM+LLVSFPHG+IDPSMAGLAVTYGLNLNARLSRWIL
Sbjct: 1164 CSLSAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWIL 1223
Query: 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV 1113
SFCKLENKIISIERIYQYSQ+PGEAP +IEDSRP SSWPENGTI+LIDLKVRYGENLP+V
Sbjct: 1224 SFCKLENKIISIERIYQYSQLPGEAPVIIEDSRPVSSWPENGTIDLIDLKVRYGENLPMV 1283
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173
LHG++C FPGGKKIGIVGRTGSGKSTLIQALFRLIEPA GRIIIDNIDIS+IGLHDLRS
Sbjct: 1284 LHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPASGRIIIDNIDISSIGLHDLRSC 1343
Query: 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
L IIPQDP LFEGTIR NLDPLEEHSD+EIW+ALDKSQL IV+ K+QKL++PVLENGDN
Sbjct: 1344 LSIIPQDPTLFEGTIRGNLDPLEEHSDQEIWQALDKSQLRQIVQQKEQKLDSPVLENGDN 1403
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
WSVGQRQLV+LGRALLKQARILVLDEATASVD ATDNLIQKIIRTEFKDCTVCTIAHRIP
Sbjct: 1404 WSVGQRQLVALGRALLKQARILVLDEATASVDAATDNLIQKIIRTEFKDCTVCTIAHRIP 1463
Query: 1294 TVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
TVIDSDLVLVL DGRVAEFDTP RLLEDKSSMFLKLV EYSSRSS + DF
Sbjct: 1464 TVIDSDLVLVLRDGRVAEFDTPSRLLEDKSSMFLKLVMEYSSRSSSVLDF 1513
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545904|ref|XP_003541373.1| PREDICTED: ABC transporter C family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2351 bits (6093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1144/1312 (87%), Positives = 1236/1312 (94%), Gaps = 5/1312 (0%)
Query: 34 LQVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPL 93
++VC NSDLQEPLL++EE GCLKVTPY DAGLFSL TLSWLNPLLSIGAKRPLELKDIPL
Sbjct: 209 IRVCGNSDLQEPLLVDEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPL 268
Query: 94 LAPKDRAKTNYKALNSNWEKLKAEN--PTKTPSLALAILKSFWKEAALNAVFAGLNTIVS 151
+AP+DRAKT+YK LNSNWE+LKAEN P+K PSLA AILKSFWK+AALNA+FAG+NT+VS
Sbjct: 269 VAPRDRAKTSYKVLNSNWERLKAENENPSKQPSLAWAILKSFWKDAALNAIFAGMNTLVS 328
Query: 152 YVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSAL 211
YVGPY++SYFVDYLGGKETFPHEGYILAGIFF AKLVET+TTRQWYLGVDILGMHVRSAL
Sbjct: 329 YVGPYMISYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSAL 388
Query: 212 TAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILY 271
TAMVYRKGL+LSS AKQSHTSGEIVNYMAVDVQRVGDYSWYLHD+WMLP+QI+LAL ILY
Sbjct: 389 TAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILY 448
Query: 272 KNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQA 331
KNVGIASVATLIATIISIVVTVPVA+VQE+YQDKLMAAKDERMRKTSECLRNMRILKLQA
Sbjct: 449 KNVGIASVATLIATIISIVVTVPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQA 508
Query: 332 WEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGS 391
WEDRYR++LEEMRGVEF+WLRKALYSQA ITF+FWSSPIFV+AVTF TSILLG QLTAG
Sbjct: 509 WEDRYRLKLEEMRGVEFKWLRKALYSQACITFMFWSSPIFVSAVTFATSILLGGQLTAGG 568
Query: 392 VLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVA 451
VLSA+ATFRILQEPLRNFPDLVS MAQTKVSLDRIS FLQ+EELQEDATIVLP G++N A
Sbjct: 569 VLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISAFLQDEELQEDATIVLPPGISNTA 628
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+I + FCW S RPTLSGI +KV+RGM VAVCGMVGSGKSS LSCILGEIPK+SGEV
Sbjct: 629 IEIMDGVFCWDSSLPRPTLSGIHVKVERGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEV 688
Query: 512 RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
++CG+ AYVSQSAWIQSGNIEENILFG+PMDKAKYK V+HACSLKKDLELFSHGDQTIIG
Sbjct: 689 KMCGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKNVLHACSLKKDLELFSHGDQTIIG 748
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF+EY++TALA+KTVIF
Sbjct: 749 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIF 808
Query: 632 VTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSE 691
VTHQVEFLPAAD I+VLKEG IIQAGKYDDLLQAGTDF LVSAHHEAIEAMDIPNHS E
Sbjct: 809 VTHQVEFLPAADMIMVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHS-E 867
Query: 692 DSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQ 751
DSDEN+ LD ++ K +S ++I++LAKEVQ+GSS +QK IKEKKKAKRSRKKQLVQ
Sbjct: 868 DSDENVPLDDTIMTSKTSISSANDIESLAKEVQEGSS--DQKVIKEKKKAKRSRKKQLVQ 925
Query: 752 EEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811
EEERVRGRVSMKVYLSYMAAAY+G+LIPLII+AQ LFQFLQIASNWWMAWANPQT+GDQP
Sbjct: 926 EEERVRGRVSMKVYLSYMAAAYKGVLIPLIIIAQTLFQFLQIASNWWMAWANPQTKGDQP 985
Query: 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTP 871
KV P VLL+VYMALAFGSSWFIFVRAVLVATFGLAAAQKLF MLRS+F +PMSFFDSTP
Sbjct: 986 KVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHSPMSFFDSTP 1045
Query: 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLW 931
AGRILNRVSIDQSVVDLDIPFRLGGFAS+TIQL+GI+ VMT VTWQVLLLV+P+A+ CLW
Sbjct: 1046 AGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLLLVVPLAIICLW 1105
Query: 932 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 991
MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRFMKRNLYLLDCFARP
Sbjct: 1106 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARP 1165
Query: 992 FFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051
FFCSLAAIEWLCLRMELLSTFVFAFC+VLLVS PHG+IDPSMAGLAVTYGLNLNARLSRW
Sbjct: 1166 FFCSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRW 1225
Query: 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLP 1111
ILSFCKLENKIISIERIYQYSQIP EAP ++EDSRPPSSWPENGTI+LIDLKVRY ENLP
Sbjct: 1226 ILSFCKLENKIISIERIYQYSQIPSEAPAIVEDSRPPSSWPENGTIQLIDLKVRYKENLP 1285
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
+VLHG++C FPGGKKIGIVGRTGSGKSTLIQALFRL+EP G I+IDNI+IS+IGLHDLR
Sbjct: 1286 VVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISSIGLHDLR 1345
Query: 1172 SRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
S L IIPQDP LFEGTIR NLDPL+EHSD+EIWEALDKSQLGDI+R ++KL+ PVLENG
Sbjct: 1346 SHLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGDIIRETERKLDMPVLENG 1405
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
DNWSVGQ QLVSLGRALLKQ++ILVLDEATASVDTATDNLIQKIIR EF+DCTVCTIAHR
Sbjct: 1406 DNWSVGQCQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHR 1465
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
IPTVIDSDLVLVLSDGRVAEFD+P RLLEDKSSMFLKLVTEYSSRSSGIPDF
Sbjct: 1466 IPTVIDSDLVLVLSDGRVAEFDSPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571166|ref|XP_002526533.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] gi|223534094|gb|EEF35811.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2331 bits (6042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1167/1310 (89%), Positives = 1230/1310 (93%), Gaps = 29/1310 (2%)
Query: 34 LQVCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPL 93
+QVCRNSDLQEPLLLEEEAGCLKVTPY DA LFSL TLSWLNPLLS GAKRPLELKDIPL
Sbjct: 224 IQVCRNSDLQEPLLLEEEAGCLKVTPYSDATLFSLATLSWLNPLLSSGAKRPLELKDIPL 283
Query: 94 LAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYV 153
LAPKDRAK NYK LN NWEK+KAE+P K PSLA AILKSFWKEAA NA+FA +NT+VSYV
Sbjct: 284 LAPKDRAKMNYKVLNLNWEKVKAESPLKQPSLAWAILKSFWKEAACNAIFALINTLVSYV 343
Query: 154 GPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
GPY++SYFV+YLGGKETF HEGYILAGIFFSAKLVET+TTRQWYLGVDILGMHVRSALTA
Sbjct: 344 GPYMISYFVEYLGGKETFSHEGYILAGIFFSAKLVETLTTRQWYLGVDILGMHVRSALTA 403
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQR+GDYSWYLHDIWMLPLQIILALAILYKN
Sbjct: 404 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPLQIILALAILYKN 463
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
VGIASVATLIATIISI+VTVP+AKVQE+YQDKLM AKD+RMRKTSECLRNMRILKLQAWE
Sbjct: 464 VGIASVATLIATIISIIVTVPLAKVQEDYQDKLMTAKDDRMRKTSECLRNMRILKLQAWE 523
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
DRYR++LEEMR VEFRWLRKALYSQAFITFIFWSSPIFV+AVTFGTSILLG QLTAG VL
Sbjct: 524 DRYRLKLEEMRNVEFRWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVL 583
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
SA+ATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE+LQEDATI LPRGMTN+AI+
Sbjct: 584 SALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEDLQEDATIALPRGMTNLAIE 643
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513
I++ EFCW PSSSR TLSGI MKV RGMRVAVCGMVGSGKSS LSCILGEIPKISGEVR+
Sbjct: 644 IKDGEFCWDPSSSRLTLSGIQMKVQRGMRVAVCGMVGSGKSSFLSCILGEIPKISGEVRI 703
Query: 514 CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYK VIHACSLKKDLELFSHGDQTIIGDR
Sbjct: 704 CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVIHACSLKKDLELFSHGDQTIIGDR 763
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK
Sbjct: 764 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK---------------- 807
Query: 634 HQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDS 693
VLKEG+IIQAGKYDDLLQAGTDFN LV+AHHEAIEA+DIP+HSS+DS
Sbjct: 808 -------------VLKEGQIIQAGKYDDLLQAGTDFNTLVAAHHEAIEAIDIPSHSSDDS 854
Query: 694 DENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEE 753
DE++ D V KK D +G N+D+LAKEVQ+ +SAS+QKAIKEKKKAKRSRKKQLVQEE
Sbjct: 855 DESMCFDAPVAFIKKIDTTGSNVDSLAKEVQESASASDQKAIKEKKKAKRSRKKQLVQEE 914
Query: 754 ERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813
ERVRGRVSMKVYLSYMAAAY+GLLIPLI+LAQ LFQFLQIASNWWMAWANPQTEG P+V
Sbjct: 915 ERVRGRVSMKVYLSYMAAAYKGLLIPLIVLAQALFQFLQIASNWWMAWANPQTEGGPPRV 974
Query: 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAG 873
PMVLL VYMALAFGSSWFIFVRAVLVATFGLAAAQ+LF+KMLRSVFRAPMSFFDSTPAG
Sbjct: 975 YPMVLLGVYMALAFGSSWFIFVRAVLVATFGLAAAQRLFLKMLRSVFRAPMSFFDSTPAG 1034
Query: 874 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQ 933
RILNRVSIDQSVVDLDIPFRLGGFASTTIQL+GI+GVMT VTWQVLLLV+PMA+ACLWMQ
Sbjct: 1035 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLLGIVGVMTKVTWQVLLLVVPMAIACLWMQ 1094
Query: 934 KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF 993
KYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRFMKRNLYLLDCFARPFF
Sbjct: 1095 KYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFF 1154
Query: 994 CSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
CSLAAIEWLCLRMELLSTFVFAFCM+LLVSFPHG+IDPSMAGLAVTYGLNLNARLSRWIL
Sbjct: 1155 CSLAAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWIL 1214
Query: 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV 1113
SFCKLENKIISIERIYQYSQIP EAPP+IEDSRPPSSWPENGTI+LIDLKVRYGENLP+V
Sbjct: 1215 SFCKLENKIISIERIYQYSQIPSEAPPIIEDSRPPSSWPENGTIDLIDLKVRYGENLPMV 1274
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173
LHG++C+FPGG KIGIVGRTGSGKSTLIQA+FRLIEPA GRIIIDNIDISTIGLHDLRSR
Sbjct: 1275 LHGVSCSFPGGTKIGIVGRTGSGKSTLIQAVFRLIEPAEGRIIIDNIDISTIGLHDLRSR 1334
Query: 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
LGIIPQDP LFEGTIR NLDPLEEHSD+EIW+ALDKSQLG+ VR K+QKL+TPVLENGDN
Sbjct: 1335 LGIIPQDPTLFEGTIRGNLDPLEEHSDQEIWQALDKSQLGETVRRKEQKLDTPVLENGDN 1394
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK+CTVCTIAHRIP
Sbjct: 1395 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKNCTVCTIAHRIP 1454
Query: 1294 TVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
TVIDSDLVLVLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRSSGIPDF
Sbjct: 1455 TVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRSSGIPDF 1504
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|397787434|emb|CBX25011.3| multidrug resistance-associated protein 2, partial [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 2321 bits (6016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1125/1310 (85%), Positives = 1226/1310 (93%), Gaps = 5/1310 (0%)
Query: 36 VCRNSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLA 95
VCRNSDLQEPLL+EEE GCL+VTPY DAGLFSL TLSWLNPLLSIGAKRPLELKDIPL+A
Sbjct: 207 VCRNSDLQEPLLVEEEPGCLRVTPYLDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVA 266
Query: 96 PKDRAKTNYKALNSNWEKLKAEN--PTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYV 153
P+DRAKT+YK LNSNWE+LKAEN P+K SLA AIL SFWKEAALNA+FAGLNT+VSYV
Sbjct: 267 PRDRAKTSYKILNSNWERLKAENDNPSKHSSLAWAILTSFWKEAALNAIFAGLNTLVSYV 326
Query: 154 GPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTA 213
GPY++SYFVDYL GKETFPHEGY LAGIFF+AKLVET+TTRQWYLGVDILGMHVRSALTA
Sbjct: 327 GPYMISYFVDYLSGKETFPHEGYALAGIFFAAKLVETVTTRQWYLGVDILGMHVRSALTA 386
Query: 214 MVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKN 273
MVYRKGL+LSS AKQSHTSGEIVNYMAVDVQRVGD+SWYLHD+WMLP+QI+LAL ILYKN
Sbjct: 387 MVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFSWYLHDLWMLPMQIVLALLILYKN 446
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE 333
+GIAS+ATL+AT++SIVVT+PVAK+QE+YQD LMAAKDERMRKTSECLRNMRILKLQAWE
Sbjct: 447 IGIASIATLVATVVSIVVTIPVAKIQEDYQDNLMAAKDERMRKTSECLRNMRILKLQAWE 506
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
DRYR++LEEMRGVEF+WLRK+LY+QAFITFIFWSSPIFV+AVTF T ILLG QLTAG VL
Sbjct: 507 DRYRLKLEEMRGVEFKWLRKSLYTQAFITFIFWSSPIFVSAVTFATCILLGGQLTAGGVL 566
Query: 394 SAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453
SA+ATFRILQEPLRNFPDLVS MAQT+VSLDRI+ +LQ+EELQEDATIV+PRG++N+AI+
Sbjct: 567 SALATFRILQEPLRNFPDLVSTMAQTRVSLDRITTYLQDEELQEDATIVMPRGISNMAIE 626
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513
I + FCW S RPTLSGI MKV++GM VAVCGMVGSGKSS LSCILGEIPK+SGEV++
Sbjct: 627 IRDGVFCWATSLPRPTLSGIHMKVEKGMNVAVCGMVGSGKSSFLSCILGEIPKLSGEVKV 686
Query: 514 CGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
CG+ AYVSQSAWIQSGNIEENILFG+PMDKAKYKKV+HACSLKKDLELFSHGDQTIIGDR
Sbjct: 687 CGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKKVLHACSLKKDLELFSHGDQTIIGDR 746
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
GINLSGGQKQRVQLARALYQDA+IYLLDDPFSAVDAHTGSELF+EY++TALA+KTVIFVT
Sbjct: 747 GINLSGGQKQRVQLARALYQDAEIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVT 806
Query: 634 HQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDS 693
HQVEFLP+AD ILVLKEG IIQAGKYDDL AGTDF LVSAHHEAIEAMDIPNHS EDS
Sbjct: 807 HQVEFLPSADMILVLKEGHIIQAGKYDDLFLAGTDFKTLVSAHHEAIEAMDIPNHS-EDS 865
Query: 694 DENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEE 753
DEN+ LD ++ K +S +ID+LAKEVQ+GSS +QKAIKEKKKAKRSRKKQLVQEE
Sbjct: 866 DENVPLDESIMKSKTSISSAKDIDSLAKEVQEGSS--DQKAIKEKKKAKRSRKKQLVQEE 923
Query: 754 ERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813
ERVRGRVSM VY SYMAAAY+GLLIPLII+AQ LFQFLQI+S+WWMAWANPQTEGDQPKV
Sbjct: 924 ERVRGRVSMMVYWSYMAAAYKGLLIPLIIMAQTLFQFLQISSSWWMAWANPQTEGDQPKV 983
Query: 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAG 873
P VLL+VYMALAFGSSWFIF+++VLVATFGL A+QKLF MLRS+F APMSFFDSTPAG
Sbjct: 984 TPTVLLLVYMALAFGSSWFIFLKSVLVATFGLEASQKLFFNMLRSIFHAPMSFFDSTPAG 1043
Query: 874 RILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQ 933
RILNRVSIDQ+VVDLDIPFRLGGFAS+TIQL+GI+ VMT VTWQ+LLLV+PMA+ CLWMQ
Sbjct: 1044 RILNRVSIDQTVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQILLLVVPMAIICLWMQ 1103
Query: 934 KYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF 993
KYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRFMKRNLYLLDCFARPFF
Sbjct: 1104 KYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFF 1163
Query: 994 CSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
CSLAAIEWLCLRMELLSTFVFAFC+VLLVS PHG+IDPSMAGLAVTYGLNLNARLSRWIL
Sbjct: 1164 CSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRWIL 1223
Query: 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV 1113
SFCKLENKIISIERIYQYSQIP EAP VIEDSRPPSSWPE+GTI+LIDLKVRY ENLP+V
Sbjct: 1224 SFCKLENKIISIERIYQYSQIPCEAPAVIEDSRPPSSWPESGTIQLIDLKVRYKENLPVV 1283
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173
LHG++C FPGGKKIGIVGRTGSGKSTLIQALFRL+EP G I IDNI+IS IGLHDLRS
Sbjct: 1284 LHGVSCIFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSIFIDNINISDIGLHDLRSH 1343
Query: 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
L IIPQDP LFEGTIR NLDPLEEHSD+EIWEALDKSQL I+R ++KL+ PVLENGDN
Sbjct: 1344 LSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLSQIIRETERKLDMPVLENGDN 1403
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
WSVGQRQLVSLGRALLKQ++ILVLDEATASVDTATDNLIQKIIR EF+DCTVCTIAHRIP
Sbjct: 1404 WSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHRIP 1463
Query: 1294 TVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
TVIDSDLV+VLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRSSGIPDF
Sbjct: 1464 TVIDSDLVMVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1513
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848634|ref|XP_002892198.1| ATMRP5 [Arabidopsis lyrata subsp. lyrata] gi|297338040|gb|EFH68457.1| ATMRP5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2321 bits (6015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1125/1312 (85%), Positives = 1220/1312 (92%), Gaps = 2/1312 (0%)
Query: 34 LQVCRNS-DLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIP 92
+QV R+S DLQEPLL+EEEA CLKVTPY AGL SLVTLSWL+PLLS G+KRPLELKDIP
Sbjct: 203 IQVTRSSSDLQEPLLVEEEAACLKVTPYSTAGLLSLVTLSWLDPLLSAGSKRPLELKDIP 262
Query: 93 LLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSY 152
LLAP+DRAK++YK L SNW++ K+ENP+K PSLA AILKSFWKEAA NAVFAGLNT+VSY
Sbjct: 263 LLAPRDRAKSSYKVLKSNWKRSKSENPSKPPSLARAILKSFWKEAACNAVFAGLNTLVSY 322
Query: 153 VGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALT 212
VGPYL+SYFVDYLGGKE FPHEGY+LAGIFF++KL+ET+TTRQWY+GVDILGMHVRSALT
Sbjct: 323 VGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALT 382
Query: 213 AMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYK 272
AMVYRKGLKLSS+AKQ+HTSGEIVNYMAVDVQR+GDYSWYLHDIWMLP+QI+LALAILYK
Sbjct: 383 AMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYK 442
Query: 273 NVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAW 332
+VGIASVATL+ATIISI+VT+P+AKVQE+YQDKLM AKDERMRKTSECLRNMR+LKLQAW
Sbjct: 443 SVGIASVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAW 502
Query: 333 EDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSV 392
EDRYR++LEEMR E+ WLRKALYSQAF+TFIFWSSPIFVAAVTF TSI LG QLTAG V
Sbjct: 503 EDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGV 562
Query: 393 LSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAI 452
LSA+ATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIV+PRG++N+AI
Sbjct: 563 LSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVIPRGLSNIAI 622
Query: 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
+I++ FCW P SSRPTL GI MKV++GMRVAVCG VGSGKSS +SCILGEIPKISGEVR
Sbjct: 623 EIKDGVFCWDPFSSRPTLLGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVR 682
Query: 513 LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
+CGT YVSQSAWIQSGNIEENILFGSPM+K KYK VI ACSLKKDLELFSHGDQTIIG+
Sbjct: 683 ICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLKKDLELFSHGDQTIIGE 742
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632
RGINLSGGQKQRVQLARALYQDADIYLLDDPFSA+DAHTGS+LF++YI++ALA KTV+FV
Sbjct: 743 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFV 802
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSED 692
THQVEFLPAAD ILVLKEGRIIQ+GKYDDLLQAGTDF ALVSAHHEAIEAMDIP+ SSED
Sbjct: 803 THQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSED 862
Query: 693 SDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASE-QKAIKEKKKAKRSRKKQLVQ 751
SDEN D V+ K D ++I+ LAKEVQ+G SAS+ + ++KKKAKRSRKKQLVQ
Sbjct: 863 SDENPIRDILVLHNPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQ 922
Query: 752 EEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811
EEERV+G+VSMKVYLSYM AAY+GLLIPLIILAQ FQFLQIASNWWMAWANPQTEGDQ
Sbjct: 923 EEERVKGKVSMKVYLSYMGAAYKGLLIPLIILAQASFQFLQIASNWWMAWANPQTEGDQS 982
Query: 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTP 871
KV+P +LL+VY ALAFGSS FIFVRA LVATFGLAAAQKLF+ MLRSVFRAPMSFFDSTP
Sbjct: 983 KVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTP 1042
Query: 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLW 931
AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL GI+ VMT VTWQV LLV+P+AVAC W
Sbjct: 1043 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLFGIVAVMTNVTWQVFLLVVPVAVACFW 1102
Query: 932 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 991
MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRF+KRNLYLLDCF RP
Sbjct: 1103 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRP 1162
Query: 992 FFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051
FFCS+AAIEWLCLRMELLST VFAFCMVLLVSFPHG IDPSMAGLAVTYGLNLN RLSRW
Sbjct: 1163 FFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRW 1222
Query: 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLP 1111
ILSFCKLENKIISIERIYQYSQI GEAP +IED RPPSSWPE GTIEL+D+KVRY ENLP
Sbjct: 1223 ILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPETGTIELLDVKVRYAENLP 1282
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
VLHG++C FPGGKKIGIVGRTGSGKSTLIQALFRLIEP G+I IDNIDIS IGLHDLR
Sbjct: 1283 TVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLR 1342
Query: 1172 SRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
SRLGIIPQDP LFEGTIR NLDPLEEHSD +IWEALDKSQLGD+VRGKD KL++PVLENG
Sbjct: 1343 SRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENG 1402
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
DNWSVGQRQLVSLGRALLKQA+ILVLDEATASVDTATDNLIQKIIRTEF+DCTVCTIAHR
Sbjct: 1403 DNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHR 1462
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
IPTVIDSDLVLVLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRS+GIP+
Sbjct: 1463 IPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRSTGIPEL 1514
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3142303|gb|AAC16754.1| Strong similarity to MRP-like ABC transporter gb|U92650 from A. thaliana and canalicular multi-drug resistance protein gb|L49379 from Rattus norvegicus [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2318 bits (6007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1118/1312 (85%), Positives = 1219/1312 (92%), Gaps = 2/1312 (0%)
Query: 34 LQVCRNS-DLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIP 92
+QV R+S DLQEPLL+EEEA CLKVTPY AGL SL+TLSWL+PLLS G+KRPLELKDIP
Sbjct: 44 IQVTRSSSDLQEPLLVEEEAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIP 103
Query: 93 LLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSY 152
LLAP+DRAK++YK L SNW++ K+ENP+K PSLA AI+KSFWKEAA NAVFAGLNT+VSY
Sbjct: 104 LLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSY 163
Query: 153 VGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALT 212
VGPYL+SYFVDYLGGKE FPHEGY+LAGIFF++KL+ET+TTRQWY+GVDILGMHVRSALT
Sbjct: 164 VGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALT 223
Query: 213 AMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYK 272
AMVYRKGLKLSS+AKQ+HTSGEIVNYMAVDVQR+GDYSWYLHDIWMLP+QI+LALAILYK
Sbjct: 224 AMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYK 283
Query: 273 NVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAW 332
+VGIA+VATL+ATIISI+VT+P+AKVQE+YQDKLM AKDERMRKTSECLRNMR+LKLQAW
Sbjct: 284 SVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAW 343
Query: 333 EDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSV 392
EDRYR++LEEMR E+ WLRKALYSQAF+TFIFWSSPIFVAAVTF TSI LG QLTAG V
Sbjct: 344 EDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGV 403
Query: 393 LSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAI 452
LSA+ATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT+V+PRG++N+AI
Sbjct: 404 LSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAI 463
Query: 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
+I++ FCW P SSRPTLSGI MKV++GMRVAVCG VGSGKSS +SCILGEIPKISGEVR
Sbjct: 464 EIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVR 523
Query: 513 LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
+CGT YVSQSAWIQSGNIEENILFGSPM+K KYK VI ACSLKKD+ELFSHGDQTIIG+
Sbjct: 524 ICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGE 583
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632
RGINLSGGQKQRVQLARALYQDADIYLLDDPFSA+DAHTGS+LF++YI++ALA KTV+FV
Sbjct: 584 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFV 643
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSED 692
THQVEFLPAAD ILVLKEGRIIQ+GKYDDLLQAGTDF ALVSAHHEAIEAMDIP+ SSED
Sbjct: 644 THQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSED 703
Query: 693 SDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASE-QKAIKEKKKAKRSRKKQLVQ 751
SDEN D V+ K D ++I+ LAKEVQ+G SAS+ + ++KKKAKRSRKKQLVQ
Sbjct: 704 SDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQ 763
Query: 752 EEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811
EEERV+G+VSMKVYLSYM AAY+G LIPLIILAQ FQFLQIASNWWMAWANPQTEGD+
Sbjct: 764 EEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDES 823
Query: 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTP 871
KV+P +LL+VY ALAFGSS FIFVRA LVATFGLAAAQKLF+ MLRSVFRAPMSFFDSTP
Sbjct: 824 KVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTP 883
Query: 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLW 931
AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL GI+ VMT VTWQV LLV+P+AVAC W
Sbjct: 884 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFW 943
Query: 932 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 991
MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRF+KRNLYLLDCF RP
Sbjct: 944 MQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRP 1003
Query: 992 FFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051
FFCS+AAIEWLCLRMELLST VFAFCMVLLVSFPHG IDPSMAGLAVTYGLNLN RLSRW
Sbjct: 1004 FFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRW 1063
Query: 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLP 1111
ILSFCKLENKIISIERIYQYSQI GEAP +IED RPPSSWP GTIEL+D+KVRY ENLP
Sbjct: 1064 ILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLP 1123
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
VLHG++C FPGGKKIGIVGRTGSGKSTLIQALFRLIEP G+I IDNIDIS IGLHDLR
Sbjct: 1124 TVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLR 1183
Query: 1172 SRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
SRLGIIPQDP LFEGTIR NLDPLEEHSD +IWEALDKSQLGD+VRGKD KL++PVLENG
Sbjct: 1184 SRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENG 1243
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
DNWSVGQRQLVSLGRALLKQA+ILVLDEATASVDTATDNLIQKIIRTEF+DCTVCTIAHR
Sbjct: 1244 DNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHR 1303
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPDF 1343
IPTVIDSDLVLVLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRS+GIP+
Sbjct: 1304 IPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRSTGIPEL 1355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1343 | ||||||
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.970 | 0.861 | 0.831 | 0.0 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.948 | 0.841 | 0.546 | 0.0 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.438 | 0.401 | 0.578 | 0.0 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.438 | 0.394 | 0.560 | 0.0 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.468 | 0.408 | 0.446 | 6.7e-294 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.431 | 0.398 | 0.498 | 3.7e-293 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.942 | 0.835 | 0.441 | 5e-289 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.434 | 0.365 | 0.414 | 3e-227 | |
| UNIPROTKB|F1NM51 | 1534 | ABCC3 "Uncharacterized protein | 0.426 | 0.373 | 0.404 | 1.2e-217 | |
| UNIPROTKB|Q5F364 | 1525 | ABCC1 "Multidrug resistance-as | 0.895 | 0.788 | 0.362 | 3.3e-217 |
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5645 (1992.2 bits), Expect = 0., P = 0.
Identities = 1085/1305 (83%), Positives = 1180/1305 (90%)
Query: 39 NSDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKD 98
+SDLQEPLL+EEEA CLKVTPY AGL SL+TLSWL+PLLS G+KRPLELKDIPLLAP+D
Sbjct: 209 SSDLQEPLLVEEEAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRD 268
Query: 99 RAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLV 158
RAK++YK L SNW++ K+ENP+K PSLA AI+KSFWKEAA NAVFAGLNT+VSYVGPYL+
Sbjct: 269 RAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLI 328
Query: 159 SYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRK 218
SYFVDYLGGKE FPHEGY+LAGIFF++KL+ET+TTRQWY+GVDILGMHVRSALTAMVYRK
Sbjct: 329 SYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRK 388
Query: 219 GLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQXXXXXXXXYKNVGIAS 278
GLKLSS+AKQ+HTSGEIVNYMAVDVQR+GDYSWYLHDIWMLP+Q YK+VGIA+
Sbjct: 389 GLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAA 448
Query: 279 VATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRI 338
VATL+ATIISI+VT+P+AKVQE+YQDKLM AKDERMRKTSECLRNMR+LKLQAWEDRYR+
Sbjct: 449 VATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRV 508
Query: 339 QLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMAT 398
+LEEMR E+ WLRKALYSQAF+TFIFWSSPIFVAAVTF TSI LG QLTAG VLSA+AT
Sbjct: 509 RLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALAT 568
Query: 399 FRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAE 458
FRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT+V+PRG++N+AI+I++
Sbjct: 569 FRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGV 628
Query: 459 FCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA 518
FCW P SSRPTLSGI MKV++GMRVAVCG VGSGKSS +SCILGEIPKISGEVR+CGT
Sbjct: 629 FCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTG 688
Query: 519 YVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLS 578
YVSQSAWIQSGNIEENILFGSPM+K KYK VI ACSLKKD+ELFSHGDQTIIG+RGINLS
Sbjct: 689 YVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLS 748
Query: 579 GGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEF 638
GGQKQRVQLARALYQDADIYLLDDPFSA+DAHTGS+LF++YI++ALA KTV+FVTHQVEF
Sbjct: 749 GGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEF 808
Query: 639 LPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLT 698
LPAAD ILVLKEGRIIQ+GKYDDLLQAGTDF ALVSAHHEAIEAMDIP+ SSEDSDEN
Sbjct: 809 LPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPI 868
Query: 699 LDGCVIPCKKCDASGDNIDNLAKEVQDGXXXXXXXXXXXXXXXXXXXXXX-LVQEEERVR 757
D V+ K D ++I+ LAKEVQ+G LVQEEERV+
Sbjct: 869 RDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVK 928
Query: 758 GRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMV 817
G+VSMKVYLSYM AAY+G LIPLIILAQ FQFLQIASNWWMAWANPQTEGD+ KV+P +
Sbjct: 929 GKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTL 988
Query: 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILN 877
LL+VY ALAFGSS FIFVRA LVATFGLAAAQKLF+ MLRSVFRAPMSFFDSTPAGRILN
Sbjct: 989 LLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILN 1048
Query: 878 RVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYM 937
RVSIDQSVVDLDIPFRLGGFASTTIQL GI+ VMT VTWQV LLV+P+AVAC WMQKYYM
Sbjct: 1049 RVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYM 1108
Query: 938 ASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLA 997
ASSRELVRIVSIQKSPIIHLFGESIAGA+TIRGFGQEKRF+KRNLYLLDCF RPFFCS+A
Sbjct: 1109 ASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIA 1168
Query: 998 AIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCK 1057
AIEWLCLRMELLST VFAFCMVLLVSFPHG IDPSMAGLAVTYGLNLN RLSRWILSFCK
Sbjct: 1169 AIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCK 1228
Query: 1058 LENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGI 1117
LENKIISIERIYQYSQI GEAP +IED RPPSSWP GTIEL+D+KVRY ENLP VLHG+
Sbjct: 1229 LENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGV 1288
Query: 1118 TCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGII 1177
+C FPGGKKIGIVGRTGSGKSTLIQALFRLIEP G+ GLHDLRSRLGII
Sbjct: 1289 SCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGII 1348
Query: 1178 PQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237
PQDP LFEGTIR NLDPLEEHSD +IWEALDKSQLGD+VRGKD KL++PVLENGDNWSVG
Sbjct: 1349 PQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVG 1408
Query: 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID 1297
QRQLVSLGRALLKQA+ILVLDEATASVDTATDNLIQKIIRTEF+DCTVCTIAHRIPTVID
Sbjct: 1409 QRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVID 1468
Query: 1298 SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSGIPD 1342
SDLVLVLSDGRVAEFDTP RLLEDKSSMFLKLVTEYSSRS+GIP+
Sbjct: 1469 SDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRSTGIPE 1513
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3604 (1273.7 bits), Expect = 0., P = 0.
Identities = 707/1294 (54%), Positives = 918/1294 (70%)
Query: 48 LEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKAL 107
L + G + TPY AG+ SL+T SW++PL+ IG K+ L+L+D+P L D
Sbjct: 234 LNKTNGSGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKF 293
Query: 108 NSNWEKLKA--ENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYL 165
S E + T L A+ + E + A FA + T+ SYVGP L+ FV YL
Sbjct: 294 RSMLESPDGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYL 353
Query: 166 GGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSL 225
G+ + HEGY+L FF+AK+VE ++ R W+ + +G+ +RSAL AM+Y KGL LS
Sbjct: 354 NGRRQYNHEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQ 413
Query: 226 AKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQXXXXXXXXYKNVGIASVATLIAT 285
+KQ TSGEI+N+M VD +R+G++SWY+HD WM+ LQ Y+N+G+AS+A L+AT
Sbjct: 414 SKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVAT 473
Query: 286 IISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRG 345
II +++ P ++QE +Q+KLM AKD RM+ TSE LRNMRILKLQ WE ++ ++ ++R
Sbjct: 474 IIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRK 533
Query: 346 VEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEP 405
E WL+K +Y+ A I+F+FW +P V+ TFG ILLG L +G +LSA+ATFRILQEP
Sbjct: 534 SEEGWLKKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEP 593
Query: 406 LRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSS 465
+ N PD +SM+ QTKVSLDR++ +L + LQ D LP+G ++VA+++ N+ W SS
Sbjct: 594 IYNLPDTISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSS 653
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525
S PTL I+ KV GM+VAVCG VGSGKSSLLS +LGE+PK+SG +++CGT AYV+QS W
Sbjct: 654 SNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPW 713
Query: 526 IQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585
IQSG IE+NILFG PM++ +Y KV+ ACSL KDLE+ S GDQT+IG+RGINLSGGQKQR+
Sbjct: 714 IQSGKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRI 773
Query: 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFI 645
Q+ARALYQDADIYL DDPFSAVDAHTGS LFKE ++ L +K+VI+VTHQVEFLPAAD I
Sbjct: 774 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLI 833
Query: 646 LVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIP 705
LV+K+GRI QAGKY+D+L +GTDF L+ AH EA+ +D + +S L + ++
Sbjct: 834 LVMKDGRISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVK 893
Query: 706 CKKCDASGDNIDNLAKEVQDGXXXXXXXXXXXXXXXXXXXXXXLVQEEERVRGRVSMKVY 765
DA +D E QD ++QEEER +G V++ VY
Sbjct: 894 ----DAIA--VDEKL-ESQD---------LKNDKLESVEPQRQIIQEEEREKGSVALDVY 937
Query: 766 LSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMAL 825
Y+ AY G L+P I+L QVLFQ LQI SN+WMAWA P +E Q V L++VY+AL
Sbjct: 938 WKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVAL 997
Query: 826 AFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSV 885
AFGSS I +RA L+ T G A +LF KM +FR+PMSFFDSTP+GRI++R S DQS
Sbjct: 998 AFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSA 1057
Query: 886 VDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVR 945
VDL++P++ G A T IQL+GIIGVM+ V+W V L+ IP+ A +W Q+YY+A++REL R
Sbjct: 1058 VDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSR 1117
Query: 946 IVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLR 1005
+V + K+P+I F E+I+GA+TIR F QE RF N+ L D ++RP F + A+EWLC R
Sbjct: 1118 LVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFR 1177
Query: 1006 MELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL-SFCKLENKIIS 1064
+++LS+ F F +V LVS P G IDPS+AGLAVTYGL+LN L W++ + C LENKIIS
Sbjct: 1178 LDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNT-LQAWLIWTLCNLENKIIS 1236
Query: 1065 IERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGG 1124
+ERI QY+ +P E P VIE +RP SWP G +E+ DL+VRY ++PLVL GITC F GG
Sbjct: 1237 VERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGG 1296
Query: 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLF 1184
+ GIVGRTGSGKSTLIQ LFR++EP+ G GLHDLR RL IIPQDP +F
Sbjct: 1297 LRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMF 1356
Query: 1185 EGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244
EGT+R NLDPLEE++D +IWEALDK QLGD VR K+QKL++ V ENGDNWS+GQRQLV L
Sbjct: 1357 EGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCL 1416
Query: 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVL 1304
GR LLK+++ILVLDEATASVDTATDNLIQK +R F DCTV TIAHRI +VIDSD+VL+L
Sbjct: 1417 GRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLL 1476
Query: 1305 SDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSS 1338
S+G + E+DTP RLLEDKSS F KLV EY+SRSS
Sbjct: 1477 SNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSS 1510
|
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| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1777 (630.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 341/589 (57%), Positives = 431/589 (73%)
Query: 749 LVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEG 808
LVQEEER +G+V VY YMA AY G +IPLI++ QVLFQ L I SN+WM W P ++
Sbjct: 871 LVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKD 930
Query: 809 DQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFD 868
+P V+ L++VY+ LA SS+ I +RA+LVA G A +LF +M +FRA MSFFD
Sbjct: 931 VEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFD 990
Query: 869 STPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVA 928
+TP GRILNR S DQSV DL +P + A I ++GIIGV+ V WQVL++ IP+ A
Sbjct: 991 ATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAA 1050
Query: 929 CLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCF 988
C W ++YY++++REL R+ I +SP++H F E+++G +TIR F QE RF + L DC+
Sbjct: 1051 CAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCY 1110
Query: 989 ARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARL 1048
+R F S A+EWLC R+ELLSTF FA +V+LVS P G I+PS+AGLA+TY LNLN
Sbjct: 1111 SRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQ 1170
Query: 1049 SRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGE 1108
+ I + C LENK+IS+ER+ QY+ IP E P VIE +RP SWP G I + +L+VRYG
Sbjct: 1171 ATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGP 1230
Query: 1109 NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLH 1168
+LP+VLHG+TC FPGG K GIVGRTG GKSTLIQ LFR++EPA G GLH
Sbjct: 1231 HLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLH 1290
Query: 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVL 1228
DLRSRL IIPQDP +FEGTIR NLDPLEE++D +IWEALD QLGD VR K+ KL++PV
Sbjct: 1291 DLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVS 1350
Query: 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTI 1288
ENG NWSVGQRQLV LGR LLK++++LVLDEATAS+DTATDNLIQ+ +R F DCTV TI
Sbjct: 1351 ENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITI 1410
Query: 1289 AHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRS 1337
AHRI +VIDSD+VL+L G + E D+P RLLED+SS+F KLV EY++ S
Sbjct: 1411 AHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSS 1459
|
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| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1706 (605.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 330/589 (56%), Positives = 424/589 (71%)
Query: 749 LVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEG 808
LVQEEER +G+V VY YM AY G L+P+I++ Q+LFQ L I SN+WMAW P ++
Sbjct: 893 LVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKD 952
Query: 809 DQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFD 868
+P V+ L++VY+ LA SS+ I VRA+L A G A +LF +M +FRA MSFFD
Sbjct: 953 VKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFD 1012
Query: 869 STPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVA 928
+TP GRILNR S DQS VDL +P + A + ++GIIGVM V WQVL++ IP+ A
Sbjct: 1013 ATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAA 1072
Query: 929 CLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCF 988
C W ++YY++++REL R+ I +SP++ F E+++G +TIR F QE RF + L DC+
Sbjct: 1073 CTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCY 1132
Query: 989 ARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARL 1048
+R F +++A+EWLC R++LLST FA +V+LVS P G I+PS AGLAVTY LNLN+
Sbjct: 1133 SRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQ 1192
Query: 1049 SRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGE 1108
+ I + C LENK+IS+ER+ QY IP E VIE +RP SWP G I + +L+VRYG
Sbjct: 1193 ATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGP 1252
Query: 1109 NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLH 1168
+LP+VL G+TC F GG K GIVGRTG GKSTLIQ LFR++EPA G GLH
Sbjct: 1253 HLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLH 1312
Query: 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVL 1228
DLRSRL IIPQ+P +FEGT+R NLDPLEE++D +IWEALDK QLGD +R K+ KL++PV
Sbjct: 1313 DLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVS 1372
Query: 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTI 1288
ENG NWSVGQRQLV LGR LLK++++L+LDEATASVDTATD LIQ+ +R F CTV TI
Sbjct: 1373 ENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITI 1432
Query: 1289 AHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRS 1337
AHRI +VIDSD+VL+L G + E D+P RLLEDKSS F KLV EY++ S
Sbjct: 1433 AHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASS 1481
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| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1458 (518.3 bits), Expect = 6.7e-294, Sum P(2) = 6.7e-294
Identities = 284/636 (44%), Positives = 413/636 (64%)
Query: 57 VTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKA 116
V+ Y A S W+NPLL G K PL L +P L+P+ RA+ S W K +
Sbjct: 247 VSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQ- 305
Query: 117 ENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGY 176
EN ++ P + +++ FWKE A AV A + V YVGP L+ FVD+ GK + P +GY
Sbjct: 306 EN-SRNP-VRTTLIRCFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGY 363
Query: 177 ILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIV 236
L I AK VE ++T Q+ LGM +RS L +Y+KGLKL+ A+Q+H G+IV
Sbjct: 364 YLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIV 423
Query: 237 NYMAVDVQRVGDYSWYLHDIWMLPLQXXXXXXXXYKNVGIASVATLIATIISIVVTVPVA 296
NYMAVD Q++ D LH IW++PLQ Y +G SV T + + I V + +
Sbjct: 424 NYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLG-PSVVTTVIGLTGIFVFILLG 482
Query: 297 -KVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKAL 355
K YQ LM +D RM+ T+E L MR++K QAWED + ++ + R +EF WL K L
Sbjct: 483 TKRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFL 542
Query: 356 YSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSM 415
YS A + WS+P+ ++A+TF T++ LG +L AG+V + F+ILQEP+R FP +
Sbjct: 543 YSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMIS 602
Query: 416 MAQTKVSLDRISGFLQEEELQEDATIVLPRGMT-NVAIQIENAEFCWYPSSSRPTLSGIS 474
++Q +SL R+ ++ EL E+ T+ +G NVA++I++ F W P + I+
Sbjct: 603 LSQAMISLGRLDAYMMSRELSEE-TVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENIN 661
Query: 475 MKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEEN 534
+V +G A+ G VGSGKSSLL+ +LGE+ K+SG+VR+CGT AYV+Q++WIQ+G +++N
Sbjct: 662 FEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDN 721
Query: 535 ILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
ILFG PM+++KY +V+ C L+KD+++ GDQT IG+RGINLSGGQKQR+QLARA+YQ+
Sbjct: 722 ILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQE 781
Query: 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRII 654
+D+YLLDD FSAVDAHTGS++FK+ + AL KT++ VTHQV+FL D ILV+++G I+
Sbjct: 782 SDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIV 841
Query: 655 QAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSS 690
Q+GKYD+L+ +G DF LV+AH ++E ++ + S+
Sbjct: 842 QSGKYDELVSSGLDFGELVAAHETSMELVEAGSASA 877
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 3.7e-293, Sum P(2) = 3.7e-293
Identities = 294/590 (49%), Positives = 401/590 (67%)
Query: 749 LVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEG 808
L+++EER +G ++ Y+ YM + + LAQV F QI N WMA AN
Sbjct: 864 LIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMA-ANV---- 918
Query: 809 DQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFD 868
D P+V+ + L++VY+ + S + VR+V V + ++ LF ++L S+FRAPMSF+D
Sbjct: 919 DNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYD 978
Query: 869 STPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVA 928
STP GRIL+RVS D S+VDLD+PF L ++++ +GV+ +VTWQVL + +PM
Sbjct: 979 STPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYL 1038
Query: 929 CLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCF 988
+QKYY +++EL+RI +S + + ES+AGA TIR F +E+RF K++L L+D
Sbjct: 1039 AFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTN 1098
Query: 989 ARPFFCSLAAIEWLCLRMELLSTFVFA---FCMVLLVSFPHGAIDPSMAGLAVTYGLNLN 1045
A PFF S AA EWL R+E +S V A FCM+LL P G G+A++YGL+LN
Sbjct: 1099 ASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILL---PTGTFSSGFIGMALSYGLSLN 1155
Query: 1046 ARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVR 1105
L + + C L N IIS+ER+ QY+ + EAP VIE++RPP +WP G +E+ DL++R
Sbjct: 1156 MGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIR 1215
Query: 1106 YGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXX 1165
Y PLVL GI+C F GG KIGIVGRTGSGK+TLI ALFRL+EP G+
Sbjct: 1216 YRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKI 1275
Query: 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLET 1225
G+HDLRSR GIIPQDP LF GT+R NLDPL +HSD EIWE L K QL ++V+ K+ L++
Sbjct: 1276 GVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDS 1335
Query: 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTV 1285
V+E+G NWS+GQRQL LGRA+L+++R+LVLDEATAS+D ATD ++QK IR EF DCTV
Sbjct: 1336 LVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTV 1395
Query: 1286 CTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335
T+AHRIPTV+D +VL +SDGR+ E+D P +L++D++S+F KLV EY S
Sbjct: 1396 ITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWS 1445
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2776 (982.3 bits), Expect = 5.0e-289, P = 5.0e-289
Identities = 568/1286 (44%), Positives = 816/1286 (63%)
Query: 57 VTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKA 116
V+ Y A +FS W+NPLLS G K PL L+ +P L+P+ +A+ S+W K +
Sbjct: 249 VSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPK-PS 307
Query: 117 ENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGY 176
EN + P + +L+ FWKE A+ A + V YVGP L+ FVD+ GK + P +GY
Sbjct: 308 ENSSH-P-IRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGY 365
Query: 177 ILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIV 236
L I AK VE +TT Q+ LGM +RS L +Y+KGLKL+ A+Q+H G+IV
Sbjct: 366 YLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIV 425
Query: 237 NYMAVDVQRVGDYSWYLHDIWMLPLQXXXXXXXXYKNVGIASVATLIATIISIVVTVPVA 296
NYMAVD Q++ D LH IW++PLQ Y ++G ASV T + + + V + +
Sbjct: 426 NYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLG-ASVITAVIGLTGVFVFILLG 484
Query: 297 KVQEE-YQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKAL 355
+ YQ LM +D RM+ T+E L MR++K QAWE+ + ++ + R +EF WL K L
Sbjct: 485 TQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFL 544
Query: 356 YSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSM 415
YS A + WS+P+ ++A+TF T++ LG +L AG+V + F+ILQEP+R FP +
Sbjct: 545 YSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMIS 604
Query: 416 MAQTKVSLDRISGFLQEEELQEDATIVLPRGMT-NVAIQIENAEFCWYPSSSRPTLSGIS 474
++Q +SL R+ ++ +EL EDA + G N A+++ + F W + P LS I+
Sbjct: 605 LSQAMISLGRLDSYMMSKELSEDA-VERALGCDGNTAVEVRDGSFSWDDEDNEPALSDIN 663
Query: 475 MKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEEN 534
KV +G A+ G VGSGKSSLL+ +LGE+ +ISG+VR+CG+ YV+Q++WI++G +++N
Sbjct: 664 FKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDN 723
Query: 535 ILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
ILFG PM + KY KV++ CSL+KDL++ GD+T IG+RGINLSGGQKQR+QLARA+YQ+
Sbjct: 724 ILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQE 783
Query: 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRII 654
D+YLLDD FSAVDAHTGS++FK+ + AL KTV+ VTHQV+FL D ILV+++G+I+
Sbjct: 784 CDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIV 843
Query: 655 QAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGD 714
++GKYD+L+ +G DF LV+AH ++E ++ S+ + T +
Sbjct: 844 ESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESP 903
Query: 715 NIDNLAKEVQDGXXXXXXXXXXXXXXXXXXXXXXLVQEEERVRGRVSMKVYLSYMAAAYR 774
++ +L E L++EEER G+VS+ VY Y AY
Sbjct: 904 HLSDLNDE----------HIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYG 953
Query: 775 GLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIF 834
I L++ + +Q +AS++W+A+ + + + V ++ Y+ +A S +
Sbjct: 954 WWGIVLVLFFSLTWQGSLMASDYWLAYET--SAKNAISFDASVFILGYVIIALVSIVLVS 1011
Query: 835 VRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 894
+R+ V GL AQ F ++L S+ APMSFFD+TP+GRIL+R S DQ+ VD+ IPF L
Sbjct: 1012 IRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFML 1071
Query: 895 GGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPI 954
G S L+ I V W VIP+ +W + YY+ASSREL R+ SI K+PI
Sbjct: 1072 GLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPI 1131
Query: 955 IHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVF 1014
IH F ESIAG TIR F +++ F + N+ ++ R F + + EWL R+EL+ ++V
Sbjct: 1132 IHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVL 1191
Query: 1015 AFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQI 1074
+ +V P I P GL+++YGL+LN+ L I C +ENK++S+ERI Q++ I
Sbjct: 1192 CISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDI 1251
Query: 1075 PGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTG 1134
P E+ +++ PPS+WP +G + L DLKVRY N PLVL GIT GG+K+G+VGRTG
Sbjct: 1252 PSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTG 1311
Query: 1135 SGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDP 1194
SGKSTLIQ LFRL+EP+ G+ GLHDLRSR GIIPQ+P LFEGT+R N+DP
Sbjct: 1312 SGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDP 1371
Query: 1195 LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254
E++SD EIW++L++ QL D+V K +KL++ V++NG+NWSVGQRQL+ LGR +LK++R+
Sbjct: 1372 TEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRL 1431
Query: 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1314
L LDEATASVD+ TD +IQKIIR +F CT+ +IAHRIPTV+D D VLV+ G+ EFD+
Sbjct: 1432 LFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDS 1491
Query: 1315 PGRLLEDKSSMFLKLVTEYSSRSSGI 1340
P RLLE + S+F LV EY+ RS+GI
Sbjct: 1492 PARLLE-RPSLFAALVQEYALRSAGI 1516
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 3.0e-227, Sum P(2) = 3.0e-227
Identities = 253/611 (41%), Positives = 363/611 (59%)
Query: 749 LVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILA-QVLFQFLQIASNWWMA-WANP-- 804
++ E + G+VS K+YLSY A G+L+ I+ VL Q L I +NWW++ W N
Sbjct: 982 IISVETKQEGKVSFKIYLSYFKAI--GVLLATCIIGFYVLTQLLSILANWWISIWTNSYG 1039
Query: 805 ----------------QTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAA 848
T D K L +Y+A + G+ F+R+ + FG
Sbjct: 1040 GNGNGSGSGSISLSSSSTVEDNEKAK--YYLSIYVAFSCGTIAATFLRSFSMV-FGSIKG 1096
Query: 849 QKLF-VKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGI 907
KLF KM ++V +PMSFFD+TP GRILNR S DQ +D I LG F +T Q+VG
Sbjct: 1097 SKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMFLNTFCQVVGS 1156
Query: 908 IGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAST 967
I V+ V+ ++L ++P+ ++QKYY+ SSREL R+ + +SPI F E++AG +T
Sbjct: 1157 IIVIAWVSPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETLAGVTT 1216
Query: 968 IRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHG 1027
IR F RF+ N LLD + ++ ++++ WL +R+E L + + C VL
Sbjct: 1217 IRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVS-CAVLYTVLARS 1275
Query: 1028 AIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRP 1087
I+ AGL +TY L + ++ + C LEN ++SIERI +Y +P EAP + D
Sbjct: 1276 RIEAGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEYCLLPSEAP-LFNDKSV 1334
Query: 1088 PSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL 1147
P SWP +G I +L + Y E L VL GI C K+GIVGRTG+GKS+L QALFRL
Sbjct: 1335 PMSWPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRTGAGKSSLTQALFRL 1394
Query: 1148 IEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEAL 1207
+EP G GL+ LRSR+ IIPQDP LF G++R NLDP +++ D EIWEA+
Sbjct: 1395 VEPLRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHEIWEAI 1454
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+ + L ++ D L+ V + GDN+SVGQRQL+ +GRALLK+A I+VLDEA++S+D A
Sbjct: 1455 ENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSSIDIA 1514
Query: 1268 TDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
+D LIQ+ IRT+F DCTV TIAHR+ T+ DSD ++VL G + E+D+P LL+++ S++
Sbjct: 1515 SDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQDSIYY 1574
Query: 1328 KLVTEYSSRSS 1338
LV S+ +
Sbjct: 1575 SLVKASESKQN 1585
|
|
| UNIPROTKB|F1NM51 ABCC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1083 (386.3 bits), Expect = 1.2e-217, Sum P(3) = 1.2e-217
Identities = 235/581 (40%), Positives = 344/581 (59%)
Query: 749 LVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQ-FLQIASNWWMA-WAN-PQ 805
L+Q E G V + V+ YM A +I LII Q I +N W++ W N P
Sbjct: 950 LIQAETTEVGTVKLTVFWQYMKAV--SPVISLIICFLYCCQNAASIGANVWLSDWTNEPV 1007
Query: 806 TEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMS 865
G Q N + + VY AL + +FV + +A G+ AA+KL +L + F P S
Sbjct: 1008 INGTQH--NTSMRIGVYAALGLLQGFIVFVSSFTLAMGGINAARKLHTALLENKFHTPQS 1065
Query: 866 FFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPM 925
F+D+TP GRI+NR S D V+D IP + F T + + V+ T ++V+P+
Sbjct: 1066 FYDTTPTGRIINRFSKDIFVIDEVIPPTILMFLGTFFASLSTMIVIVASTPLFAVVVVPL 1125
Query: 926 AVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLL 985
AV ++Q++Y+A+SR+L R+ S+ +SPI F E+I+G S IR + +E+ F+ + +
Sbjct: 1126 AVLYYFVQRFYVATSRQLKRLESVSRSPIYSHFSETISGTSVIRAYQRERSFIDISDLKV 1185
Query: 986 DCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLN 1045
D + ++ + + WL +R+E + + F + V +++ + GL+V+Y L +
Sbjct: 1186 DENQKSYYPGIISNRWLGIRVEFVGNCIVLFAALFAV-IGKSSLNAGLVGLSVSYALQVT 1244
Query: 1046 ARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVR 1105
L+ + + LE I+++ERI +YS+ EAP +IED RPP+ WP G +E + VR
Sbjct: 1245 MALNWMVRTTSDLETNIVAVERIKEYSETETEAPWIIEDKRPPADWPSRGELEFVGYSVR 1304
Query: 1106 YGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXX 1165
Y + L LVL + GG+KIGIVGRTG+GKS++ LFR++E A G
Sbjct: 1305 YRKGLDLVLKDLNLRVHGGEKIGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDGVRISEI 1364
Query: 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLET 1225
GLHDLRSRL IIPQDP LF GT+R NLDP ++SD E+W+AL+ S L V + LE
Sbjct: 1365 GLHDLRSRLTIIPQDPVLFSGTLRMNLDPFNKYSDEEVWKALELSHLKRFVSSQPSMLEF 1424
Query: 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTV 1285
E G+N SVGQRQLV L RALL++ R+L+LDEATA++D TD+LIQ IRT+F+DCTV
Sbjct: 1425 ECSEGGENLSVGQRQLVCLARALLRKTRVLILDEATAAIDLETDDLIQMTIRTQFEDCTV 1484
Query: 1286 CTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
TIAHR+ T++D +LVL +G +AEFDTP L+ K +
Sbjct: 1485 LTIAHRLNTIMDYTRILVLDNGTIAEFDTPANLIASKGIFY 1525
|
|
| UNIPROTKB|Q5F364 ABCC1 "Multidrug resistance-associated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2026 (718.2 bits), Expect = 3.3e-217, Sum P(2) = 3.3e-217
Identities = 444/1226 (36%), Positives = 700/1226 (57%)
Query: 114 LKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPH 173
+K + SL+ + K+F ++ +F + ++ + GP ++ ++++ K
Sbjct: 301 IKPSQRSSEASLSKVLYKTFGPYFLMSFLFKAAHDLLMFTGPEILKLLINFVNNKSAPNW 360
Query: 174 EGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSG 233
+GY G+ F ++T+ Q++ + GM +++A+ ++YRK L +++ A+++ T G
Sbjct: 361 QGYFYTGLLFVCACLQTLILHQYFHICFVTGMRLKTAIVGVIYRKALVITNSARKTSTVG 420
Query: 234 EIVNYMAVDVQRVGDYSWYLHDIWMLPLQXXXXXXXXYKNVGIASVATLIATIISIVVTV 293
EIVN M+VD QR D + Y++ IW PLQ ++N+G + +A + I+ + +
Sbjct: 421 EIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLAGVAVMILLVPINA 480
Query: 294 PVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRK 353
+A + YQ M +KD R++ +E L +++LKL AWE +R ++ E+R E + L+K
Sbjct: 481 VMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKELKVLKK 540
Query: 354 ALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQ--LTAGSVLSAMATFRILQEPLRNFPD 411
+ Y A TF + +P VA TF + + L A ++A F IL+ PL P
Sbjct: 541 SAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFPLNILPM 600
Query: 412 LVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLS 471
++S + + VSL R+ FL EEL D+ I P +I ++NA F W + P+L+
Sbjct: 601 VISSIVEASVSLKRLRVFLSHEELDPDSIIRGPITNAEGSIVVKNATFSW-SKTDPPSLN 659
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNI 531
I+ V G +AV G VG GKSSLLS +LGE+ K G V + G+ AYV Q AWIQ+ +
Sbjct: 660 SINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDKKEGYVVVKGSIAYVPQQAWIQNATL 719
Query: 532 EENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591
E+NI+FG M++++YK+VI AC+L DLE+ GD+T IG++G+NLSGGQKQRV LARA+
Sbjct: 720 EDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGVNLSGGQKQRVSLARAV 779
Query: 592 YQDADIYLLDDPFSAVDAHTGSELFKEYI--MTALANKTVIFVTHQVEFLPAADFILVLK 649
Y +AD YL DDP SAVDAH G +F++ I L NKT + VTH V +LP D ILV+
Sbjct: 780 YCNADTYLFDDPLSAVDAHVGKHIFEKVIGPKGILKNKTRVLVTHAVNYLPQMDTILVMT 839
Query: 650 EGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKC 709
+G I + G Y +LL+ F + + A ++M+ + SS E ++ V+
Sbjct: 840 DGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMESSDASSPSGKEGKPVENGVLVN--- 896
Query: 710 DASGD----NIDNLAKEVQD-GXXXXXXXXXXXXXXXXXXXXXXLVQEEERVRGRVSMKV 764
DA+G + N + ++ G L + + GRV V
Sbjct: 897 DATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKNSWKLTEADTAKTGRVKATV 956
Query: 765 YLSYMAAAYRGLLIPLIILAQVLFQFL-QIASNWWMA-WAN-PQTEGDQPKVNPMVLLVV 821
Y YM A GL I + + + + +ASN+W++ W + P G Q N V L V
Sbjct: 957 YWEYMKAI--GLYISFLSVFLFMCNHIASLASNYWLSLWTDDPVVNGTQQYTN--VRLGV 1012
Query: 822 YMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSI 881
Y AL +F ++ V+ G+ A++ L + +L +V R+PMSFF+ TP+G +++R S
Sbjct: 1013 YGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPMSFFERTPSGNLVSRFSK 1072
Query: 882 DQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSR 941
+ +D IP + F +T ++G ++ + T +++ P+ + L +Q++Y+A+SR
Sbjct: 1073 EIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPPLGLVYLLVQRFYVATSR 1132
Query: 942 ELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEW 1001
+L R+ S+ +SP+ F E++ G S IR F ++KRF+K+N +D + ++ S+ A W
Sbjct: 1133 QLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDENQKAYYPSIVANRW 1192
Query: 1002 LCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCK-LEN 1060
L +R+E + + F + V + P + GL+V+Y L + A L+ W++ LE
Sbjct: 1193 LAVRLEFVGNCIVLFAALFAV-IARNKLSPGLIGLSVSYSLQITAYLN-WLVRMTSDLET 1250
Query: 1061 KIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCA 1120
I+++ER+ +Y+++ EA IE++ P S+WP+ G +E +RY E+L LVL I
Sbjct: 1251 NIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEFRGFGLRYREDLDLVLKNINIT 1310
Query: 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQD 1180
GG+K+GIVGRTG+GKS+L LFR+ E A G GLHDLR ++ IIPQD
Sbjct: 1311 INGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDGINIAKIGLHDLRFKITIIPQD 1370
Query: 1181 PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240
P LF G++R NLDP ++HSD +IW +L+ + L + V KL E G+N SVGQRQ
Sbjct: 1371 PILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLNHECSEGGENLSVGQRQ 1430
Query: 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDL 1300
LV L RALL++++ILVLDEATA+VD TDNLIQ I+++F++CTV TIAHR+ T++D
Sbjct: 1431 LVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQFEECTVLTIAHRLNTIMDYTR 1490
Query: 1301 VLVLSDGRVAEFDTPGRLLEDKSSMF 1326
VLVL G V E D+P LL+ K +
Sbjct: 1491 VLVLDRGEVVECDSPDNLLQAKGLFY 1516
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P33527 | MRP1_HUMAN | No assigned EC number | 0.3586 | 0.9322 | 0.8177 | yes | no |
| Q6UR05 | MRP1_CANFA | No assigned EC number | 0.3559 | 0.9538 | 0.8367 | yes | no |
| Q5F364 | MRP1_CHICK | No assigned EC number | 0.3626 | 0.9530 | 0.8393 | yes | no |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3625 | 0.9419 | 0.8558 | yes | no |
| O88563 | MRP3_RAT | No assigned EC number | 0.3720 | 0.9352 | 0.8252 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3579 | 0.9687 | 0.8587 | yes | no |
| O35379 | MRP1_MOUSE | No assigned EC number | 0.3568 | 0.9292 | 0.8167 | yes | no |
| Q7GB25 | AB5C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.8521 | 0.9754 | 0.8652 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3423 | 0.9136 | 0.9274 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00028494001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (1532 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1343 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-158 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-123 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-104 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-93 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-89 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-80 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-75 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-74 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-68 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-66 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-64 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-60 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-59 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-58 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-57 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-57 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-54 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-54 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-53 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-51 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-49 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-47 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-47 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-47 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-46 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-45 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-42 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-42 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-42 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-42 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-42 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-41 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-40 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-40 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-39 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-39 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-39 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-38 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-38 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-38 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-37 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-37 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-37 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-37 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-36 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-36 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-36 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-35 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-35 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-35 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-35 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-34 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-34 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-33 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-33 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-33 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-32 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-32 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-31 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-31 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-30 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-30 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-30 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-30 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-29 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-29 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-29 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-29 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-28 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-28 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-27 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-27 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-27 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-27 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-27 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-26 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-26 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-26 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-26 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-26 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-25 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-25 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-25 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-25 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-24 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-24 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 7e-24 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-24 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-23 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-23 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-23 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-23 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-22 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-22 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-22 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-21 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-21 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-21 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-21 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-21 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-21 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-21 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-21 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-20 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-20 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-20 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-20 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-19 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-19 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-19 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-19 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-19 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-18 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-18 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-18 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 9e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-17 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-17 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-17 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-17 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-17 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-17 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 8e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-16 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-16 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-16 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-16 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-16 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-16 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-16 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-15 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-15 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-15 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-15 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-15 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-15 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-14 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-14 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-14 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-14 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-14 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-14 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-14 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-14 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-13 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-12 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-12 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-12 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-12 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-12 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 7e-12 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-12 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-11 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-11 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-11 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-10 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-10 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-10 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 6e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-10 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 7e-10 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-10 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-09 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-09 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-09 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-09 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-08 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-08 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-08 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-08 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-08 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-08 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 9e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 8e-06 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 4e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-04 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.001 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.001 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 0.003 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.003 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 0.004 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 919 bits (2378), Expect = 0.0
Identities = 485/1309 (37%), Positives = 738/1309 (56%), Gaps = 69/1309 (5%)
Query: 49 EEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALN 108
EE G ++ P A +FS + W+ PL+ +G KRPL KD+ L D+ +T Y++
Sbjct: 218 EELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQ 277
Query: 109 SNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGK 168
W++ E P L A+ S L F N + +VGP L++ ++ +
Sbjct: 278 KCWDE---ELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG 334
Query: 169 ETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQ 228
E GYI A F ++ + Q++ V +G +RS L A V+RK L+L+ ++
Sbjct: 335 EP-AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRK 393
Query: 229 SHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIAS-VATLIATII 287
TSG+I N M D + + LH +W P +II+A+ +LY+ +G+AS + +L+ ++
Sbjct: 394 KFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLM 453
Query: 288 SIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVE 347
+ T ++K+Q+ ++ L D+R+ +E L M +K AWE+ ++ +++ +R E
Sbjct: 454 FPIQTFIISKMQKLTKEGLQRT-DKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 512
Query: 348 FRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLR 407
W RKA AF +FI S P+ V V+FG LLG LT ++++ F +L+ PL
Sbjct: 513 LSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 572
Query: 408 NFPDLVSMMAQTKVSLDRISGFLQEEE--LQEDATI--VLPRGMTNVAIQIENAEFCWYP 463
P+L++ VSL R+ L EE L + + LP AI I+N F W
Sbjct: 573 MLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLP------AISIKNGYFSWDS 626
Query: 464 SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS-GEVRLCGTAAYVSQ 522
+ RPTLS I++ V G VA+ G G GK+SL+S +LGE+P S V + GT AYV Q
Sbjct: 627 KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQ 686
Query: 523 SAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582
+WI + + +NILFGSP D +Y++ I +L+ DL+L GD T IG+RG+N+SGGQK
Sbjct: 687 VSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746
Query: 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAA 642
QRV +ARA+Y ++D+Y+ DDP SA+DAH G ++F + I L KT + VT+Q+ FL
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV 806
Query: 643 DFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGC 702
D I+++ EG I + G Y++L G F L+ E M E+ E
Sbjct: 807 DRIILVHEGMIKEEGTYEELSNNGPLFQKLM----ENAGKM-------EEYVEE------ 849
Query: 703 VIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSM 762
+ D +K V +G++ + +K KKK+K K L+++EER G VS
Sbjct: 850 -----NGEEEDDQ--TSSKPVANGNANNLKKDSSSKKKSKE-GKSVLIKQEERETGVVSW 901
Query: 763 KVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMA-WANPQTEGDQPKVN-PMVLLV 820
KV Y A ++ ++ L VL + +++S+ W++ W + T PK + P+ +
Sbjct: 902 KVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGT----PKTHGPLFYNL 957
Query: 821 VYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVS 880
+Y L+FG + + + L AA++L ML S+ RAPMSFF + P GRI+NR +
Sbjct: 958 IYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFA 1017
Query: 881 IDQSVVDLDIPFRLGGFASTTIQLVG---IIG-VMTMVTWQVLLLVIPMAVACLWMQKYY 936
D +D ++ + F QL+ +IG V T+ W ++ L++ A L YY
Sbjct: 1018 KDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYL----YY 1073
Query: 937 MASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSL 996
+++RE+ R+ SI +SP+ FGE++ G STIR + R + N +D R ++
Sbjct: 1074 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNM 1133
Query: 997 AAIEWLCLRMELLSTFVFAFCMVLLV-----SFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051
++ WL +R+E L + V + A +M GL ++Y LN+ + L+
Sbjct: 1134 SSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTM-GLLLSYALNITSLLTA- 1191
Query: 1052 ILSFCKL-ENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENL 1110
+L L EN + ++ER+ Y +P EAP VIE++RPP WP +G+I+ D+ +RY L
Sbjct: 1192 VLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPEL 1251
Query: 1111 PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL 1170
P VLHG++ +K+GIVGRTG+GKS+++ ALFR++E GRI+ID DIS GL DL
Sbjct: 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311
Query: 1171 RSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
R LGIIPQ P LF GT+R NLDP EH+D ++WE+L+++ L D++R L+ V E
Sbjct: 1312 RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G+N+SVGQRQL+SL RALL++++ILVLDEATA+VD TD LIQK IR EFK CT+ IAH
Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1431
Query: 1291 RIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRSSG 1339
R+ T+ID D +LVL GRV EFDTP LL ++ S F K+V +S+G
Sbjct: 1432 RLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV-----QSTG 1475
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 899 bits (2324), Expect = 0.0
Identities = 472/1316 (35%), Positives = 734/1316 (55%), Gaps = 60/1316 (4%)
Query: 59 PYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEK----- 113
P A S +T W+ + G ++PLE D+ L +D ++ L NW+K
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKT 262
Query: 114 -------------------------------LKAENPTK--TPSLALAILKSFWKEAALN 140
L ++P K PSL + K+F ++
Sbjct: 263 RKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMS 322
Query: 141 AVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGV 200
F ++ ++ ++GP ++S + ++ +GY G+ F ++T+ Q++
Sbjct: 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382
Query: 201 DILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLP 260
+ GM +++A+ VYRK L +++ A++S T GEIVN M+VD QR D + Y++ IW P
Sbjct: 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAP 442
Query: 261 LQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSEC 320
LQ+ILAL L+ N+G + +A + ++ + + +A + YQ M +KD R++ +E
Sbjct: 443 LQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEI 502
Query: 321 LRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTS 380
L +++LKL AWE + ++E +R E + L+K+ Y A TF + +P VA +TF
Sbjct: 503 LNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVY 562
Query: 381 ILLGAQ--LTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQED 438
+ + L A ++A F IL+ PL P ++S + Q VSL R+ FL EEL+ D
Sbjct: 563 VTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD 622
Query: 439 ATIVLP--RGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSL 496
+ G N +I + NA F W PTL+GI+ + G VAV G VG GKSSL
Sbjct: 623 SIERRTIKPGEGN-SITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSL 680
Query: 497 LSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLK 556
LS +L E+ K+ G V + G+ AYV Q AWIQ+ ++ ENILFG +++ Y++V+ AC+L
Sbjct: 681 LSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALL 740
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
DLE+ GD+T IG++G+NLSGGQKQRV LARA+Y +ADIYL DDP SAVDAH G +F
Sbjct: 741 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800
Query: 617 KEYI--MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
+ I L NKT I VTH + +LP D I+V+ G+I + G Y +LLQ F +
Sbjct: 801 EHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860
Query: 675 AH-----HEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSA 729
+ +E S E + L +G ++ + + + D S
Sbjct: 861 TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920
Query: 730 SEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQ 789
A +K +AK K L++ ++ G+V + VY YM A GL I + + +
Sbjct: 921 HGSSAELQKAEAKEETWK-LMEADKAQTGQVELSVYWDYMKAI--GLFITFLSIFLFVCN 977
Query: 790 FLQ-IASNWWM-AWAN-PQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLA 846
+ +ASN+W+ W + P G Q + + L VY AL + +F ++ V+ G+
Sbjct: 978 HVSALASNYWLSLWTDDPMVNGTQNNTS--LRLSVYGALGILQGFAVFGYSMAVSIGGIQ 1035
Query: 847 AAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVG 906
A++ L +L + R+PMSFF+ TP+G ++NR S + VD IP + F + ++G
Sbjct: 1036 ASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIG 1095
Query: 907 IIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAS 966
+ V+ + T +++ P+ + ++Q++Y+ASSR+L R+ S+ +SP+ F E++ G S
Sbjct: 1096 ALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVS 1155
Query: 967 TIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPH 1026
IR F +++RF+ ++ +D + ++ S+ A WL +R+E + + F + V H
Sbjct: 1156 VIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRH 1215
Query: 1027 GAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSR 1086
++ + GL+V+Y L + L+ + ++E I+++ER+ +YS+ EAP I+++
Sbjct: 1216 -SLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETA 1274
Query: 1087 PPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146
PPS WP G +E + +RY E+L LVL I GG+K+GIVGRTG+GKS+L LFR
Sbjct: 1275 PPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334
Query: 1147 LIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEA 1206
+ E A G IIID ++I+ IGLHDLR ++ IIPQDP LF G++R NLDP ++SD E+W A
Sbjct: 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWA 1394
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
L+ + L V KL+ E G+N SVGQRQLV L RALL++ +ILVLDEATA+VD
Sbjct: 1395 LELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454
Query: 1267 ATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
TDNLIQ IRT+F+DCTV TIAHR+ T++D V+VL G VAEF P LL+ +
Sbjct: 1455 ETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 808 bits (2087), Expect = 0.0
Identities = 455/1290 (35%), Positives = 720/1290 (55%), Gaps = 55/1290 (4%)
Query: 53 GCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWE 112
G + P A +FS + SW+ PL+ +G ++P+ KD+ L D+ +T K W
Sbjct: 222 GGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWT 281
Query: 113 KLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFP 172
+ E+ P L A+ S L +F + + +VGP ++S+ + + +E P
Sbjct: 282 E---ESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSM--QEGDP 336
Query: 173 H-EGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHT 231
GY+ A + F + Q++ V +G +RS L A ++ K L+L+ A+++
Sbjct: 337 AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFA 396
Query: 232 SGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASV-ATLIATIISIV 290
SG++ N + D + + LH +W P +II+++ +LY+ +G+AS+ +LI ++ +
Sbjct: 397 SGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPL 456
Query: 291 VTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRW 350
T+ V K+++ ++ L D+R+ +E L +M +K AWE + +++ +R E W
Sbjct: 457 QTLIVRKMRKLTKEGLQWT-DKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSW 515
Query: 351 LRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFP 410
RKA AF +FI S P+ V V+FG +LLG LT ++++ F +L+ PL P
Sbjct: 516 FRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLP 575
Query: 411 DLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTL 470
+L+S + VSL RI L EE L G AI I+N F W +S+PTL
Sbjct: 576 NLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAP--AISIKNGYFSWDSKTSKPTL 633
Query: 471 SGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI-SGEVRLCGTAAYVSQSAWIQSG 529
S I++++ G VA+ G G GK+SL+S +LGE+ + V + G+ AYV Q +WI +
Sbjct: 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589
+ ENILFGS + +Y + I +L+ DL+L D T IG+RG+N+SGGQKQRV +AR
Sbjct: 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753
Query: 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLK 649
A+Y ++DIY+ DDP SA+DAH ++F + L KT + VT+Q+ FLP D I+++
Sbjct: 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVS 813
Query: 650 EGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKC 709
EG I + G + +L ++G+ F L+ E MD + + +
Sbjct: 814 EGMIKEEGTFAELSKSGSLFKKLM----ENAGKMDATQEVNTNDE--------------- 854
Query: 710 DASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYM 769
NI L V SE+ K+ KR + LV++EER G +S V + Y
Sbjct: 855 -----NILKLGPTVT--IDVSERNL-GSTKQGKR-GRSVLVKQEERETGIISWNVLMRYN 905
Query: 770 AAAYRGLLIPLIILAQVLFQFLQIASNWWMA-WANPQTEGDQPKVNPMVLLVVYMALAFG 828
A ++ ++++ + + L+++S+ W++ W + T +P +VVY L FG
Sbjct: 906 KAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQST---PKSYSPGFYIVVYALLGFG 962
Query: 829 SSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDL 888
F + + + L AA++L ML S+ RAPM FF + P GR++NR S D +D
Sbjct: 963 QVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDR 1022
Query: 889 DIPFRLGGFASTTIQLVG---IIG-VMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELV 944
++ + F + QL+ +IG V T+ W ++ L+I A L YY ++SRE+
Sbjct: 1023 NVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYL----YYQSTSREVR 1078
Query: 945 RIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCL 1004
R+ S+ +SPI FGE++ G S+IR + R K N +D R + ++ WL +
Sbjct: 1079 RLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTI 1138
Query: 1005 RMELLSTFVF----AFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLEN 1060
R+E L + F ++ + + A S GL ++Y LN+ LS + K EN
Sbjct: 1139 RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAEN 1198
Query: 1061 KIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCA 1120
+ S+ER+ Y +P EA +IE++RP S WP G+I+ D+ +RY LP VLHG++
Sbjct: 1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFF 1258
Query: 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQD 1180
+K+G+VGRTG+GKS+++ ALFR++E GRI+ID+ D++ GL DLR L IIPQ
Sbjct: 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQS 1318
Query: 1181 PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240
P LF GT+R N+DP EH+D ++WEAL+++ + D++ L+ V E G+N+SVGQRQ
Sbjct: 1319 PVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378
Query: 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDL 1300
L+SL RALL++++ILVLDEATASVD TD+LIQ+ IR EFK CT+ IAHR+ T+ID D
Sbjct: 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDK 1438
Query: 1301 VLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+LVLS G+V E+D+P LL +S F ++V
Sbjct: 1439 ILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 516 bits (1330), Expect = e-158
Identities = 289/894 (32%), Positives = 454/894 (50%), Gaps = 59/894 (6%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L +S+ V RG V G GSGKS+LL +L + G V + AYV Q AWI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589
+ NILF D A+ + L+ DL G +T IG++G+NLSGGQK RV LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLK 649
A+Y + D+YLLDDP SA+DAH G + +E + ALA KT + THQV +P AD+++ L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 650 EGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKC 709
+GR+ +G D ++ T A ++A E + + D+D +
Sbjct: 856 DGRVEFSGSSADFMR--TSLYATLAA-----ELKENKDSKEGDADAEV------------ 896
Query: 710 DASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYM 769
A D A + + + E A A + +L+ EE+ G V Y++Y+
Sbjct: 897 -AEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYL 955
Query: 770 AAAYRGLLIPLIILAQVLFQFLQIASNWWMA-WANPQTEGDQPKVNPMVLLVVYMALAFG 828
++ + + + ++S W++ W+ K++ L VY+ +
Sbjct: 956 RFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWST-----RSFKLSAATYLYVYLGIVLL 1010
Query: 829 SSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDL 888
++ + +R L ++ + +LRSV R MSFFD+TP GRILNR S D ++D
Sbjct: 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDN 1070
Query: 889 DIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVS 948
+P + I V + VL+ ++P + ++Y +++RE+ RI S
Sbjct: 1071 TLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKS 1130
Query: 949 IQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMEL 1008
+ KSP+ L E++ G++TI +G+ M+ L LD + A WL +R+E
Sbjct: 1131 VAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190
Query: 1009 LS---TFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFC-KLENKIIS 1064
LS V A V+ + + + L++T + A L+ W++ +E + S
Sbjct: 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLN-WLVRQVATVEADMNS 1249
Query: 1065 IERIYQYS-QIPGEAPP-----------------------VIEDSRPPSSWPEN---GTI 1097
+ER+ Y+ ++P E P VIE + P S+ P G++
Sbjct: 1250 VERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSL 1309
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
+++RY E LPLVL G++ +K+GIVGRTGSGKSTL+ R++E G I +
Sbjct: 1310 VFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRV 1369
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVR 1217
+ +I GL +LR + +IPQDP LF+GT+R N+DP E S E+W AL+ L + V
Sbjct: 1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVA 1429
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL-DEATASVDTATDNLIQKII 1276
+ + +++ VLE G N+SVGQRQL+ + RALLK+ +L DEATA++D A D IQ +
Sbjct: 1430 SESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489
Query: 1277 RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+ F TV TIAHR+ TV D ++V+ G VAE +P L+ ++ S+F +V
Sbjct: 1490 MSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-123
Identities = 136/221 (61%), Positives = 167/221 (75%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G IE ++ +RY NLP VL I+ + G+K+GIVGRTGSGKS+L+ ALFRL+E + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGD 1214
I+ID +DIS IGLHDLRSR+ IIPQDP LF GTIR NLDP E+SD E+W+AL++ L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
V L+T V E G+N SVGQRQL+ L RALL++++ILVLDEATASVD TD LIQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315
IR FKDCTV TIAHR+ T+IDSD +LVL GRV EFD+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 327 bits (842), Expect = e-104
Identities = 117/204 (57%), Positives = 147/204 (72%), Gaps = 3/204 (1%)
Query: 452 IQIENAEFCW--YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I +E+A F W + TL I+++V +G VA+ G VGSGKSSLLS +LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 510 EVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
V + G+ AYVSQ WIQ+G I ENILFG P D+ +Y+KVI AC+L+ DLE+ GD T
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKT 628
IG++GINLSGGQKQR+ LARA+Y DADIYLLDDP SAVDAH G +F+ I+ L NKT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 629 VIFVTHQVEFLPAADFILVLKEGR 652
I VTHQ++ LP AD I+VL GR
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 1e-93
Identities = 129/225 (57%), Positives = 153/225 (68%), Gaps = 18/225 (8%)
Query: 1091 WPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP 1150
WPE+G IE+ +L VRY +LP VL ++ G+KIGIVGRTG+GKSTLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1151 ACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKS 1210
G+I ID IDISTI L DLRS L IIPQDP LF GTIR NLDP +E+SD EI+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
V E G N S GQRQL+ L RALLK+ R+LVLDEATAS+D ATD
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1271 LIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315
LIQK IR EF + T+ TIAHR+ T+ID D +LV+ G V E+D P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 5e-89
Identities = 160/555 (28%), Positives = 261/555 (47%), Gaps = 14/555 (2%)
Query: 773 YRGLLIPLIILAQVLFQFLQIASNWWMAWA-NPQTEGDQPKVNPMVLLVVYMALAFGSSW 831
+ L+ L IL +L L + + + + LL++ + LA
Sbjct: 11 LKYKLLLLAILLLLLSALLSLLLPLLIGRIID---ALLADLGELLELLLLLLLLALLGGV 67
Query: 832 FIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIP 891
+++ L + G L + + R P+SFFD +G +++R++ D V +
Sbjct: 68 LRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVS 127
Query: 892 FRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQK 951
L ++ + L+G + ++ ++W++ L+++ + + SR+L R V
Sbjct: 128 TVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187
Query: 952 SPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLST 1011
+ ES++G I+ FG E R +KR + R + L M LLS+
Sbjct: 188 GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247
Query: 1012 FVFAFCMVLLVSFP--HGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIY 1069
++ L F G++ + Y L L + + L+ + ER++
Sbjct: 248 LGTVL-VLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLF 306
Query: 1070 QYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGI 1129
+ P +ED P G+IE ++ Y P VL I+ + G+K+ I
Sbjct: 307 ELLD----EEPEVED-PPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAI 360
Query: 1130 VGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIR 1189
VG +GSGKSTLI+ L RL +P G I+ID IDI I L LR R+GI+ QDP LF GTIR
Sbjct: 361 VGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420
Query: 1190 CNLDP-LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248
N+ + +D EI EAL + + + +T V E G N S GQRQ +++ RAL
Sbjct: 421 ENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480
Query: 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGR 1308
L+ IL+LDEAT+++DT T+ LIQ ++ K T IAHR+ T+ ++D ++VL +GR
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGR 540
Query: 1309 VAEFDTPGRLLEDKS 1323
+ E T LL
Sbjct: 541 IVERGTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 2e-80
Identities = 188/667 (28%), Positives = 312/667 (46%), Gaps = 56/667 (8%)
Query: 58 TPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAE 117
+P A S + W P+L G ++ LEL DI + D A + L W++ A
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA- 62
Query: 118 NPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHE-GY 176
+ K P L A+ + F+ + V P L+ + E Y
Sbjct: 63 SAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAY 122
Query: 177 ILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIV 236
LA +V T+ G+ LGM +R AL +++Y+K LKLSS ++G++V
Sbjct: 123 YLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLV 182
Query: 237 NYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVA 296
+ ++ ++ + + H +W+ PLQ+IL + ++++ + + L I+ + +
Sbjct: 183 SLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242
Query: 297 KVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALY 356
+ Y+DK ER+ TSE + N++ +K WE+ ++ +R E + RK Y
Sbjct: 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAY 302
Query: 357 SQAFITFIFWSSPIFVAAVT-----FGTSILLGAQLTAGS---VLSAMATFRILQEPLRN 408
+ F + F+ S FV ++ I+L T S VL T R
Sbjct: 303 LRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVT--------RQ 354
Query: 409 FPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCW------- 461
FP + + ++ +I FL +EE + L +T +++ N W
Sbjct: 355 FPGAIQTWYDSLGAITKIQDFLCKEEYK-----TLEYNLTTTEVEMVNVTASWDEGIGEL 409
Query: 462 ------------------------YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLL 497
+ P L IS K+++G +AV G GSGKSSLL
Sbjct: 410 FEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL 469
Query: 498 SCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557
I+GE+ G+++ G ++ Q++WI G I++NI+FG D+ +Y VI AC L++
Sbjct: 470 MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
D+ LF D+T++G+ GI LSGGQ+ R+ LARA+Y+DAD+YLLD PF+ +D T E+F+
Sbjct: 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 618 EYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALV--SA 675
+ ++NKT I VT ++E L AD IL+L EG G + +L DF++L+
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE 649
Query: 676 HHEAIEA 682
+ A
Sbjct: 650 AFDNFSA 656
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 4e-75
Identities = 122/236 (51%), Positives = 165/236 (69%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G I++ DL VRY NL VL + G+K+GI GRTGSGKS+L A FR+++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGD 1214
I+ID IDIS + LH LRSRL II QDP LF G+IR NLDP + +D +WEAL+ +QL +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
+V+ L+ V E G+N+SVGQRQL L RA ++++ IL++DEATAS+D AT+N++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
++ T F D TV TIAHR+ T++D+DLVLVLS G + E DTP LL + +F LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 1e-74
Identities = 176/614 (28%), Positives = 308/614 (50%), Gaps = 43/614 (7%)
Query: 746 KKQLVQEEERVRGRVSMKVYLSYMAA----AYRGLLIPLIILAQVLFQFLQIASNWWMAW 801
K+ E E V + YL Y+ + + +I LA+V L + W+
Sbjct: 837 KECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGL----WLIT 892
Query: 802 ANPQTEG--DQPKVNPMVLLVVY-MALAFGSSWFIFVRAVLVATFGLA------------ 846
NP DQ N V + + S+++IF V A LA
Sbjct: 893 DNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952
Query: 847 ---AAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQ 903
+++L +ML SV +APM+ ++ AGRILNR + D +++D +P L F T+
Sbjct: 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012
Query: 904 LVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIA 963
++G I V++++ + + IP+AV + ++ Y++ +S++L ++ S +SPI S+
Sbjct: 1013 VLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLK 1072
Query: 964 GASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVS 1023
G TIR FG++ F L+ +F L+ + W +R++++ FVF F V ++
Sbjct: 1073 GLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDII--FVFFFIAVTFIA 1130
Query: 1024 FPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPP--- 1080
G+ +T +N+ + L + S ++ + S+ R++++ +P E P
Sbjct: 1131 IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190
Query: 1081 -----------VIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGI 1129
VIE+ WP G +++ L +Y E VL ++ + GG+++G+
Sbjct: 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGL 1250
Query: 1130 VGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIR 1189
+GRTGSGKSTL+ AL RL+ G I ID + +++ L R G+IPQ +F GT R
Sbjct: 1251 LGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309
Query: 1190 CNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249
NLDP E+ SD EIW+ ++ L ++ KL+ +++ G S G +QL+ L R++L
Sbjct: 1310 KNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369
Query: 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
+A+IL+LDE +A +D T +I+K ++ F +CTV HR+ +++ LV+ V
Sbjct: 1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429
Query: 1310 AEFDTPGRLLEDKS 1323
++D+ +LL + S
Sbjct: 1430 KQYDSIQKLLNETS 1443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 2e-68
Identities = 150/576 (26%), Positives = 259/576 (44%), Gaps = 35/576 (6%)
Query: 127 LAILKSFWKE--AALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFS 184
L L + K L + L+ ++S + P L+ +D L E +L +
Sbjct: 4 LRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLAL 63
Query: 185 AKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQ 244
V + Q YLG LG + + L ++ K L+L SG++++ + DV+
Sbjct: 64 LGGV--LRALQSYLG-SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVE 120
Query: 245 RVGD-YSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQ 303
V + S L ++ L +I +L +L+ ++ L+ + +V +A+ +
Sbjct: 121 AVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLS 180
Query: 304 DKLMAAKDERMRKTSECLRNMRILKLQAWED----RYRIQLEEMRGVEFRWLRKALYSQA 359
++ A E + E L +R++K ED R+ EE+R R R
Sbjct: 181 RRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240
Query: 360 FITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQT 419
+ + V + G ++L LT G++ + + L P+ ++VS++ +
Sbjct: 241 LMLLLSSLG--TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRA 298
Query: 420 KVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDR 479
+ +R+ L EE ED P T +I+ EN F YP +P L IS ++
Sbjct: 299 SAAAERLFELLDEEPEVEDPPD--PLKDTIGSIEFENVSFS-YPGK-KPVLKDISFSIEP 354
Query: 480 GMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------------AYVSQSAWI 526
G +VA+ G GSGKS+L+ +L SGE+ + G VSQ +
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583
SG I ENI G P A +++ A + + + G TI+G+RG+NLSGGQ+Q
Sbjct: 415 FSGTIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472
Query: 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAAD 643
R+ +ARAL ++ I +LD+ SA+D T + + + L +T + + H++ + AD
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQD-ALKKLLKGRTTLIIAHRLSTIKNAD 531
Query: 644 FILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEA 679
I+VL GRI++ G +++LL G + L A A
Sbjct: 532 RIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-66
Identities = 149/528 (28%), Positives = 254/528 (48%), Gaps = 44/528 (8%)
Query: 816 MVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKML----RSVFRAPMSFFDSTP 871
VL + + A + +R L+A G ++L +++ R + R P+S+F+
Sbjct: 194 TVLAIGLLLAALFEALLRLLRTYLIAHLG----KRLDLELSGRFFRHLLRLPLSYFEKRS 249
Query: 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL---VGIIGVMTMVTWQVLLLVI----P 924
G I++RV + + F G + I L + + VM + +W++ L+V+
Sbjct: 250 VGEIISRVRELEQI----REFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305
Query: 925 MAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYL 984
+ L Q +R+L+ + Q+S ++ E+I G T++ E RF +
Sbjct: 306 NVLITLIFQPLLRRKTRKLIEESAEQQSFLV----ETIKGIETVKALAAEPRFRSQWDNR 361
Query: 985 LDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAI-----DPSMAGL--A 1037
L F E L L + + + + VL++ F GAI + ++ L
Sbjct: 362 LAKQVNIGF----KTEKLALILNTIKSLLQQLSSVLILWF--GAILVLEGELTLGQLVAF 415
Query: 1038 VTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTI 1097
+ ++R + + +++ER+ I P D G I
Sbjct: 416 NMLAGYFISPITRLSQLWTDFQQAKVALERL---GDILDTPPEQEGDKTLIHLPKLQGEI 472
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
E ++ RYG + P VL ++ P G+K+ IVGR+GSGKSTL++ L L +P GRI++
Sbjct: 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGD 1214
D +D++ I L LR ++G + QDP LF G+IR N+ +P E +D EI EA + +
Sbjct: 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHE 590
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
+ +TPV E G N S GQRQ ++L RALL + +IL+LDEAT+++D T+ +I +
Sbjct: 591 FIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ + TV IAHR+ T+ +D ++VL G++ E + LL
Sbjct: 651 NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 3e-64
Identities = 90/229 (39%), Positives = 130/229 (56%), Gaps = 2/229 (0%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G IE ++ Y E P VL I + G+ + IVG TG+GK+TLI L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKS-QLG 1213
I+ID IDI I LRS +G++ QD LF GTI N+ ++ E K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
D + +T + ENG N S G+RQL+++ RA+L+ +IL+LDEAT+++DT T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ + K T IAHR+ T+ ++D +LVL DG++ E T LL K
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 4e-60
Identities = 96/219 (43%), Positives = 137/219 (62%), Gaps = 21/219 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+Q+ N F W S TLS I++++ G + G VG GKSSLL ILGE+ + G+V
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 512 -----------------RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACS 554
R + AY +Q W+ + +EENI FGSP +K +YK V ACS
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
L+ D++L GDQT IG+RGINLSGGQ+QR+ +ARALYQ+ +I LDDPFSA+D H
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 615 LFKEYIMTALAN--KTVIFVTHQVEFLPAADFILVLKEG 651
L +E I+ L + +T++ VTH++++LP AD+I+ +K+G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 2e-59
Identities = 139/591 (23%), Positives = 239/591 (40%), Gaps = 64/591 (10%)
Query: 777 LIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVR 836
+ + L VL IA +A + Q + + LL++ + ++ ++R
Sbjct: 1 WLVISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLR 60
Query: 837 AVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGG 896
L L +L + + +F PAG + + L+ +
Sbjct: 61 ERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLAL--EGIEQLEPYY--AR 116
Query: 897 F----ASTTIQLVGIIGVMTMVTWQ---VLLLVIPMAVACLWM--------QKYYMASSR 941
+ + I + I+ + W +LL+ P+ + + + ++
Sbjct: 117 YLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSA-- 174
Query: 942 ELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEW 1001
L R+ F + + G T+R FG+ + +R + F + A +
Sbjct: 175 -LARLSG--------HFLDRLRGLETLRAFGRTEATEERIRKDSEDFRK------ATMS- 218
Query: 1002 LCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAG--LAVTYGLNLNARLSRWILS---FC 1056
LR+ LS+ V F L + A+ G L L L A L IL+ F
Sbjct: 219 -VLRIAFLSSAVLEFFAYLSI-----ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQ 272
Query: 1057 KLE----------NKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRY 1106
L + ++++ + P P + + I L +L RY
Sbjct: 273 PLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVANEPPIEISLENLSFRY 330
Query: 1107 GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG 1166
+ P L + G+ +VG +G+GKSTL+ L + P G I ++ ID+ +
Sbjct: 331 PDGKP-ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389
Query: 1167 LHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGKDQKLET 1225
R ++ + Q+P LF GTIR N+ SD EI ALD++ L + V D L+T
Sbjct: 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG-LDT 448
Query: 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTV 1285
+ E G S GQ Q ++L RALL A +L+LDE TA +D T+ +I + ++ K TV
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508
Query: 1286 CTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSR 1336
I HR+ D+D ++VL +GR+ E T L E K ++ L+ + R
Sbjct: 509 LVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 8e-58
Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 41/212 (19%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE ++ Y VL ++ G+K+ IVG +GSGKSTL++ L RL +P G I+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIV 1216
ID +D+ + L LR + +PQDP LF GTIR N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
S GQRQ +++ RALL+ IL+LDEAT+++D T+ LI + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1277 RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGR 1308
R K TV IAHR+ T+ D+D ++VL DGR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 2e-57
Identities = 99/257 (38%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 419 TKVSLDRISGFLQEE--ELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMK 476
T V ++ ++ F E EL E A + N F P L I++K
Sbjct: 2 TGVIMENVTAFWDEGFGELLEKAK--QENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLK 59
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENIL 536
+++G +A+ G GSGK+SLL ILGE+ G+++ G ++ SQ +WI G I+ENI+
Sbjct: 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII 119
Query: 537 FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596
FG D+ +YK V+ AC L++D+ F D T++G+ GI LSGGQ+ R+ LARA+Y+DAD
Sbjct: 120 FGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQA 656
+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+L EG
Sbjct: 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 657 GKYDDLLQAGTDFNALV 673
G + +L DF++ +
Sbjct: 240 GTFSELQSLRPDFSSKL 256
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 3e-57
Identities = 90/238 (37%), Positives = 135/238 (56%), Gaps = 9/238 (3%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE ++ Y P VL ++ P GKK+ IVG +GSGKST+++ LFR + + G I+
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLG 1213
ID DI + L LR +G++PQD LF TI N+ P + +D E+ EA +Q+
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
D + +T V E G S G++Q V++ RA+LK IL+LDEAT+++DT T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK---SSMFLK 1328
+R K T IAHR+ T++++D ++VL DGR+ E T LL + M+
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 3e-54
Identities = 144/523 (27%), Positives = 258/523 (49%), Gaps = 42/523 (8%)
Query: 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILN 877
L Y+ L ++ + +++L + Q+L ++ + R P+S FD+ P G++++
Sbjct: 67 LAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLIS 126
Query: 878 RVSIDQSVV-DLDIPFRLGGFASTTIQLVGIIGVMT----MVTWQ---VLLLVIPMAVAC 929
RV+ D V+ DL + +T ++ +IG M + W+ V +++ P +
Sbjct: 127 RVTNDTEVIRDLYV-----TVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVV 181
Query: 930 LWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFA 989
+ + + Y S +VR V + I F E I G S I+ F Q+ RF +R + +
Sbjct: 182 MVIYQRY---STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGER---MGEASR 235
Query: 990 RPFFCSLAAI--EWLCLRMELLSTF-VFAFC-MVLLVSF-PHGAIDPSMAGLAVTYG-LN 1043
+ + + + LR LLS F C +++L F G I + V Y ++
Sbjct: 236 SHYMARMQTLRLDGFLLR-PLLSLFSALILCGLLMLFGFSASGTI-----EVGVLYAFIS 289
Query: 1044 LNARLSRWILSFCK----LENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIEL 1099
RL+ ++ L+ +++ ER+++ + G D RP S G I++
Sbjct: 290 YLGRLNEPLIELTTQQSMLQQAVVAGERVFEL--MDGPRQQYGNDDRPLQS----GRIDI 343
Query: 1100 IDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159
++ Y ++ VL I + P + +VG TGSGKSTL L G I +D
Sbjct: 344 DNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402
Query: 1160 IDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGK 1219
+S++ LR + ++ QDP + T N+ + S+ ++W+AL+ QL ++ R
Sbjct: 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSL 462
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
L TP+ E G+N SVGQ+QL++L R L++ +IL+LDEATA++D+ T+ IQ+ +
Sbjct: 463 PDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ T+ IAHR+ T++++D +LVL G+ E T +LL +
Sbjct: 523 REHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 3e-54
Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 1/227 (0%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E ++ RY + P VL I+ P G+ + +VG +GSGKSTL+ + R + GRI+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDI 1215
ID D+ L LR ++G++ QD LF T+ N+ + E+ EA + +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1216 VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275
+ + +T + E G S GQRQ +++ RALLK IL+LDEAT+++DT ++ L+Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1276 IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ K+ T IAHR+ T+ ++D ++VL DG++ E T LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 2e-53
Identities = 140/567 (24%), Positives = 244/567 (43%), Gaps = 64/567 (11%)
Query: 139 LNAVFAGL-NTIVSYVGPYLVSYFVDYLGGKETFPHEGY----ILAGIFFSAKLVETITT 193
+ A L +++ P +D + P +LA A L E +
Sbjct: 157 FEVLLASLLLQLLALATPLFSQIVIDKV-----LPDASRSTLTVLAIGLLLAALFEALLR 211
Query: 194 --RQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW 251
R + + LG + L+ +R L+L + + GEI++ RV +
Sbjct: 212 LLRTYLI--AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIIS-------RVRELEQ 262
Query: 252 YLH----DIWMLPLQIILALAIL-------YKNVGIASVATLIATIISIVVTVPVAK-VQ 299
I L + ++ AL L +K I A + +I+++ + + +
Sbjct: 263 IREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTR 322
Query: 300 EEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQ----LEEMRGVEFRWLRKAL 355
+ ++ E ++ + +K A E R+R Q L + + F+ + AL
Sbjct: 323 KLIEESAEQQS-----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377
Query: 356 YSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSM 415
+ + S + + + FG ++L +LT G +++ P+ L +
Sbjct: 378 ILNTIKSLLQQLSSVLI--LWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTD 435
Query: 416 MAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISM 475
Q KV+L+R+ L QE ++ I+ EN F Y P L +S+
Sbjct: 436 FQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFR-YGPDDPPVLEDLSL 494
Query: 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------AAYVSQ 522
++ G +VA+ G GSGKS+LL +LG G + L G YV Q
Sbjct: 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554
Query: 523 SAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK---DLELFSHGDQTIIGDRGINLSG 579
++ SG+I ENI G+P +A +++I A L +E G T +G+ G NLSG
Sbjct: 555 DPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFL 639
GQ+QR+ LARAL I LLD+ SA+D T + + ++ L +TVI + H++ +
Sbjct: 613 GQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQNLLQILQGRTVIIIAHRLSTI 671
Query: 640 PAADFILVLKEGRIIQAGKYDDLLQAG 666
+AD I+VL +G+I++ G +++LL G
Sbjct: 672 RSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 3e-51
Identities = 133/517 (25%), Positives = 232/517 (44%), Gaps = 32/517 (6%)
Query: 816 MVLLVVYMALA-FGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGR 874
++ L V + F S++ + + V + + V+M + P+SFFD P G
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVV-------RDIRVRMFEKLLGLPVSFFDRQPTGT 112
Query: 875 ILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQK 934
+L+R++ D V T+ ++G+ V+ +WQ+ L+V+ M + +
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 935 YYMASSRELVRIVS-IQKS--PIIHLFGESIAGASTIRGFGQE----KRFMKRNLYLLDC 987
S+ L RI IQ S + + E++ G ++ FG + +RF +
Sbjct: 173 RV---SKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRL 229
Query: 988 FARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLA--VTYGLNLN 1045
+ +A +L+++ A + + F A + +T + L
Sbjct: 230 AMK----MTSAGSISSPITQLIASLALAVVL-FIALFQAQAGSLTAGDFTAFITAMIALI 284
Query: 1046 ARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVR 1105
L ++ + + E ++ + P +R G +E ++ R
Sbjct: 285 RPLKSLTNVNAPMQRGLAAAESLFT---LLDSPPEKDTGTRAIER--ARGDVEFRNVTFR 339
Query: 1106 YGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI 1165
Y L I+ G+ + +VGR+GSGKSTL+ + R EP G+I++D D++
Sbjct: 340 YPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399
Query: 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNL--DPLEEHSDREIWEALDKSQLGDIVRGKDQKL 1223
L LR ++ ++ QD LF TI N+ E+ EI AL + D V L
Sbjct: 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGL 459
Query: 1224 ETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC 1283
+TP+ ENG S GQRQ +++ RALLK A IL+LDEAT+++D ++ L+Q + +
Sbjct: 460 DTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR 519
Query: 1284 TVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
T IAHR+ T+ +D ++V+ DGR+ E T LL
Sbjct: 520 TTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-49
Identities = 143/572 (25%), Positives = 243/572 (42%), Gaps = 55/572 (9%)
Query: 137 AALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITT--R 194
+AL AV +G+ I L++ + L + F L + A ++ R
Sbjct: 5 SALLAVLSGIAIIAQA---ALLADILTKLIEGQLF-QSLLPLLILLLIALVLRAFLAWLR 60
Query: 195 QWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDY-SWYL 253
+ VR++L +V K KL +G ++++ Y + YL
Sbjct: 61 ERL--GYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118
Query: 254 HDIW---MLPLQIILALAILYKNVGIASVATLIATIISIV-VTVPVAKVQEEYQDKLMAA 309
++ ++PL I++A+ + + T + ++ V + E+ L
Sbjct: 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARL 178
Query: 310 KDERMRKTSECLRNMRILKL----QAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIF 365
+ + LR + L+ +A E+R R E+ R LR A S A + F
Sbjct: 179 SGHFL----DRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA 234
Query: 366 WSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQ----EPLRNFPDLVSMM---AQ 418
+ S I + AV G +L LT L A IL +PLR DL S A
Sbjct: 235 YLS-IALVAVYIGFRLLGEGDLT----LFAGLFVLILAPEFFQPLR---DLGSFFHAAAA 286
Query: 419 TKVSLDRISGFLQEE-ELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKV 477
+ + D++ L+ + I +EN F YP P LS +++ +
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFR-YPDGK-PALSDLNLTI 344
Query: 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------AAYVSQSA 524
G A+ G G+GKS+LL+ +LG + GE+R+ G ++VSQ+
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 525 WIQSGNIEENILFGSPMD-KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583
++ +G I ENIL P + + L + + D T+IG+ G LSGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLD-TVIGEGGAGLSGGQAQ 463
Query: 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAAD 643
R+ LARAL A + LLD+P + +DA T ++ + + KTV+ +TH++E AD
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAET-EQIILQALQELAKQKTVLVITHRLEDAADAD 522
Query: 644 FILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
I+VL GR+++ G +++L + + L+
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 3e-47
Identities = 83/231 (35%), Positives = 136/231 (58%), Gaps = 1/231 (0%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G + + DL +Y E VL I+ + G+++G++GRTGSGKSTL+ A RL+ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGD 1214
I ID + +++ L R G+IPQ +F GT R NLDP + SD EIW+ ++ L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
++ +L+ +++ G S G +QL+ L R++L +A+IL+LDE +A +D T +I+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
++ F DCTV HRI +++ LV+ + +V ++D+ +LL +KS
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 3e-47
Identities = 85/238 (35%), Positives = 142/238 (59%), Gaps = 5/238 (2%)
Query: 1097 IELIDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IE ++ RY ++P +L G++ P GK + +VG +G GKST++ L R +P G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLG 1213
I++D +DI + L LRS++G++ Q+P LF+GTI N+ + +D E+ EA K+ +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
D + +T V E G S GQ+Q +++ RALL+ +IL+LDEAT+++D ++ L+Q
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331
+ + K T IAHR+ T+ ++DL+ VL +G+V E T L+ + ++ KLV
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 5e-47
Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 5/218 (2%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G IE ++ Y L ++ G+K+ I+GR GSGKSTL++ L L +P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQ 1211
+++D DI + DLR +G +PQD LF GT+R N+ P D I A + +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP--LADDERILRAAELAG 118
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
+ D V L+ + E G S GQRQ V+L RALL IL+LDE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
+++ +R D T+ I HR + D ++V+ GR+
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-46
Identities = 116/449 (25%), Positives = 205/449 (45%), Gaps = 68/449 (15%)
Query: 889 DIPFRLGGFASTTIQLVGIIGVM--TMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRI 946
D+PF + + +I ++ +V W L+ + + + L +Q+ + E +R
Sbjct: 269 DLPF--------ALLFLLVIAIIGGPLV-WVPLVAIPLILLPGLLLQRPLSRLAEESMRE 319
Query: 947 VSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRM 1006
+ + + ++ ES++G TI+ E RF +R + ++AA+ L+
Sbjct: 320 SAQRNAVLV----ESLSGLETIKALNAEGRFQRR-----------WEQTVAALARSGLKS 364
Query: 1007 ELLST-------FVFAFCMVLLVSF-----PHGAIDPSMAGLAVTYGLN---------LN 1045
LS F+ V +V G + +M GL L+ L
Sbjct: 365 RFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL--TMGGLIACVMLSGRALAPLGQLA 422
Query: 1046 ARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPE-NGTIELIDLKV 1104
L+R+ + +++ + + Q+P E P P G IE ++
Sbjct: 423 GLLTRY-------QQAKTALQSLDELMQLPVERPE----GTRFLHRPRLQGEIEFRNVSF 471
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164
Y L ++ G+K+ I+GR GSGKSTL++ L L +P G +++D +DI
Sbjct: 472 AYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531
Query: 1165 IGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQ 1221
I DLR +G +PQDP LF GT+R N+ P D EI A + + + + VR
Sbjct: 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPD 589
Query: 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK 1281
L+ + E G + S GQRQ V+L RALL+ IL+LDE T+++D ++ + ++
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649
Query: 1282 DCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
T+ + HR +++D D ++V+ +GR+
Sbjct: 650 GKTLVLVTHR-TSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 2e-45
Identities = 102/360 (28%), Positives = 172/360 (47%), Gaps = 7/360 (1%)
Query: 967 TIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVS-FP 1025
T++ FG E+ R + L+ + + ++ L + + M +
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVE 193
Query: 1026 HGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDS 1085
G + L+ L+ S+ ++ + +E+++ + E V +
Sbjct: 194 EGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAE---VSDAP 250
Query: 1086 RPPSSWP-ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL 1144
P WP G + I++ Y P +L+GI+ P GK + IVG +G+GKST+++ L
Sbjct: 251 DAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLL 309
Query: 1145 FRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREI 1203
FR + G I ID DI + LR +GI+PQD LF TI N+ + + E+
Sbjct: 310 FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
A + +Q+ D ++ + +T V E G S G++Q V++ R +LK IL+LDEAT++
Sbjct: 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 1264 VDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323
+DT T+ IQ +R T IAHR+ T+ID+D ++VL +GR+ E T LL
Sbjct: 430 LDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489
|
Length = 497 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-42
Identities = 124/518 (23%), Positives = 211/518 (40%), Gaps = 58/518 (11%)
Query: 185 AKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQ 244
A+ VE + + V SAL ++ K LS + SG+++N + DV
Sbjct: 74 ARYVERLVSHDATF-------RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVD 126
Query: 245 RVGDYSWYLHDI--WMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEY 302
+ + YL I ++ L +I + I I L ++ +++ +P
Sbjct: 127 ALDNL--YLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFY---- 180
Query: 303 QDKLMAAKDERMRKTSECLRN--------MRILKLQAWEDRYRIQLEEMRGVEFRWLRKA 354
+ + + LR+ L + ED YR LE E WL+
Sbjct: 181 --RAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE---ATEASWLKAQ 235
Query: 355 LYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQ--------EPL 406
F + + G + + AQ+ AG++ A +L EPL
Sbjct: 236 RKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPL 295
Query: 407 RNFPDLVSMMAQTKVSLDRISGFL-QEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSS 465
P + Q S R++ L Q+ E+ T A+++ N F YP
Sbjct: 296 A--PGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTAT---TGQALELRNVSFT-YPGQ 349
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------- 515
L ++ + +G +VA+ G GSGKS+LL + G G + L G
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409
Query: 516 ---TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
T + ++Q + SG + +N+ +P + + L+K LE G T +G
Sbjct: 410 LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLG 469
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
+ G LSGG+++R+ LARAL DA ++LLD+P +D T ++ + KT++
Sbjct: 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL-ALLFEHAEGKTLLM 528
Query: 632 VTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDF 669
VTH++ L D I+VL G+II+ G + +LL +
Sbjct: 529 VTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRY 566
|
Length = 573 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-42
Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 22/376 (5%)
Query: 958 FGESIAGASTIRGFGQEKRF----MKRNLYLLDCFARPFFCSLAAIE-WLCLRMELLSTF 1012
F + + G + + FG E + L + A + L++
Sbjct: 201 FTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRK-----QARFTGLSDAILLLIAGL 255
Query: 1013 VFAFCMVLLVSF-PHGAIDPSMAGLAVTYGLNLNARLSRWILS---FCKLENKIISIERI 1068
+ ++ + + GA+ A LA+ L+ F L I S R+
Sbjct: 256 LVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFE--PLAPGAFQHLGQVIASARRL 313
Query: 1069 YQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIG 1128
+ I + P V + +EL ++ Y L G+K+
Sbjct: 314 ---NDILDQKPEVTFPDEQTA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVA 368
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTI 1188
I+GR+GSGKSTL+Q L +P G I ++ ++I+++ LR + ++ Q +LF GT+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 1189 RCNLDPLEEH-SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247
R NL SD E+W AL + L ++ L T + E G S G+R+ ++L RA
Sbjct: 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488
Query: 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDG 1307
LL A + +LDE T +D T+ + ++ + T+ + HR+ + D ++VL +G
Sbjct: 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
Query: 1308 RVAEFDTPGRLLEDKS 1323
++ E T LL +
Sbjct: 549 KIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 5e-42
Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 56/214 (26%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+ +N F YP +P L +S+ + G +VA+ G GSGKS+LL +L SGE+
Sbjct: 1 IEFKNVSFS-YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 512 RLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
+ G AYV Q ++ SG I ENIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 559 LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
SGGQ+QR+ +ARAL +D I +LD+ SA+D T L E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137
Query: 619 YIMTALANKTVIFVTHQVEFLPAADFILVLKEGR 652
+ KTVI + H++ + AD I+VL +GR
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 5e-42
Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 1082 IEDSRPPSSWPEN--------GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRT 1133
+ED+ P P G +E D+ Y N + ++ G+ + IVG T
Sbjct: 312 VEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYD-NSRQGVEDVSFEAKPGQTVAIVGPT 370
Query: 1134 GSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD 1193
G+GKSTLI L R+ +P GRI+ID DI T+ LR + ++ QD LF +I N+
Sbjct: 371 GAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIR 430
Query: 1194 -PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252
+ +D E+ A +++Q D + K +T V E G S G+RQ +++ RALLK
Sbjct: 431 VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490
Query: 1253 RILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE- 1311
IL+LDEAT+++D T+ ++ + K T IAHR+ TV ++D +LV +GRV E
Sbjct: 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVES 550
Query: 1312 --FD 1313
FD
Sbjct: 551 GSFD 554
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 5e-42
Identities = 133/564 (23%), Positives = 251/564 (44%), Gaps = 59/564 (10%)
Query: 776 LLIPLIILAQVLFQFLQIASNWWMAWAN----PQTEGDQPKVNPMVLLVVYMALAFGSSW 831
LI I++A ++ + IA ++++ P + + L++ Y+
Sbjct: 156 KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI---- 211
Query: 832 FIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIP 891
+++ L+ G + + + ++ +F PMSFF + G I++R + S++D
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIID---- 267
Query: 892 FRLGGFASTTIQL---------VGII-GVMTMVTWQVLLLVIPMAVACLWM-QKYYMASS 940
AST + L VG+ M+ + + LL IP+ + + ++ + +
Sbjct: 268 ----ALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLN 323
Query: 941 RELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEK-RFMKRNLYLLDCFARPFFCSLAAI 999
+ ++ ++ S II E + G TI+ E R+ K + F S
Sbjct: 324 HDAMQANAVLNSSII----EDLNGIETIKSLTSEAERYSK----IDSEFGDYLNKSFKYQ 375
Query: 1000 EWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW------IL 1053
+ + + + +V+L + GA L + + NA LS + I+
Sbjct: 376 KADQGQQAIKAVTKLILNVVILWT---GAYLVMRGKLTLGQLITFNALLSYFLTPLENII 432
Query: 1054 SF-CKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPE-NGTIELIDLKVRYGENLP 1111
+ KL+ ++ R+ + + E + + + NG I + D+ YG
Sbjct: 433 NLQPKLQAARVANNRLNEVYLVDSE----FINKKKRTELNNLNGDIVINDVSYSYGYGSN 488
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
+L I+ K IVG +GSGKSTL + L + G I+++ + I H LR
Sbjct: 489 -ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547
Query: 1172 SRLGIIPQDPNLFEGTIRCNL--DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
+ +PQ+P +F G+I NL E S EIW A + +++ D + +T + E
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT--EFKDCTVCT 1287
G + S GQ+Q ++L RALL +++L+LDE+T+++DT T+ +KI+ +D T+
Sbjct: 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQDKTIIF 664
Query: 1288 IAHRIPTVIDSDLVLVLSDGRVAE 1311
+AHR+ SD ++VL G++ E
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIE 688
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 7e-41
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I ++ RY + P++L I+ G+ +GIVGR+GSGKSTL + + R P GR++
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDRE-IWEALDKSQLGDI 1215
+D D++ LR ++G++ Q+ LF +IR N+ + E + EA + D
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1216 VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275
+ + +T V E G S GQRQ +++ RAL+ RIL+ DEAT+++D +++ I +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 1276 IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+ TV IAHR+ TV ++D ++V+ GR+ E + LL ++ ++ L
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 5e-40
Identities = 128/576 (22%), Positives = 242/576 (42%), Gaps = 61/576 (10%)
Query: 127 LAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILA------G 180
+ ++ + L V L L+ +D G + G
Sbjct: 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIG 62
Query: 181 IFFSAKLVETITTR--QWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNY 238
+ + ++T W + + VR ++ K L L +G +++
Sbjct: 63 LAVLRGICSFVSTYLLSWVSNKVVRDIRVR------MFEKLLGLPVSFFDRQPTGTLLSR 116
Query: 239 MAVDVQRVGDYSWYLHDIWMLPLQ---IILALAI--LYKNVGIASVATLIATIISIVVTV 293
+ D ++V + D +++ ++ ++ L I LY + + + ++ ++SI++
Sbjct: 117 ITFDSEQVASAA---TDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRR 173
Query: 294 PVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKL---QAWE-DRYRIQLEEMRGVEFR 349
V+K ++ + + E L+ R++KL QA+E R+ R + +
Sbjct: 174 -VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 350 WLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGA-QLTAGSVLSAMATFRILQEPLRN 408
S I + +A V F A LTAG + + L PL++
Sbjct: 233 MTSAGSISSPITQLIASLA---LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKS 289
Query: 409 FPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRP 468
++ + M + + + + L ++ T + R + ++ N F YP RP
Sbjct: 290 LTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGD--VEFRNVTFR-YPGRDRP 346
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA----------- 517
L IS+ ++ G VA+ G GSGKS+L++ I SG++ L G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 518 --AYVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
A VSQ + + I NI +G D+A+ ++ + A + ++ G T IG+
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL----ANKTV 629
G+ LSGGQ+QR+ +ARAL +DA I +LD+ SA+D SE + AL +T
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALD--NESE---RLVQAALERLMQGRTT 521
Query: 630 IFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
+ + H++ + AD I+V+ +GRI++ G +++LL
Sbjct: 522 LVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-40
Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 6/231 (2%)
Query: 1077 EAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSG 1136
+A P + P + ++E + V Y L ++ P G+++ +VG +G+G
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360
Query: 1137 KSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---D 1193
KSTL+ L ++P G I ++ + ++ R ++ +PQ P LF GTI N+
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420
Query: 1194 PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253
P + SD EI EAL+++ L + V Q L+TP+ E G S GQ Q ++L RA L+ A
Sbjct: 421 P--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 1254 ILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVL 1304
+L+LDE TA +D T+ + + +R + TV + HR+ +D ++VL
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-39
Identities = 134/528 (25%), Positives = 242/528 (45%), Gaps = 53/528 (10%)
Query: 817 VLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPM----SFFDSTPA 872
LLVV + LA G+ R LV G +++ + R+VF + SFFD +
Sbjct: 63 FLLVVALVLALGT----AARFYLVTWLG----ERVVADIRRAVFAHLISLSPSFFDKNRS 114
Query: 873 GRILNRVSID----QSVV--DLDIPFRLGGFASTTIQLVGIIGVMTMVTWQ---VLLLVI 923
G +++R++ D QSV+ L + R + +G + +M + + + ++LL +
Sbjct: 115 GEVVSRLTTDTTLLQSVIGSSLSMALR------NALMCIGGLIMMFITSPKLTSLVLLAV 168
Query: 924 PMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLY 983
P+ + + + + R+L R + + GE++ T++ FG E R
Sbjct: 169 PLVLLPILL---FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSR--- 222
Query: 984 LLDCFARPFFCSL-AAIEWLCLRMELLSTFVF-AFCMVLLVSFP------HGAIDPSMAG 1035
F + AA + + R L + + F ++ V + G + G
Sbjct: 223 ----FGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLG 278
Query: 1036 LAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENG 1095
V Y + + + + +L+ + ER+ + Q + P P G
Sbjct: 279 QFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPV--PLRG 336
Query: 1096 TIELIDLKVRYGENLP-LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IE + Y L G+ G+ + +VG +G+GKSTL Q L R +P GR
Sbjct: 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQ 1211
I++D +D+ + +LR+R+ ++PQDP LF ++ N+ P + +D E+ A +
Sbjct: 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAH 454
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
+ + + +T + E G S GQRQ +++ RA+LK A IL+LDEAT+++D ++ L
Sbjct: 455 AHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLL 1319
+Q+ + T K T IAHR+ TV+ +D ++V+ GR+ T L+
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 7e-39
Identities = 119/405 (29%), Positives = 186/405 (45%), Gaps = 26/405 (6%)
Query: 279 VATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRI 338
VA + + +++ P++++ EE M +R E L + +K E R++
Sbjct: 293 VAIPLILLPGLLLQRPLSRLAEES----MRESAQRNAVLVESLSGLETIKALNAEGRFQR 348
Query: 339 QLEEMRGVEFRW-LRKALYSQAFITFIFWSSPI-FVAAVTFGTSILLGAQLTAGSVLSA- 395
+ E+ R L+ S F + + VA V G ++ +LT G +++
Sbjct: 349 RWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACV 408
Query: 396 MATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIE 455
M + R L PL L++ Q K +L + +Q + + T L R I+
Sbjct: 409 MLSGRALA-PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFR 467
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
N F YP P L +S+ + G +VA+ G +GSGKS+LL +LG G V L G
Sbjct: 468 NVSFA-YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526
Query: 516 TAA-------------YVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLEL 561
YV Q + G + +NI G+P D + + + + +
Sbjct: 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRR 586
Query: 562 FSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE-LFKEYI 620
G IG+RG +LSGGQ+Q V LARAL +D I LLD+P SA+D SE FK+ +
Sbjct: 587 HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN--RSEERFKDRL 644
Query: 621 MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
LA KT++ VTH+ L D I+V+ GRI+ G D +L+A
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 9e-39
Identities = 142/534 (26%), Positives = 238/534 (44%), Gaps = 65/534 (12%)
Query: 816 MVLLVVYMALAFGSSWFIFVR--AVL-VATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPA 872
+ + + +A A G++ F + AVL + T A+ Q + + R P+SFF
Sbjct: 176 VQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQ---AAVWDRLLRLPVSFFRQYST 232
Query: 873 GRILNRVS-IDQSVVDLDIPFRLGGFASTTIQLVGII------GVMTMVTWQVLLLVIPM 925
G + +R I Q I L G ST L+ I G+M +W++ L+ + +
Sbjct: 233 GDLASRAMGISQ------IRRILSG--STLTTLLSGIFALLNLGLMFYYSWKLALVAVAL 284
Query: 926 A--------VACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRF 977
A V L + R L+ + I L + I G S +R G E R
Sbjct: 285 ALVAIAVTLVLGLLQVRK----ERRLLEL----SGKISGLTVQLINGISKLRVAGAENRA 336
Query: 978 MKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLA 1037
R +A+ F + L L + + + F VL V A+ + L
Sbjct: 337 FAR-------WAKLF----SRQRKLELSAQRIENLLTVFNAVLPV-LTSAALFAAAISLL 384
Query: 1038 VTYGLNL------NARLSRWILSFCKLENKIISIERI---YQYSQIPGEAPPVIEDSRPP 1088
GL+L N + + +L N +ISI + ++ ++ EA P +++++
Sbjct: 385 GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTD 444
Query: 1089 SSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148
+G IE+ + RY + PL+L ++ G+ + IVG +GSGKSTL++ L
Sbjct: 445 PG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503
Query: 1149 EPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALD 1208
P G + D D++ + + +R +LG++ Q+ L G+I N+ + E WEA
Sbjct: 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAAR 563
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
+ L + +R + T + E G S GQRQ + + RAL+++ RIL+ DEAT +A
Sbjct: 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT----SAL 619
Query: 1269 DNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
DN Q I+ + T IAHR+ T+ ++D + VL GRV + T L+
Sbjct: 620 DNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 1e-38
Identities = 141/532 (26%), Positives = 233/532 (43%), Gaps = 53/532 (9%)
Query: 817 VLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRIL 876
VL + +A+A +R L A +L ++ R + P+ +F+S G +
Sbjct: 180 VLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTV 239
Query: 877 NRV-SIDQ---------SVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMA 926
RV ++Q V LD+ F +V + VM + + +VI
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLF-----------VVVFLAVMFFYSPTLTGVVIGSL 288
Query: 927 VACLWMQKYYMASS------RELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKR 980
V Y + S R+ V + + ES+ G TI+ E +F R
Sbjct: 289 VC------YALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNR 342
Query: 981 NLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMA-GLAVT 1039
L + F +EL+ FA +LL H I +++ G V
Sbjct: 343 WDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFA---ILLWFGAHLVIGGALSPGQLVA 399
Query: 1040 YGLNLNARLSRWILSFCKL----ENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPE-N 1094
+ + L R+++ +L +L + I++ER+ P E ++ PE
Sbjct: 400 FNM-LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS---AGL--AALPELR 453
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G I +++ RY + P VL + G+ IGIVG +GSGKSTL + L RL P G+
Sbjct: 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQ 1211
+++D +D++ LR ++G++ Q+ LF +IR N+ +P + A +
Sbjct: 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAG 571
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
D + Q T V E G N S GQRQ +++ RAL+ RIL+ DEAT+++D ++ L
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323
I + +R + TV IAHR+ TV D ++VL G++AE LL +
Sbjct: 632 IMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQG 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 1e-38
Identities = 121/397 (30%), Positives = 191/397 (48%), Gaps = 54/397 (13%)
Query: 321 LRNMRILKLQAWEDRYRIQLEEMRGV--EFRW-----LRKALYSQAFITFIFWSSPIFVA 373
LR + L+L +R + E +R +FR LR A S A + F F S I +
Sbjct: 209 LRGLETLRLF---NRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEF-FASISIALV 264
Query: 374 AVTFGTSILLGAQLTAGSV---LSAMATFRIL------QEPLRNFPDLVSMM---AQTKV 421
AV FG S L +L G ++ A F +L +PLR DL + AQ
Sbjct: 265 AVYFGFSYL--GELNFGHYGTGVTLFAGFFVLILAPEFYQPLR---DLGTFYHAKAQAVG 319
Query: 422 SLDRISGFLQEEEL-QEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRG 480
+ + + FL+ + L +N + IE + + ++ + G
Sbjct: 320 AAESLVTFLETPLAHPQQGEKELA---SNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAG 376
Query: 481 MRVAVCGMVGSGKSSLLSCILGEIP-----KISG-EVRLCGTAAYVSQSAWI-QS----- 528
R+A+ G G+GK+SLL+ +LG +P KI+G E+R ++ +W+ Q+
Sbjct: 377 QRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 529 GNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G + +N+L G+P + ++ + + + L L G T IGD+ LS GQ QR+ L
Sbjct: 437 GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL 496
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL----ANKTVIFVTHQVEFLPAAD 643
ARAL Q + LLD+P +++DAH SE + +M AL +T + VTHQ+E L D
Sbjct: 497 ARALLQPCQLLLLDEPTASLDAH--SE---QLVMQALNAASRRQTTLMVTHQLEDLAQWD 551
Query: 644 FILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAI 680
I V+++G+I+Q G Y +L QAG F L++ E I
Sbjct: 552 QIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 1e-38
Identities = 118/489 (24%), Positives = 220/489 (44%), Gaps = 42/489 (8%)
Query: 854 KMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGII---GV 910
+ L + R P+ FF AG I +RV ++ V + F G A+T + V ++ +
Sbjct: 232 RFLWHILRLPVRFFAQRHAGDIASRVQLNDQVAE----FLSGQLATTALDAVMLVFYALL 287
Query: 911 MTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQK--SPIIHLFGESIAGAS-- 966
M + + L+ I A + + SR R+ + ++ L G +I+G
Sbjct: 288 MLLYDPVLTLIGIAFAAINVLALQL---VSR--RRVDANRRLQQDAGKLTGVAISGLQSI 342
Query: 967 -TIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTF-----VFAFCMVL 1020
T++ G E F R +A L A + L + ++L ++L
Sbjct: 343 ETLKASGLESDFFSR-------WAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALIL 395
Query: 1021 LVSFPHGAIDPSM-AGLAVTYGLNLNA------RLSRWILSFCKLENKIISIERIYQYSQ 1073
+V ++ + G+ V + +++ L + + +LE + ++ + +
Sbjct: 396 VVGGLR-VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454
Query: 1074 IPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRT 1133
P + S +G +EL ++ Y P ++ + G+++ +VG +
Sbjct: 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGS 514
Query: 1134 GSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD 1193
GSGKST+ + + L +P G I+ D I I L + + ++ QD LFEGT+R NL
Sbjct: 515 GSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574
Query: 1194 PLEEHS--DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ 1251
L + + D ++ A + + D++ + + + E G N S GQRQ + + RAL++
Sbjct: 575 -LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633
Query: 1252 ARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
IL+LDEAT+++D T+ +I +R + CT +AHR+ T+ D D ++VL G+V +
Sbjct: 634 PSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691
Query: 1312 FDTPGRLLE 1320
T L
Sbjct: 692 RGTHEELWA 700
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-37
Identities = 135/526 (25%), Positives = 238/526 (45%), Gaps = 59/526 (11%)
Query: 825 LAFGSSWFIFVRA----VLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVS 880
L+ SS +R +A L + LF RS+ R + FFD G + +R+S
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLF----RSLLRQDLGFFDENKTGELTSRLS 265
Query: 881 IDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQ---VLLLVIPMA-VACLWMQKYY 936
D + + + + L+G++G M ++ + V L+ +P+ +A K Y
Sbjct: 266 SDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325
Query: 937 MASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQE----KRFMKRNLYLLDCFARPF 992
S EL ++ K+ + E+++G T+R F E RF + L +
Sbjct: 326 QLLSEELQE--AVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKEA---LEETL---- 374
Query: 993 FCSLAAIEWLCLRMELLSTFVFAFCMVLLVSF--PHGAIDPSMA-GLAVTY-------GL 1042
L + L L +T V + +LV + + ++ G V++ G
Sbjct: 375 --QLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGE 432
Query: 1043 NLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDS---RPPSSWPENGTIEL 1099
+ + + + + E++++Y + P I + P G IE
Sbjct: 433 AVRVLSYVY----SGMMQAVGASEKVFEYL----DRKPNIPLTGTLAPL---NLEGLIEF 481
Query: 1100 IDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
D+ Y ++P VL G+T G+ + +VG +GSGKST+ L L +P G++++
Sbjct: 482 QDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIV 1216
D + + H L ++ ++ Q+P LF G++R N+ L + D EI A + D +
Sbjct: 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
+T V E G S GQ+Q +++ RAL+++ R+L+LDEAT+++D + L+Q+
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES- 659
Query: 1277 RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
TV IAHR+ TV +D +LVL G V E T +L+ED+
Sbjct: 660 -RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 22/232 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
++ +N F YP P L IS+ + G VA+ G GSGKS+L++ I SG +
Sbjct: 1 VEFKNVTFR-YPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 512 RLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
+ G VSQ ++ + + ENI +G P A ++V A
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANA 117
Query: 559 LEL---FSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE- 614
E G T+IG+RG+ LSGGQ+QR+ +ARAL +D I +LD+ SA+D T SE
Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD--TESER 175
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
L + + + N+T + H++ + AD I+VL++G+I++ G +++LL G
Sbjct: 176 LVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-37
Identities = 125/492 (25%), Positives = 194/492 (39%), Gaps = 81/492 (16%)
Query: 204 GMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDY-SWYLHDIWM---L 259
V+S L + L Q SGE+ V+ + Y + YL + + +
Sbjct: 72 AAAVKSQLRERLLEAVAALGPRWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIV 131
Query: 260 PLQIILALAILYKNVGIASVATLIATIISIVVTVPV------------AKVQEEYQDKLM 307
PL I+ A+ I+ +I +++T P+ + L
Sbjct: 132 PLAILAAVF----------PQDWISGLI-LLLTAPLIPIFMILIGWAAQAAARKQWAAL- 179
Query: 308 AAKDERM-RKTSECLRNMRILKLQAWEDRYRIQL----EEMRGVEFRWLRKALYSQAFIT 362
R+ + LR + LKL + EE R R LR A S A +
Sbjct: 180 ----SRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAVLE 235
Query: 363 FIFWSSPIFVA--AVTFGTSILLGAQLTAGSVLSAMATFRIL-----QEPLRNFPDLVSM 415
+ + VA AV G +L AG + A F +L PLR
Sbjct: 236 LF---ATLSVALVAVYIGFRLL------AGDLDLATGLFVLLLAPEFYLPLRQLGAQYHA 286
Query: 416 MAQTKVSLDRISGFLQEEEL----QEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLS 471
A + + + L + T +++ YP RP L
Sbjct: 287 RADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAP-----SLEFSGVSVA-YPGR-RPALR 339
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518
+S V G RVA+ G G+GKS+LL+ +LG + G + + G A
Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399
Query: 519 YVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577
+V Q ++ +G I ENI P A+ ++ + L + + G T IG+ G L
Sbjct: 400 WVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGL 459
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQV 636
SGGQ QR+ LARA +DA + LLD+P + +DA T +E+ + ALA +TV+ VTH++
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV--LEALRALAQGRTVLLVTHRL 517
Query: 637 EFLPAADFILVL 648
AD I+VL
Sbjct: 518 ALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-37
Identities = 68/214 (31%), Positives = 99/214 (46%), Gaps = 42/214 (19%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ ++ RY P VL ++ + G+ + I+G +GSGKSTL + + L+ P GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIV 1216
+D DIS ++L +G +PQD LF G+I N I+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN-----------------------IL 97
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLI-QKI 1275
G GQRQ + L RAL RILVLDE + +D + + Q I
Sbjct: 98 SG------------------GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1276 IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
+ T IAHR T+ +D +LVL DGRV
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-36
Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 32/261 (12%)
Query: 425 RISGFLQEEELQEDATIVLP--RGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMR 482
RI L E + +D + +P RG +V I+ +F YP + P L ++ + G
Sbjct: 289 RIRAMLAEAPVVKDGSEPVPEGRGELDVNIR----QFT-YPQTDHPALENVNFTLKPGQM 343
Query: 483 VAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------------AYVSQSAWIQSG 529
+ +CG GSGKS+LLS I G++R A VSQ+ ++ S
Sbjct: 344 LGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403
Query: 530 NIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588
+ NI G P + + + V S+ D+ G T +G+RG+ LSGGQKQR+ +A
Sbjct: 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463
Query: 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEY-IMTALA----NKTVIFVTHQVEFLPAAD 643
RAL +A+I +LDD SAVD T E+ I+ L +TVI H++ L A
Sbjct: 464 RALLLNAEILILDDALSAVDGRT------EHQILHNLRQWGEGRTVIISAHRLSALTEAS 517
Query: 644 FILVLKEGRIIQAGKYDDLLQ 664
ILV++ G I Q G +D L Q
Sbjct: 518 EILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-36
Identities = 83/311 (26%), Positives = 151/311 (48%), Gaps = 4/311 (1%)
Query: 124 SLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFF 183
SL + + F L+ + + P L+ YFV +L G L F
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 184 SAKLVETITTRQWYLGVDI-LGMHVRSALTAMVYRKGLKLS--SLAKQSHTSGEIVNYMA 240
+L+++ + + I G+ RSAL A+++ K +S SLA+ +G I+N M+
Sbjct: 293 LTQLIQS-VCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMS 351
Query: 241 VDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQE 300
DV+R+ + Y +W P+ ++L++ +L + VG ++ + ++++ + + K Q
Sbjct: 352 TDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQM 411
Query: 301 EYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF 360
+ K+ A D R++ T+E +RI K AWE + +E+ R E R+LR ++
Sbjct: 412 AARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVA 471
Query: 361 ITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTK 420
+F+ ++P + AV F LLG +LT V +A +L+ P P + + + Q
Sbjct: 472 TSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFL 531
Query: 421 VSLDRISGFLQ 431
VS+ RIS FL+
Sbjct: 532 VSIKRISTFLE 542
|
Length = 1560 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 3e-36
Identities = 91/264 (34%), Positives = 142/264 (53%), Gaps = 12/264 (4%)
Query: 1082 IEDSRPPSSWPE----NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGK 1137
+ P+ PE G +E + + N + ++ G+ + IVG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEFA-NSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1138 STLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLE 1196
+TLI L R+ +P G+I+ID IDI+T+ LR + + QD LF +IR N+ E
Sbjct: 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE 434
Query: 1197 EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
+D E++EA + D + + +T V E G+ S G+RQ +++ RA+LK A ILV
Sbjct: 435 GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494
Query: 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPG 1316
LDEAT+++D T+ ++ I K+ T IAHR+ TV ++DLVL L GR+ E +
Sbjct: 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554
Query: 1317 RLLEDKSSMFLKLVTEYSSRSSGI 1340
L++ K F KL+ R SG+
Sbjct: 555 ELIQ-KDGRFYKLL-----RRSGL 572
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-35
Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
Query: 1062 IISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAF 1121
+ ERI + G + T+EL DL Y P VL G++
Sbjct: 301 RAAAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDL 358
Query: 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181
P G+++ I+G +GSGKSTL+ L L++P G + +D + +S++ ++R R+ + QD
Sbjct: 359 PPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDA 418
Query: 1182 NLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240
+LF+ T+R NL + +D E+W AL++ L D +R L+T + E G S G+RQ
Sbjct: 419 HLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQ 478
Query: 1241 LVSLGRALLKQARILVLDEATASVDTAT 1268
++L RALL A IL+LDE T +D T
Sbjct: 479 RLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 21/231 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+ EN F + +P L I+ + G VA+ G G+GK++L++ ++ G++
Sbjct: 3 IEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 512 RLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
+ G V Q ++ SG I ENI G P A ++VI A
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAGA 118
Query: 559 LELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ G T++G+ G NLS G++Q + +ARA+ +D I +LD+ S +D T +L
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKL 177
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
+E + + +T I + H++ + AD ILVL +G+II+ G +D+LL
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-35
Identities = 95/294 (32%), Positives = 135/294 (45%), Gaps = 29/294 (9%)
Query: 389 AGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMT 448
AGS+L R L P+ + + + R++ L ++ A + LP
Sbjct: 262 AGSILVG----RALA-PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPE--P 313
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
+ +EN P +PTL GIS + G +A+ G GSGKS+L I+G P S
Sbjct: 314 EGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372
Query: 509 GEVRLCGTA-------------AYVSQSAWIQSGNIEENIL-FGSPMDKAKYKKVIHACS 554
G VRL G Y+ Q + G + ENI FG + A +K+I A
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG---ENADPEKIIEAAK 429
Query: 555 LKKDLEL---FSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
L EL G T+IG G LSGGQ+QR+ LARALY D + +LD+P S +D
Sbjct: 430 LAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489
Query: 612 GSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
L TV+ +TH+ L D ILVL++GRI + G+ D++L
Sbjct: 490 EQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-35
Identities = 80/222 (36%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
I+ N F YP+ P L +S+ + G +VA+ G VGSGKS+LL + G SG
Sbjct: 2 RIEFRNVSFS-YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 511 VRLCGTAA-------------YVSQSAWIQSGNIEENILFGSPM-DKAKYKKVIHACSLK 556
V L GT YV Q + G + +NI G+P+ D + + +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE-L 615
+ +G IG+RG LSGGQ+Q V LARAL D I LLD+P SA+D SE
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD--MNSEER 178
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAG 657
KE + L +KT+I +TH+ L D I+V+ GRI+ G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 1e-34
Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 2/231 (0%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
G IE ++ Y L I P GK + +VGR+GSGKST+ L R + G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL--DPLEEHSDREIWEALDKSQ 1211
I++D D+ L LR+++ ++ Q+ +LF TI N+ E++S +I EA +
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAY 458
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
D + D L+T + ENG S GQRQ +++ RALL+ + IL+LDEAT+++DT ++
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
IQ + K+ T IAHR+ T+ +D +LV+ DG + E T LL
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 7e-34
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+ EN F + P RP L +S + G +VA+ G GSGKS++L + SG +
Sbjct: 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK- 557
+ G V Q + + I NI +G P A ++VI A +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQI 116
Query: 558 --DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ F G TI+G+RG+ LSGG+KQRV +ARA+ ++ I LLD+ SA+D HT E+
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
+ +T I + H++ + AD I+VLK+GRI++ G +++LL G
Sbjct: 177 QAA-LRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
LVL ++ G+ +VG +GSGKST++ L +P G++++D IS L
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87
Query: 1172 SRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
S++ ++ Q+P LF +++ N+ L+ S + EA K+ + +T V E
Sbjct: 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK 147
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G S GQ+Q V++ RAL++ ++L+LDEAT+++D ++ +Q+ + + TV IAH
Sbjct: 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
Query: 1291 RIPTVIDSDLVLVLSDGRV 1309
R+ TV +D +LVL GR+
Sbjct: 208 RLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 27/244 (11%)
Query: 452 IQIENAEFCWYPSSSRPT---LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
I+ +N F YPS RP L G+S+ + G VA+ G G GKS+++S + S
Sbjct: 1 IEFKNVSFR-YPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS 57
Query: 509 GEVRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL 555
GE+ L G VSQ + G I ENI +G P A ++V A
Sbjct: 58 GEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKK 115
Query: 556 K---KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG 612
+ G T++G+RG LSGGQKQR+ +ARAL ++ I LLD+ SA+DA
Sbjct: 116 ANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE-- 173
Query: 613 SE-LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
SE L +E + A+ +T I + H++ + AD I VL+ G++++ G +D+L+ +
Sbjct: 174 SEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233
Query: 672 LVSA 675
LV A
Sbjct: 234 LVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-33
Identities = 95/344 (27%), Positives = 161/344 (46%), Gaps = 41/344 (11%)
Query: 353 KALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDL 412
KA+ I W G +++ +LT G +++ A PL N +L
Sbjct: 385 KAVTKLILNVVILW----------TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINL 434
Query: 413 VSMMAQTKVSLDRISG-FLQEEEL----QEDATIVLPRGMTNVAIQIENAEFCWYPSSSR 467
+ +V+ +R++ +L + E + L N I I + + +
Sbjct: 435 QPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNL-----NGDIVINDVSYSY--GYGS 487
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---------- 517
LS IS+ + + + GM GSGKS+L ++G SGE+ L G +
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547
Query: 518 ---AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL---KKDLELFSHGDQTIIG 571
Y+ Q +I SG+I EN+L G+ + ++ AC + K D+E G QT +
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
+ G ++SGGQKQR+ LARAL D+ + +LD+ S +D T ++ + L +KT+IF
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN--LLNLQDKTIIF 664
Query: 632 VTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
V H++ +D I+VL G+II+ G +D+LL + +L+
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-33
Identities = 97/295 (32%), Positives = 135/295 (45%), Gaps = 31/295 (10%)
Query: 389 AGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMT 448
AGS+LS R L P+ + S R++ L E + LP
Sbjct: 280 AGSILSG----RALA-PIDLAIANWKQFVAARQSYKRLNELL-AELPAAAERMPLPA--P 331
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
A+ +E P +P L GIS + G + + G GSGKS+L ++G P S
Sbjct: 332 QGALSVERLTAA-PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 509 GEVRLCGTA-------------AYVSQSAWIQSGNIEENIL-FGSPMDKAKYKKVIHACS 554
G VRL G Y+ Q + G I ENI FG ++A +KVI A
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG---EEADPEKVIEAAR 447
Query: 555 LKKDLEL---FSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
L EL G T IG+ G LSGGQ+QR+ LARALY D + +LD+P S +D+
Sbjct: 448 LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-E 506
Query: 612 GSELFKEYIMTALANK-TVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
G I+ A A TV+ + H+ L + D ILVL++GRI G +++L
Sbjct: 507 GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-32
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 24/248 (9%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
IE+ +L +YG + L G++ G+ G++G G+GK+TL++ L L++P G I
Sbjct: 4 VIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD-------PLEEHSDREIWEAL 1207
++ D+ +R R+G +PQ+P+L+ T+R NL+ +E ++ I E L
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+ L D K + L S G +Q +S+ ALL +L+LDE T+ +D
Sbjct: 122 ELFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 1268 TDNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324
+ I +++R K+ T+ H + + D V++L+DG++ TP L E
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 1325 MFLKLVTE 1332
+ +
Sbjct: 231 KGVIELEP 238
|
Length = 293 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-32
Identities = 109/372 (29%), Positives = 168/372 (45%), Gaps = 68/372 (18%)
Query: 333 EDRYRIQLEEMRGVEFRWLRK--------ALYSQAFITF--------IFWSSPIFVAAVT 376
EDRYR QLE+ E +WL L SQA + + W +AA
Sbjct: 219 EDRYRQQLEQ---TEQQWLAAQRRQANLTGL-SQALMILANGLTVVLMLW-----LAAGG 269
Query: 377 FGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE--- 433
G + GA L A V +A+A F L P+ + Q S RI+ +++
Sbjct: 270 VGGNAQPGA-LIALFVFAALAAFEALM-PV---AGAFQHLGQVIASARRINEITEQKPEV 324
Query: 434 ELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGK 493
+T + ++ + N F YP +P L G+S+++ G +VA+ G G GK
Sbjct: 325 TFPTTSTAAADQV----SLTLNNVSFT-YPDQPQPVLKGLSLQIKAGEKVALLGRTGCGK 379
Query: 494 SSLLSCILGEIPKISGEVRLCGT--AAY-----------VSQSAWIQSGNIEENILFGSP 540
S+LL + GE+ L G A Y VSQ + S + +N+L +P
Sbjct: 380 STLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP 439
Query: 541 -MDKAKYKKVIHACSLKKDLELFSHGDQ---TIIGDRGINLSGGQKQRVQLARALYQDAD 596
+V+ L+K LE D+ +G+ G LSGG+++R+ +ARAL DA
Sbjct: 440 NASDEALIEVLQQVGLEKLLE----DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495
Query: 597 IYLLDDPFSAVDAHTGSELFKEYIMTAL----ANKTVIFVTHQVEFLPAADFILVLKEGR 652
+ LLD+P +DA T + I+ L NKTV+ +TH++ L D I V+ G+
Sbjct: 496 LLLLDEPTEGLDAETERQ-----ILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550
Query: 653 IIQAGKYDDLLQ 664
II+ G + +LL
Sbjct: 551 IIEQGTHQELLA 562
|
Length = 574 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 42/230 (18%)
Query: 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
++E+ + P L +S +V G +A+ G G+GKS+LL ILG + SG +R
Sbjct: 1 EVEDLTVSY---GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 513 LCGT--------AAYVSQSAWIQSG---NIEENIL--------FGSPMDKAKYKKVIHAC 553
+ G YV Q I ++ + +L + KA KV A
Sbjct: 58 VFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA- 116
Query: 554 SLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
L++ + L D+ I LSGGQ+QRV LARAL QD D+ LLD+PF+ VD T
Sbjct: 117 -LER-VGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-- 167
Query: 614 ELFKEYIMTALA-----NKTVIFVTHQVE-FLPAADFILVLKEGRIIQAG 657
+E I L T++ VTH + L D +L+L ++ +G
Sbjct: 168 ---QEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-31
Identities = 58/193 (30%), Positives = 111/193 (57%), Gaps = 6/193 (3%)
Query: 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181
P G++I +VG +G+GK++L+ AL + P G + I+ I++ + R L + Q+P
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNP 432
Query: 1182 NLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238
L GT+R N+ +P + SD ++ +AL+ + + + + Q L+TP+ + SVGQ
Sbjct: 433 QLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQ 490
Query: 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDS 1298
Q ++L RALL+ ++L+LDE TAS+D ++ L+ + + + T + H++ +
Sbjct: 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQW 550
Query: 1299 DLVLVLSDGRVAE 1311
D + V+ DG++ +
Sbjct: 551 DQIWVMQDGQIVQ 563
|
Length = 588 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 9e-31
Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 22/261 (8%)
Query: 424 DRISGFLQEE-ELQEDATIVLPRGMTNVAIQIENAEFCWYPS-SSRPTLSGISMKVDRGM 481
+R+ LQ E +++ A I+ E F YP+ +P L G+++ V G
Sbjct: 309 ERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFA-YPARPDQPALDGLNLTVRPGE 367
Query: 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------AAYVSQSAWIQS 528
VA+ G G+GKS+L +L SG + L G A V Q + +
Sbjct: 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA 427
Query: 529 GNIEENILFGSPMDKAKYKKVIHACSLKKDLEL---FSHGDQTIIGDRGINLSGGQKQRV 585
++ ENI +G P A ++V A E G T +G+RG+ LSGGQ+QR+
Sbjct: 428 ASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485
Query: 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFI 645
+ARA+ +DA I LLD+ SA+DA + +L ++ + T + +T + + H++ + AD I
Sbjct: 486 AIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKADRI 544
Query: 646 LVLKEGRIIQAGKYDDLLQAG 666
+V+ +GRI+ G + +L+ G
Sbjct: 545 VVMDQGRIVAQGTHAELIAKG 565
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+ +N Y + P L IS + G +V + G GSGKSSLL + + SG +
Sbjct: 3 IEFKNVSLR-YRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61
Query: 512 RLCGTA-------------AYVSQSAWIQSGNIEENI-LFGSPMDKAKYKKVIHACSLKK 557
+ G + + Q + SG I N+ FG D+ ++ + LK+
Sbjct: 62 LIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ-ALERVGLKE 120
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
+E G T++ + G NLS GQ+Q + LARAL + + I +LD+ ++VD T L +
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQ 179
Query: 618 EYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAG 657
+ I A + TV+ + H+++ + +D ILVL +GR+++
Sbjct: 180 KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 31/221 (14%)
Query: 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
+++N F YP +RP L IS+ + +G V + G GSGKS+LL + G + SGEV
Sbjct: 1 ELKNLSFS-YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 513 LCGT-------------AAYVSQSAWIQ--SGNIEENILFG---SPMDKAKYKKVIHACS 554
+ G V Q+ Q +EE + FG + + + ++ +
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ + L D++ LSGGQKQRV +A L D DI LLD+P + +D E
Sbjct: 120 --ELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 615 LFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGR 652
L + ++ L KT+I VTH ++ L AD ++VL++G+
Sbjct: 173 LLE--LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PA 1151
IEL DL V YG+ L I+ P G+ ++G +G GKSTL++ L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1152 CGRIIIDNIDISTIGLHD--LRSRLGIIPQDPNLFEGTIRCNLD--------PLEEHSDR 1201
G +++D DI + + LR R+G++ Q PN F G+I N+ L+E D
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ EAL K+ L D V KD+ + S GQ+Q + L RAL + +L+LDE T
Sbjct: 119 RVEEALRKAALWDEV--KDRL-------HALGLSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1262 ASVDTATDNLIQKIIRTEFKDCTVCTIAH------RIPTVIDSDLVLVLSDGRVAEFDTP 1315
+++D + I+++I K+ T+ + H R+ +D L +GR+ EF
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPT 224
Query: 1316 GRL 1318
++
Sbjct: 225 EQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-30
Identities = 105/472 (22%), Positives = 184/472 (38%), Gaps = 71/472 (15%)
Query: 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIIL 265
+R + + R+ L ++ G+++ + DV + D Y+ ++P +
Sbjct: 87 ALRVRVYERLARQALAGRRRLRR----GDLLGRLGADVDALQDL--YVR--VIVPA--GV 136
Query: 266 ALAILYKNVGIASVA-----------TLIATIISIVVTVP-----VAKVQEEYQDKLMAA 309
AL VG A+VA L A ++ P A+ E+ +L
Sbjct: 137 ALV-----VGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGE 191
Query: 310 KDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSP 369
++ + + Q+EE + R A A T + +
Sbjct: 192 LAAQLTDALDGAAELVASGAL---PAALAQVEE---ADRELTR-AERRAAAATALGAALT 244
Query: 370 IFVAAVTFGTSILLG-AQLTAGS---------VLSAMATFRILQEPLRNFPDLVSMMAQT 419
+ A + ++ G + G VL +A F E P + +
Sbjct: 245 LLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAF----EAFAALPAAAQQLTRV 300
Query: 420 KVSLDRISGFLQEEELQEDATI--VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKV 477
+ + +RI L + + G+ +++ + + + P L G+S+ +
Sbjct: 301 RAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDL 358
Query: 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAAYVSQSA 524
G RVA+ G GSGKS+LL+ + G + + GEV L G + +Q A
Sbjct: 359 PPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDA 418
Query: 525 WIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583
+ + EN+ P + + L L G T++G+ G LSGG++Q
Sbjct: 419 HLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQ 478
Query: 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
R+ LARAL DA I LLD+P +DA T EL E ++ AL+ +TV+ +TH
Sbjct: 479 RLALARALLADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 8e-30
Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 35/363 (9%)
Query: 332 WEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGS 391
+++R+ QL FR + I I F + FG +++G L+ G
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELI--QKLTFAILLWFGAHLVIGGALSPGQ 396
Query: 392 VLS-AMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQE-EELQEDATIVLPRGMTN 449
+++ M R+ Q LR L QT ++L+R+ L E + LP
Sbjct: 397 LVAFNMLAGRVTQPVLR-LAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE--LR 453
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
AI EN F + P S LS +++ + G + + G GSGKS+L + G
Sbjct: 454 GAITFENIRFRYAPDSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512
Query: 510 EVRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLK 556
+V + G ++ AW++ S +I +NI +P A ++ VIHA L
Sbjct: 513 QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLA 570
Query: 557 KDLELFS---HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
+ S G T +G++G NLSGGQ+QR+ +ARAL + I + D+ SA+D S
Sbjct: 571 GAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE--S 628
Query: 614 ELFKEYIMTAL----ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDF 669
E IM + +TVI + H++ + A D I+VL++G+I ++G++++LL +
Sbjct: 629 E---ALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLY 685
Query: 670 NAL 672
L
Sbjct: 686 ARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-30
Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 51/260 (19%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------- 517
+P L +S + +G + G GSGKS+LL C+ G + SGEV L G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 518 -----AYVSQSAWIQSGNI--EENILFG-----------SPMDKAKYKKVIHACSLKKDL 559
AYV QS + E +L G S D+ ++ + L+
Sbjct: 74 LAKKLAYVPQSP-SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH-- 130
Query: 560 ELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
+ DR ++ LSGG++QRV +ARAL Q+ I LLD+P S +D E+ +
Sbjct: 131 ----------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE- 179
Query: 619 YIMTALA---NKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAGT-----DF 669
++ L TV+ V H + AD +++LK+G+I+ G +++L
Sbjct: 180 -LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGV 238
Query: 670 NALVSAHHEAIEAMDIPNHS 689
+A V ++ + + IP S
Sbjct: 239 DADVIEDPDSGKPVVIPLGS 258
|
Length = 258 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-29
Identities = 113/430 (26%), Positives = 183/430 (42%), Gaps = 42/430 (9%)
Query: 270 LYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKL 329
Y + +A VA +A + I VT+ + +Q + +L+ + T + + + L++
Sbjct: 271 FYYSWKLALVAVALALVA-IAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRV 329
Query: 330 QAWEDR--YRI--QLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGA 385
E+R R R +E R F + P+ +A F +I L
Sbjct: 330 AGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVL----PVLTSAALFAAAISLLG 385
Query: 386 Q--LTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVL 443
L+ GS L+ F + + + + +R L E L E
Sbjct: 386 GAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL--EALPEVDEAKT 443
Query: 444 PRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG- 502
G + AI+++ F Y L +S++++ G VA+ G GSGKS+LL +LG
Sbjct: 444 DPGKLSGAIEVDRVTF-RYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502
Query: 503 EIPKISGEV----------------RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKY 546
E P+ SG V R G V Q+ + SG+I ENI G+P+ +
Sbjct: 503 ETPE-SGSVFYDGQDLAGLDVQAVRRQLGV---VLQNGRLMSGSIFENIAGGAPLTLDEA 558
Query: 547 KKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSA 606
+ L +D+ G T+I + G LSGGQ+QR+ +ARAL + I L D+ SA
Sbjct: 559 WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618
Query: 607 VDAHTGSELFKEYIMTALA--NKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+D T + + +L T I + H++ + AD I VL GR++Q G YD+L+
Sbjct: 619 LDNRT-----QAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673
Query: 665 AGTDFNALVS 674
F L
Sbjct: 674 REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-29
Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 12/254 (4%)
Query: 1062 IISIERIYQYSQIPGEAPPVI--EDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITC 1119
I S RI ++I + P V S + ++ L ++ Y + VL G++
Sbjct: 308 IASARRI---NEITEQKPEVTFPTTSTAA---ADQVSLTLNNVSFTYPDQPQPVLKGLSL 361
Query: 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ 1179
G+K+ ++GRTG GKSTL+Q L R +P G I+++ I+ LR + ++ Q
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 1180 DPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238
+LF T+R NL SD + E L + L ++ D+ L + E G S G+
Sbjct: 422 RVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGE 480
Query: 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDS 1298
++ + + RALL A +L+LDE T +D T+ I +++ ++ TV I HR+ T ++
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL-TGLEQ 539
Query: 1299 -DLVLVLSDGRVAE 1311
D + V+ +G++ E
Sbjct: 540 FDRICVMDNGQIIE 553
|
Length = 574 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 1e-29
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IEL L +G VL G+ G+ + I+G +GSGKSTL++ + L+ P G ++
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1157 IDNIDI---STIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLEEHSDREIWEALDKSQ 1211
ID DI S L+ LR R+G++ Q LF+ T+ N+ PL EH+ L + +
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR------LSEEE 112
Query: 1212 LGDIVRGKDQKLETPVLENGDNW-----SVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+ +IV +KLE L ++ S G ++ V+L RAL +L+ DE TA +D
Sbjct: 113 IREIVL---EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169
Query: 1267 ATDNLIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315
+I +IR+ + T + H + T +D + VL DG++ TP
Sbjct: 170 IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---------- 517
L +S+ V+ G +A+ G G GK++LL I G SGE+ + G
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 518 -AYVSQS-AWIQSGNIEENILFG---SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
V Q A + ENI FG + KA+ + + LE +
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL--------LN 125
Query: 573 RGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN----- 626
R + LSGGQ+QRV LARAL ++ + LLD+P SA+DA +E + L
Sbjct: 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-----REELREELKELQREL 180
Query: 627 -KTVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
T I+VTH Q E L AD I V+ EGRI+Q G
Sbjct: 181 GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-29
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 58/213 (27%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
E+ +L RYG L ++ G+ + +VG GSGKSTL++A+ L++P G I+I
Sbjct: 1 EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVR 1217
D DI+ + L +LR R+G +P QL
Sbjct: 59 DGKDIAKLPLEELRRRIGYVP--------------------------------QL----- 81
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
S GQRQ V+L RALL +L+LDE T+ +D A+ + +++R
Sbjct: 82 -----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1278 TEFKD-CTVCTIAHRIPTVID-SDLVLVLSDGR 1308
++ TV + H +D V+VL DG+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-29
Identities = 78/263 (29%), Positives = 121/263 (46%), Gaps = 41/263 (15%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
I++EN + +RP L IS+ V++G A+ G G+GKS+LL ILG + SGE
Sbjct: 4 MIEVENLTVSY---GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 511 VRLCG----------TAAYVSQSAWI------------QSGNIEENILFGSPMDKAKYKK 548
+++ G YV Q + + G + F K K +K
Sbjct: 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK-EK 119
Query: 549 VIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD 608
V A L++ + + D+ I G LSGGQKQRV LARAL Q+ D+ LLD+PF+ VD
Sbjct: 120 VDEA--LER-VGMEDLRDRQI----G-ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 609 AHTGSELFKEYIMTALA--NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
E++ ++ L KTV+ VTH + + A D ++ L +I +G +++L
Sbjct: 172 VAGQKEIYD--LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228
Query: 666 GTDFNALVSAHHEAIEAMDIPNH 688
+ A +H
Sbjct: 229 -ENLEKAFGGSLAHALAGYRHHH 250
|
Length = 254 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 17/238 (7%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE +L RY L ++ G+++ ++G GSGKSTL++ L L++P G ++
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1157 IDNIDISTI-GLHDLRSRLGIIPQDPN--LFEGTIRCNLD--PLEEHSDREIWEALDKSQ 1211
+D +D S+ L +LR ++G++ Q+P+ LF T+ + RE E
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
L + G ++ L+ P N S GQ+Q V++ L IL+LDE TA +D
Sbjct: 123 LELV--GLEELLDRPPF----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 1272 IQKIIRTEFKDC---TVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
+ ++++ + K+ T+ + H + V++ +D V+VL DG++ P + D +
Sbjct: 177 LLELLK-KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 9e-29
Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 24/223 (10%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
EL +L Y + L I+ G+ + IVG GSGKSTL++ L L+ P G +++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIWEALD 1208
D D++ + L +LR ++G++ Q+P+ F T+ NL EE + + EAL+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
L + +D+ T L S GQ+Q V++ L IL+LDE TA +D A
Sbjct: 121 LVGLEGL---RDRSPFT--L------SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 1269 DNLIQKIIRTEFKDC--TVCTIAHRIPTVID-SDLVLVLSDGR 1308
+ ++++ + K T+ + H + +++ +D V+VL DG+
Sbjct: 170 RRELLELLK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 9e-29
Identities = 52/272 (19%), Positives = 109/272 (40%), Gaps = 10/272 (3%)
Query: 142 VFAGLNTIVSYVGPYLVSYFVDYL-GGKETFPHEGYILAGIFFSAKLVETITTRQWYLGV 200
+ L + V P L+ F+D L G LA + + +++ + + +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLG 65
Query: 201 DILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLP 260
+ LG +R L + R+ L L +++ GE+ + + DV ++ D ++
Sbjct: 66 ERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQS 125
Query: 261 LQIILALAILYKNVG-IASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSE 319
L ++ I+ G ++ L + I+++ +AK + K A + E
Sbjct: 126 LATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEE 185
Query: 320 CLRNMRILKLQAWED----RYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPI-FVAA 374
L +R +K E+ RY LE+ ++KA+ + S + + A
Sbjct: 186 SLSGIRTVKAFGREEYELERYDKALEDAE---KAGIKKAITAGLSFGITQLISYLSYALA 242
Query: 375 VTFGTSILLGAQLTAGSVLSAMATFRILQEPL 406
+ FG +++ L+ G+V + ++ L PL
Sbjct: 243 LWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+ I N F YP + L +S+++ +G ++A+ G GSGKS+LL + G++ GE+
Sbjct: 1 LSINNVSFS-YPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 512 RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
L G + + I L + LF D T+
Sbjct: 60 TLDGVPVSDLE------KALSSLI-----------------SVLNQRPYLF---DTTLRN 93
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
+ G SGG++QR+ LAR L QDA I LLD+P +D T +L I L +KT+I+
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLKDKTLIW 152
Query: 632 VTHQVEFLPAADFILVLKEGRIIQAG 657
+TH + + D IL L+ G+II G
Sbjct: 153 ITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 74/220 (33%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 462 YPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-- 517
Y L IS+ V+ G VA+ G G GKS+LL I G SGEV + G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT 69
Query: 518 ------AYVSQSA----WIQSGNIEENILFG---SPMDKAKYKKVIHACSLKKDLELFSH 564
YV Q W+ + +N+ G + KA+ ++ L F +
Sbjct: 70 GPGPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN 126
Query: 565 G--DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
Q LSGG +QRV LARAL D D+ LLD+PFSA+DA T +L +E ++
Sbjct: 127 AYPHQ---------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLD 176
Query: 623 ALA--NKTVIFVTHQVE---FLPAADFILVLKE--GRIIQ 655
KTV+ VTH ++ FL AD ++VL GRI+
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFL--ADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-28
Identities = 64/210 (30%), Positives = 90/210 (42%), Gaps = 58/210 (27%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------- 517
R L +S+ ++ G V + G G+GKS+LL + G + SGE+ L G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 518 -----AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
AYV Q + L L D
Sbjct: 71 LARKIAYVPQ--------------------------ALELLGLA-HLA-----------D 92
Query: 573 RGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA---NKT 628
R N LSGG++QRV LARAL Q+ I LLD+P S +D EL + ++ LA KT
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE--LLRRLARERGKT 150
Query: 629 VIFVTHQVEF-LPAADFILVLKEGRIIQAG 657
V+ V H + AD +++LK+GRI+ G
Sbjct: 151 VVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-28
Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 2/204 (0%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+L GI+ A G+ +GI+G +GSGKSTL + L + P G + +D D+ L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDRE-IWEALDKSQLGDIVRGKDQKLETPVLENG 1231
+G +PQD LF+GTI N+ E +D E + EA + + +++ Q +T + E G
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN-LIQKIIRTEFKDCTVCTIAH 1290
S GQRQ ++L RAL ++VLDE +++D+ + L I+ + + TV IAH
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 1291 RIPTVIDSDLVLVLSDGRVAEFDT 1314
R + D +LVL DGR+A F
Sbjct: 531 RPSALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-28
Identities = 61/190 (32%), Positives = 85/190 (44%), Gaps = 46/190 (24%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525
R L +S+ + G VA+ G GSGKS+LL I G + SGE+ + G
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG---------- 60
Query: 526 IQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585
K I L++ + Q LSGGQ+QRV
Sbjct: 61 ----------------------KDIAKLPLEELRRRIGYVPQ---------LSGGQRQRV 89
Query: 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTVIFVTHQVEFL-PAA 642
LARAL + D+ LLD+P S +D + L ++ LA +TVI VTH E AA
Sbjct: 90 ALARALLLNPDLLLLDEPTSGLDPASRERL--LELLRELAEEGRTVIIVTHDPELAELAA 147
Query: 643 DFILVLKEGR 652
D ++VLK+G+
Sbjct: 148 DRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 8e-28
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 20/238 (8%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I E+ F Y L IS+++ G V + G GSGKS+L I +G V
Sbjct: 1 ITFEHVRF-RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
+ G V Q + + +I +NI P ++VI A L
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGA 117
Query: 559 LELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D + +
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALV 673
+ + A +TVI + H++ + AD I+V+++GRI++ G +D+LL + L
Sbjct: 178 MRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-27
Identities = 72/203 (35%), Positives = 101/203 (49%), Gaps = 31/203 (15%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+++EN F YP + P L +S ++ G +A+ G GSGKS+L ILG + SG V
Sbjct: 1 LEVENVSFR-YPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 512 RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
RL G +SQ + G+ H L +D ELFS +I
Sbjct: 60 RLDGAD--ISQWDPNELGD--------------------HVGYLPQDDELFS---GSI-- 92
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKTVI 630
LSGGQ+QR+ LARALY + I +LD+P S +D G + I A T I
Sbjct: 93 -AENILSGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRI 150
Query: 631 FVTHQVEFLPAADFILVLKEGRI 653
+ H+ E L +AD ILVL++GR+
Sbjct: 151 VIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 39/215 (18%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ + ++ Y E VL ++ G+KI ++GR+GSGKSTL+Q L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIV 1216
+D + +S + L S + ++ Q P LF+ T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
G +S G+RQ ++L R LL+ A I++LDE T +D T+ + +I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1277 RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
KD T+ I H + + D +L L +G++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-27
Identities = 114/493 (23%), Positives = 222/493 (45%), Gaps = 37/493 (7%)
Query: 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDY-SWYLHDIWMLPLQII 264
+ + ++R L+ + +GE+ + ++ D Q + S ++ + + ++
Sbjct: 231 RINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLL 290
Query: 265 LALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNM 324
L + ++ TLI + + K + ++L A + + E L M
Sbjct: 291 GLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGM 350
Query: 325 RILKLQAWE----DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSP-----IFVAAV 375
R ++ A E R++ LEE + RKAL A+ + W++ I V +
Sbjct: 351 RTVRSFAAEEGEASRFKEALEETLQL---NKRKAL---AYAGY-LWTTSVLGMLIQVLVL 403
Query: 376 TFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEEL 435
+G ++L ++++G+++S + L E +R + S M Q + +++ +L +
Sbjct: 404 YYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463
Query: 436 QEDATIVLPRGMTNVAIQIENAEFCWYPS-SSRPTLSGISMKVDRGMRVAVCGMVGSGKS 494
+ P + + I+ ++ F YP+ P L G++ + G VA+ G GSGKS
Sbjct: 464 IPLTGTLAPLNLEGL-IEFQDVSFS-YPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521
Query: 495 SLLSCILGEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENILFG-SP 540
++ + + G+V L G A V Q + SG++ ENI +G +
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 541 MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLL 600
+ A + + F +G T +G++G LSGGQKQR+ +ARAL + + +L
Sbjct: 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641
Query: 601 DDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYD 660
D+ SA+DA L + A++TV+ + H++ + AD ILVLK+G +++ G +
Sbjct: 642 DEATSALDAECEQLL---QESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 661 DLLQAGTDFNALV 673
L++ + LV
Sbjct: 699 QLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 22/224 (9%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE + V Y +L I+ F GG IVG +G+GKSTLI+ + RLI+P G I+
Sbjct: 4 IEFKE--VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD--PL---EEHSDREIWEALDKSQ 1211
ID +DI TI + DLR ++G++ Q P+LFEGT++ N++ P+ E++ D E + +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS----- 116
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
IV G +++ T + N S G+ Q VS+ R L +L+LDE T+++D + +
Sbjct: 117 ---IV-GLNKEYAT---RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 1272 IQKIIR--TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312
I+++I + TV I H + D L+ G + E+
Sbjct: 170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213
|
Length = 241 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-27
Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 37/212 (17%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA--------- 518
L G+S+ +++G VA+ G GSGKS+LL+ + G SGEVR+ GT
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELA 77
Query: 519 --------YVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
+V QS + EN+ P+ A K ++ LE
Sbjct: 78 AFRRRHIGFVFQSFNLLPDLTALENVEL--PLLLAGVPKKERRERAEELLERVG------ 129
Query: 570 IGDRGIN-----LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE---LFKEYIM 621
+GDR +N LSGGQ+QRV +ARAL D I L D+P +D+ TG E L +E +
Sbjct: 130 LGDR-LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRE--L 186
Query: 622 TALANKTVIFVTHQVEFLPAADFILVLKEGRI 653
A T++ VTH E AD I+ L++G+I
Sbjct: 187 NKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-27
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 3/232 (1%)
Query: 1086 RPPSSWPE-NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL 1144
P PE G + + ++ + L GI+ + G+ + I+G +GSGKSTL + +
Sbjct: 305 DPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI 364
Query: 1145 FRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSD-REI 1203
+ P G + +D D+ +G +PQD LF GT+ N+ E++D +I
Sbjct: 365 VGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
EA + + +++ +T + G S GQRQ ++L RAL +++VLDE ++
Sbjct: 425 IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSN 484
Query: 1264 VDTATDN-LIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1314
+D + L I + + TV I HR + D +LVL DGR+A F
Sbjct: 485 LDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-27
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 43/217 (19%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------- 517
L I++ V++G VA+ G G GKS+LL I G SGEV L G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 518 -AYVSQSA----WIQSGNIEENILFG-------SPMDKAKYKKVIHACSLKKDLELFSHG 565
YV Q W+ + +N+ G + + K+++ L + + H
Sbjct: 74 IGYVFQEDALLPWL---TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH- 129
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
LSGG +QRV +ARAL + LLD+PF A+DA T EL ++ ++
Sbjct: 130 ----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL-QDELLRLWE 178
Query: 626 --NKTVIFVTHQVE---FLPAADFILVLKE--GRIIQ 655
KTV+ VTH V+ +L AD ++VL GRI +
Sbjct: 179 ETRKTVLLVTHDVDEAVYL--ADRVVVLSNRPGRIGE 213
|
Length = 248 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 41/225 (18%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------- 517
+ L G+S +V+ G + G G+GK++LL + G + SGE+ + G
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKV 76
Query: 518 ----AYVSQSA----WIQSGNIEENI-----LFGSPMDKAKYKKVIHACSLKKDLELFSH 564
YV Q + + EN+ L+G + +++ LELF
Sbjct: 77 RRRIGYVPQEPSLYPEL---TVRENLEFFARLYGLS-KEEAEERIEEL------LELF-- 124
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--MT 622
G + + LSGG KQR+ +A AL D ++ +LD+P S +D + E + +
Sbjct: 125 GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELA 183
Query: 623 ALANKTVIFVTHQ---VEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
T++ TH E L D +++L +G+II G ++L +
Sbjct: 184 KEGGVTILLSTHILEEAEEL--CDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 27/207 (13%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAA---------- 518
+ IS+ + +G V + G G GK++LL I G E P SGE+ L G
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVPPEKRPI 79
Query: 519 -YVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIH--ACSLKKDLELFSHGDQTIIGDRG 574
V QS A +EEN+ FG + K K I + + L D+ +
Sbjct: 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-----KP 134
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIF 631
LSGGQ+QRV LARAL + + LLD+P SA+DA ++ KE + L + T ++
Sbjct: 135 HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE--LKELQRELGITFVY 192
Query: 632 VTH-QVEFLPAADFILVLKEGRIIQAG 657
VTH Q E L +D I V+ +GRI Q G
Sbjct: 193 VTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 16/250 (6%)
Query: 1071 YSQIPG--EAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIG 1128
YS+I PV++D P G +++ + Y + L + G+ +G
Sbjct: 287 YSRIRAMLAEAPVVKDGSEPVP-EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLG 345
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTI 1188
I G TGSGKSTL+ + R + + G I +I ++ + L RSRL ++ Q P LF T+
Sbjct: 346 ICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405
Query: 1189 RCNL---DPLEEHSDREIWEALDKSQLG----DIVRGKDQKLETPVLENGDNWSVGQRQL 1241
N+ P + + +EI ++L DI+R Q +T V E G S GQ+Q
Sbjct: 406 ANNIALGRP--DATQQEIEHV---ARLASVHDDILR-LPQGYDTEVGERGVMLSGGQKQR 459
Query: 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLV 1301
+S+ RALL A IL+LD+A ++VD T++ I +R + TV AHR+ + ++ +
Sbjct: 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEI 519
Query: 1302 LVLSDGRVAE 1311
LV+ G +A+
Sbjct: 520 LVMQHGHIAQ 529
|
Length = 569 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-26
Identities = 90/317 (28%), Positives = 152/317 (47%), Gaps = 40/317 (12%)
Query: 373 AAVTFGTSI-LLGAQLTAGS---VLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISG 428
A V + S + LTAG+ V S+M L PL++ ++ + + + +
Sbjct: 264 AFVLYAASFPSVMDTLTAGTITVVFSSMIA---LMRPLKSLTNVNAQFQRGMAACQTLFA 320
Query: 429 FLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGM 488
L E+ +++ V+ R I+ N F YP P L I+ K+ G VA+ G
Sbjct: 321 ILDLEQEKDEGKRVIER--AKGDIEFRNVTFT-YPGKEVPALRNINFKIPAGKTVALVGR 377
Query: 489 VGSGKSSLLSCILGEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENI 535
GSGKS++ + + GE+ L G A VSQ+ + + I NI
Sbjct: 378 SGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNI 437
Query: 536 LFGSPMDKAKYKK--VIHACSLKKDLELFS---HGDQTIIGDRGINLSGGQKQRVQLARA 590
+ +Y + + A + ++ + +G T+IG+ G+ LSGGQ+QR+ +ARA
Sbjct: 438 AYAR---TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA----NKTVIFVTHQVEFLPAADFIL 646
L +D+ I +LD+ SA+D T SE I AL N+T + + H++ + AD IL
Sbjct: 495 LLRDSPILILDEATSALD--TESE---RAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549
Query: 647 VLKEGRIIQAGKYDDLL 663
V+++G I++ G + +LL
Sbjct: 550 VVEDGEIVERGTHAELL 566
|
Length = 582 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 37/249 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ +L Y L ++ + G+ + ++G +G+GKSTL++ L L+EP G ++
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1157 IDNIDISTIG---LHDLRSRLGIIPQDPNLFE----------------GTIRCNLDPLEE 1197
ID DI+ + L LR ++G+I Q NL E T R +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
+ AL++ L D + +L S GQ+Q V++ RAL++Q ++++
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQL-----------SGGQQQRVAIARALMQQPKLILA 168
Query: 1258 DEATASVDTATDNLIQKIIR---TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
DE AS+D A+ + +++ E + ++ H++ + +D ++ L DGR+ FD
Sbjct: 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSL-HQVDLAREYADRIVGLKDGRIV-FD 226
Query: 1314 TPGRLLEDK 1322
P L D+
Sbjct: 227 GPPAELTDE 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 38/213 (17%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI-SGEVRLCGTA--------- 517
L ++++++ G VA+ G GSGKS+LL+ +LG + K SGEV + G
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKEL 77
Query: 518 --------AYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
+V Q+ + + EN+ + EL
Sbjct: 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELP-----LLIAGKSAGRRKRAAEELLEVLG-- 130
Query: 569 IIGDRGIN-----LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
+ DR + LSGGQ+QRV +ARAL + I L D+P +D+ T E+ + ++
Sbjct: 131 -LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LLRE 187
Query: 624 LA---NKTVIFVTHQVEFLPAADFILVLKEGRI 653
L KT+I VTH E AD ++ LK+G+I
Sbjct: 188 LNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-25
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 24/230 (10%)
Query: 1097 IELIDLKVRY---GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
IEL ++ + G L ++ P G+ GI+G +G+GKSTL++ + L P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1154 RIIIDNIDISTI---GLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLE--EHSDREIWEA 1206
+ +D D++ + L LR ++G+I Q NL T+ N+ PLE EI +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+ ++L ++V D+ P S GQ+Q V++ RAL +IL+ DEAT+++D
Sbjct: 122 V--AELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1267 ATD----NLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
T L++ I R T+ I H + V D V VL GR+ E
Sbjct: 175 ETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 74/223 (33%), Positives = 105/223 (47%), Gaps = 48/223 (21%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AA 518
L +S++V+RG + G GSGKS LL I G I SG++ L G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 519 YVSQS-AWIQSGNIEENILFGSPMDKAKYKKV-IHACSLKKDLELFSHGDQTIIGDRGIN 576
YV Q+ A + +NI +G + K K K I +K LE I GI+
Sbjct: 75 YVPQNYALFPHMTVYKNIAYG--LKKRKVDKKEIE----RKVLE--------IAEMLGID 120
Query: 577 ---------LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-- 625
LSGG++QRV +ARAL + I LLD+PFSA+D T KE + L
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKKI 175
Query: 626 ----NKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLL 663
TV+ VTH E AD + ++ G++IQ GK +++
Sbjct: 176 RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 40/241 (16%)
Query: 1097 IELIDLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
+E+ +L V + V L ++ + G+ +G+VG +GSGKSTL +A+ L++P G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1155 IIIDNIDISTIGLHDL---RSRLGIIPQDPNLFEGTIRCNLDPL---EEHSDREIWEAL- 1207
II D D+ + R + ++ QDP +L+P E I E L
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPRMTIGEQ----IAEPLR 110
Query: 1208 ---DKSQLGDIVRGKDQKLETPVLENGDNW--------SVGQRQLVSLGRALLKQARILV 1256
S+ L + + S GQRQ V++ RAL ++L+
Sbjct: 111 IHGKLSKKEARKEAVLLLLV--GVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLI 168
Query: 1257 LDEATASVDTATD----NLIQKIIRTEFKDCTVCTIAHRIPTV-IDSDLVLVLSDGRVAE 1311
DE T+++D + +L++K ++ E T+ I H + V +D V V+ G++ E
Sbjct: 169 ADEPTSALDVSVQAQILDLLKK-LQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226
Query: 1312 F 1312
Sbjct: 227 E 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 64/187 (34%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L+ +S+ ++ G VA+ G GSGKS+LL CI G SG + + G +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED--------LTDL 67
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589
E P + + V +D LF H T++ + + LSGGQ+QRV LAR
Sbjct: 68 EDE------LPPLRRRIGMVF------QDFALFPH--LTVLENIALGLSGGQQQRVALAR 113
Query: 590 ALYQDADIYLLDDPFSAVDAHTGSE---LFKEYIMTALANKTVIFVTHQVEFLPA-ADFI 645
AL D D+ LLD+P SA+D T E L K + A TV+ VTH ++ AD +
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKS--LQAQLGITVVLVTHDLDEAARLADRV 171
Query: 646 LVLKEGR 652
+VL++G+
Sbjct: 172 VVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 34/223 (15%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
E+ DL V YG + VL ++ G+ + IVG G+GKSTL++A+ L++P G I +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNL---FEGTIR----------CNLDPLEEHSDRE-I 1203
+ R R+G +PQ ++ F ++R L +D+ +
Sbjct: 59 FGKPLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
EAL++ L ++ D+++ S GQ+Q V L RAL++ +L+LDE A
Sbjct: 114 DEALERVGLSEL---ADRQI--------GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 1264 VDTATDNLIQKIIRT-EFKDCTVCTIAHRIPTVIDS-DLVLVL 1304
VD T I +++R + T+ + H + V++ D VL+L
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 41/237 (17%)
Query: 456 NAEFCWYPSSSR-PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLC 514
AE + R L +S+++++G RV + G GSGKS+LL + G + SGEV +
Sbjct: 5 EAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD 64
Query: 515 GTAAYVSQSAW---------IQSGN-------IEENILFG---SPMDKAKYKK----VIH 551
G +S Q+ + +E+ + FG + + + ++ +
Sbjct: 65 GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALE 124
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
L++ L+ NLSGGQKQRV +A L +I LLD+P + +D
Sbjct: 125 LVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173
Query: 612 GSELFKEYIMTALA---NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
EL + ++ L KT+I VTH +E + AD ++VL +G+I+ G ++
Sbjct: 174 RRELLE--LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 8e-25
Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
++++N + S L +++ ++ G V + G G GKS+LL I G SGE
Sbjct: 3 ELELKNVRKSF---GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 511 VRLCGTA-----------AYVSQS-AWIQSGNIEENILFGSPMDK-------AKYKKVIH 551
+ + G A V Q+ A + ENI FG + + K+V
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 552 ACSLKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
L+ L +R LSGGQ+QRV LARAL + ++LLD+P S +DA
Sbjct: 120 LLGLEHLL------------NRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 611 TGSELFKE-YIMTALANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ E + T I+VTH QVE + AD I+V+ +GRI Q G +L
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222
|
Length = 338 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-25
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 46/214 (21%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI 1160
+L V YG VL ++ + G+ +GI+G G+GKSTL++ L L++P+ G I++D
Sbjct: 4 NLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 1161 DISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKD 1220
D++++ +L ++ +PQ L L L +DR E L
Sbjct: 62 DLASLSPKELARKIAYVPQ--AL----ELLGLAHL---ADRPFNE-L------------- 98
Query: 1221 QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD----TATDNLIQKII 1276
S G+RQ V L RAL ++ IL+LDE T+ +D L++++
Sbjct: 99 --------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
Query: 1277 RTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
R + TV + H + +D V++L DGR+
Sbjct: 145 RE--RGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 37/259 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ +L V YG VL I+ + G+ ++G G+GKSTL++A+ L++P+ G I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQ----DPN----------LFEGTIRCNLDPLEEHSDRE 1202
I + R R+G +PQ D + L + L + +
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ EAL++ + D+ +D+++ S GQ+Q V L RAL + +L+LDE
Sbjct: 120 VDEALERVGMEDL---RDRQI--------GELSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 1263 SVDTATDNLIQKIIRTEFKD-CTVCTIAHRIPTVID-SDLVLVL-----SDGRVAEFDTP 1315
VD A I +++ ++ TV + H + V+ D V+ L + G E T
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228
Query: 1316 GRLLEDKSSMFLKLVTEYS 1334
L + + Y
Sbjct: 229 ENLEKAFGGSLAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 46/248 (18%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
I++ + R L G+ + V RG +A+ G GSGKS+LL ILG +
Sbjct: 4 SPEPLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 507 ISGEVRLCGTA-AYVSQSAWI----------QSG------NIEENILFGSPM--DKAKYK 547
GE+ + G +S+ Q G + EN+ F P+ +
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPE 118
Query: 548 KVIHACSLKKDLELFSHGDQTIIGDRGIN-------LSGGQKQRVQLARALYQDADIYLL 600
+I L K LEL +G RG LSGG ++RV LARA+ D ++ L
Sbjct: 119 SLIRELVLMK-LEL--------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL 169
Query: 601 DDPFSAVDAHTGSELFKEYIMT---ALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQA 656
D+P S +D + + + E I AL TVI VTH + L AD + VL +G++I
Sbjct: 170 DEPTSGLDPIS-AGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 657 GKYDDLLQ 664
G ++LL
Sbjct: 228 GTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 46/216 (21%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ +L RYG+ L I+ G+ G++G G+GK+TLI+ + L++P G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDI 1215
+ DI +++ R+G +P++P+L+E T+R NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1216 VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275
S G +Q ++L +ALL +L+LDE T+ +D + ++
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1276 IRTEFKD-CTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
+R K+ T+ +H + D V +L++GR+
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-24
Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 1/232 (0%)
Query: 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILN 877
L ++ +A+ + L G ++LF +LR + PMSFFD+ G + +
Sbjct: 43 LAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTS 102
Query: 878 RVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYM 937
R++ D S + + +LG F + +VG VM W++ L+++ + + +
Sbjct: 103 RLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLA 162
Query: 938 ASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLA 997
R+L R + + ES++G T++ FG+E+ ++R L+ +
Sbjct: 163 KKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAI 222
Query: 998 AIEWLCLRMELLSTFVFAFCMVLLVSFPH-GAIDPSMAGLAVTYGLNLNARL 1048
+L+S +A + G + ++ GL L+ L
Sbjct: 223 TAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-24
Identities = 74/247 (29%), Positives = 108/247 (43%), Gaps = 51/247 (20%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I++EN YP+ + L +S+ ++ G VA+ G G+GKS+LL C+ G + SG V
Sbjct: 1 IEVENLS-KTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 512 RLCGTA----------AYVSQSAWI-QSGN-IE-----ENILFG---------------S 539
+ GT Q I Q N IE EN+L G
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 540 PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYL 599
+K + A + + + L Q R LSGGQ+QRV +ARAL Q + L
Sbjct: 119 KEEKQR------ALAALERVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLIL 167
Query: 600 LDDPFSAVD---AHTGSELFKEYIMTALANKTVIFVTHQVEF-LPAADFILVLKEGRIIQ 655
D+P +++D + +L K TVI HQV+ AD I+ LK+GRI+
Sbjct: 168 ADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
Query: 656 AGKYDDL 662
G +L
Sbjct: 226 DGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-23
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 21/248 (8%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
A++ ++ F Y +S R + +S + G VA+ G G+GKS+L++ + SG
Sbjct: 334 AVEFDDVSFS-YDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 511 VRLCGT-------------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557
+ + GT A V Q A + + +IE+NI G P A +++ A +
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DATDEEMRAAAERAQ 449
Query: 558 DLELF---SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ G T++G+RG LSGG++QR+ +ARAL +D I +LD+ SA+D T ++
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
+ K + + +T + H++ + AD ILV GR++++G +D+L+ G F AL+
Sbjct: 510 V-KAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLR 568
Query: 675 AHHEAIEA 682
A E
Sbjct: 569 AQGMLQED 576
|
Length = 588 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 32/236 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ +L YG +L ++ + P G+ GI+G GSGKSTL++ L L++P G ++
Sbjct: 3 LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG---------TIRCNLDPLEEHSDREIWEAL 1207
+D DI+++ +L +L +PQ P+ G +L S +
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+ +L + D+ ++ L S G+RQ V + RAL ++ IL+LDE T+ +D A
Sbjct: 121 EALELLGLEHLADRPVDE--L------SGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 1268 TDNLIQKIIR--TEFKDCTVCTIAH------RIPTVIDSDLVLVLSDGRVAEFDTP 1315
+ +++R K TV + H R +D +++L DG++ TP
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARY-----ADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 2e-23
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 23/220 (10%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
++ +N F + L +S + G A+ G GSGKS++++ + G+V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFG---SPMDKAKYKKV-IHACS 554
L G + V Q + + ++++NI +G + K HA S
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHS 131
Query: 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ + G T +G++G LSGGQKQRV +ARAL ++ + +LD+ SA+DA SE
Sbjct: 132 F---ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE--SE 186
Query: 615 LFKEY-IMTALANKTVIFVTHQVEFLPAADFILVLKEGRI 653
+ + +TV+ + H++ + AD ILVL GRI
Sbjct: 187 QQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 74/243 (30%), Positives = 110/243 (45%), Gaps = 38/243 (15%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+ EN + ++ + +++ ++ G + + G GSGK++ L I I SGE+
Sbjct: 2 IEFENVSKRY---GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 512 RLCGTA-------------AYVSQSAWIQSG-----NIEENILFGSPM---DKAKYKKVI 550
+ G YV Q Q G + ENI + DK + KK
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114
Query: 551 HACSLKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
L D + DR + LSGGQ+QRV +ARAL D I L+D+PF A+D
Sbjct: 115 DELLDLVGL------DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 610 HTGSELFKEYI-MTALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQA-G 666
T +L +E + KT++FVTH + E L AD I V+ G I+Q D++L
Sbjct: 169 ITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228
Query: 667 TDF 669
DF
Sbjct: 229 NDF 231
|
Length = 309 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 81/282 (28%), Positives = 121/282 (42%), Gaps = 42/282 (14%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I+I N + + + L IS+ + G VA+ G G+GKS+LL I G E P +G
Sbjct: 3 IRINNVKKRF---GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGR 58
Query: 511 VRLCGTAAYVSQSAWIQSGNI---------------EENILFGSPMDKAKYKKVIHACSL 555
+RL G + + ++ + +NI FG + K + + +
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 556 KKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
++ L L + DR LSGGQ+QRV LARAL + + LLD+PF A+DA E
Sbjct: 119 EELLRLVQLEG---LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175
Query: 615 LFKEYIMTALANK---TVIFVTH-QVEFLPAADFILVLKEGRIIQAG-KYDDLLQAGTDF 669
L + + L ++ T +FVTH Q E L AD ++VL +GRI Q G + + F
Sbjct: 176 LRRW--LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
Query: 670 -----------NALVSAHHEAIEAMDIPNHSSEDSDENLTLD 700
V + A DI D L
Sbjct: 234 VARFLGEVNVLPGEVILGQLQVGAHDIGLPLQPLPDGKADLY 275
|
Length = 345 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 4e-23
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 48/231 (20%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------- 516
R L G+ + V RG +A+ G GSGKS+LL I+G + SGEV + G
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71
Query: 517 -------AAYVSQS-AWIQSGNIEENILFGSPM------------DKAKYKKVIHACSLK 556
+ QS A S + EN+ F P+ + K + A L+
Sbjct: 72 LYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEK--LEAVGLR 127
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
+L+ LSGG K+RV LARAL D ++ L D+P + +D S +
Sbjct: 128 GAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA-SGVI 175
Query: 617 KEYIMT--ALANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQ 664
+ I + T I VTH ++ AD I VL +G+I+ G ++L
Sbjct: 176 DDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 4e-23
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 30/233 (12%)
Query: 1097 IELIDLKVRY--GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IEL ++ Y G L + G+ + IVG +GSGKSTL+ L L +P G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 1155 IIIDNIDISTIGLHDL----RSRLGIIPQDPNLFEG-TIRCNLD-PLE------EHSDRE 1202
++I+ D++ + +L R ++G + Q+ NL T+ N++ PL R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 1203 IWEALDKSQLGDIVRGKD-QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
E L+ L D + K +L S GQ+Q V++ RAL+ +I++ DE T
Sbjct: 122 AEELLEVLGLEDRLLKKKPSEL-----------SGGQQQRVAIARALINNPKIILADEPT 170
Query: 1262 ASVDTATDNLIQKIIRTEFKD--CTVCTIAHRIPTVIDS-DLVLVLSDGRVAE 1311
++D+ T + +++R K+ T+ + H P + D V+ L DG++ E
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 4e-23
Identities = 70/215 (32%), Positives = 100/215 (46%), Gaps = 46/215 (21%)
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---TAAYVSQ---SAWIQSGN 530
V G VA+ G G+GKS+LL+ I G SGE+ + G TA+ ++ S Q N
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN 81
Query: 531 ------IEENILFG-SP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI----N 576
+ +NI G SP ++ + +KV A + Q +
Sbjct: 82 LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAA------------QVGLAGFLKRLPGE 129
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-------TV 629
LSGGQ+QRV LAR L ++ I LLD+PFSA+D +E M AL ++ T+
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE------MLALVSQLCDERKMTL 183
Query: 630 IFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663
+ VTH E AD ++ L GRI G +LL
Sbjct: 184 LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-23
Identities = 118/479 (24%), Positives = 201/479 (41%), Gaps = 38/479 (7%)
Query: 215 VYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWY-LHDIWMLPLQIILALAILYKN 273
+ LS +G + + + + + L +I ++I L IL++
Sbjct: 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80
Query: 274 VGIA-SVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAW 332
G ++ TL+ I+ ++ TV V+ + +++ + A + K + L N +K
Sbjct: 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGN 140
Query: 333 ED----RYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIF----VAAVTFGTSILLG 384
E+ RY LE K S + F + IF +T +
Sbjct: 141 EEYEAVRYDHALETYEKAA----IKVHVSLLVLNFG--QTAIFSTGLRVMMTMSALGVEE 194
Query: 385 AQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLP 444
QLT G +++ A L PL + Q ++++ L E DA P
Sbjct: 195 GQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254
Query: 445 -RGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGE 503
+ A+ N F + P RP L+GIS + G VA+ G G+GKS++L +
Sbjct: 255 LWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF 312
Query: 504 IPKISGEVRLCGT--AAYVSQSAWIQSG-----------NIEENILFGSPMDKAKYKKVI 550
SG + + G QS G I NI +G P A ++V
Sbjct: 313 YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVG 370
Query: 551 HACSLKKDLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
A + + G T +G+RG+ LSGG+KQRV +AR + ++ I +LD+ SA+
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 608 DAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
D HT + + + A +T + + H++ + AD I+VL GRI++ G +++LL AG
Sbjct: 431 DTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------- 515
+ ++ +++++ +G + + G GSGK++ + I I SGE+ + G
Sbjct: 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71
Query: 516 ----TAAYVSQSAWIQSG-----NIEENI-----LFGSPMDKAKYKKVIHACSLKKDLEL 561
YV Q Q G +EENI L P K K ++ + L L
Sbjct: 72 ELRRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWP--KEKIRERA-----DELLAL 120
Query: 562 FSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI- 620
LSGGQ+QRV +ARAL D + L+D+PF A+D T +L +E+
Sbjct: 121 VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180
Query: 621 MTALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLL 663
+ KT++FVTH + E AD I ++K G I+Q G D++L
Sbjct: 181 LQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 46/218 (21%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+EL ++ RYG+ VL+ ++ G+ + ++G +GSGKSTL++ + L EP G I+
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1157 IDNIDISTIGLH--DLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLG 1213
ID D++ + LR R+G++ QD LF T+ N I L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN-----------IALGL------ 101
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
S GQ+Q V+L RAL +L+LDE T+++D T ++
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1274 KIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGR 1308
++++ TV + H + +D V+VL DG+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 78/213 (36%), Positives = 107/213 (50%), Gaps = 30/213 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA----------- 518
L ++++V G VA+ G GSGKS+LL I G SG +RL G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 519 YVSQS-AWIQSGNIEENILFGSPM---DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
+V Q A + + +NI FG + KAK K + EL +GDR
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVE--------ELLELVQLEGLGDRY 127
Query: 575 IN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVI 630
N LSGGQ+QRV LARAL + + LLD+PF A+DA EL + L ++ T +
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL--RSWLRKLHDEVHVTTV 185
Query: 631 FVTH-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
FVTH Q E + AD I+V+ G+I Q G D++
Sbjct: 186 FVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 28/240 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I++ ++ Y + L ++ G+ + I+G GSGKST+ + L L++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDP-NLFEGTI-----------RCNLDPLEEHSDREIW 1204
ID I IS L ++R ++GII Q+P N F G + + P + I
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK-VPP--KKMKDIID 124
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
+ K + D + + Q L S GQ+Q V++ L I++ DE+T+ +
Sbjct: 125 DLAKKVGMEDYLDKEPQNL-----------SGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 1265 DTATDNLIQKIIRT--EFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
D I+KI+ + + T+ +I H + I +D V+V S+G++ P +L +K
Sbjct: 174 DPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-22
Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 46/340 (13%)
Query: 369 PIFVAAVTFGTSILLGA------QLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVS 422
P + ++ +++G QLT G +++ + EP+ N + + +
Sbjct: 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD 442
Query: 423 LDRISGFLQ------EEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMK 476
L+R+ L+ EE + A P + +++ N F Y P + S+
Sbjct: 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFG-YSPLEPPLIENFSLT 501
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAAYVSQS 523
+ G RVA+ G GSGKS++ + G SGE+ G + A V Q
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561
Query: 524 AWIQSGNIEENI-LFGSPMDKAKYKKVIHACSLKKDLELF------SHGDQTIIGDRGIN 576
++ G + +N+ L+ + A ++ AC KD + G + + G N
Sbjct: 562 IFLFEGTVRDNLTLWDPTIPDAD---LVRAC---KDAAIHDVITSRPGGYDAELAEGGAN 615
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--TVIFVTH 634
LSGGQ+QR+++ARAL ++ I +LD+ SA+D T E I L + T I V H
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPET--EKI---IDDNLRRRGCTCIIVAH 670
Query: 635 QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
++ + D I+VL+ G+++Q G +++L G + L+
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-22
Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 33/284 (11%)
Query: 402 LQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQ--EDATIVLPRGMTNVAIQIENAEF 459
L EPL SM+ Q V+ +R+ + Q D R + + I I+N F
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDD-----RPLQSGRIDIDNVSF 348
Query: 460 CWYPSSSRPTLSGISMKV-DRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--- 515
+ L I++ V RG VA+ G GSGKS+L S ++G P GE+RL G
Sbjct: 349 AY--RDDNLVLQNINLSVPSRGF-VALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405
Query: 516 ----------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHG 565
A V Q + + N+ G + + + + + L + G
Sbjct: 406 SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDG 465
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
T +G++G NLS GQKQ + LAR L Q I +LD+ + +D+ T ++ I ALA
Sbjct: 466 LYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT-----EQAIQQALA 520
Query: 626 ----NKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
+ T++ + H++ + AD ILVL G+ ++ G + LL A
Sbjct: 521 AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564
|
Length = 592 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 3e-22
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L IS+ V++G + G G+GK++L+ ILG + SGE+++ G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589
++ I G ++ SL ++L + + + LSGG KQR+ LA+
Sbjct: 70 EVKRRI--GYLPEEP---------SLYENLTVREN----------LKLSGGMKQRLALAQ 108
Query: 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT-ALANKTVIFVTHQVEFLPA-ADFILV 647
AL D ++ +LD+P S +D + F E + KT++ +H +E D + +
Sbjct: 109 ALLHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167
Query: 648 LKEGRI 653
L GRI
Sbjct: 168 LNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 7e-22
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 53/252 (21%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
I+++N YP L +++++++G VA+ G G+GKS+LL + G + SGE
Sbjct: 3 MIEVKNLSKT-YPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 511 VRLCGTA----------------AYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHAC 553
+ G + Q + ++ EN+L G + ++ +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSL---- 116
Query: 554 SLKKDLELFSHGDQTIIGD-------------RGINLSGGQKQRVQLARALYQDADIYLL 600
LFS D+ D R LSGGQ+QRV +ARAL Q I L
Sbjct: 117 -----FGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 601 DDPFSAVDAHTGSELFKEYIMTALA------NKTVIFVTHQVEF-LPAADFILVLKEGRI 653
D+P +++D + +M L TVI HQV+ AD I+ LK GRI
Sbjct: 172 DEPVASLD-----PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226
Query: 654 IQAGKYDDLLQA 665
+ G +L
Sbjct: 227 VFDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-21
Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 28/247 (11%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
+N I ++ +Y + L ++ P G+ IVG GSGKST+ + + + +
Sbjct: 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS 63
Query: 1153 GRIIIDNIDISTIGLHDLRSRLGIIPQDP-NLFEGTIRCNLD---PLEEHS------DRE 1202
G I +N I+ LR +GI+ Q+P N F G+I D LE H+ R
Sbjct: 64 GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI-VKYDVAFGLENHAVPYDEMHRR 122
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ EAL + + + + L S GQ+Q V++ L +++LDEAT+
Sbjct: 123 VSEALKQVDMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATS 171
Query: 1263 SVDTATD----NLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318
+D +L++K+ + T+ +I H + +++D V+V++ G V + TP +
Sbjct: 172 MLDPDARQNLLDLVRKV--KSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
Query: 1319 LEDKSSM 1325
+ +
Sbjct: 230 FDHAEEL 236
|
Length = 269 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 77/320 (24%), Positives = 153/320 (47%), Gaps = 21/320 (6%)
Query: 372 VAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQ 431
+ + GT +++ +L+ G V++ + +L L ++ + + + L+ F
Sbjct: 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDF--FDL 312
Query: 432 EEELQEDATIVLPRGMTNV--AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMV 489
E+ + + + NV A++ + F + +SS+ + +S + G VA+ G
Sbjct: 313 EDSVFQREEPADAPELPNVKGAVEFRHITF-EFANSSQ-GVFDVSFEAKAGQTVAIVGPT 370
Query: 490 GSGKSSLLSCILGEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENIL 536
G+GK++L++ + G++ + G A V Q A + + +I ENI
Sbjct: 371 GAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR 430
Query: 537 FG-SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595
G + + A + + S+G T++G+RG LSGG++QR+ +ARA+ ++A
Sbjct: 431 LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490
Query: 596 DIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQ 655
I +LD+ SA+D T + + K I N+T + H++ + AD +L L +GR+I+
Sbjct: 491 PILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549
Query: 656 AGKYDDLLQAGTDFNALVSA 675
G + +L+Q F L+
Sbjct: 550 KGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 2e-21
Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 38/234 (16%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+EL L YG L ++ G+ + ++G +G GK+TL++ + L P G I+
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLF-----EGTI----RCNLDPLEEHSDREIWEAL 1207
ID D++ + R +G++ QD LF I + P E R
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL- 115
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+L + + L E S GQ+Q V+L RAL ++ +L+LDE +++D
Sbjct: 116 ---ELVGL----EGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1268 TDNLIQKIIRTEFKDCTVCTI--------AHRIPTVIDSDLVLVLSDGRVAEFD 1313
+++ ++ ++ + TI A + +D + V+++GR+ +
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALAL-----ADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-21
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 14/129 (10%)
Query: 1138 STLIQALFRLIEPACGRIIIDNIDISTIG-LHDLRSRLGIIPQDPNLF-EGTIRCNLDP- 1194
STL++ + L++P G I++D D + + LR R+G++ QDP LF E T+R NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1195 -LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253
++ +D EAL++ L D + E S GQ+Q V++ RALLK+ +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLD----------REPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1254 ILVLDEATA 1262
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-21
Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 29/240 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ + +G+ + +L G+ P G+ + I+G +GSGKSTL++ + L+ P G I+
Sbjct: 9 IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1157 IDNIDI---STIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLEEHSDREIWEALDKSQ 1211
ID DI S L+++R R+G++ Q LF T+ N+ PL EH+ L +S
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK------LPESL 120
Query: 1212 LGDIVRGKDQKLE----TPVLEN--GDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+ ++V KLE + S G R+ V+L RA+ +L LDE T+ +D
Sbjct: 121 IRELVL---MKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177
Query: 1266 ----TATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320
D LI+++ TV + H + +++ +D V VL+DG+V TP LL
Sbjct: 178 PISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 21/228 (9%)
Query: 1097 IELIDLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IEL ++ +G+ V L ++ + P G+ GI+GR+G+GKSTLI+ + L P G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1155 IIIDNIDISTI---GLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLEEH--SDREIWEAL 1207
+++D D++ + L R R+G+I Q NL T+ N+ PLE EI E +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+L ++V +D+ P S GQ+Q V + RAL ++L+ DEAT+++D
Sbjct: 122 L--ELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 1268 TDNLIQKIIRT---EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
T I ++R E T+ I H + V D V V+ G V E
Sbjct: 175 TTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 1097 IELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IEL +L YG L G++ + G+ + IVG +GSGKSTL+ L L P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1155 IIIDNIDISTIGLHDL----RSRLGIIPQDPNLFEG-TIRCNL--------DPLEEHSDR 1201
+ +D DIS + +L R +G + Q NL T N+ P +E +R
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
E L++ LGD + +L S GQ+Q V++ RAL +I++ DE T
Sbjct: 121 AE-ELLERVGLGDRLNHYPSEL-----------SGGQQQRVAIARALANDPKIILADEPT 168
Query: 1262 ASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
++D+ T + +++R + T+ + H +D ++ L DG++
Sbjct: 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 5e-21
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 34/219 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515
++ S+ V+ G + G+ GSGKS+L+ + I GE+ + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 516 ---TAAYVSQS-AWIQSGNIEENILFG---SPMDKA-KYKKVIHACSLKKDLELFSHGDQ 567
+ V QS A + + EN+ FG + KA + ++ + A L LE ++
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-GLEGYAD--- 159
Query: 568 TIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALA 625
+ N LSGG +QRV LARAL D DI L+D+ FSA+D +E+ E + + A
Sbjct: 160 -----KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 626 NKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLL 663
KT++F+TH + E L D I ++K+G I+Q G +++L
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-21
Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----------- 515
+ L +S +V+ G A+ G G+GK++LLS + GE P SG+V L G
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103
Query: 516 ---TAAYVS-------QSAW-----IQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLE 560
VS + + SG ++ + LE
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL------LE 157
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK--E 618
L G + + +LS G+++RV +ARAL +D ++ +LD+P +D +L E
Sbjct: 158 LL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE 215
Query: 619 YIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGK 658
+ + ++FVTH E +P L+LKEG ++ GK
Sbjct: 216 ELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 34/217 (15%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--------------- 517
+S+ V G + G+ GSGKS+LL CI I SG+V + G
Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102
Query: 518 --AYVSQS-AWIQSGNIEENILFG---SPMDKA-KYKKVIHACSLKKDLELFSHGDQTII 570
+ V QS A + + EN+ FG + +A + ++ A LEL
Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA------LELVGLEGW--- 153
Query: 571 GDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKT 628
+ + LSGG +QRV LARAL D DI L+D+ FSA+D E+ E + + A KT
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 629 VIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQ 664
++F+TH + E L D I ++K+GR++Q G +++L
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 7e-21
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 1097 IELIDLKVRYGEN---LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
I + D + L I P G+ + IVG GSGKS+L+ AL +E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLG 1213
+ + + + Q+P + GTIR N+ + + + + L
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 1214 ---DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT-D 1269
+I+ D T + E G N S GQ+Q +SL RA+ A I +LD+ ++VD
Sbjct: 108 PDLEILPDGDL---TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1270 NLIQKIIRTEFKDC-TVCTIAHRIPTVIDSDLVLVLSDGR 1308
++ + I + T + H++ + +D ++VL +GR
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 7e-21
Identities = 67/213 (31%), Positives = 98/213 (46%), Gaps = 33/213 (15%)
Query: 470 LSGISMKVD---RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--------- 517
L ++K+D + G G+GKS+LL CI G G + L GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 518 --------AYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
V Q A N+ EN+ FG + + ++ S+ + L+L G
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI----SVDELLDLL--GLDH 123
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--- 625
++ LSGG+KQRV LARAL ++ LLD+PFSA+D +L E + +
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE--LKQIKKNL 181
Query: 626 NKTVIFVTHQ-VEFLPAADFILVLKEGRIIQAG 657
N VIFVTH E AD I+V+++GR+ G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 7e-21
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 57/252 (22%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ +L YG++ +L G++ P G+ + ++GR G+GK+TL++ + L+ P G I
Sbjct: 1 LEVENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1157 IDNIDISTIGLHDLRSRLGI--IPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLG 1213
D DI+ + H+ R+R GI +P+ +F T+ NL LG
Sbjct: 59 FDGRDITGLPPHE-RARAGIGYVPEGRRIFPELTVEENL------------------LLG 99
Query: 1214 DIVRGKDQKLET--------PVLEN-----GDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
R + ++ P L+ S G++Q++++ RAL+ + ++L+LDE
Sbjct: 100 AYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
Query: 1261 TAS-----VDTATDNLIQKIIRTEFKDCTVCTI------AHRIPTVIDSDLVLVLSDGRV 1309
+ V+ + I+++ TI A + +D VL GRV
Sbjct: 160 SEGLAPKIVEEIFE-AIRELRDEGV------TILLVEQNARFALEI--ADRAYVLERGRV 210
Query: 1310 AEFDTPGRLLED 1321
T LL D
Sbjct: 211 VLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 1e-20
Identities = 57/158 (36%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 1153 GRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDRE-IWEALDKSQ 1211
G+I++D +DI L DLR+ I+ Q+P LF +I N+ +E + RE + A +
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
+ + + K +T V G + S GQ+Q +++ RALL++ +IL+LDEAT+S+D+ ++ L
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 1272 IQKIIRTEFKDC---TVCTIAHRIPTVIDSDLVLVLSD 1306
I+K I + KD T+ TIAHRI ++ SD ++V ++
Sbjct: 1397 IEKTI-VDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-20
Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--PAC-- 1152
IE+ DL + YG+ L I P K ++G +G GKSTL++ L R+ + P
Sbjct: 8 IEVRDLNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1153 -GRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCN------LDPLEEHSDREI 1203
G +++D +I + + +LR R+G++ Q PN F +I N L +++ EI
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEI 125
Query: 1204 WE-ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
E +L K+ L D V KD +L ++ S GQ+Q + + RAL + +L++DE T+
Sbjct: 126 VESSLKKAALWDEV--KD-RLH----KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 1263 SVDTATDNLIQKIIRTEFKDCTVCTIAH------RIPTVIDSDLVLVLSDGRVAEFD 1313
++D + I+++I K T+ + H R+ SD G + EF
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEFG 230
|
Length = 253 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ +L Y L + G+ + I+G +G+GKSTL+++L L++P G I+
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1157 IDNIDISTI---GLHDLRSRLGIIPQDPNLFE----------------GTIRCNLDPLEE 1197
+ + I+ + L LR +G+I Q NL T R +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
+ +AL++ + D K S GQ+Q V++ RAL++Q +I++
Sbjct: 123 EDKAQALDALERVGILD-------KAYQRA----STLSGGQQQRVAIARALVQQPKIILA 171
Query: 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIA--HRIPTVID-SDLVLVLSDGRVAEFDT 1314
DE AS+D + + I++ ++ + I H++ +D ++ L GR+ FD
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDG 230
Query: 1315 PGRLLEDK 1322
P L D+
Sbjct: 231 PASELTDE 238
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-20
Identities = 75/306 (24%), Positives = 134/306 (43%), Gaps = 62/306 (20%)
Query: 1080 PVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLH-GITCAFPGGKKIGIVGRTGSGKS 1138
P++E++ + I+ +++ Y + ++ + GK VG +G GKS
Sbjct: 366 PLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKS 425
Query: 1139 TLIQALFRLIEPACGRIII-DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCN------ 1191
T+++ + RL +P G III D+ ++ I L RS++G++ QDP LF +I+ N
Sbjct: 426 TILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLY 485
Query: 1192 ----LDPLEEHSD---------------------------------------REIWEALD 1208
L+ L + + R+ ++ +
Sbjct: 486 SLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIK 545
Query: 1209 KSQ---------LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
S+ + D V K ET V N S GQ+Q +S+ RA+++ +IL+LDE
Sbjct: 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605
Query: 1260 ATASVDTATDNLIQKIIRTEFKDCTVCT--IAHRIPTVIDSDLVLVLSDGRVAEFDTPGR 1317
AT+S+D ++ L+QK I + T IAHR+ T+ ++ + VLS+
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDI 665
Query: 1318 LLEDKS 1323
+ ED +
Sbjct: 666 IGEDPT 671
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 48/253 (18%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+EL +++ +G VL + G+ + ++G +G GKSTL++ + L EP G I
Sbjct: 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNLFE-GTIRCNL--------DPLEEHSDREIWEA 1206
+ID D++ L + + ++ Q+ L+ T+ N+ P E D+ + E
Sbjct: 61 LIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI-DKRVKEV 117
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
L ++ K +L S GQRQ V+L RAL+++ ++ +LDE +++D
Sbjct: 118 AKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1267 ATDNLIQKIIRTEFKDCTVCTIAHR---IPTVI---D-------SDLVLVLSDGRVAEFD 1313
L +R+E K H T+ D +D ++V++DGR+ +
Sbjct: 167 KLRVL----MRSEIK------KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVG 216
Query: 1314 TPGRLLEDKSSMF 1326
TP L E +++F
Sbjct: 217 TPLELYERPANLF 229
|
Length = 338 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 49/245 (20%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
+V I++EN F YP+S L +S +++ G VA+ G GSGKS++ + G + S
Sbjct: 5 SVMIKVENVSFS-YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS 63
Query: 509 GEVRLCGTAAYVSQSAWIQSGNIEE-----NILFGSP---------------------MD 542
GE+++ G I N++E I+F +P +
Sbjct: 64 GEIKIDGIT--------ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP 115
Query: 543 KAKYKKVIHACSLKKDLE-LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLD 601
K K +I + K +E Q NLSGGQKQRV +A L + +I + D
Sbjct: 116 PKKMKDIIDDLAKKVGMEDYLDKEPQ--------NLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 602 DPFSAVDAHTGSELFKEYIMTAL---ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658
+ S +D E+ K IM L KT+I +TH ++ AD ++V EG++I GK
Sbjct: 168 ESTSMLDPKGKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
Query: 659 YDDLL 663
++L
Sbjct: 226 PKEIL 230
|
Length = 271 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 36/215 (16%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------- 515
+ L +++ + G V + G G GK++ L I G SG + + G
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71
Query: 516 -TAAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIH------ACSLKKDLELFSHGDQ 567
A V Q+ A + +NI FG + K K I A L+ + L Q
Sbjct: 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP-KDEIDERVREVAELLQIEHLLDRKPKQ 130
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH----TGSELFKEYIMTA 623
LSGGQ+QRV L RA+ ++ ++L+D+P S +DA +EL + +
Sbjct: 131 ---------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR---LQQ 178
Query: 624 LANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
T I+VTH QVE + AD I V+ +G+I Q G
Sbjct: 179 RLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 3e-20
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 37/234 (15%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVS---------- 521
S+ ++ G + G+ GSGKS+LL + G P G V + V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 522 ------------QSAWIQSGNIEENILFG---SPMDKAKYKKVIHACSLKKDLELFSHGD 566
Q A + +EEN+ FG M KA+ +K + LEL
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDE-----QLELVGLAQ 156
Query: 567 QTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTAL 624
DR LSGG +QRV LARA +A I L+D+PFSA+D ++L E + + +
Sbjct: 157 WA---DRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSK 213
Query: 625 ANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDD-LLQAGTDFNALVSAH 676
KT++FV+H + E L + I +++ GRIIQ G ++ +L D+ A AH
Sbjct: 214 LKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH 267
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 40/211 (18%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAAYVSQSAWI-- 526
L GI + V +G V + G GSGKS+LL CI E P SG + + G +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINEL 74
Query: 527 --------QSGN------IEENILFGSP-----MDKAKYKKVIHACSLKKDLELFSHGDQ 567
Q N + ENI P M KA+ ++ A L + + L D
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEE--RALELLEKVGLADKADA 131
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY--IMTALA 625
LSGGQ+QRV +ARAL + + L D+P SA+D EL E +M LA
Sbjct: 132 -----YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD----PELVGEVLDVMKDLA 182
Query: 626 --NKTVIFVTHQVEF-LPAADFILVLKEGRI 653
T++ VTH++ F AD ++ + +GRI
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 4e-20
Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 47/224 (20%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAAYVSQSAWI-- 526
L GIS+ V++G V + G GSGKS+LL C+ G E P SG + + G +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLR 76
Query: 527 -------QSGN------IEENILFGSP-----MDKAKYKKVIHACSLKKDLELFSHGD-- 566
Q N + EN+ P + KA+ ++ A L + + L D
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEARE--KALELLEKVGLADKADAY 133
Query: 567 --QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY--IMT 622
Q LSGGQ+QRV +ARAL D + L D+P SA+D EL E +M
Sbjct: 134 PAQ---------LSGGQQQRVAIARALAMDPKVMLFDEPTSALD----PELVGEVLDVMK 180
Query: 623 ALAN--KTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLL 663
LA T+I VTH++ F AD ++ + +G+II+ G ++
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
|
Length = 240 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 4e-20
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ +L Y L I G+ + I+G +G+GKSTL++ + RL+EP+ G I+
Sbjct: 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1157 IDNIDISTIGLHDLRS---RLGIIPQDPNL----------------FEGTIRCNLDPLEE 1197
++ DI+ + LR R+G+I Q NL ++ T R L E
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
AL++ L D + D S GQ+Q V++ RAL +Q +++
Sbjct: 121 EDKERALSALERVGLADK-----------AYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 1258 DEATASVDTATDNLIQKIIRT 1278
DE AS+D T + ++
Sbjct: 170 DEPIASLDPKTSKQVMDYLKR 190
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 39/218 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAY----- 519
L IS+ + +G A+ G G GKS+LL + L GEV L G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 520 ----------VSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLELFSHGD 566
V Q G+I +N+ +G + K K+ + +L+K L+
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-ALWDEVK 134
Query: 567 QTIIGDR--GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
DR + LSGGQ+QR+ LARAL + ++ LLD+P SA+D + +++ E ++ L
Sbjct: 135 -----DRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI--EELIAEL 187
Query: 625 ANK-TVIFVTH---QVEFLPAADFILVLKEGRIIQAGK 658
+ T++ VTH Q + AD L GR+++ G
Sbjct: 188 KKEYTIVIVTHNMQQAARV--ADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ +L +G+ VL GI G+ + I+G +GSGKSTL++ + L EP G II
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1157 IDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIW-------EAL 1207
ID + + +++LR ++G++ Q NLF +L LE + I EA
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEAE 113
Query: 1208 DKS-QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+++ +L + V D+ P S GQ+Q V++ RAL ++++ DE T+++D
Sbjct: 114 ERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 1e-19
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 53/192 (27%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L G+S+ V RG A+ G G+GKS+L+ + G SGE+ + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE------------ 63
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN----LSGGQKQRV 585
+ F SP D A+ GI LS G++Q V
Sbjct: 64 -----VSFASPRD-AR--------------------------RAGIAMVYQLSVGERQMV 91
Query: 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTHQV-EFLPAA 642
++ARAL ++A + +LD+P +A+ LFK ++ L VIF++H++ E A
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIA 149
Query: 643 DFILVLKEGRII 654
D + VL++GR++
Sbjct: 150 DRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512
+IEN F + + L +S+ + G +A+ G G+GK++L + G I + SG +
Sbjct: 1 RIENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 513 LCG----------TAAYVSQSAWIQ--SGNIEENILFGSPMDKAKYKKVIHACSLKKDLE 560
L G + YV Q Q + ++ E +L G A ++ + KDL+
Sbjct: 59 LNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAET---VLKDLD 115
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG---SELFK 617
L++ ++ ++LSGGQKQR+ +A AL D+ + D+P S +D EL +
Sbjct: 116 LYALKER-----HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 618 EYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRII 654
E A K VI +TH EFL D +L+L G I+
Sbjct: 171 E---LAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 85.9 bits (214), Expect = 3e-19
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 61/218 (27%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+EL + R+G L G++ + G+ ++G G+GKSTL++ L L +P G I+
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIV 1216
+D ++S D R R GI + QL
Sbjct: 59 VDGKEVSFASPRDAR-RAGI---------AMV---------------------YQL---- 83
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-TDNLIQKI 1275
SVG+RQ+V + RAL + AR+L+LDE TA++ A + L K+
Sbjct: 84 ------------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KV 124
Query: 1276 IRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310
IR + V I+HR+ V + +D V VL DGRV
Sbjct: 125 IR-RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 3e-19
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 25/232 (10%)
Query: 1097 IELIDLKVRYGENLPLV-LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+E+ L R+G LV L ++ + G+ G++G G+GK+TL + + P G +
Sbjct: 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV 57
Query: 1156 IIDNIDISTIGLHDLRSRLGIIP--QDPNLFEG-TIRCNLD-PLEEHSDREIWEALDKSQ 1211
+ D DI+ + H+ +RLGI Q P LF T+ N+ + + + A + +
Sbjct: 58 LFDGEDITGLPPHE-IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116
Query: 1212 LGDIVR---------GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ G + P S GQ++ + + RAL ++L+LDE A
Sbjct: 117 EREARERAEELLERVGLADLADRPA----GELSYGQQRRLEIARALATDPKLLLLDEPAA 172
Query: 1263 SVDTA-TDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV-AE 1311
++ T+ L + I + TV + H + V+ +D V VL GRV AE
Sbjct: 173 GLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 3e-19
Identities = 67/211 (31%), Positives = 93/211 (44%), Gaps = 42/211 (19%)
Query: 474 SMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL-----CGTAAYVSQ-SAWIQ 527
+ V G VA+ G G+GKS+LL+ I G I SG +++ G A Y S Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 528 SGN------IEENILFG-SPMDK--AKYKKVIH--ACSLKKDLELFSHGDQTIIGDRGIN 576
N + +NI G P K A+ ++ + A + L DR
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL----------DRLPE 127
Query: 577 -LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-------T 628
LSGGQ+QRV LAR L + I LLD+PFSA+D E M AL + T
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE------MLALVKQLCSERQRT 181
Query: 629 VIFVTHQVEFLPA-ADFILVLKEGRIIQAGK 658
++ VTH + A A I V+ +G+I
Sbjct: 182 LLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 4e-19
Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ +L YG+ L G++ G+ + ++GR G+GK+TL++ + L+ P GRII
Sbjct: 4 LEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 1157 IDNIDISTIGLHDLRSRLGI--IPQDPNLF-EGTIRCNL------DPLEEHSDREIWEAL 1207
D DI+ + H+ R+RLGI +P+ +F T+ NL +E +R++ E
Sbjct: 62 FDGEDITGLPPHE-RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120
Query: 1208 DK-SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+ +L + ++Q+ S G++Q++++ RAL+ + ++L+LDE + +
Sbjct: 121 ELFPRLKER---RNQR--------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 169
Query: 1267 ATDNLIQKIIRTEFKDCTVCTI---AHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322
I + I+ E + TI ++ +D VL +GR+ T LL D
Sbjct: 170 KIVEEIFEAIK-ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 29/208 (13%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--------A 518
+P L I++ ++ G + V G G GK++LL+ I G +P G + L G
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERG 73
Query: 519 YVSQS-AWIQSGNIEENILFG---SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
V Q+ + N+++N+ FG + ++K + ++ H K LE R
Sbjct: 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK--------RY 125
Query: 575 I-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIF 631
I LSGGQ+QRV +ARAL + + LLD+PF A+DA T E + ++ K V+
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT-REQMQTLLLKLWQETGKQVLL 184
Query: 632 VTHQVE---FLPAADFILVLKE-GRIIQ 655
+TH +E F+ A + +L+ GR+++
Sbjct: 185 ITHDIEEAVFM-ATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-19
Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 25/240 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--PAC-- 1152
IE+ +L + YGE L I P + ++G +G GKSTL+++L R+ + P
Sbjct: 2 IEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 1153 -GRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHS-------DR 1201
G+++ D DI I + +LR R+G++ Q PN F +I N+ H D
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ E+L K+ L D V KD +L + S GQ+Q + + RAL + +L+LDE T
Sbjct: 120 IVEESLKKAALWDEV--KD-RLHD----SALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 1262 ASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320
+++D I+++I+ K T+ + H + SD DG + E+ ++
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 7e-19
Identities = 70/269 (26%), Positives = 111/269 (41%), Gaps = 39/269 (14%)
Query: 1074 IPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGE---------NLPLVLHGITCAFPGG 1124
+P I + + +L RYG + ++ G
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG--LHDLRSRLGIIPQDPN 1182
+ +G+VG +GSGKSTL + L L+ P+ G II D D+ G L LR R+ ++ QDP
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 1183 LF---EGTIRCNL-DPLEEHSDRE-------IWEALDKSQLGDIVRGKDQKLETPVLENG 1231
T+ L +PL H + E L+ L + P
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-----YP----- 427
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD----NLIQKIIRTEFKDCTVCT 1287
S GQRQ V++ RAL + ++L+LDE +++D + NL++ + E T
Sbjct: 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE-EL-GLTYLF 485
Query: 1288 IAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315
I+H + V +D V V+ DGR+ E
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRIVEEGPT 514
|
Length = 539 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 7e-19
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 43/249 (17%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+EL + +G L G++ G+ ++G G+GKSTL++ L + P G I+
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 1157 IDNIDISTIGLHDLRSR-LGIIPQDPNLFEGTIRCNLDPLE-----------------EH 1198
ID ++ D + + + Q+ +L NL E +
Sbjct: 67 IDGKPVAFSSPRDALAAGIATVHQELSLVP-----NLSVAENIFLGREPTRRFGLIDRKA 121
Query: 1199 SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
R E L + LG + +T V + S+ QRQ+V + RAL AR+L+LD
Sbjct: 122 MRRRARELLAR--LGLDID-----PDTLV----GDLSIAQRQMVEIARALSFDARVLILD 170
Query: 1259 EATASVDTA-TDNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGR-VAEFD 1313
E TA++ T+ L +IR K + I+HR+ V + +D + VL DGR V
Sbjct: 171 EPTAALTVKETERLF-DLIR-RLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228
Query: 1314 TPGRLLEDK 1322
T ED+
Sbjct: 229 TAAETSEDE 237
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 8e-19
Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 31/256 (12%)
Query: 423 LDRISGFLQEEELQEDATIVL------PRGMTNVAIQIENAEFCWYPSSSRPTLSGISMK 476
L+++ L EE E+ + + + + ++ EN + R L +S +
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--AYVSQ--SAWIQSGNIE 532
+DRG R+A+ G G+GKS+LL + GE+ +SG V++ T Y Q +
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVL 404
Query: 533 ENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQ-TIIGDRGINLSGGQKQRVQLARAL 591
E + + + F+ DQ +G LSGG+K R+ LA+ L
Sbjct: 405 EEL-----SEGFPDGDEQEVRAYLGRF-GFTGEDQEKPVGV----LSGGEKARLLLAKLL 454
Query: 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTHQVEFLPA-ADFILVL 648
Q ++ LLD+P + +D + L + AL + TV+ V+H FL A I ++
Sbjct: 455 LQPPNLLLLDEPTNHLDIESLEALEE-----ALLDFEGTVLLVSHDRYFLDRVATRIWLV 509
Query: 649 KEGRIIQAGKYDDLLQ 664
++ G Y+D L+
Sbjct: 510 EDKVEEFEGGYEDYLE 525
|
Length = 530 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 8e-19
Identities = 73/223 (32%), Positives = 107/223 (47%), Gaps = 42/223 (18%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAA-------- 518
L +S+ + G VA+ G GSGK++LL I G E P SG + G A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 519 ---YVSQS-AWIQSGNIEENILFG-------SPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
+V Q A + + +N+ FG +A+ + +H L K ++L
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE--LLKLVQLDW---- 128
Query: 568 TIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL------FKEYI 620
+ DR LSGGQ+QRV LARAL + + LLD+PF A+DA EL + +
Sbjct: 129 --LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 621 MTALANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
+ T +FVTH Q E L AD ++V+ +GRI Q G D++
Sbjct: 187 -----HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 8e-19
Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 35/243 (14%)
Query: 1096 TIELIDLKVRY--GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
+ + +L + Y G+ L+ ++ G+ +GIVG +GSGKSTL + L L +P+ G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1154 RIIIDNIDISTIGLHDLRSR-LGIIPQDP----NLF---EGTIRCNLDPLEEH-SDREIW 1204
I++D ++ R + ++ QDP N + L P S + I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
E LD+ L + P S GQRQ +++ RAL+ + ++L+LDE T+++
Sbjct: 123 ELLDQVGLPPSFLDR-----RP-----HELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 1265 DTATD----NLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
D + NL+ ++ + + T I+H D LV + D R+A D G+++E
Sbjct: 173 DVSVQAQILNLLLELKKE--RGLTYLFISH------DLALVEHMCD-RIAVMDN-GQIVE 222
Query: 1321 DKS 1323
Sbjct: 223 IGP 225
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 9e-19
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 40/225 (17%)
Query: 461 WYPS--SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA- 517
+P+ S L +S + +G + + G GSGKS+L ILG + SG + G
Sbjct: 10 SFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL 69
Query: 518 ---------------AYVSQSAWIQSGN--------IEENILFGSPMDKAKYKKVIHACS 554
V Q + S N I E + + K + +K
Sbjct: 70 LKLSRRLRKIRRKEIQMVFQDP-MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA---- 124
Query: 555 LKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
L L G + +R + LSGGQ+QRV +ARAL + + + D+P SA+D +
Sbjct: 125 --VLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182
Query: 614 E---LFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRII 654
+ L K+ + T++F+TH + + AD + V+ G+I+
Sbjct: 183 QILDLLKK--LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 9e-19
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 28/238 (11%)
Query: 1096 TIELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
+I++ +L Y E P L + G+ +G++G TGSGKSTLIQ L L++P
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1153 GRIIIDNIDIS--TIGLHDLRSRLGIIPQDP--NLFEGTIR-------CNLDPLEEHSDR 1201
G+IIID +DI+ + L D+R ++G++ Q P LFE TI NL EE +
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN 121
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ A++ L D KD+ +P +G GQ++ V++ + + +IL+LDE T
Sbjct: 122 RVKRAMNIVGL-DYEDYKDK---SPFELSG-----GQKRRVAIAGVVAMEPKILILDEPT 172
Query: 1262 ASVD-TATDNLIQKI--IRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315
A +D D ++ KI + E+ T+ ++H + V +D ++V++ G+ TP
Sbjct: 173 AGLDPKGRDEILNKIKELHKEYN-MTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 24/225 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
++L +L RYG+ L G++ G G++G G+GK+TL++ L L P+ G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPL-------EEHSDREIWEALD 1208
ID D+ LR R+G +PQ+ ++ T+R LD + + + E L+
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
LGD + K L S G R+ V + +AL+ IL++DE TA +D
Sbjct: 117 LVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1269 DNLIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRVAEF 1312
+ ++ +D V H + V + V VL+ G++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---TAA 518
Y R L +S+ + G V V G G GK++LL+ I G + G ++L G
Sbjct: 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP 72
Query: 519 YVSQSAWIQSG------NIEENILFG---SPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
+ Q+ N+ +N+ FG ++KA+ +++ H LE H
Sbjct: 73 GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH----- 127
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA--LANK 627
LSGG +QRV +ARAL + + LLD+PF A+DA T E +E ++ K
Sbjct: 128 --KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALT-REQMQELLLDLWQETGK 184
Query: 628 TVIFVTHQV-EFLPAADFILVLK--EGRIIQA 656
V+ +TH + E L A ++VL GR+++
Sbjct: 185 QVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
|
Length = 259 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-18
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 28/206 (13%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
+ I L +L +R + L L + G+++ I G +G+GK++L++AL L
Sbjct: 389 ADHGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS 447
Query: 1153 GRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIR---CNLDPLEEHSDREIWEALDK 1209
GRI + S L +PQ P L +GT+R C + + SD E+ L K
Sbjct: 448 GRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496
Query: 1210 SQLGDIVRGKDQKLETPVLENGDNW----SVGQRQLVSLGRALLKQARILVLDEATASVD 1265
LGD+ L+ D W S G++Q ++ R LL + + + LDEAT+++D
Sbjct: 497 VGLGDLAER---------LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 1266 TATDNLIQKIIRTEFKDCTVCTIAHR 1291
T++ + ++++ E D TV ++ HR
Sbjct: 548 EETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 74/210 (35%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AA 518
L+ IS+ + G VA+ G GSGK++LL I G + SG +R GT
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 519 YVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR-GIN 576
+V Q A + + +NI FG + + + A K +L + DR
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-AKVTQLLEMVQLAHLADRYPAQ 136
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFVT 633
LSGGQKQRV LARAL + I LLD+PF A+DA EL + + L + T +FVT
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR--WLRQLHEELKFTSVFVT 194
Query: 634 H-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
H Q E + AD ++V+ +G I QAG D +
Sbjct: 195 HDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 25/181 (13%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
IE+ +L +G+ VL GI+ + G+ + I+G +GSGKSTL++ L L EP G I
Sbjct: 2 MIEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1156 IIDNIDIST-IGLHDLRSRLGIIPQDPNLF----------EGTIRCNLDPLEEHSDREIW 1204
+D D+ + LR ++G++ Q NLF ++ E ++ +
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL- 118
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
E L+K V D+ P S GQ+Q V++ RAL ++++ DE T+++
Sbjct: 119 ELLEK------VGLADKADAYP-----AQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 1265 D 1265
D
Sbjct: 168 D 168
|
Length = 240 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 27/236 (11%)
Query: 1097 IELIDLKVRYGENLP-LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
IE+ +L +Y E+ L+ ++ G+ + I+G GSGKST ++ + L+E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDP-NLFEGT-----IRCNLD----PLEEHSDREIWE 1205
IID ++ + D+R ++G++ Q+P N F G + L+ P EE +R + E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-VNE 123
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
AL ++V +D K P +G GQ+Q V++ A+ + +I++LDEAT+ +D
Sbjct: 124 AL------ELVGMQDFKEREPARLSG-----GQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 1266 -TATDNLIQKI--IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318
LI+ I IR ++ TV +I H + V SD VLV+ +G+V TP L
Sbjct: 173 PEGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-18
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 60/262 (22%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI 504
M + +++EN + + + +S +V+ G + + G GSGKS+L ++G +
Sbjct: 1 MMSPLLEVENLT-VEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLL 59
Query: 505 PK----ISGEVRLCGT-----------------AAYVSQSAW------IQSGN-IEENIL 536
P+ SGEV L G A + Q + G+ I E +
Sbjct: 60 PEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR 119
Query: 537 FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN------LSGGQKQRVQLARA 590
+A+ +K + +EL +Q + D LSGG +QRV +A A
Sbjct: 120 LHGKGSRAEARK--------RAVELL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMA 168
Query: 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA------NKTVIFVTHQVEFLP-AAD 643
L + + D+P +A+D T ++ I+ L V+F+TH + + AD
Sbjct: 169 LALKPKLLIADEPTTALDVTTQAQ-----ILDLLKDLQRELGMAVLFITHDLGVVAELAD 223
Query: 644 FILVLKEGRIIQAGKYDDLLQA 665
++V+ +G I++ G +++L
Sbjct: 224 RVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 40/241 (16%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ L RYG L ++ G+ + ++G G+GKSTL L RL G+I
Sbjct: 2 LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI- 58
Query: 1157 IDNIDISTIGLHDLRS-------RLGIIPQDPNL-FEGTIRCNLD--------PLEEHSD 1200
++ HDLR RLG++ Q P L + ++R NL E
Sbjct: 59 -------SVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARA 111
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
R I E L + L + K ++L NG G R+ V + RALL + +L+LDE
Sbjct: 112 R-IAELLARLGLAERADDKVREL------NG-----GHRRRVEIARALLHRPALLLLDEP 159
Query: 1261 TASVDTATDNLIQKIIRTEFKDCTVCTI--AHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318
T +D A+ I +R +D + + H + + D ++VL GRV L
Sbjct: 160 TVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
Query: 1319 L 1319
Sbjct: 220 R 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTA--------- 517
L +S+ V +G + G G+GKS+L+ CI G E P SG V + GT
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKEL 77
Query: 518 -------AYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
+ Q + S + EN+ P++ A K + + LEL D+
Sbjct: 78 RKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKAEIEERVLELLELVGLEDK-- 133
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NK 627
LSGGQKQRV +ARAL + + L D+ SA+D T I+ L N+
Sbjct: 134 ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS-----ILALLRDINR 188
Query: 628 ----TVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663
T++ +TH++E + D + V+++G +++ G +++
Sbjct: 189 ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 6e-18
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 26/211 (12%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG--- 529
+S + + G + G G+GK++LL I + SG+V + G V ++++
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT-VRDPSFVRRKIGV 79
Query: 530 -----------NIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
EN+ + + + + + K I L K L+L + R
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIA--ELSKRLQL-----LEYLDRRVG 132
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
S G KQ+V +ARAL D I +LD+P S +D T + + VIF +H
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
Query: 636 VEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
++ + A D ++VL +G ++ G + L
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-18
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 28/245 (11%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
E+ +++ +L Y + L GI G+ I+G G+GKSTL Q L +++P+
Sbjct: 2 EDYILKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 1153 GRIIIDN--IDISTIGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDR 1201
GRI+ D ID S GL LR +G++ QDP+ LF ++ NL E+ +
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNW-SVGQRQLVSLGRALLKQARILVLDEA 1260
+ AL ++ + + + + S GQ++ V++ L+ + ++LVLDE
Sbjct: 121 RVDNALKRTGI------------EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168
Query: 1261 TASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGR 1317
TA +D + I K++ K T+ H I V + D V V+ +GRV P
Sbjct: 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
Query: 1318 LLEDK 1322
+ +K
Sbjct: 229 VFAEK 233
|
Length = 283 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 8e-18
Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 38/208 (18%)
Query: 474 SMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCG---TAAYVSQ---SAWI 526
+ +G A+ G GSGKS+LL+ I G E P+ SG V + G TAA + S
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLF 76
Query: 527 QSGN------IEENILFG-SPMDK--AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577
Q N +E+N+ G SP K A+ ++ I L G + L
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA-------LARVGLAGLEKRLPGEL 129
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-------TVI 630
SGG++QRV LAR L +D + LLD+PF+A+D +E M L TV+
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE------MLDLVLDLHAETKMTVL 183
Query: 631 FVTHQVE-FLPAADFILVLKEGRIIQAG 657
VTHQ E A ++ L GRI G
Sbjct: 184 MVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 9e-18
Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 443 LPRGMTNVAIQIENAEFC-WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
G+ + +I+ + C Y ++ +P L + + G +V +CG GSGKSSL
Sbjct: 9 SNSGLVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF 68
Query: 502 GEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKK 548
+ G++ + G + + Q + SG+I N+ + +
Sbjct: 69 RMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWE 128
Query: 549 VIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD 608
+ LK ++ G ++ + G N S GQ+Q LARA + + I ++D+ +++D
Sbjct: 129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188
Query: 609 AHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL-QAGT 667
T + ++ +MTA A++TV+ + H+V + AD +LVL G +++ ++LL Q
Sbjct: 189 MAT-ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247
Query: 668 DFNALVSAH 676
F +LV
Sbjct: 248 VFASLVRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 41/223 (18%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---------- 517
L G+S+ V G VA+ G G+GK++LL I+G +P SG +R G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 518 ----AYVSQSAWIQSG-NIEENILFG-SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
YV + I +EEN+L G +AK K L++ ELF +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELF-----PRLK 123
Query: 572 DR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN- 626
+R LSGG++Q + +ARAL + LLD+P + + E I A+
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIREL 178
Query: 627 ----KTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQ 664
T++ V F L AD VL+ GR++ G +LL
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-17
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 37/218 (16%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------- 517
S + +S V G + + G+VG+G++ L + G P SGE+ L G
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 518 -------AYVS----QSAWIQSGNIEENILFGS--------PMDKAKYKKVIHACSLKKD 558
AYV + +I ENI S +D+ K + + A +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERAL--AERYIRR 387
Query: 559 LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
L + + + IG LSGG +Q+V LAR L D + +LD+P +D +E+++
Sbjct: 388 LRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR- 442
Query: 619 YIMTALA--NKTVIFVTHQV-EFLPAADFILVLKEGRI 653
++ LA K ++ ++ ++ E L +D ILV++EGRI
Sbjct: 443 -LIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-17
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 23/221 (10%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK--ISGEVRLCGT------- 516
+ L +S++++ G +A+ G G GK++LL I G + ++G + +
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP 76
Query: 517 -----AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
A A +E+N+ FG + K K A + L+L GD
Sbjct: 77 HKRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDA---A 131
Query: 572 DR-GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY--IMTALANKT 628
LSGG +QR+ +ARA+ + D+ LLD+P SA+DA+ + + +E + L T
Sbjct: 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 629 VIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
++ VTH Q + L AD ++K+GR+ G+ L A D
Sbjct: 192 ILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----TAAY----- 519
L G+S+ + G + G G GK++LL I G SGE+ L G +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 520 -VSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN- 576
V Q+ A + ENI FG + K K I + + L+L +R +
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLRLKKLP-KAEIKE-RVAEALDLVQLEGY---ANRKPSQ 130
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFVT 633
LSGGQ+QRV +ARAL + + LLD+P A+D ++ E + L + T +FVT
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE--LKRLQKELGITFVFVT 188
Query: 634 H-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
H Q E L +D I V+ +G+I Q G +++
Sbjct: 189 HDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT---------------- 516
+ + +G + G+ GSGKS+ + + I +G++ + G
Sbjct: 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK 71
Query: 517 -AAYVSQS-AWIQSGNIEENILFGSPMDK-AKYKKVIHACSLKK--DLELFSHG--DQTI 569
V Q A I +N G + + ++ A L K LE + H D+
Sbjct: 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE-- 129
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKT 628
LSGG +QRV LARAL + DI L+D+ FSA+D + E + A KT
Sbjct: 130 -------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182
Query: 629 VIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLL 663
++F+TH + E + D I+++K G I+Q G D++L
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-17
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 31/216 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L G+S++V+RG VA+ G G+GK++LL I+G + SG + G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 518 --AYVSQSAWI-QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
AYV + I +EEN+L G+ + K + L++ ELF + R
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER---DLEEVYELFPR-LKERRNQRA 134
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN------KT 628
LSGG++Q + +ARAL + LLD+P + + E I A+ T
Sbjct: 135 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIKELRKEGGMT 189
Query: 629 VIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLL 663
++ V F L AD VL+ GRI+ +G +LL
Sbjct: 190 ILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-17
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 1097 IELIDLKVRYG--ENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC-- 1152
+E+ +L V + + ++ G+ +GIVG +GSGKSTL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1153 --GRIIIDNIDISTIGLHDLRS----RLGIIPQDP-----------NLFEGTIRCNLDPL 1195
G +I+D D+ + ++R R+ +I QDP + +R +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETP-VLENGDNWSVGQRQLVSLGRALLKQARI 1254
+ + E L++ L D +++ P L S G RQ V + AL + ++
Sbjct: 126 RAEARKRAVELLEQVGLPD----PERRDRYPHQL------SGGMRQRVMIAMALALKPKL 175
Query: 1255 LVLDEATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
L+ DE T ++D T I +++ V I H + V + +D V+V+ G + E
Sbjct: 176 LIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235
Query: 1312 FDTP 1315
Sbjct: 236 TGPT 239
|
Length = 539 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 2e-17
Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 65/205 (31%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I++EN + + L IS+ ++ G R+ + G G+GKS+LL I GE+ G V
Sbjct: 1 IELENLSKTY---GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 512 RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
W + I + +Q
Sbjct: 58 T------------WGSTVKI-------------------------------GYFEQ---- 70
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL---FKEYIMTALANKT 628
LSGG+K R+ LA+ L ++ ++ LLD+P + +D + L KEY T
Sbjct: 71 -----LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY------PGT 119
Query: 629 VIFVTHQVEFLPA-ADFILVLKEGR 652
VI V+H FL A I+ L++G+
Sbjct: 120 VILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 1108 ENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN--IDISTI 1165
P VL G+ A G+ + ++G G+GKSTL+ L L+ P G ++ID +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1166 GLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIWEALDKSQLGDIV 1216
GL + R R+G++ QDP+ LF + NL E +R + EAL +
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
L S G+++ V++ A+ + +L+LDE TA +D A + I+
Sbjct: 122 ERPTHCL-----------SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1277 R 1277
R
Sbjct: 171 R 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 24/231 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I + + RY + L ++ + G+ + IVG GSGKSTL + L L+ P G I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDP-NLFEGT---------IRCNLDPLEEHSDREIWEA 1206
+ + +S + D+R ++G++ Q+P N F G + P EE +R + +A
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER-VDQA 124
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
L + + D + + +L S GQ+Q V++ L Q I++LDEAT+ +D
Sbjct: 125 LRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 1267 ATDNLIQKIIRT--EFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315
+ + +R E K TV +I H + +D V+V++ G + E TP
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224
|
Length = 279 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+EL V Y +L+ I+ + G+ I I G +G GKSTL++ + LI P G +
Sbjct: 3 LLELKQ--VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGD 1214
+ + D+ST+ R ++ Q P LF T+ NL P + + R A L
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA-LDLLAR 119
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
D L + S G++Q ++L R L +IL+LDE T+++D + I++
Sbjct: 120 FALP-DSILTKNI----TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174
Query: 1275 IIRTEFKD 1282
+I ++
Sbjct: 175 MIHRYVRE 182
|
Length = 223 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 2e-17
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 55/208 (26%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-TAAYVSQS 523
S + + +S +V G V + G+VG+G++ L + G P SGE+ L G S
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 524 AWIQSG-----------------NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGD 566
I++G ++ ENI S
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------- 104
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
LSGG +Q+V LAR L +D + +LD+P VD +E+++ A A
Sbjct: 105 ----------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
Query: 627 KTVIFVTHQVEFLPA-ADFILVLKEGRI 653
K V+ ++ +++ L D ILV+ EGRI
Sbjct: 155 KAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 39/254 (15%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL--- 1170
L+ ++ P G+ G++G +G+GKSTLI+ + L P G +I+D D++T+ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1171 RSRLGIIPQDPNLFEG-TIRCNLD-PLE------EHSDREIWEALDKSQLGDIVRGKDQK 1222
R ++G+I Q NL T+ N+ PLE + R++ E L LG D+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG------DKH 134
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN----LIQKIIRT 1278
P N S GQ+Q V++ RAL ++L+ DEAT+++D AT L+++I R
Sbjct: 135 DSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1279 EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED----------KSSMFL 1327
T+ I H + V D V V+S+G + E T + +S++ L
Sbjct: 190 --LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHL 247
Query: 1328 KLVTEYSSRSSGIP 1341
+ +Y R P
Sbjct: 248 SIPEDYQERLQATP 261
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-17
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 37/219 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTA----------- 517
L +S+++ +G + G G+GKS+LL I E P SG V + G
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEAELRQ 80
Query: 518 -----AYVSQS-AWIQSGNIEENILFG---SPMDKAK-YKKVIHACSLKKDLELFSHGDQ 567
+ Q + S + EN+ F + + KA+ ++V L + L D+
Sbjct: 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL---VGLSDKADR 137
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTAL 624
LSGGQKQRV +ARAL + I L D+ SA+D T EL K+ +
Sbjct: 138 YPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKD--INRE 190
Query: 625 ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662
T++ +TH++E + D + VL +GR+++ G ++
Sbjct: 191 LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 39/252 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE ++ RYG V + + G+ + ++G +GSGK+T ++ + RLIEP G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLF-EGTIRCN--LDPLEEHSDREIWEA------- 1206
ID DI +LR ++G + Q LF T+ N L P +E
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119
Query: 1207 ---LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
LD ++ D R + S GQ+Q V + RAL +L++DE +
Sbjct: 120 LVGLDPAEFAD--RYPHE------------LSGGQQQRVGVARALAADPPLLLMDEPFGA 165
Query: 1264 VDTATDNLIQKIIRTEFKDC------TVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316
+D T + +Q+ EFK T+ + H I +D + ++ +G + + TP
Sbjct: 166 LDPITRDQLQE----EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221
Query: 1317 RLLEDKSSMFLK 1328
+L ++ F+
Sbjct: 222 EILRSPANDFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 30/205 (14%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI-SGEVRLCGTA------- 517
+ L +++ +++G A+ G GSGKS+LL+ I+G + K SG+V L G
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSK 68
Query: 518 ----------AYVSQS-AWIQSGNIEENI---LFGSPMDKAKYKKVIHACSLKKDLELFS 563
Y+ Q+ A I++ +EEN+ L + K + ++ K L L
Sbjct: 69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL 128
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
Q I LSGG++QRV LARA+ + + L D+P ++D E+ +
Sbjct: 129 K--QKIY-----ELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 624 LANKTVIFVTHQVEFLPAADFILVL 648
KT+I VTH E AD ++ L
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 7e-17
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 36/223 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW---- 525
+ +S + G + + G GSGKS+L + G +P SG + G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 526 --IQSG----------------NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
IQ + E + A+ + + L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP------- 419
Query: 568 TIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTA 623
DR + LSGGQ+QRV +ARAL + + +LD+P SA+D + L K+
Sbjct: 420 PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL--QE 477
Query: 624 LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
T +F++H + + AD + V+ +GRI++ G + + +
Sbjct: 478 ELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 7e-17
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 21/188 (11%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT----- 516
Y + L+ IS+ V G +A+ G G GKS+LL + I SG + G
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 517 --------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
+Y +Q+ + +E+N++F + + + A L L +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-ALDLLARFAL----PDS 125
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--N 626
I+ LSGG+KQR+ L R L I LLD+ SA+D +E I + N
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRYVREQN 184
Query: 627 KTVIFVTH 634
V+++TH
Sbjct: 185 VAVLWITH 192
|
Length = 223 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-17
Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 24/244 (9%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE ++ RYG + + G+ + ++G +GSGK+T ++ + RLIEP G I+
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCN-------LDPLEEHSDREIWEALD 1208
ID DIS + +LR ++G + Q LF T+ N L +E + E LD
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
L + P S GQ+Q V + RAL IL++DE ++D T
Sbjct: 120 LVGLDP----SEYADRYP-----HELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 1269 DNLIQ---KIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324
+Q K ++ E T+ + H I + +D + V+ G + ++DTP +L + ++
Sbjct: 171 RKQLQEEIKELQKELGK-TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
Query: 1325 MFLK 1328
F++
Sbjct: 230 DFVE 233
|
Length = 309 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-17
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 14/183 (7%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
+ ++ Y + +L ++ G+ I + G+ G+GK+TL + L LI+ + G I++
Sbjct: 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPN--LFEGTIRCNLDPLEEHSDREIWEALDKSQLGDI 1215
+ I + R +G + QD + LF ++R L +E+ Q +
Sbjct: 60 NGKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLL----GLKEL--DAGNEQAETV 110
Query: 1216 VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275
+ KD L + + S GQ+Q +++ ALL +L+ DE T+ +D + ++
Sbjct: 111 L--KDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 1276 IRT 1278
IR
Sbjct: 169 IRE 171
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 8e-17
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 35/333 (10%)
Query: 333 EDRYRIQLEEMRGVEFRWLRKALYSQA--FITFIFWSSPIFVAAVTFGTSILLGAQLTAG 390
+DR+ L R + +R + +++ + PI +AA + Q+T G
Sbjct: 272 DDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVL---PILIAAPRY-----FSGQITFG 323
Query: 391 SVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQ--------EEELQEDATIV 442
++ A+ F + L F D +A + +L R++ F Q E+ +
Sbjct: 324 GLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRI 383
Query: 443 LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG 502
+ I +EN + LS ++ +V G R+ + G G+GK+SLL + G
Sbjct: 384 DFDDNADHGITLENLSLR--TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
Query: 503 EIPKISGEVRLCGTAA--YVSQSAWIQSGNIEENILFGSPMDKAKYK-----KVIHACSL 555
P SG + + +A ++ Q ++ G + E + + P + V+H L
Sbjct: 442 LWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCY--PNAAPDFSDAELVAVLHKVGL 499
Query: 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
L D+ DR LSGG++QR+ AR L LD+ SA+D T L
Sbjct: 500 GD---LAERLDEEDRWDR--VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRL 554
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVL 648
+ + + L + TVI V H+ L L
Sbjct: 555 Y-QLLKEELPDATVISVGHRPTLWNFHSRQLEL 586
|
Length = 604 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 8e-17
Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 33/222 (14%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVS 521
Y ++P + +S+ V +G + G G+GK++ L + GE+ SG + G +
Sbjct: 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY--SIR 67
Query: 522 QSAWIQSGNI----EENILFG--SPMD------------KAKYKKVIHACSLKKDLELFS 563
++ + + LF + + K++ K+ + L + L L
Sbjct: 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL--LLRVLGLTD 125
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
++ LSGG K+++ LA AL + LLD+P S +D + ++ + I+
Sbjct: 126 KANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEV 179
Query: 624 LANKTVIFVTHQ---VEFLPAADFILVLKEGRIIQAGKYDDL 662
+++I TH E L D I ++ +G++ G +L
Sbjct: 180 RKGRSIILTTHSMDEAEAL--CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 35/220 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L G+S++V +G V G G GK++LL ++G +P SG +RL G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 518 --AYVSQSAWIQSG-NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
AYV Q I +EEN+L G + +K+ + ELF + ++G RG
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP-----DEIYELFPVLKE-MLGRRG 129
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPF-----SAVD--AHTGSELFKEYIMTALANK 627
+LSGGQ+Q++ +ARAL + LLD+P S + L E M
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM------ 183
Query: 628 TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAG 666
++ V ++F AD V++ GR++ +G D+L +
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ +L RYG+ V++G++ + G+ +G++G G+GK+T + L++P G+I+
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1157 IDNIDISTIGLHDLRSRLGII--PQDPNLFEG-TIRCNLD-PLEEHS-DREIWEALDKSQ 1211
+D DI+ + +H R+RLGI PQ+ ++F T+ N+ LE ++ E +
Sbjct: 59 LDGQDITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL 117
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
L + + + S G+R+ V + RAL + L+LDE A VD
Sbjct: 118 LEEF------HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171
Query: 1272 IQKIIR 1277
IQKII+
Sbjct: 172 IQKIIK 177
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513
IE + C+ S S+ L+ I+ R R+AV G G+GKS+L G + SG V +
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 514 CGTAAYVSQSAWIQSGNIEE-----NILFGSPMDKAKYKKV-----IHACSLKKDLELFS 563
G I NI E ++F +P D+ V +L D E +
Sbjct: 64 RGEP--------ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVA 115
Query: 564 HGDQTIIGDRGI---------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
H + + G+ +LSGG+K+RV +A + + + +LD+P + +D E
Sbjct: 116 HRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 615 LF-------KEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
L + Y M TVIF THQ++ +P AD+I V+ +GRI+ G
Sbjct: 176 LIDFLNDLPETYGM------TVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
+ I++E+ F Y ++ L G+S+ + G + A+ G G+GKS+LL + G
Sbjct: 2 DNIIEVEDLHFR-YKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 509 GEVRLCGTAAYVSQSAWIQ---------------SGNIEENILFGS---PMDKAKYKKVI 550
G V++ G W++ S + +++ FG +DK + ++ +
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 551 HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
+ F +LS GQK+RV +A L D D+ +LD+P + +D
Sbjct: 120 EEALKAVRMWDFRDKPPY-------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 611 TGSELFKEYIMTALAN--KTVIFVTHQVEF-LPAADFILVLKEGRIIQAG 657
L + I+ L N KTVI TH V+ AD ++VLKEGR++ G
Sbjct: 173 GQETLME--ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+++ +L Y + + ++ G+ G++G G+GK+T ++ L + P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIR------CNLDPL-EEHSDREIWEALD 1208
I+ I T R LG PQ LF+ T+R L L + E+ L
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
L D K S G ++ +SL AL+ +L+LDE T+ +D A+
Sbjct: 120 VLGLTD-------KANKRA----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 1269 DNLIQKIIRTEFKDCTVC-T---------IAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318
I +I K ++ T + RI ++SDG++ +P L
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIA---------IMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-16
Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 53/253 (20%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
I++ DL V +G+ VL G+ + G +G+VG G+GK+TL++A+ + P G +
Sbjct: 3 MIDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNL-FEGTIR-----------CNLDPLEEHSDREI 1203
++ D+ + R+ +PQD +L FE +R D E +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
A++++ G Q + PV + S G+RQ V L RAL + +L+LDE TAS
Sbjct: 121 ERAMERT-------GVAQFADRPV----TSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 1264 VDTATDNLIQKIIRT-EFKDCTVCTIAHRIPTVIDS-----------DLVLVLSDGRV-- 1309
+D I +RT E V + T + + D +++L+DGRV
Sbjct: 170 LD------INHQVRTLE----LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219
Query: 1310 ----AEFDTPGRL 1318
A+ T L
Sbjct: 220 AGPPADVLTADTL 232
|
Length = 402 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK---ISGEVRLCGTA--------- 517
L+ +S+ V+ G +A+ G GSGK++LL I G + SG++ G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 518 -AYVSQS-AWIQSGNIEENILFGSPM-----DKAKYKKVIHACSLKKDLELFSHGDQTII 570
AYV Q + + E + + + + +K L +DL I
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL-----ALTRIG 137
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVI 630
G+ +SGG+++RV +A L D + +LD+P S +D+ T L A N+ VI
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 631 FVTHQ--VEFLPAADFILVLKEGRIIQAG 657
HQ + D IL+L G I+ +G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I IEN ++ L +S+ + +G ++ G G+GKS+LLS + + K SGE+
Sbjct: 2 ITIENVS---KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 512 RLCG--TAAYVSQ------SAWIQSGNIEENI------LFGS-PMDKAKYKKVIHACSLK 556
+ G + S+ S Q +I + FG P + + K +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR-IIN 117
Query: 557 KDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ +E + DR ++ LSGGQ+QR +A L QD D LLD+P + +D ++
Sbjct: 118 EAIEYL---HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174
Query: 616 FKEYIMTALA---NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
K I+ LA KT++ V H + F +D I+ LK G++++ G D+++Q
Sbjct: 175 MK--ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 28/226 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ L D++ YG LP+ P G+ + I+G +G+GKSTL+ + PA G I+
Sbjct: 2 LALDDVRFSYGH-LPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDI 1215
I+ +D + + ++ Q+ NLF T+ N+ L ++ A + ++
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKVEAA 113
Query: 1216 VR-----GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
G ++L + S GQRQ V+L R L+++ IL+LDE +++D A
Sbjct: 114 AAQVGLAGFLKRLPGEL-------SGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166
Query: 1271 ----LIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRVAE 1311
L+ ++ + T+ + H D V+ L +GR+A
Sbjct: 167 EMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210
|
Length = 231 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------- 516
R ++G+S+ V +G V + G G+GK++ I+G + SG++ L G
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 517 -----AAYVSQSAWIQSG-NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTII 570
Y+ Q A I +EENIL + ++ K L++ LE F +
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEF--HITHLR 127
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTV- 629
+ +LSGG+++RV++ARAL + LLD+PF+ VD ++ + I+ L ++ +
Sbjct: 128 KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI--QKIIKILKDRGIG 185
Query: 630 IFVT-HQV-EFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+ +T H V E L D ++ EG+++ G +++
Sbjct: 186 VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 3e-16
Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 57/251 (22%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQ-SA 524
R L +S+ + G VA+ G G+GKS+LL + GE+ SGEVRL G ++ S
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP--LADWSP 71
Query: 525 WI---------QSGNI------EENILFG-SPM--DKAKYKKVIHACSLKKDLELFSHGD 566
Q ++ EE + G +P +A+ ++ A + DL + D
Sbjct: 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD 131
Query: 567 -QTIIGDRGINLSGGQKQRVQLARALYQDAD------IYLLDDPFSAVD-AHTGSELFKE 618
LSGG++QRVQLAR L Q + LLD+P SA+D AH +
Sbjct: 132 YPQ--------LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH------QH 177
Query: 619 YIMTALANKT------VIFVTHQVEFLPA--ADFILVLKEGRIIQAGKYDDLLQAGT--- 667
+++ VI V H + L A AD I++L +GR++ G ++L T
Sbjct: 178 HVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVLTPETLRR 236
Query: 668 --DFNALVSAH 676
+ LV H
Sbjct: 237 VYGADVLVQPH 247
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 48/242 (19%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ + +G VL I + G+ + I+G +G GKSTL++ + L +P G ++
Sbjct: 4 LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNL-------DPLEEHSDREIWEALD 1208
+D ++ G +G + Q+ L T+ N+ + + E L+
Sbjct: 62 LDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNW----SVGQRQLVSLGRALLKQARILVLDEATASV 1264
L D + S G RQ V++ RAL + ++L+LDE ++
Sbjct: 117 LVGLAGF---------------EDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161
Query: 1265 DTAT----DNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
D T + + ++ TV + H + + +D V+VLS+ PGR+
Sbjct: 162 DALTREELQDELLRLWEET--RKTVLLVTHDVDEAVYLADRVVVLSNR-------PGRIG 212
Query: 1320 ED 1321
E+
Sbjct: 213 EE 214
|
Length = 248 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 4e-16
Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 25/230 (10%)
Query: 1097 IELIDLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IEL ++ + + + L+ ++ P G+ G++G +G+GKSTLI+ + L P GR
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1155 IIIDNIDISTI---GLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLE--EHSDREIWEAL 1207
+++D D++ + L R ++G+I Q NL T+ N+ PLE EI +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+L ++V D+ P S GQ+Q V++ RAL ++L+ DEAT+++D A
Sbjct: 122 T--ELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1268 TDN----LIQKIIRTEFKDCTVCTIAHRIPTVIDS--DLVLVLSDGRVAE 1311
T L++ I R E T+ I H + V+ D V V+ GR+ E
Sbjct: 175 TTRSILELLKDINR-ELG-LTIVLITHEM-DVVKRICDRVAVIDAGRLVE 221
|
Length = 343 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-16
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE I++ Y L GI + G+ + +VG +G+GKSTL++ +++ P G I
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1157 IDNIDISTIGLHD-----LRSRLGIIPQD------PNLFEG---TIRCNLDPLEEHSDRE 1202
++ D+S L LR ++G++ QD N++E + P E R
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR- 116
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ AL+ L R +L S G++Q V++ RA++ IL+ DE T
Sbjct: 117 VPAALELVGLSHKHRALPAEL-----------SGGEQQRVAIARAIVNSPTILIADEPTG 165
Query: 1263 SVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID--SDLVLVLSDGRV 1309
++D T I +++ K T +A ++D V+ L G++
Sbjct: 166 NLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID------NIDISTIG 1166
+L IT P GI+G +GSGKSTL++ L RLIE +I +D DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1167 LHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLEEH---SDREIWEALDKS--QLGDIVRGK 1219
LR +G++ Q PN F +I N+ PL+ H REI + +++ ++G + +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVG-LWKEV 143
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+L +P S GQ+Q +++ RAL + ++L++DE T+ +D I+K+I
Sbjct: 144 YDRLNSP----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199
Query: 1280 FKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE-------FDTPGRLLEDK 1322
+ + ++H V +D V L +G + E F +P L +K
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 69/226 (30%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 474 SMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---TAAYVSQ---SAWIQ 527
+ V+RG RVA+ G G+GKS+LL+ I G + SG + L G T S+ S Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 528 SGN------IEENILFG-------SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
N + +NI G + + K + ++ L
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---------- 128
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-------NK 627
LSGGQ+QRV LAR L ++ I LLD+PFSA+D E M L
Sbjct: 129 -QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE------MLTLVSQVCQERQL 181
Query: 628 TVIFVTHQVE-FLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNAL 672
T++ V+H +E A LV+ +GRI G D+LL +AL
Sbjct: 182 TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASAL 227
|
Length = 232 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 7e-16
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 27/232 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PA 1151
IE+ DLKV +G+ VL G+ P ++G +GSGKSTL++ RLIE
Sbjct: 4 IEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 1152 CGRIIIDNIDISTIGLHDLRSRLGIIPQDPN------LFEG-TIRCNLDPLEEHSDREIW 1204
G + +D DI + + +LR R+ ++ Q PN +FE + L+ L + S +E+
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKELQ 120
Query: 1205 E----ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
E AL+K+QL D V+ +L+ P S GQ+Q + + RAL Q +L+ DE
Sbjct: 121 ERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
TA++D I+ + KD T+ + H SD V L G++ E
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225
|
Length = 250 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-16
Identities = 69/209 (33%), Positives = 92/209 (44%), Gaps = 32/209 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCG---TAA------- 518
L IS+ V +G V + G G GK++LL I G E +G + G T
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDY 78
Query: 519 -YVSQS-AWIQSGNIEENI---LFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
V QS A + + +NI L M +A+ + + EL +
Sbjct: 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVA--------ELLDLVGLPGSERK 130
Query: 574 GIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TV 629
LSGGQ+QRV LARAL + LLD+P SA+DA L E + L + T
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE--IRQLQRRLGVTT 188
Query: 630 IFVTH-QVEFLPAADFILVLKEGRIIQAG 657
I VTH Q E L AD I+V+ G I Q G
Sbjct: 189 IMVTHDQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 9e-16
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 34/210 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-AYVSQSAWIQS 528
L G+S+ V G A+ G G+GKS+L+ + G P SGE+ + G A+ S + +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 529 G--------------NIEENILFG-------SPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
G ++ ENI G +D+ ++ A L L L D
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR--ARELLARLGLDIDPDT 141
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+ +LS Q+Q V++ARAL DA + +LD+P +A+ LF ++ L +
Sbjct: 142 LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIRRLKAQ 194
Query: 628 --TVIFVTHQVEFLPA-ADFILVLKEGRII 654
+I+++H+++ + AD I VL++GR++
Sbjct: 195 GVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-15
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 47/236 (19%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--AYVSQSA 524
RP L +S+ ++ G R+ + G G+GKS+LL + GE+ SGEV Y+SQ
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQE- 74
Query: 525 WIQSGNIEENIL------FGSPMDKAKYKKVIHACSLKKDLELFSHGDQ----------- 567
+ E+ +L FG + + +A D EL + +
Sbjct: 75 --PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132
Query: 568 ----TIIGDRGI--------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT---- 611
+ G +LSGG ++RV LARAL ++ D+ LLD+P + +D +
Sbjct: 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL 192
Query: 612 GSELFKEYIMTALANKTVIFVTHQVEFL-PAADFILVLKEGRIIQ-AGKYDDLLQA 665
L K Y TVI V+H FL A IL L G++ G Y L+
Sbjct: 193 EDYL-KRY------PGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241
|
Length = 530 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 34/228 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ L ++ YGE P+ F G+ IVG +GSGKSTL+ + P GR++
Sbjct: 1 VRLDKIRFSYGE-QPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLF-----EGTIRCNLDP---LEEHSDREIWEALD 1208
I+ +D++ + ++ Q+ NLF E + L P L + I AL
Sbjct: 57 INGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA 114
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
+ L G +++L S G+RQ V+L R L++ +L+LDE A++D A
Sbjct: 115 RVGLA----GLEKRLP-------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 1269 DNLIQKIIRTEFKD--CTVCTIAHRIPTVIDS----DLVLVLSDGRVA 1310
+ ++ + TV + H D+ V+ L +GR+A
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTH---QPEDAKRLAQRVVFLDNGRIA 208
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 1099 LIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
L ++ ++G+ + +L + GK I+G +GSGKSTL+ + L + G++ ++
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 1159 NIDISTIGLHD----LRSRLGIIPQDPNLFEG-TIRCNLD-PLEEHS------DREIWEA 1206
+ + R +LG + Q+ L E T+ NLD L+ + EA
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
L+K L + KL+ + E S G++Q V+L RA+LK +++ DE T S+D
Sbjct: 119 LEKVGL-------NLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDP 167
Query: 1267 ATDNLIQKIIR 1277
+ + ++
Sbjct: 168 KNRDEVLDLLL 178
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 32/209 (15%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV---------- 511
Y P L +S KV G ++ + G G+GKS+L+ + + G++
Sbjct: 16 YAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI 75
Query: 512 ---RLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
L + + Q + SG I N+ P D+ +++ A + +
Sbjct: 76 PLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFDEYSDEEIYGALRVSEG---------- 122
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
G+NLS GQ+Q + LARAL + + +LD+ +++D T + + ++ I N T
Sbjct: 123 -----GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNST 176
Query: 629 VIFVTHQVEFLPAADFILVLKEGRIIQAG 657
++ + H++ + D ILV+ G + +
Sbjct: 177 ILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 36/219 (16%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT----- 516
Y S + L IS+K + G + G G+GKS+L+ I I G + + G
Sbjct: 11 YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI 70
Query: 517 --------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKV-----IHACSLKKDLELFS 563
V Q + G +++NI +G PM K + K V + L K+
Sbjct: 71 DVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGE-KNVDVEYYLSIVGLNKEY-ATR 127
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
NLSGG+ QRV +AR L + ++ LLD+P SA+D T +E+ +E I+
Sbjct: 128 DVK---------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVK- 176
Query: 624 LANK---TVIFVTHQVEFLP-AADFILVLKEGRIIQAGK 658
L NK TVI++TH +E D+ L +G +++ K
Sbjct: 177 LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 40/243 (16%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIP 505
AI+IEN +Y + L I++ + + A+ G G GKS+LL + L
Sbjct: 1 AIEIENLNL-FY--GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 506 KISGEVRLCGTAAY---------------VSQSAWIQSGNIEENILFGSPMDKAKYKKVI 550
+I G+V G Y V Q +I +NI +G + K KK +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 551 HAC---SLKKDLELFSHGDQTIIGDR----GINLSGGQKQRVQLARALYQDADIYLLDDP 603
SLKK L+ + DR + LSGGQ+QR+ +ARAL + ++ LLD+P
Sbjct: 118 DEIVEESLKK-AALWDE-----VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 604 FSAVDAHTGSELFKEYIMTALANK-TVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661
SA+D ++ E ++ L K T++ VTH ++ +D +G +++ G +
Sbjct: 172 TSALDPIATGKI--EELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229
Query: 662 LLQ 664
+
Sbjct: 230 IFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 21/242 (8%)
Query: 1092 PENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP- 1150
++ +E + Y ++ L+ I+ + P G ++G GSGKST+ + + L+ P
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 1151 --ACGRIIIDNIDISTIGLHDLRSRLGIIPQDP-NLFEG-TIRCNLD-PLEEHSDREIWE 1205
+I +D I ++ + D+R ++GI+ Q+P N F G T+ ++ LE
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------R 113
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGD----NWSVGQRQLVSLGRALLKQARILVLDEAT 1261
A+ + ++ IVR D + +L+ D N S GQ+Q V++ L + +I++LDE+T
Sbjct: 114 AVPRPEMIKIVR--DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST 171
Query: 1262 ASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLL 1319
+ +D A I K+IR + + TV +I H I +D VLVL DG++ +P +
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231
Query: 1320 ED 1321
Sbjct: 232 SK 233
|
Length = 282 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-15
Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 40/202 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
+ G+S + G + + G G GKS+L ILG SGE+ G I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD--------ITKL 80
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKD-LELFSHGDQTIIGDRGINLSGGQKQRVQLA 588
+ EE + + +++ L ++ L + H LSGGQ+QR+ +A
Sbjct: 81 SKEER--------RERVLELLEKVGLPEEFLYRYPH-----------ELSGGQRQRIGIA 121
Query: 589 RALYQDADIYLLDDPFSAVDAHTGSE---LFKEYIMTALANK---TVIFVTHQVEFLPA- 641
RAL + + + D+P SA+D ++ L K+ L + T +F++H + +
Sbjct: 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVRYI 176
Query: 642 ADFILVLKEGRIIQAGKYDDLL 663
+D I V+ G+I++ G +++
Sbjct: 177 SDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164
YG+ + G+ G+ G +G G+GK+T I+ L L+ P G + D+
Sbjct: 2 VYGDFK--AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-V 58
Query: 1165 IGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPL-------EEHSDREIWEALDKSQLGDIV 1216
+R +GI+PQ ++ E T R NL+ + ++ ++ E L+ +LG+
Sbjct: 59 REPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-- 116
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
D+ + T +S G R+ + + +L+ Q +L LDE T +D T I I
Sbjct: 117 -AADRPVGT--------YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167
Query: 1277 RTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318
R + T+ H + D + ++ GR+ TP L
Sbjct: 168 RALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 25/235 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ DL YG + + ++ G+ G++G G+GK+TL++ + L+ P G++
Sbjct: 2 LEVTDLTKSYG-SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNL-------DPLEEHSDREIWEALD 1208
ID +D +R ++G++ + L+ T R NL + I E
Sbjct: 61 IDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
+ QL + + + + S G +Q V++ RAL+ ILVLDE T+ +D T
Sbjct: 120 RLQLLEYLDRRVGEF-----------STGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 1269 DNLIQKIIRTEFKDCTVCTI--AHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320
I+ + K+ I +H + V D V+VL G V + L
Sbjct: 169 RRKFHDFIK-QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 31/237 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I ++ Y L ++ P G+ + + G +G+GKSTL++ ++ P G+I+
Sbjct: 2 IRFENVSKAYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1157 IDNIDISTIGLHD---LRSRLGIIPQDPNLFEG-TIRCNLD-PLE--EHSDREI----WE 1205
++ D+S + + LR ++G++ QD L T+ N+ PL REI E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
LD L R +L S G++Q V++ RA++ Q +L+ DE T ++D
Sbjct: 121 VLDLVGLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 1266 TATD----NLIQKIIRTEFKDCTVCTIAHRIPTVIDSDL-VLVLSDGRVAEFDTPGR 1317
L ++I R TV H + V VL L DGR+ ++ G
Sbjct: 170 PDLSWEIMRLFEEINRL---GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
T+ +L Y + V++ ++ G+ +G++G G+GK+T + L+ P G
Sbjct: 2 MSTLVAENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 1154 RIIIDNIDISTIGLHDLRSRLGI--IPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKS 1210
+I++D+ DI+ + +H R+RLGI +PQ+ ++F T+ N+ + E ++++ +A K
Sbjct: 60 KILLDDEDITKLPMH-KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKE 118
Query: 1211 QLGD------IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
+L I +D K + S G+R+ V + RAL + ++LDE A V
Sbjct: 119 ELDALLEEFHITHLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDEPFAGV 170
Query: 1265 DTATDNLIQKIIR 1277
D IQ+II+
Sbjct: 171 DPIAVIDIQRIIK 183
|
Length = 243 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 1097 IELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
I L + + + PL L+G++ G + ++G G+GKSTL+ A+ ++P G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDP--NLFEG-TIRCNLDPLEEHSDR--------E 1202
+I+ID +D++ + + L + QDP TI NL E + E
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ + +L + G + +L + S GQRQ +SL A L +IL+LDE TA
Sbjct: 122 RRRSSFRERLARLGLGLENRLSDRI----GLLSGGQRQALSLLMATLHPPKILLLDEHTA 177
Query: 1263 SVDTATD----NLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
++D T L KI+ E K T + H + +D + +++L G++
Sbjct: 178 ALDPKTAEFVMELTAKIV-EEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 45/251 (17%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ ++ +G+ + I+ G+ + ++G +G GK+TL++ + +P+ G I+
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLF-----EGTIRCNL----DPLEEHSDREIWEAL 1207
+D DI+ + + +G++ Q LF E + L + + EAL
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+ L K +L S GQ+Q V+L RAL+ + ++L+LDE +++D
Sbjct: 122 ELVGLEGFADRKPHQL-----------SGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1268 TDNLIQKIIRTEFKDCTVCTIAHR--IPTVI---D-------SDLVLVLSDGRVAEFDTP 1315
+++ +R E K+ + I V D SD + V++DGR+ + TP
Sbjct: 171 ----LREQMRKELKE-----LQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTP 221
Query: 1316 GRLLEDKSSMF 1326
+ E ++ F
Sbjct: 222 EEIYERPATRF 232
|
Length = 352 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 45/243 (18%)
Query: 451 AIQIENAEFCWYPS--SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
+ + N Y + L+ +S++++RG + + G GSGKS+L + G S
Sbjct: 3 LLSVRNLSIV-YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 509 GEVRLCGTAAYVSQSAWIQSGNIE----------------ENILFGSPMDKAKYKKVIHA 552
G + L G + A ++ IL P+ K
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-SEPLRPHGLSK---- 116
Query: 553 CSLKKDLELFS--HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
S ++ EL + + R LSGGQ+QR+ +ARAL + + +LD+P SA+D
Sbjct: 117 -SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175
Query: 611 TGS-------ELFKEYIMTALANKTVIFVTHQ---VEFLPAADFILVLKEGRIIQAGKYD 660
+ EL KE T +F++H VE + D I V+ G+I++ G +
Sbjct: 176 VQAQILNLLLELKKER------GLTYLFISHDLALVEHM--CDRIAVMDNGQIVEIGPTE 227
Query: 661 DLL 663
+LL
Sbjct: 228 ELL 230
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 42/204 (20%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL--FRLIEPACGRIIIDNIDISTIGLHDL 1170
+L ++ G+ I+G +G+GKSTL+ AL R G ++I+ +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 1171 RSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKS-QLGDIVRGKDQKLETPVLE 1229
R +G +PQD L H + E L + +L +
Sbjct: 81 RKIIGYVPQDDIL--------------HPTLTVRETLMFAAKLRGL-------------- 112
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD-CTVCTI 1288
S G+R+ VS+ L+ +L LDE T+ +D+++ + ++R T+
Sbjct: 113 -----SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
Query: 1289 AHRIPTVIDS--DLVLVLSDGRVA 1310
H+ + I D +L+LS GRV
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 5e-15
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 55/252 (21%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----L 501
M AI++ + +Y + L I++ + + A+ G G GKS+LL C+ L
Sbjct: 3 MKIPAIEVRDLNL-YY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
Query: 502 GEIPKISGEVRLCGTAAYVSQSAWI-----------QSGN-----IEENILFGSPMDKAK 545
++ GEV L G Y + Q N I +N+ +G + K
Sbjct: 60 IPGARVEGEVLLDGKNIY-DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIK 118
Query: 546 YKKVIHAC---SLK--------KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
K + SLK KD + + LSGGQ+QR+ +ARAL
Sbjct: 119 -DKELDEIVESSLKKAALWDEVKDR----------LHKSALGLSGGQQQRLCIARALAVK 167
Query: 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-TVIFVTHQVEFLPAA---DFILVLKE 650
++ L+D+P SA+D + ++ E ++T L K T++ VTH ++ AA D+
Sbjct: 168 PEVLLMDEPTSALDPISTLKI--EELITELKKKYTIVIVTHNMQ--QAARVSDYTAFFYL 223
Query: 651 GRIIQAGKYDDL 662
G +++ G D +
Sbjct: 224 GELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 47/259 (18%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--PAC---GRI 1155
+L + YG +L I + +G +G GKST ++ R+ + P C G +
Sbjct: 10 NLNLWYGSKQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 1156 IIDNIDISTIGLHD--LRSRLGIIPQDPNLFEGTIRCN----------------LDPLEE 1197
ID ID+ ++ + LR+++G++ Q PN F +I N LD + E
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE 127
Query: 1198 HSDREI--WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
S + WE +LGD R KD E S GQ+Q + + RA+ + +L
Sbjct: 128 KSLTSVGLWE-----ELGD--RLKDSAFEL---------SGGQQQRLCIARAIAVKPTML 171
Query: 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314
++DE +++D N+I+ +I+ K+ T+ + H + SD V GR+ E++T
Sbjct: 172 LMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
Query: 1315 PGRLLEDKSSMFLKLVTEY 1333
+ ++ S Y
Sbjct: 232 TQEIFKNPQS---SKTKRY 247
|
Length = 251 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 68/226 (30%), Positives = 97/226 (42%), Gaps = 51/226 (22%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L I++ ++ G VA+ G G+GKS+LL CI + SG + L GT
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 518 ----AYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI--- 569
+ Q I+ + EN+L G + YK + L FS D+
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHG----RLGYKPTWRSL-----LGRFSEEDKERALS 128
Query: 570 ------IGD----RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
+ D R LSGGQ+QRV +ARAL Q D+ L D+P +++D T +
Sbjct: 129 ALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT-----SKQ 183
Query: 620 IMTALA------NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGK 658
+M L TVI HQV+ AD I+ LK G I+ G
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 7e-15
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--------------A 518
IS V RG + G+VGSG++ L++C+ G + GE+RL G A
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 519 YVSQS----AWIQSGNIEENILFGSPMDKAKYKKVI----------HACSLKKDLELFSH 564
Y+++S + + +I +N+ + YK + A + ++ L L H
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH 401
Query: 565 G-DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
+Q I LSGG +Q+V +++ L ++ + D+P +D +E++K +M
Sbjct: 402 SVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK--VMRQ 454
Query: 624 LAN--KTVIFVTHQV-EFLPAADFILVLKEGRIIQ 655
LA+ K ++ V+ ++ E + D I V EGR+ Q
Sbjct: 455 LADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 7e-15
Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 36/248 (14%)
Query: 1101 DLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC-----G 1153
+L V + + +V + G++ G+ +GIVG +GSGKS L +A+ L+ G
Sbjct: 6 NLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 1154 RIIIDNIDISTIG---LHDLR-SRLGIIPQDP-----------NLFEGTIRCNLDPLEEH 1198
I+ D D+ ++ L +R + +I QDP + +R + L +
Sbjct: 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKK 125
Query: 1199 SDRE-IWEALDKSQLGDIVRGKDQKLET-PVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
+E E L+ + D +++L++ P S G RQ V + AL ++L+
Sbjct: 126 EAKERAIELLELVGIPD----PERRLKSYPH-----ELSGGMRQRVMIAMALALNPKLLI 176
Query: 1257 LDEATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
DE T ++D I +++ K + I H + V + +D V V+ GR+ E
Sbjct: 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 1314 TPGRLLED 1321
+ ++
Sbjct: 237 PVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 8e-15
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 487 GMVGSGKSSLLSCILGEIPKISGEVRLCGT-----AAY------VSQS-AWIQSGNIEEN 534
G G GK++LL + G SG + L G + V QS A +EEN
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEEN 62
Query: 535 ILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG-INLSGGQKQRVQLARALYQ 593
+ FG M K ++ + + L L + DR LSGGQ+QRV LARAL
Sbjct: 63 VAFGLKMRKVPRAEI--KPRVLEALRLVQLEE---FADRKPHQLSGGQQQRVALARALVF 117
Query: 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFVTH-QVEFLPAADFILVLK 649
I LLD+P SA+D ++ E + + + T +FVTH Q E + +D I +++
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLE--LKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMR 175
Query: 650 EGRIIQAG 657
+G+I Q G
Sbjct: 176 KGKIAQIG 183
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 57/187 (30%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA----YVSQ 522
R SG+S + G + + G GSGK++LL I G +P +G ++L G
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA 74
Query: 523 SAWIQSGN-------IEENILF------GSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
++ N + EN+ F G +D I A LE G +
Sbjct: 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAA-----LEAV--GLAPL 120
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKT 628
LS GQK+RV LAR L + I++LD+P +A+DA LF E I LA
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHLAQGGI 179
Query: 629 VIFVTHQ 635
VI TH
Sbjct: 180 VIAATHI 186
|
Length = 207 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 8e-15
Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 26/258 (10%)
Query: 1083 EDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQ 1142
+ S P++ IE DL V YG+ L ++ P + ++G +G GKST ++
Sbjct: 26 DPSGDPAASSGETVIEARDLNVFYGDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLR 83
Query: 1143 ALFR---LIEPAC---GRIIID--NIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCN--- 1191
+ R LI+ A G + N+ + + LR R+G++ Q PN F +I N
Sbjct: 84 CINRMNDLID-AARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAY 142
Query: 1192 ---LDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248
+ + D + E+L ++ L D V KDQ + +G + S GQ+Q + + RA+
Sbjct: 143 GLKIQGYDGDIDERVEESLRRAALWDEV--KDQ-----LDSSGLDLSGGQQQRLCIARAI 195
Query: 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTV--IDSDLVLVLSD 1306
++++DE +++D + I+ +I ++ TV + H + I + L+
Sbjct: 196 APDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255
Query: 1307 GRVAEFDTPGRLLEDKSS 1324
G + EFD ++ E+ S
Sbjct: 256 GELVEFDDTDKIFENPES 273
|
Length = 285 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 8e-15
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE---- 1149
IE ++L+V YG N V+ G+ P ++G +G GKSTL++ RL+E
Sbjct: 2 KFAIETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEE 59
Query: 1150 ---PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCN----------LDPL 1195
R+ NI + ++R +G++ Q PN F TI N +
Sbjct: 60 ARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK 119
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
+E +R W AL K+ L D V KD+ + P N S GQRQ + + RAL + +IL
Sbjct: 120 KELDERVEW-ALKKAALWDEV--KDRLNDYP-----SNLSGGQRQRLVIARALAMKPKIL 171
Query: 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
++DE TA++D I++++ K+ T+ + H
Sbjct: 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 9e-15
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 56/238 (23%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCGT-------- 516
+ G+S ++ +G + + G GSGKS L I+G +PK + GE+ G
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 517 ---------AAYVSQSAWIQSGN--------IEENILFGSPMDKAKY--KKVIHACSL-- 555
A + Q + S N I E + K ++ I L
Sbjct: 81 ELRKIRGKEIAMIFQDP-MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVG 139
Query: 556 ----KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
++ L+ + H LSGG +QRV +A AL + + + D+P +A+D
Sbjct: 140 IPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV 188
Query: 612 GS---ELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665
+ +L KE + +I +TH + + AD + V+ GRI++ G +++ +
Sbjct: 189 QAQILDLLKE--LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 9e-15
Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 38/218 (17%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ L ++ V +G+ VL ++ GK + ++G G+GKSTL++ + L+ P G I
Sbjct: 5 VSLENVSVSFGQRR--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQ----DPNLFEGTIR-CNLDPLEEHSDREIWEALDKSQ 1211
+ + R+G +PQ D L R L P + D I AL + Q
Sbjct: 63 -----------RNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED--ILPALKRVQ 109
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT----A 1267
G ++ QKL S G+ Q V L RALL + ++LVLDE T VD A
Sbjct: 110 AGHLIDAPMQKL-----------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 1268 TDNLIQKIIRTEFKDCTVCTIAHRIPTVI-DSDLVLVL 1304
+LI + +R E DC V ++H + V+ +D VL L
Sbjct: 159 LYDLIDQ-LRREL-DCAVLMVSHDLHLVMAKTDEVLCL 194
|
Length = 251 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF---- 1184
I+G TGSGKS L++ + I+P G+I+++ DI+ L + + +PQ+ LF
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYVPQNYALFPHMT 87
Query: 1185 -----EGTIRCNLDPLEEHSDR--EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237
++ +E + EI E L L ++K ET S G
Sbjct: 88 VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL------LNRKPET--------LSGG 133
Query: 1238 QRQLVSLGRALLKQARILVLDEATASVDTAT-DNLIQ--KIIRTEFKDCTVCTIAHRIPT 1294
++Q V++ RAL+ +IL+LDE +++D T + L + K IR EF TV + H
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEE 192
Query: 1295 V-IDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
+D V ++ +G++ + P + + + F
Sbjct: 193 AWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL----RSRLGIIPQ 1179
G+ I+G +GSGKST ++ L RLIEP G+I ID +I +L R ++G++ Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 1180 DPNLF-EGTIRCNLD--------PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
LF TI N P +E ++ AL+ +L LE
Sbjct: 79 QFALFPHMTILQNTSLGPELLGWPEQERKEK----ALELLKLVG--------LEEYEHRY 126
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC------T 1284
D S G +Q V L RAL + IL++DEA + A D LI+ ++ E K T
Sbjct: 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFS----ALDPLIRDSMQDELKKLQATLQKT 182
Query: 1285 VCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328
+ I H + I D ++++ G + + TP +L + ++ +++
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 37/228 (16%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------- 517
L G+ + V G V + G G+GK++LL I G + +G V + G
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA 74
Query: 518 -----AYVSQSAWIQ-SGNIEENILFG--------SPMDKAKYKKVIHACSLKKDLELFS 563
A V Q + ++ + + G + V A
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERA---------ME 125
Query: 564 HGDQTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
DR + +LSGG++QRV LARAL Q + LLD+P +++D + +
Sbjct: 126 RTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185
Query: 623 ALANKTVIFVTHQVEFLPAA---DFILVLKEGRIIQAGKYDDLLQAGT 667
KT + H ++ AA D +++L +GR+ AG D+L A T
Sbjct: 186 VDDGKTAVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVLTADT 231
|
Length = 402 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 61/254 (24%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPA 1151
G I + DL + YG+ L I + ++G +G GKST ++ L R+ + P+
Sbjct: 1 MGKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1152 C---GRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCN--------------- 1191
G +++D DI S I ++ LR R+G++ Q PN F +I N
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1192 LDPLEEHSDRE--IWEA----LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245
LD + E S + +W+ L KS LG S GQ+Q + +
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALG--------------------LSGGQQQRLCIA 158
Query: 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH------RIPTVIDSD 1299
RAL + +L++DE T+++D + I+++I+ KD T+ + H RI SD
Sbjct: 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRI-----SD 213
Query: 1300 LVLVLSDGRVAEFD 1313
+G + EF
Sbjct: 214 KTAFFLNGEIVEFG 227
|
Length = 250 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 62/211 (29%), Positives = 91/211 (43%), Gaps = 29/211 (13%)
Query: 475 MKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA--------YVSQS--- 523
+ D+G + + G G+GK++LL ILG IP G V++ G + YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 524 AWIQSGNIEENILFGSP--------MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
AW ++ ++ G A + V A EL DR +
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL---------ADRPV 111
Query: 576 -NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634
LSGGQ+QRV +ARAL + LLD+PF+ +D T L + +I A A ++ TH
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 635 QVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
+ A +VL GR+I G L
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADGTPQQLQDP 202
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 44/220 (20%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISGEVRLCGTAAYVSQSAWIQS 528
L GI ++V G VA+ G GSGK++LL CI L E P+ +G +R+ ++S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSLSQQK 77
Query: 529 GNIE----------------------ENILFGSPMDKAKYKKVIHACSLKKDLELFSH-- 564
G I ENI+ G + K + + EL +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI----VKGEPKEEATARARELLAKVG 133
Query: 565 --GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
G +T R LSGGQ+QRV +ARAL ++ L D+P SA+D EL E + T
Sbjct: 134 LAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD----PELVGEVLNT 186
Query: 623 --ALA--NKTVIFVTHQVEFL-PAADFILVLKEGRIIQAG 657
LA +T++ VTH++ F AD + + +GRI++ G
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 15/240 (6%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I L ++ Y + P L I G+ IGI+G+ GSGKSTL L L+ P G+++
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1157 IDNIDISTIG-LHDLRSRLGIIPQDPNL-FEG-TIRCNLDPLEEH---SDREIWEALDKS 1210
+ ID L +R +GI+ Q+P F G T+ +L E+ EI + +D++
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT-D 1269
L +I K + L S GQ Q V+L L + L+ DE T+ +D +
Sbjct: 121 -LAEIGLEKYRHRSPKTL------SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 1270 NLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKL 1329
++++I + K T+ I H + + D+D ++V+ G++ P +L D S L L
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGL 233
|
Length = 274 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 52/250 (20%)
Query: 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LG 502
A+++ N +Y L ISM++ + A G G GKS+LL C L
Sbjct: 22 EQTALEVRNLNL-FYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV 78
Query: 503 EIPKISGEVRLCGTAAYVSQSAWI----------QSGN-----IEENILFGSPMDKAKYK 547
+ +I GE+RL G Y + Q N I EN+++G + +
Sbjct: 79 DNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR 138
Query: 548 KVIHAC---SLK--------KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596
+V+ SL+ KD + + LSGGQ+QR+ +ARA+ + +
Sbjct: 139 RVLDEAVERSLRGAALWDEVKDR----------LHENAFGLSGGQQQRLVIARAIAIEPE 188
Query: 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANK-TVIFVTHQVEFLPAA---DFILVLKEGR 652
+ LLD+P SA+D S L E ++T L +K T++ VTH ++ AA D+ + G+
Sbjct: 189 VLLLDEPTSALDPI--STLKIEELITELKSKYTIVIVTHNMQ--QAARVSDYTAFMYMGK 244
Query: 653 IIQAGKYDDL 662
+++ G D L
Sbjct: 245 LVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-14
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---- 517
Y + R L +S V+ G RV + G GSGKS+LLS +L + GE+++ G +
Sbjct: 1227 YTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSV 1285
Query: 518 ---------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
+ Q +I SG +N+ + KV LK +E F
Sbjct: 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
++ D G LS G KQ + LAR++ A I LLD+P + +D T ++ ++ + + +N T
Sbjct: 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIRKTLKQSFSNCT 1404
Query: 629 VIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
VI H+VE L LV++ + Q LL + F +SA
Sbjct: 1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 2e-14
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 14/221 (6%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+++ + +G L L I P G+ IVG+ G GKS+L+ A+ ++ G++
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 1157 IDNIDISTIGLHDLRSR----LGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDK 1209
N + S RSR + Q P L T+ N+ P + + + +A
Sbjct: 60 WSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSL 119
Query: 1210 SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT-AT 1268
D++ DQ T + E G N S GQRQ + + RAL + I+ LD+ +++D +
Sbjct: 120 QPDIDLLPFGDQ---TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLS 176
Query: 1269 DNLIQKIIRTEFKD--CTVCTIAHRIPTVIDSDLVLVLSDG 1307
D+L+Q+ I +D T+ + H++ + +D ++ + DG
Sbjct: 177 DHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 17/227 (7%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---- 517
Y L IS + G RV + G GSGKS+LLS L + G++++ G +
Sbjct: 12 YTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSV 70
Query: 518 ---------AYVSQSAWIQSGNIEENI-LFGSPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
+ Q +I SG +N+ +G D+ +K V LK +E F
Sbjct: 71 PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK-VAEEVGLKSVIEQFPGQLD 129
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
++ D G LS G KQ + LAR++ A I LLD+P + +D T ++ ++ + A A+
Sbjct: 130 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADC 188
Query: 628 TVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
TVI H++E + LV++E ++ Q LL + F +S
Sbjct: 189 TVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-14
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 23/127 (18%)
Query: 494 SSLLSCILGEIPKISGEVRLCGTA--------------AYVSQSAWIQSGN-IEENILFG 538
S+LL I G + SG + L G V Q + + EN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 539 SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIY 598
+A + A + L D+ + LSGGQKQRV +ARAL + +
Sbjct: 61 LRDKEAD-ARAEEALE---RVGLPDFLDR----EPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 599 LLDDPFS 605
LLD+P +
Sbjct: 113 LLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 51/220 (23%), Positives = 106/220 (48%), Gaps = 28/220 (12%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------- 516
R ++ +S++V+ G V + G G+GK++ I+G + SG++ L
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75
Query: 517 -----AAYVSQSAWIQSG-NIEENILFGSPM---DKAKYKKVIHACSLKKDLELFSHGDQ 567
Y+ Q A I +E+NI+ + D K ++ +L ++ +
Sbjct: 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-----T 130
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+ + +LSGG+++RV++ARAL + LLD+PF+ VD ++ + I+ L ++
Sbjct: 131 HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI--QRIIKHLKDR 188
Query: 628 TV-IFVT-HQV-EFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+ + +T H V E L D ++ +G+++ G ++++
Sbjct: 189 GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 38/223 (17%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI--LGEIPKISGEVRLCGTAA------- 518
L I + +D+G V + G GSGKS+LL CI L EI SG++ + G
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT--SGDLIVDGLKVNDPKVDE 72
Query: 519 -YVSQSAWI--QSGNI------EENILFGSP-----MDKAKYKKVIHACSLKKDLELFSH 564
+ Q A + Q + EN++FG P K + +K K L +H
Sbjct: 73 RLIRQEAGMVFQQFYLFPHLTALENVMFG-PLRVRGASKEEAEKQARELLAKVGLAERAH 131
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
+ LSGGQ+QRV +ARAL + L D+P SA+D E+ K +M L
Sbjct: 132 HYPS-------ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK--VMQDL 182
Query: 625 ANK--TVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLLQ 664
A + T++ VTH++ F A ++ + +GRI + G L++
Sbjct: 183 AEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 48/231 (20%)
Query: 484 AVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-----------------AYVSQSAWI 526
A+ G GSGK+SL++ I G G + L G YV Q A +
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 527 -QSGNIEENILFG-SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584
+ N+ +G +A++ +++ L H ++ LSGG+KQR
Sbjct: 88 FPHYTVRGNLRYGMWKSMRAQFDQLV-------ALLGIEH----LLDRYPGTLSGGEKQR 136
Query: 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT---VIFVTHQV-EFLP 640
V + RAL ++ L+D+P +++D E+ Y+ L ++ +++V+H + E L
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREIL-PYLER-LRDEINIPILYVSHSLDEVLR 194
Query: 641 AADFILVLKEGRIIQAGKYDDLL------------QAGTDFNALVSAHHEA 679
AD ++VL+ G++ +G +++ + + V H
Sbjct: 195 LADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSVLEGTVLEHDPR 245
|
Length = 352 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 36/259 (13%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IEPA--CGRI 1155
DL V YG+ + GI F K ++G +GSGKST +++L R+ I+ A G+I
Sbjct: 25 DLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82
Query: 1156 IIDNIDIST--IGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQL 1212
+ IDI+ I ++++R +G++ Q PN F +I N+ LE + DK L
Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVK------DKKVL 136
Query: 1213 GDIVRG--KDQKLETPVLENGDN----WSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+IV K L V ++ S GQ+Q + + RA+ + IL++DE +++D
Sbjct: 137 DEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP 196
Query: 1267 ATDNLIQKIIRTEFKDCTVCTIAH------RIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+ +++ + K+ T+ + H R SD G + E+D +
Sbjct: 197 ISTMQLEETMFELKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNIFT 251
Query: 1321 DKSSMFLKLVTEYSSRSSG 1339
+ L+ +Y S G
Sbjct: 252 NPK---LQSTNDYVSGHFG 267
|
Length = 267 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 41/212 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L IS V++G + G G+GK++ + ILG I SGEV G +
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-----------KPL 64
Query: 530 NIEENILFGS-PMDKAKYKKV------IHACSLK---------------KDLELFSHGDQ 567
+I G P ++ Y K+ ++ LK + LEL + ++
Sbjct: 65 DIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK 124
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT-ALAN 626
+ LS G +Q+VQ A+ D ++ +LD+PFS +D EL K+ I A A
Sbjct: 125 RVE-----ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAG 178
Query: 627 KTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
KTVI THQ+E + D +L+L +GR + G
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 39/248 (15%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
E+ +L V YG++ +L G++ P G+ ++GR G GK+TL++ L L+ G I +
Sbjct: 2 EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1158 DNIDISTIGLHDLRSRLGI--IPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLG- 1213
D DI+ + H+ R+R GI +PQ +F T+ NL G
Sbjct: 60 DGEDITKLPPHE-RARAGIAYVPQGREIFPRLTVEENL------------------LTGL 100
Query: 1214 DIVRGKDQKLET------PVLEN-----GDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ + +K+ PVL+ G + S GQ+Q +++ RAL+ + ++L+LDE T
Sbjct: 101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
Query: 1263 SVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
+ + I ++IR + + + + +D V+ GRV L
Sbjct: 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
Query: 1320 EDKSSMFL 1327
EDK +L
Sbjct: 221 EDKVRRYL 228
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
E+ L R+G ++ ++ G+ +G++G G+GK+TL + +P+ G +I
Sbjct: 6 EVRGLSKRFGGLT--AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63
Query: 1158 DNIDISTIGLHDLRSRLGIIP--QDPNLFEG---------TIRCNLD-------PLEEHS 1199
DI+ + H +RLGI Q LF G L P
Sbjct: 64 RGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKE 122
Query: 1200 DREI----WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
+RE E L+ LG+ + P N S GQ++ + + RAL Q ++L
Sbjct: 123 EREARERARELLEFVGLGE-------LADRPA----GNLSYGQQRRLEIARALATQPKLL 171
Query: 1256 VLDEATASV-DTATDNLIQKI--IRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
+LDE A + T+ L + I +R T+ I H + V+ +D ++VL+ G V
Sbjct: 172 LLDEPAAGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 38/210 (18%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAYVS 521
I++ + G V G G GKS+LL I G SG++ + V
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81
Query: 522 QS-AWIQSGNIEENILFGSPMDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGIN 576
QS A ++ EN+ FG + AK ++V + L+L +H ++ +
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV---LQL-AH----LLDRKPKA 133
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG-------SELFKEYIMTALANKTV 629
LSGGQ+QRV + R L + ++LLD+P S +DA S L K +T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL------GRTM 187
Query: 630 IFVTH-QVEFLPAADFILVLKEGRIIQAGK 658
I+VTH QVE + AD I+VL GR+ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 27/234 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ +L +YG+ + G++ G+ G++G G+GK+T I+ L L++P GR
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD--------PLEEHSDREIWEAL 1207
+ D+ ++R R+GI+ QD ++ + T NL P E +R I E L
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRER-IDELL 116
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
D L + D+ ++T +S G R+ + + R+L+ + +L LDE T +D
Sbjct: 117 DFVGLLEA---ADRLVKT--------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
Query: 1268 TDNLIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318
T + + I E T+ H + D V ++ GR+ TP L
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 66/237 (27%), Positives = 100/237 (42%), Gaps = 46/237 (19%)
Query: 1097 IELIDLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
I L R+ + V + G++ G+ G++G G+GK+T ++ L L+EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNL---------------DPLEEH 1198
+D D+ + R RLG + L++ T R NL LEE
Sbjct: 62 ATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 1199 SDR-EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
+DR + E LD+ R +S G RQ V++ RAL+ +L+L
Sbjct: 121 ADRLGMEELLDR-------RVGG-------------FSTGMRQKVAIARALVHDPPVLLL 160
Query: 1258 DEATASVD-TATDNLIQKI--IRTEFKDCTVCT-IAHRIPTVIDSDLVLVLSDGRVA 1310
DE T +D AT L + I +R K T I + + D V+VL GRV
Sbjct: 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDR--VVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ ++ R+G L I+ + G+ G++G G+GK+T I+ + +I P G ++
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEE-----HSD--REIWEALD 1208
D + R+R+G +P++ L+ + L L + + R I E L+
Sbjct: 59 FDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
+ +L + ++++E S G +Q V A++ +L+LDE + +D
Sbjct: 115 RLELSEY---ANKRVEE--------LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 1269 DNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
L++ +IR E TV H++ V + D VL+L+ GR
Sbjct: 164 VELLKDVIR-ELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 6e-14
Identities = 60/232 (25%), Positives = 94/232 (40%), Gaps = 35/232 (15%)
Query: 1097 IELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
+E+ ++ YG L I+ + G+ + +VG +G GKSTL++ + L P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFE-GTIRCN-LDPLE--EHSDREIWE----A 1206
+++D ++ G + Q L T+ N LE E E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
L+ L +L S G RQ V+L RAL +L+LDE +++D
Sbjct: 116 LELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1267 ATDNLIQ----KIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS--DGRVAE 1311
T +Q I R K TV + H I + +D V+VLS GR+
Sbjct: 165 LTREQLQEELLDIWRETGK--TVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 44/207 (21%)
Query: 464 SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG--EIPKISGEVRLCGTAAYVS 521
S + L +S K G A+ G G+GKS+LL+ + G +SGEV + G
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR----- 73
Query: 522 QSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI-------IGDRG 574
P+DK ++K+I + H T+ RG
Sbjct: 74 ------------------PLDKRSFRKIIGYV----PQDDILHPTLTVRETLMFAAKLRG 111
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTVIFV 632
+ SGG+++RV +A L + + LD+P S +D+ + ++ ++ LA +T+I
Sbjct: 112 L--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS--LLRRLADTGRTIICS 167
Query: 633 THQV--EFLPAADFILVLKEGRIIQAG 657
HQ E D +L+L +GR+I G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 6e-14
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 26/210 (12%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF-EGT 1187
++G +G GK+TL++ L +P G I++D D++ + H LR + ++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1188 IRCNL--------DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239
+ N+ P E R + EAL QL + K +L S GQ+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPR-VLEALRLVQLEEFADRKPHQL-----------SGGQQ 106
Query: 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT--EFKDCTVCTIAHRIPTVID 1297
Q V+L RAL+ + +IL+LDE +++D + +Q ++T E T + H +
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT 166
Query: 1298 -SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
SD + ++ G++A+ TP + E+ +++F
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 41/218 (18%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------- 517
L G+ + V RG VA+ G GSGKS+LL+ + G SGEVRL G
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80
Query: 518 ----------AYVSQS-AWIQSGNIEENILF-------GSPMDKAKYKKVIHACSLKKDL 559
+V QS I + EN+ S +A K ++ A L K L
Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL 140
Query: 560 ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
+ LSGG++QRV LARA D+ D+P +D TG ++
Sbjct: 141 THYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD-- 187
Query: 620 IMTALANK---TVIFVTHQVEFLPAADFILVLKEGRII 654
++ AL + T++ VTH + D L L+ GR++
Sbjct: 188 LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 6e-14
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 1100 IDLKVRYGENLPLVLHGITCAF--PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
R G+ + F PG I GR+GSGK+TLI+ + L P G I++
Sbjct: 3 ARFSKRLGD------FSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56
Query: 1158 DNIDIST----IGLHDLRSRLGIIPQDPNLFEG-TIRCNLD--------PLEEHSDREIW 1204
+ + I L + R+G + Q+ LF ++R NL S +
Sbjct: 57 NGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVI 116
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
E L +G ++ +L S G++Q V++GRALL R+L++DE A++
Sbjct: 117 ELLG---IGHLLGRLPGRL-----------SGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162
Query: 1265 DTATDNLIQKIIRT---EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320
D I + EF + ++H + V+ +D V+VL DGRVA +
Sbjct: 163 DDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
Query: 1321 DK 1322
Sbjct: 222 SP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 7e-14
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 44/251 (17%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+E +L VR G +L ++ G+ + I+G G+GKSTL++AL + P G +
Sbjct: 2 MLEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNL-F----EGTIRCNLDPL---EEHSDREIWEAL 1207
++ ++ +L R ++PQ +L F E + P D + AL
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 1208 DKSQLGDIVRGKD-QKLETPVLENGDNWSVGQRQLVSLGRALL------KQARILVLDEA 1260
+ L + G+D +L S G++Q V L R L R L+LDE
Sbjct: 120 AQVDLAHL-AGRDYPQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEP 167
Query: 1261 TASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID-------SDLVLVLSDGRVAE 1311
T+++D A + + ++ R + V + H D +D +++L GR+
Sbjct: 168 TSALDLAHQHHVLRLARQLAHERGLAVIVVLH------DLNLAARYADRIVLLHQGRLVA 221
Query: 1312 FDTPGRLLEDK 1322
TP +L +
Sbjct: 222 DGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 19/185 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
++ DL YG+ VL I+ G+ G +G G+GK+T ++ + LI+P G I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLF-EGTIRCNL---DPLEEHSDREIWEALDKSQL 1212
D S + R+G + + P + T R NL L + I E LD L
Sbjct: 59 FD--GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL 116
Query: 1213 GDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLI 1272
D +K++ +S+G +Q + + ALL +L+LDE T +D +
Sbjct: 117 KDS---AKKKVKG--------FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165
Query: 1273 QKIIR 1277
+++I
Sbjct: 166 RELIL 170
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 8e-14
Identities = 73/279 (26%), Positives = 121/279 (43%), Gaps = 63/279 (22%)
Query: 1076 GEAPPVIEDSRPPSSWPENGTIELIDLKVRY--------GENLPLV-LHGITCAFPGGKK 1126
G+ PP+ ED+ +E+ DL+V + L + GI+ G+
Sbjct: 264 GDPPPLPEDAPV--------LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315
Query: 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LRSRLGIIPQDPN- 1182
+G+VG +GSGKSTL AL RLI G I D DI + + LR R+ ++ QDP
Sbjct: 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374
Query: 1183 -----------LFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
+ EG D+ + EAL++ L R + P
Sbjct: 375 SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR-----YP----- 424
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD------CTV 1285
+S GQRQ +++ RAL+ + +++LDE T+++D + +Q + +D +
Sbjct: 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQAQVLDLLRDLQQKHGLSY 480
Query: 1286 CTIAHRIPTVID--SDLVLVLSDGRVAE-------FDTP 1315
I+H + V+ V+V+ DG++ E F P
Sbjct: 481 LFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFANP 518
|
Length = 534 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-14
Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 29/244 (11%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN---IDISTIGLHD 1169
L I+ G+ + ++G +G+GKSTL++ + L P GRI ++ D+S + + D
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 1170 LRSRLGIIPQDPNLFE----------GTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGK 1219
++G + Q LF G P E + E L QL +
Sbjct: 77 --RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT- 1278
+L S GQRQ V+L RAL + ++L+LDE ++D +++ +R
Sbjct: 135 PAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 1279 -EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSR 1336
+ T + H ++ +D V+VL+ GR+ + P + + +S F+ +
Sbjct: 184 HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNV 243
Query: 1337 SSGI 1340
G
Sbjct: 244 LPGE 247
|
Length = 345 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 51/238 (21%), Positives = 96/238 (40%), Gaps = 55/238 (23%)
Query: 1097 IELIDLKVRY----GENLPLVLH---GITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE 1149
+E+ +LK + G + G++ + G+ +G+VG +G GKSTL + + L E
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1150 PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDK 1209
P G I+ + DI+ + +E + E L+K
Sbjct: 65 PTSGEILFEGKDITKL-----------------------------SKEERRERVLELLEK 95
Query: 1210 SQLGDIVRGK-DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
L + + +L GQRQ + + RAL +++V DE +++D +
Sbjct: 96 VGLPEEFLYRYPHELSG-----------GQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1269 D----NLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321
NL++ ++ E T I+H + V SD + V+ G++ E + +
Sbjct: 145 QAQILNLLKD-LQEELG-LTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 65/241 (26%), Positives = 124/241 (51%), Gaps = 24/241 (9%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ ++ R+G L + P G + ++G +GSGKSTL++ + L +P GRI
Sbjct: 1 IEIANISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PLEEHSDREIWEALDKSQLGD 1214
++ D + + D ++G + Q LF+ T+R N+ LE R+ +A K+++
Sbjct: 59 LNGQDATRVHARD--RKIGFVFQHYALFKHLTVRDNIAFGLEI---RKHPKAKIKARV-- 111
Query: 1215 IVRGKDQKLETPVLEN-GDNW----SVGQRQLVSLGRALLKQARILVLDEATASVDTATD 1269
++ LE LE GD + S GQRQ V+L RAL + ++L+LDE ++D
Sbjct: 112 -----EELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVR 166
Query: 1270 NLIQKIIRTEFKDCTVCT--IAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
++ +R + V T + H ++ +D ++V+S+G++ + +P + + ++ F
Sbjct: 167 KELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
Query: 1327 L 1327
+
Sbjct: 227 V 227
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
I L +L + YG+ +L ++ G++IG+VGR G+GKSTL++ L +EP G +
Sbjct: 3 MITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNLFEG--TIRCNLDPLEEHSD--REIWEALDKSQ 1211
GL R+G + Q+P L + ++ E + E+ EA
Sbjct: 61 TRPK------GL-----RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1212 LGDIVRGK--------------DQKLETPVLENGDNW--------SVGQRQLVSLGRALL 1249
D + + E +L G S G R+ V+L RALL
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1250 KQARILVLDEAT 1261
++ +L+LDE T
Sbjct: 170 EEPDLLLLDEPT 181
|
Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 1e-13
Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 32/261 (12%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA--C 1152
G I + L+V YG N VL ++ G+ + ++G++G GK+TL++A+ ++ A
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1153 GRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF-----EGTIRCNLDPLEEHS---DREIW 1204
GRI I + D++ H + L ++ Q+ LF E + L + +
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
+AL LGD +L S G +Q +++ RA+ + +L+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1265 DTAT-DNLIQKIIR--TEFKDCTVCTIAH-RIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
D N+ ++I E + T+ + H + + +D ++ DGR+A P L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 1321 DKSSMFLKLVTEYSSRSSGIP 1341
+ F E+ ++ +P
Sbjct: 229 APADGF---AAEFLGAANILP 246
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 26/238 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ DL RY + L G++ + P G K ++G G+GKSTL+ L + P GR+
Sbjct: 5 IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIWEAL 1207
+ +++ +RS++G++ QDP+ +F T+ N+ ++ +R + EAL
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
VR D + + P + S GQ++ V++ L ++VLDE A +D
Sbjct: 124 ------KAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 1268 TDNLIQKII-RTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV-AEFDTPGRLLEDK 1322
+ +I+ R + TV H + + +D V+VL +GRV AE D LL D+
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK--SLLTDE 228
|
Length = 274 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 40/240 (16%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGE 503
AI+ N +Y S + G+ +K+ + A+ G G GKS+LL L E
Sbjct: 2 KFAIETVNLRV-YY--GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE 58
Query: 504 IPKISGEVRLCGTAAYVSQSAWI----------QSGN------IEENILFGSPMDK-AKY 546
++ GEVRL G Y I Q N I +N+ G ++ K
Sbjct: 59 EARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKS 118
Query: 547 KKVIHAC---SLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
KK + +LKK D+ + D NLSGGQ+QR+ +ARAL I L+D+P
Sbjct: 119 KKELDERVEWALKKAALWDEVKDR--LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 604 FSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-----ADFILVLKEGRIIQAGK 658
+ +D G+ +E + T++ VTH PA +D++ L G++I+ G
Sbjct: 177 TANIDP-VGTAKIEELLFELKKEYTIVLVTHS----PAQAARVSDYVAFLYLGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSL---LSCIL------- 501
I++EN + YP + P L I++ + +G + + G GSGKS+L L+ +L
Sbjct: 2 IRLENVSYS-YPDGT-PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 502 -------GEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSP---MDKAKYKKVIH 551
G+ K+ G +L G ++ ++ +EE++ FG + + +K +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
+ LE + H LSGGQ Q V LA L + + + D+ S +D +
Sbjct: 119 RALAEIGLEKYRHRSPK-------TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 612 GSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
G + + KT++++TH +E L AD I+V+ G+I+ G+ +++L
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 13/216 (6%)
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171
L++ G+ P G G++G GSGKSTL++ L + P G + + +D+ +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 1172 SRLGIIPQD----PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPV 1227
R+ ++ QD L T+R ++ L R +W A D +V + E
Sbjct: 75 RRVALVEQDSDTAVPL---TVR-DVVALGRIPHRSLW-AGDSPHDAAVVDRALARTELSH 129
Query: 1228 LENGD--NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTV 1285
L + D S G+RQ V + RAL ++ ++L+LDE T +D ++R
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189
Query: 1286 CTIAHRIPTVIDS--DLVLVLSDGRVAEFDTPGRLL 1319
A + S D V+VL GRV P +L
Sbjct: 190 VVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPAC-- 1152
+ +L + YGE L+ IT + P + ++G +G GKSTL++ R+ + P C
Sbjct: 7 LSTKNLNLWYGEKH--ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 1153 -GRIIIDNIDISTIGLH--DLRSRLGIIPQDPNLFEGTIRCNL--DPLEEHSDRE----- 1202
G I+ + +I G LR ++G++ Q PN F +I N+ P H ++
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGP-RIHGEKNKKTLD 123
Query: 1203 --IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
+ ++L + L D V+ +L L + S GQ+Q + + R L ++++DE
Sbjct: 124 TIVEKSLKGAALWDEVK---DRLHDSAL----SLSGGQQQRLCIARTLAVNPEVILMDEP 176
Query: 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
+++D I+ +I K+ TV + H + SD + G++ EFD ++
Sbjct: 177 CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236
Query: 1320 ED 1321
E+
Sbjct: 237 EN 238
|
Length = 253 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 2e-13
Identities = 73/232 (31%), Positives = 103/232 (44%), Gaps = 26/232 (11%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN- 1159
DL RY + VL G+ F G+VG G GKSTL L L+ P G ++
Sbjct: 6 DLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1160 -IDISTIGLHDLRSRLGIIPQDPN--LFEGTIRC-------NLDPLEEHSDREIWEALDK 1209
+D S GL LR ++ + QDP +F I NL E R + EAL
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEAL-- 121
Query: 1210 SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-T 1268
L D + Q ++ S GQ++ V++ AL+ QAR L+LDE TA +D A
Sbjct: 122 -TLVDAQHFRHQPIQC--------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 1269 DNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
+I I R + V +H I + + SD V VL G++ PG +
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
Length = 271 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-13
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 33/209 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYV-SQSAWIQS 528
+S+ V +G A+ G G+GKS+L+ + G SGE+R+ G + S I+
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 529 G--------------NIEENILFGSP------MDKAKYKKVIHACSLKKDLELFSHGDQT 568
G + ENI+ G +D+ + + I S + L +
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD---A 136
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--N 626
+ D LS G++QRV++ +ALY+ A + +LD+P + + ELF+ I+ LA
Sbjct: 137 KVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEG 190
Query: 627 KTVIFVTHQV-EFLPAADFILVLKEGRII 654
KT+IF+TH++ E + AD + VL+ G+++
Sbjct: 191 KTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 48/209 (22%)
Query: 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIIID---------NIDISTIGLHDLRSRLGII 1177
GI G +G+GKSTL++ + L +P G I+++ I++ + ++G++
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP-----QQRKIGLV 80
Query: 1178 PQDPNLFEG-TIRCNLD-PLEEHSDREIW----EALDKSQLGDIVRGKDQKLETPVLENG 1231
Q LF +R NL L+ +RE E LD L ++ +L
Sbjct: 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQL-------- 132
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
S G++Q V+L RAL Q +L+LDE +++D A + ++ K+
Sbjct: 133 ---SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-------LN 182
Query: 1292 IPTVIDS----------DLVLVLSDGRVA 1310
IP + + D ++V+ DGR+
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR-----LCGTAAYVSQSA 524
L I+++++ G V + G GSGK++LL+ I G G ++ L G +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 525 WIQSGNI------------EENILFG-------SPMD-KAKYKKVIHACSLKKDLELFSH 564
G I +N+ S + + + + ++ A L L+ + H
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH 140
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
NLSGGQKQRV +ARAL + L D+P +A+D+ +G ++ + +M L
Sbjct: 141 -----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE--LMQKL 187
Query: 625 A---NKTVIFVTHQVEFLPAADFILVLKEGRI 653
A T++ VTH L AD I+ +++G++
Sbjct: 188 AREQGCTILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 4e-13
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
M I + + W + L S V G A+ G+ GSGKS+L ++G +
Sbjct: 2 MQQAGIVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59
Query: 507 ISGEVRLCGTA----------AYVSQSA---WIQSGNIEENILFGS-------PMDKAKY 546
SG++ + G AYV QS W +E+ ++ G K +
Sbjct: 60 ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 547 KKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSA 606
++++ A + D+ F H IG+ LSGGQK+RV LARA+ Q + LLD+PF+
Sbjct: 120 RQIVTAALARVDMVEFRHRQ---IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTG 172
Query: 607 VDAHTGSELFKEYIMTALANKTVIFVTHQV----EFLPAADFILVLKEGRIIQAG 657
VD T + + KT++ TH + EF D+ +++K G ++ +G
Sbjct: 173 VDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF---CDYTVMVK-GTVLASG 223
|
Length = 272 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 27/184 (14%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
R SG+S + G + V G GSGK++LL + G P ++G V L G
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF------ 66
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFS--HGDQTI-----------IGDR 573
Q +I +L+ K S+ ++L + H D+ + DR
Sbjct: 67 QRDSIARGLLYLGHAPGIK-----TTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR 121
Query: 574 GIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIF 631
+ LS GQ++RV LAR L +++LD+P +A+D G F E + A V+
Sbjct: 122 PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVL 180
Query: 632 VTHQ 635
THQ
Sbjct: 181 TTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-13
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 39/230 (16%)
Query: 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-----------------AYVSQSA 524
A+ G GSGK++L+ I G GE+ L G YV Q A
Sbjct: 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 525 WI-QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583
+ ++ N+ +G + +++ S ++ +EL G ++G LSGG+KQ
Sbjct: 85 RLFPHLSVRGNLRYGMKRARPSERRI----SFERVIELL--GIGHLLGRLPGRLSGGEKQ 138
Query: 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--MTALANKTVIFVTHQV-EFLP 640
RV + RAL + L+D+P +A+D E+ Y+ + A +++V+H + E L
Sbjct: 139 RVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP-YLERLHAEFGIPILYVSHSLQEVLR 197
Query: 641 AADFILVLKEGRIIQAGKYDDLL-----------QAGTDFNALVSAHHEA 679
AD ++VL++GR+ AG ++ G+ +V+ H +
Sbjct: 198 LADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAEHDQH 247
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 31/230 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+L G++ G+ + I+G G+GKSTL++AL + P G + ++ + +++ +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1173 RLGIIPQD-----PNLFEGTIRCNLDPL----EEHSDREIWE-ALDKSQLGDIVRGKDQK 1222
++PQ+ P + ++ P E D I AL + L G +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL----SGLAGR 131
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLK------QARILVLDEATASVDTATDNLIQKII 1276
+ L S G++Q V L R L + R L LDE T+++D A + ++
Sbjct: 132 -DYRTL------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1277 RTEFKD--CTVCTIAHRIP-TVIDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323
R + V + H + +D +++L GRV +P +L D++
Sbjct: 185 R-QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
L ++ P G++IG++GR G+GKSTL++ L + P G + + S +GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1173 RLGIIPQDPNL-------FEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLET 1225
G +P L G + L E D +I E ++ S+LGD ++
Sbjct: 93 -GGF---NPELTGRENIYLNGRLL-GLSRKE--IDEKIDEIIEFSELGD-------FIDL 138
Query: 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC-T 1284
PV +S G + ++ A + IL++DE A D A Q+ +R K T
Sbjct: 139 PVK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194
Query: 1285 VCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
V ++H ++ D LVL G++
Sbjct: 195 VILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 36/257 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--------I 1148
IE+ + YGE + +T + I+G +G GK+TL++++ R+ +
Sbjct: 4 IEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 1149 EPACGRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHS------ 1199
E G+I DI + + + R ++G++ Q P F +I N+ H
Sbjct: 62 E---GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 1200 -DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
DR + E+L K+ L D V+ +L + G S GQ+Q + + RAL + +++LD
Sbjct: 119 LDRIVEESLKKAALWDEVK---SELN----KPGTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 1259 EATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF-DTPG 1316
E T+++D I+K++ ++ T+ + H I I +D + + G + E+ T
Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
Query: 1317 RLLEDKSSMFLKLVTEY 1333
+ K+ KL EY
Sbjct: 232 IVERPKN----KLTEEY 244
|
Length = 250 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 6e-13
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%)
Query: 1111 PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG-LHD 1169
L L + G+ + I+GR GSGKST+ + + L+ P+ G++ +D +D S L D
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82
Query: 1170 LRSRLGIIPQDP-NLFEGTI--------RCNLDPLEEHSDREIWEALDKSQLGDIVRGKD 1220
+R++ G++ Q+P N TI NL E + E+L K V +
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKK------VGMYE 136
Query: 1221 QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF 1280
+ P L +G GQ+Q V++ L + ++ DE TA +D + + I+
Sbjct: 137 YRRHAPHLLSG-----GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN 191
Query: 1281 KD--CTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
K T+ I H + +++D ++V+ G+V TP + ++ M
Sbjct: 192 KKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMM 238
|
Length = 280 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVG---SGKSSLLSCILGEIPKISGEVRLCGTAAYVSQS 523
+ L IS+ V +G + G +G +GK++ + ILG I SGE+ G + +
Sbjct: 13 KRVLDDISLHVKKG---EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE 69
Query: 524 AWIQSGN-IEENILFG--SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI-NLSG 579
A + G IE + + + + + K+ E+ + + S
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL 129
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTHQV- 636
G KQR+ +A AL + D+ +LD+P + +D EL +E I+ +L + TV+ +H +
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELIL-SLRDQGITVLISSHLLS 187
Query: 637 EFLPAADFILVLKEGRII 654
E AD I ++ +G++I
Sbjct: 188 EIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-13
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 14/199 (7%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+L ++ + P GK ++G TGSGKSTL+Q+L E + GR+ + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
+ +PQ + T+R N+ +E + +A+ SQL + LET + E G
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLI-QKIIRTEFKDCTVCTIAHR 1291
N S GQ+ VSL RA+ + +LD+ +++D + ++ T H+
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841
Query: 1292 IPTVIDSDLVLVLSDGRVA 1310
+ V +D V+ L DGRV
Sbjct: 842 VHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 8e-13
Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 1110 LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD 1169
L L + + A G+ I+G +GSGKST+++ L RLIEP G+++ID +DI+ I +
Sbjct: 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAE 99
Query: 1170 LR-----------SRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDK-SQLGDIVR 1217
LR ++P L L + RE +ALD Q+G
Sbjct: 100 LREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE--KALDALRQVG---- 153
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
LE D S G RQ V L RAL IL++DEA +++D +IR
Sbjct: 154 -----LENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD--------PLIR 200
Query: 1278 TEFKD----------CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
TE +D T+ I+H + + D + ++ +G V + TP +L + ++ +
Sbjct: 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
Query: 1327 LK 1328
++
Sbjct: 261 VR 262
|
Length = 400 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 8e-13
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 38/253 (15%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IEPAC--GRI 1155
DL V YG++ L G++ P ++G +G GKST ++ L R+ I+ A G +
Sbjct: 50 DLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV 107
Query: 1156 IIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLD--PLEEHSDREIWEALDKSQ 1211
+D DI + L +LR R+G++ Q PN F +IR N+ P +H D ++
Sbjct: 108 ELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGD------INTGL 160
Query: 1212 LGDIVRGKDQKLETPVLEN---------------GDN---WSVGQRQLVSLGRALLKQAR 1253
L ++ D+ E ++E DN S GQ+Q + + R L
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220
Query: 1254 ILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTV--IDSDLVLVLSDGRVAE 1311
++++DE +++D + I+ +I ++ TV + H + I + L+ G + E
Sbjct: 221 VILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE 280
Query: 1312 FDTPGRLLEDKSS 1324
+D ++ E+ S
Sbjct: 281 YDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 9e-13
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 44/216 (20%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL----RSRLGIIPQDPNLF 1184
I+G +GSGKSTL++ + RLIEP G+++ID DI+ + +L R ++ ++ Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1185 -EGTIRCNLD-PLE-EHSDREI-----WEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236
T+ N+ LE + R EAL+ L +L S
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL-----------SG 163
Query: 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC------TVCTIAH 1290
G +Q V L RAL IL++DEA +A D LI++ ++ E T+ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1291 ------RIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
R+ D + ++ DGR+ + TP +L
Sbjct: 220 DLDEALRL-----GDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 69/245 (28%), Positives = 106/245 (43%), Gaps = 46/245 (18%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--------- 517
R L G+S+ + G +A+ G G+GKS+LL + GE+ SGEV L G
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL 73
Query: 518 ----AYVSQSAWIQ-SGNIEENILFG-----SPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
A + Q++ + ++E + G S + + +++ DL + D
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQ------DADIYLLDDPFSAVD---AHTGSELFKE 618
LSGG++QRVQLAR L Q LD+P SA+D H L ++
Sbjct: 134 R-------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 619 YIMTALANKTVIFVTHQVEFLPA--ADFILVLKEGRIIQAGKYDDLLQAGT-----DFNA 671
A V+ V H + L A AD I++L +GR+I +G D+L T +
Sbjct: 187 L---AREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADI 242
Query: 672 LVSAH 676
V H
Sbjct: 243 RVGRH 247
|
Length = 259 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-12
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 32/214 (14%)
Query: 474 SMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT----------------- 516
S+ ++ G + G+ GSGKS+++ + I G+V + G
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 517 AAYVSQS-AWIQSGNIEENILFGSPMD----KAKYKKVIHACSLKKDLELFSHGDQTIIG 571
A V QS A + + +N FG + + + +K + A + LE ++H
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPD--- 163
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKTVI 630
LSGG +QRV LARAL + DI L+D+ FSA+D +E+ E + + A +T++
Sbjct: 164 ----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 631 FVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLL 663
F++H + E + D I +++ G ++Q G D++L
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL-----IEPACGRII 1156
L YG+ LH I+ F + ++G +G GKST ++ L R+ G I+
Sbjct: 12 LSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 1157 IDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTI--------RCNLDPLEEHSDREIWEA 1206
+D +I + + +LR R+G++ Q PN F +I R N + + + +
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
L + L D V KD+ + E+ S GQ+Q + + RAL + +L++DE +++D
Sbjct: 130 LRHAALWDEV--KDR-----LHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 1267 ATDNLIQKIIRTEFKDCTVCTIAH 1290
I+++I T+ + H
Sbjct: 183 IATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 16/184 (8%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ +L GE + + G++ G+ + + G G GK+TL++ L L+ P G +
Sbjct: 1 LAARNLACSRGERM--LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD---PLEEHSDREIWEALDKSQLG 1213
+ ++ R+ L + E + NL + + R I +AL L
Sbjct: 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT 118
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
+ P S GQ++ ++L R L +A + +LDE T ++D A L+
Sbjct: 119 GFE-------DLPA----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA 167
Query: 1274 KIIR 1277
++R
Sbjct: 168 GLLR 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 39/235 (16%)
Query: 450 VAIQIENAEFCWYPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI 507
++I+ EN ++ + P + L IS +++ G VA+ G GSGKS+L+ +
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 508 SGEVRLCG---TAAYVSQS------------AWIQSGNIEENIL---------FGSPMDK 543
SG + + G T +++ + ++ E +L FG D+
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 544 AKYK--KVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLD 601
AK K K + L +DL I LSGGQ +RV +A + + +I LD
Sbjct: 121 AKEKALKWLKKVGLSEDL----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 602 DPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQ 655
+P + +D E+ + + A TVI VTH ++ + AD +LVL+ G++I+
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 14/193 (7%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL 1183
G+ + I+G +G+GKSTL+ + IEPA G I ++ D S GL + + ++ Q+ NL
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN--DQSHTGLAPYQRPVSMLFQENNL 81
Query: 1184 FEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVR--GKDQKLETPVLENGDNWSVGQRQ 1240
F T+R N+ L H ++ A + ++ D + G L+ L S GQRQ
Sbjct: 82 FAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDAAQQVGIADYLDR--LPE--QLSGGQRQ 135
Query: 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT--EFKDCTVCTIAHRIPTVIDS 1298
V+L R L++ IL+LDE +++D + +++ + T+ + H +
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195
Query: 1299 -DLVLVLSDGRVA 1310
+ V+S G++
Sbjct: 196 ASQIAVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 64/265 (24%), Positives = 115/265 (43%), Gaps = 37/265 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ + R+ + ++ + G+ ++G G+GKSTL++ LF L +P G I
Sbjct: 5 LEMRGITKRFPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 1157 IDNIDISTIGLHD-LRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDI 1215
+D ++ D +R +G++ Q L L E I L+ S+ G I
Sbjct: 63 VDGKEVRIKSPRDAIRLGIGMVHQHFMLVP-----TLTVAEN-----IILGLEPSKGGLI 112
Query: 1216 VRGKDQKLETPVLENGDNW-------------SVGQRQLVSLGRALLKQARILVLDEATA 1262
R + + + E + + SVG++Q V + +AL + AR+L+LDE TA
Sbjct: 113 DRRQARAR---IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTA 169
Query: 1263 SV-DTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE-FDTPGRLL 1319
+ D L + + R + T+ I H++ V+ +D V VL G+V D
Sbjct: 170 VLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETT 229
Query: 1320 EDKSS--MF---LKLVTEYSSRSSG 1339
E++ + M + L + G
Sbjct: 230 EEELAELMVGREVVLRVVKPPSTPG 254
|
Length = 501 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 31/234 (13%)
Query: 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID 1161
L V YG +L+ ++ + P GK ++G G GKSTL++ RL+ P G + + +
Sbjct: 8 LTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP 65
Query: 1162 ISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL-----DP-------LEEHSDREIWEALDK 1209
IS + L RL ++PQ EG L P L + + +A+++
Sbjct: 66 ISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ 125
Query: 1210 SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD 1269
+++ + D++L + S GQRQ L L + +++LDE T +D
Sbjct: 126 TRINHLA---DRRLT--------DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174
Query: 1270 NLIQKIIR---TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
+ +++R T+ K TV T+ H + D ++VL++G V TP ++
Sbjct: 175 VELMRLMRELNTQGK--TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L IS ++ +G RV + G G+GKS+LL I G SG+V++ G A +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL--------- 93
Query: 530 NIEENILFG---SPMDKAKYKKVIHACS------LKKDLELFSHGDQTIIGDRGI-NLSG 579
IE F + + + +I + ++ F+ I D+ + S
Sbjct: 94 -IELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI--DQPVKTYSS 150
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTALANKTVIFVTHQV 636
G R+ + A + + DI LLD+ + DA E E + NKT++ V+H +
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV---EKNKTIVLVSHDL 207
Query: 637 EFLP-AADFILVLKEGRIIQAGKYDDLLQA 665
+ D + L+ G+I G ++++ A
Sbjct: 208 GAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 28/227 (12%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG----LHD 1169
+H + F GK IVG+TGSGKSTLIQ + L++P G + +D+I I+ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1170 LRSRLGIIPQDP--NLFEGTIRCNLD--------PLEEHSDREIWEALDKSQLGDIVRGK 1219
+R R+G++ Q P LFE T+ + L+E + A L D+ +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY----AHR--LLMDLGFSR 136
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT- 1278
D ++P +G GQ + +++ L I+VLDE TA +D + + +++++
Sbjct: 137 DVMSQSPFQMSG-----GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 1279 -EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323
++ T+ ++H + V +D V+V+ +G + +P L +DK
Sbjct: 192 QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 64/241 (26%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 1094 NGTIELIDLKVRYGENLPL-VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
N +E+ +L +Y + + L+G++ + G+ + I+G+ GSGKST + + L E
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 1153 GRIIIDNIDISTIGLHDLRSRLGIIPQDP-NLFEG-TIRCNLDPLEEHSD---REIWEAL 1207
G++ ID ++ + +LR ++G++ Q+P N F G T+ ++ E+ E+ + +
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
D++ L V D K P +G GQ+Q V++ + + I++LDE+T+ +D
Sbjct: 122 DEALLA--VNMLDFKTREPARLSG-----GQKQRVAVAGIIALRPEIIILDESTSMLDPT 174
Query: 1268 TDNLIQKIIRTEFKD---CTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSS 1324
I ++I E K+ TV +I H + SD +LV+ G + + P L
Sbjct: 175 GRQEIMRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSED 233
Query: 1325 M 1325
M
Sbjct: 234 M 234
|
Length = 277 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+E+ DL RYGE+ VL G++ G I I+G +GSGKST ++ + L +P+ G I
Sbjct: 6 ALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1156 IIDNIDISTIG-------------LHDLRSRLGIIPQDPNLF------EGTIRCNLDPL- 1195
++ +I L LR+RLG++ Q NL+ E I + L
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 1196 -EEHSDREIWEA-LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253
+ E E L K + ++ P +G GQ+Q V++ RAL +
Sbjct: 124 VSKAEAIERAEKYLAKVGIA------EKADAYPAHLSG-----GQQQRVAIARALAMEPE 172
Query: 1254 ILVLDEATASVDTATDNLIQKIIRT---EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
+++ DE T+++D + K+++ E + T+ + H + D S V+ L G++
Sbjct: 173 VMLFDEPTSALDPELVGEVLKVMQDLAEEGR--TMVVVTHEMGFARDVSSHVIFLHQGKI 230
Query: 1310 AEFDTPGRLLEDKSSMFLK 1328
E P ++ + S LK
Sbjct: 231 EEEGPPEQVFGNPQSPRLK 249
|
Length = 256 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-12
Identities = 109/501 (21%), Positives = 200/501 (39%), Gaps = 42/501 (8%)
Query: 827 FGSSWFIFVRAVLVATFGLAAAQKLFVKMLRS-----VFRAPMSFFDSTPAGRILNRVSI 881
F +F+ + L++ GL + F+ LRS + P+ + + R+L ++
Sbjct: 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTS 113
Query: 882 DQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSR 941
D + RL I +G + ++ ++ LL + V +W MA
Sbjct: 114 DVRNISFAF-SRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVY 172
Query: 942 ELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDC------FARPFFCS 995
+ + + + + + + G + + ++ NLY+ D R
Sbjct: 173 KHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFH 232
Query: 996 LAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLN---LNARLSRWI 1052
L A+ W + LL F + L + + +A T L L L +
Sbjct: 233 LLAVNWS--NIMLLGLIGLVFWLALSLGWASTN-------VAATIVLVLLFLRTPLLSAV 283
Query: 1053 LSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPL 1112
L ++ +I + AP D P ++P+ T+EL +++ Y +N
Sbjct: 284 GILPTLLTAQVAFNKIAKLE----LAPY-KADFPRPQAFPDWKTLELRNVRFAYQDN-AF 337
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+ I G+ + ++G GSGKSTL L L +P G I++D +S L D R
Sbjct: 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK 397
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
+ D +LF+ L P + S + I + L + +L D + L
Sbjct: 398 LFSAVFSDYHLFDQL----LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKL---- 449
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC--TVCTIAH 1290
S GQ++ ++L ALL++ ILVLDE A D A +++ K+ T+ I+H
Sbjct: 450 --STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
Query: 1291 RIPTVIDSDLVLVLSDGRVAE 1311
I +D +L + +G+++E
Sbjct: 508 DDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I+ E + + P+S + L I ++V +G A+ G GSGKS+LL + G + G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 510 EVRLCG-TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL--------KKDLE 560
+V + + S+ I+ + ++F P + + V+ + K+ E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 561 LFSHGDQTIIG-------DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
+ ++G LSGGQ +RV +A L + ++ +LD+P + +D
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181
Query: 614 ELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
E+ + + + +TV+ VTH ++ + AD++ +L++G II G D+ Q
Sbjct: 182 EMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (167), Expect = 2e-12
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG-----------RIIIDNID 1161
VL ++ FP ++G TGSGK+T ++ L R+ + G R I + D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1162 ISTIGLHDLRSRLGIIPQDPNLFEGTIRCN---------LDPLEEHSDREIWEA-LDKSQ 1211
+ + R R+G++ Q PN F +I N L P +E R + +A L +
Sbjct: 96 VL-----EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEF--RGVAQARLTEVG 148
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
L D V KD+ ++P +G GQ+QL+ L R L +L+LDE T+++D T
Sbjct: 149 LWDAV--KDRLSDSPFRLSG-----GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
I++ IR+ TV + H + SD + DGR+ E
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242
|
Length = 276 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-12
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 520 VSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLELFSHGDQTIIGDRGIN 576
VSQ + + +I ENI FG + A + V AC ++ + +E + T +G G +
Sbjct: 1301 VSQEPMLFNMSIYENIKFGK--EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKTVIFVTHQ 635
LSGGQKQR+ +ARAL ++ I LLD+ S++D+++ + K + + A+KT+I + H+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
Query: 636 VEFLPAADFILVL----KEGRIIQA-GKYDDLLQA 665
+ + +D I+V + G +QA G +++LL
Sbjct: 1419 IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453
|
Length = 1466 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDI----STIGLHDLRSRLGIIPQ 1179
G + +VG TGSGKSTL+Q L++P+ G I I I L LR ++ ++ Q
Sbjct: 33 GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ 92
Query: 1180 DP--NLFEGTI-------RCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
P LFE T+ N E+ + + + L K L + + K +P +
Sbjct: 93 FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC-----TV 1285
G GQ + V++ + + IL LDE A +D + ++ FKD TV
Sbjct: 148 G-----GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL----FKDYQKAGHTV 198
Query: 1286 CTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ H + V + +D VLVL G++ + +P + DK
Sbjct: 199 ILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP---KISGEVRLCGT---------- 516
L+ ++ + +G V + G G GKS+LLS ++G + +GE+ L
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 517 -AAYVSQSAWI-QSGNIEENILFGSPMD---KAKYKKVIHACSLKKDLELFSHGDQTIIG 571
+ Q A + ++ +N+LF P A+ + +A + L+ H D
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNAR-RNAANAALERSGLDGAFHQDPA--- 133
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTV 629
LSGGQ+ RV L RAL LLD+PFS +D + F++++ + + A
Sbjct: 134 ----TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ-FRQWVFSEVRAAGIPT 188
Query: 630 IFVTHQVEFLPA 641
+ VTH ++ +PA
Sbjct: 189 VQVTHDLQDVPA 200
|
Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCG--------- 515
+ +S + + ++ G + + G G GK+++L I G E P SG + L G
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVPAE 84
Query: 516 -----TAAYVSQS-AWIQSGNIEENILFGSPMDKAKY----KKVIHACSLKKDLELFSHG 565
T V QS A + EN+ FG M K +V+ A + + LE F
Sbjct: 85 NRHVNT---VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-LEEF--- 137
Query: 566 DQTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
R LSGGQ+QRV +ARA+ + LLD+ SA+D ++ E + AL
Sbjct: 138 -----AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKAL 190
Query: 625 ANK---TVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
K T +FVTH Q E L +D I+V+++GRI Q G
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 53/242 (21%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS-RLGIIPQDPN 1182
G+ + I+G GSGKSTL + L +IEP G I+I++ + G + RS R+ +I QDPN
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIRMIFQDPN 97
Query: 1183 -----------LFEGTIRCNLDPLEEHSDREIWEALDKSQLG---DIVRGKDQKLETPVL 1228
+ + +R N D E ++I+E L +G D L
Sbjct: 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL--RMVGLLPDHANYYPHML----- 150
Query: 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA--------TDNLIQKI-IRTE 1279
+ GQ+Q V+L RAL+ + +I++ DEA AS+D + L +K I
Sbjct: 151 ------APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK---------SSMFLKLV 1330
+ + I H SD VLV+ +G V E + +L S F + +
Sbjct: 205 YVTQHIGMIKHI------SDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHFGEAL 258
Query: 1331 TE 1332
T
Sbjct: 259 TA 260
|
Length = 267 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 35/244 (14%)
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKIS 508
++IQ+ C+Y + L I++ G + + G G+GKSSLL + L E+P+ S
Sbjct: 1 MSIQLNGIN-CFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-S 56
Query: 509 GEVRLCGTAAYVSQSAWIQSG--------------------NIEENILFGSPMDKAKYKK 548
G + + G S++ ++ ++EN L +P +
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQEN-LIEAPC---RVLG 112
Query: 549 VIHACSLKKDLELFSHGDQTIIGDR-GINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
+ +L + +L DR ++LSGGQ+QRV +ARAL + + L D+P +A+
Sbjct: 113 LSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 608 DAHTGSELFKEYIMTALA--NKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLLQ 664
D +++ I+ LA T + VTH+VE A ++ ++ G I++ G +
Sbjct: 173 DPEITAQIVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230
Query: 665 AGTD 668
T+
Sbjct: 231 PQTE 234
|
Length = 242 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 4e-12
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 35/228 (15%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
V+ ++ G+ +G++G G+GK+T + ++ G IIID+ DIS + LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1173 RLGI--IPQDPNLFEG-----------TIRCNLDPLEEHSDR--EIWEALDKSQLGDIVR 1217
R GI +PQ+ ++F IR +L E+ DR E+ E L D +
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSA-EQREDRANELMEEFHIEHLRDSM- 134
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
G + S G+R+ V + RAL + ++LDE A VD + I++II
Sbjct: 135 -------------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181
Query: 1278 TEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322
+D V H + + + ++S G + TP +L+D+
Sbjct: 182 -HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 51/222 (22%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK---IS 508
++I++ + L G+++ + +G A+ G GSGKS+L I+G PK
Sbjct: 1 LEIKDL---HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTE 56
Query: 509 GEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAK--------YKKVIHACSLKKDLE 560
GE+ G E+I P ++A+ Y I L
Sbjct: 57 GEILFKG-----------------EDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL- 98
Query: 561 LFSHGDQTIIGDRGIN--LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
R +N SGG+K+R ++ + L + D+ +LD+P S +D L E
Sbjct: 99 ------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRLVAE 145
Query: 619 YIMTAL-ANKTVIFVTHQVEFL--PAADFILVLKEGRIIQAG 657
I K+V+ +TH L D + VL +GRI+++G
Sbjct: 146 VINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---- 517
YP+ + L GI++ + G V + G G+GKS+LL I E SG +R+ G
Sbjct: 10 YPNGT-AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL 68
Query: 518 -----AYVSQS--------AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSH 564
Y+ + + N+ EN+ F + +++ +L SH
Sbjct: 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
+ + + LSGG++QRV +ARA+ I + D+P +D T E+
Sbjct: 129 KHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184
Query: 625 ANKTVIFVTH 634
A TV+ TH
Sbjct: 185 AGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 5e-12
Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 40/257 (15%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
+ +IDL RYGE+ VL G++ G I I+G +GSGKST ++ + L +P+ G
Sbjct: 3 ENKLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 60
Query: 1154 RIIIDNIDISTI-------------GLHDLRSRLGIIPQDPNLF------EGTIRCNLDP 1194
I+++ I+ + L LR+RL ++ Q NL+ E + +
Sbjct: 61 SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 120
Query: 1195 L----EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250
L +E +R + + L K + + +GK PV +G GQ+Q VS+ RAL
Sbjct: 121 LGLSKQEARERAV-KYLAKVGIDERAQGK-----YPVHLSG-----GQQQRVSIARALAM 169
Query: 1251 QARILVLDEATASVDTATDNLIQKIIRT---EFKDCTVCTIAHRIPTVIDSDLVLVLSDG 1307
+ +L+ DE T+++D + +I++ E K V T + S V+ L G
Sbjct: 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH-VIFLHQG 228
Query: 1308 RVAEFDTPGRLLEDKSS 1324
++ E P +L + S
Sbjct: 229 KIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 44/230 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA----- 524
L G++ V G +VA+ G GSGKS++L ++ P G++++ G Y
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 525 ----------------WIQSGN------IEENILFGSPMDKAKYKKVIHACSLKKDLELF 562
QS N + +N+ +P+ + A + K+ +EL
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE-APV---LVLGMARAEAEKRAMELL 131
Query: 563 SHGDQTIIGDRG----INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
D + D+ LSGGQ+QRV +ARAL + L D+ SA+D E+
Sbjct: 132 ---DMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN- 187
Query: 619 YIMTALANK---TVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLLQ 664
++ LA++ T++ VTH++ F AD + +GRI++ GK D++ +
Sbjct: 188 -VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 29/187 (15%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI 1160
+L GE + ++ G+ + I G G+GK+TL++ L L+ P G +
Sbjct: 7 NLSCERGERT--LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGE 64
Query: 1161 DISTI------GLHDLRSRLGIIPQDPNLFEGTIRCNL----DPLEEHSDREIWEALDKS 1210
I + L L + GI E T NL + IWEAL +
Sbjct: 65 PIQNVRESYHQALLYLGHQPGIKT------ELTALENLHFWQRFHGSGNAATIWEALAQV 118
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
L + + PV S GQ++ V+L R L A + +LDE ++D
Sbjct: 119 GLAGL-------EDLPV----GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
Query: 1271 LIQKIIR 1277
L+ ++
Sbjct: 168 LLTALMA 174
|
Length = 209 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 5e-12
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 36/238 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--------I 1148
I++ +L + YGE L ++ P ++G +G GKST I+ L R+ I
Sbjct: 13 IKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 1149 EPACGRIIIDNIDISTIGLH--DLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEA 1206
E G++ I+ DI + +LR +G++ Q PN F +I N+ + R
Sbjct: 71 E---GKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNV----AYGPR--IHG 121
Query: 1207 LDKSQLGDIVRGK----------DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
+K L +V +L++P L + S GQ+Q + + R L + +I++
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPAL----SLSGGQQQRLCIARTLAVKPKIIL 177
Query: 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
DE T+++D + I+ +I KD T+ + H + SD G + EF
Sbjct: 178 FDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 6e-12
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 41/208 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI--- 526
L +S +V RG R+ + G G+GKS+LL + G P SG V + G + + +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSLLGL 91
Query: 527 -------QSGNIEENILF-----GSPMDKAKYKKVIHACSLKKDL-ELFSHGDQTIIGDR 573
+G ENI G + + + + I + EL D +
Sbjct: 92 GGGFNPELTG--RENIYLNGRLLG--LSRKEIDEKIDEI---IEFSELGDFIDLPV---- 140
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG---SELFKEYIMTALANKTVI 630
S G K R+ A A + DI L+D+ + DA +E + KTVI
Sbjct: 141 -KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG---KTVI 196
Query: 631 FVTHQVEFLPA-ADFILVLKEGRIIQAG 657
V+H + D LVL++G+I G
Sbjct: 197 LVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 32/247 (12%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+IE+ ++ R+G + L ++ P G+ + ++G +GSGK+TL++ + L P G I
Sbjct: 2 SIEVRNVSKRFG-DFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 1156 IIDNIDISTIGLHDLRSR-LGIIPQDPNLFEG-TIRCNL-----------DPLEEHSDRE 1202
+ D + ++ R +G + Q LF T+ N+ P E +
Sbjct: 60 LFGGEDATD---VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+ E L QL + +L S GQRQ V+L RAL + ++L+LDE
Sbjct: 117 VHELLKLVQLDWLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFG 165
Query: 1263 SVDTATDNLIQKIIRTEFKDCTVCTI--AHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
++D +++ +R + V T+ H ++ +D V+V++ GR+ + TP +
Sbjct: 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225
Query: 1320 EDKSSMF 1326
+ +S F
Sbjct: 226 DHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L G+S+ + GM + G G+GK++L+ + P SG +R+ G Q Q
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG------QDVLKQPQ 68
Query: 530 NIEENILFGSPMDKAKYKK------VIHACSLK---------------KDLELFSHGDQT 568
+ I + P + Y + + LK + + L +
Sbjct: 69 KLRRRIGY-LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK 127
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
I LSGG ++RV +A+AL D I ++D+P + +D F+ + ++
Sbjct: 128 IGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRI 181
Query: 629 VIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
VI TH VE + + + + VL +G+++ G
Sbjct: 182 VILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 461 WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCG 515
WY + L I++ + + A+ G G GKS+LL C L +I+G++ G
Sbjct: 15 WY--GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72
Query: 516 TAAYVSQSAWIQ---------------SGNIEENILFGSPMDKAKYKKVIHAC---SLKK 557
S + + +I EN+ +G + K KK + SLK
Sbjct: 73 ENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKG 132
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
D+ + D ++LSGGQ+QR+ +AR L + ++ L+D+P SA+D +++ +
Sbjct: 133 AALWDEVKDR--LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI-E 189
Query: 618 EYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGK 658
+ I TVI VTH ++ +D+ + G++I+ K
Sbjct: 190 DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231
|
Length = 253 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 7e-12
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 47/226 (20%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVS 521
YP + L GI+ K ++G VA+ G G+GKS+L G + SGEV + G
Sbjct: 11 YPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD 69
Query: 522 QSAWIQ-----------------SGNIEENILFGS-----PMDKAKYKKVIHACSLKK-D 558
+ + ++ + +EE++ FG ++ + K+V A LK
Sbjct: 70 KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVE-KRVKEA--LKAVG 126
Query: 559 LELFS----HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+E F H +LSGGQK+RV +A L +I +LD+P S +D S+
Sbjct: 127 MEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 615 LFKEYIMTALANK--TVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
+ K ++ L + T+I TH V+ +P AD + V+ +G+II+ G
Sbjct: 176 IMK--LLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 7e-12
Identities = 67/204 (32%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525
R L+ + + + G VAV G G GKS+LL + G +GE+ L GTA
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPL------ 76
Query: 526 IQSGNIEENILFGSPMDKAKYKKVIHACSL-------KKDLE-LFSHGDQTIIGDRGINL 577
+ E+ L +KKVI L L+ L + G + L
Sbjct: 77 --AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAAL 134
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE-------LFKEYIMTALANKTVI 630
SGGQKQRV LARAL + LLD+P A+DA T E L++++ TV+
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH------GFTVL 188
Query: 631 FVTHQV-EFLPAADFILVLKEGRI 653
VTH V E + AD +L+++EG+I
Sbjct: 189 LVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------- 516
+R IS+ V RG A+ G G GK++LL I G+I GE+ G
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR 78
Query: 517 --AAYVSQSAWIQSG------NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
S QSG N+ +N+ + ++H+ + K LE
Sbjct: 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMK-LE-------- 129
Query: 569 IIGDRGI------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK--EYI 620
+G RG LSGG +R LARA+ + D+ + D+PF D T L K +
Sbjct: 130 AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL 189
Query: 621 MTALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
+AL T + V+H V E L AD ++ + +I+ G LQA D
Sbjct: 190 NSALG-VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA-LQANPD 236
|
Length = 269 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG--EIPKISGEVRLCGTA-AYVSQSAW 525
L G+S+ + +G VA+ G GSGKS+LL +LG + P SGEV G + + +S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNGQSLSKLSSNER 77
Query: 526 IQSGNIE-----------------ENILFGSPMDKAKYKKVIHACSL-KKDLELFSHGDQ 567
+ N + EN+ + K K V A + LE +
Sbjct: 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHR 134
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--- 624
I R LSGG++QRV +ARAL + L D+P +D + +F +M L
Sbjct: 135 --INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD--LMLELNRE 190
Query: 625 ANKTVIFVTHQVEFLPAADFILVLKEGRI 653
N + + VTH +E D +L +K+G++
Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 1097 IELIDLKVRY--GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
++ +L RY G+ VL G++ + G+ + IVG +GSGKSTL+ L L P G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 1155 IIIDNIDISTIG---LHDLRSR-LGIIPQDPNLF-EGTIRCNLD-PL------EEHSDRE 1202
++ + +S + LR++ LG I Q +L + T N+ PL + +
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
+E L+K L + + +L S G+RQ V++ RAL+ Q +++ DE T
Sbjct: 122 AYEMLEKVGLEHRINHRPSEL-----------SGGERQRVAIARALVNQPSLVLADEPTG 170
Query: 1263 SVDTATD----NLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
++D +L+ ++ R V T H + D VL + DG++
Sbjct: 171 NLDNNNAKIIFDLMLELNRELNTSFLVVT--HDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 27/210 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR---LIEPA-- 1151
+ +L + YGEN L I P + ++G +G GKSTL++ L R LIE
Sbjct: 4 FNIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKI 61
Query: 1152 CGRIIIDNIDI-STIGLHDLRSRLGIIPQDPNLFEGTIRCNL----------DPLEEHSD 1200
G++ +D DI I + DLR ++G++ Q PN F +I N+ D ++ D
Sbjct: 62 TGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKD--KKVLD 119
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
+ +L + L D V KD +L++ S GQ+Q + + R + + ++++DE
Sbjct: 120 EVVERSLRGAALWDEV--KD-RLKSHAF----GLSGGQQQRLCIARTIAMEPDVILMDEP 172
Query: 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
T+++D + I++++ K+ T+ + H
Sbjct: 173 TSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-12
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 36/210 (17%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYV-SQSAWIQSG-- 529
IS V G V + G+VG+G+S L+ + G + +G+V L G + S I++G
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 530 ---------------NIEENILFGSPMDKAKYKKVIHACSLKKDLELF--------SHGD 566
++ +NI + + +I+ ++ + F +
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
Q I+ NLSGG +Q+ L R L +D + LLD+P +D E++ ++ LA
Sbjct: 392 QLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN--VIYELAA 444
Query: 627 K--TVIFVTHQV-EFLPAADFILVLKEGRI 653
+ V+FV+ + E L AD I+V++EGRI
Sbjct: 445 QGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA--------YVS 521
L G+++ + +G +++ G G GKS+LL+ I G SG V L G V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 522 QS----AWIQSGNIEENILFG-----SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
Q+ W+ + ENI + K++ + ++ ++ + L G
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIV-----EEHIALV--GLTEAADK 110
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-TVIF 631
R LSGG KQRV +ARAL + LLD+PF A+DA T L +E + ++ TV+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 632 VTHQV-EFLPAADFILVLKEG 651
VTH V E L +D +++L G
Sbjct: 171 VTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 9e-12
Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 35/274 (12%)
Query: 411 DLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTL 470
L +A+ +S ++ + +A +P M+ VAI + + + +
Sbjct: 1 LLTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY---GDKAVV 57
Query: 471 SGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------AAYVSQS 523
+G+S V G + G G+GKS++ ILG +G++ + G A
Sbjct: 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117
Query: 524 AWIQSGNIE------ENIL-FGS--PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
Q N++ EN+L FG M + + VI SL + L S D R
Sbjct: 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFARLESKADA-----RV 170
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVT 633
+LSGG K+R+ LARAL D + +LD+P + +D H L E + + LA KT++ T
Sbjct: 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTT 229
Query: 634 HQVEFLPAA----DFILVLKEGRIIQAGKYDDLL 663
H F+ A D + VL+ GR I G+ L+
Sbjct: 230 H---FMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 52/257 (20%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
M+N+ I+++N F + + TL+ +S V +G +++ G GSGKS+ + I G +
Sbjct: 1 MSNI-IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA 59
Query: 507 ISGEVRLCGTA-------------AYVSQSAWIQ--SGNIEENILFG-----SPMDKAKY 546
SG++ + G V Q+ Q +E+++ FG P ++ K
Sbjct: 60 ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK- 118
Query: 547 KKVIHACSLKKDLELFSHGDQTIIGDRG-INLSGGQKQRVQLARALYQDADIYLLDDPFS 605
++V A LEL D +R LSGGQKQRV +A A+ I +LD+ S
Sbjct: 119 ERVNEA------LELVGMQD---FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169
Query: 606 AVDAHTGSELFK-------EYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQA-- 656
+D EL K +Y M TVI +TH ++ + +D +LV+K G++
Sbjct: 170 MLDPEGRLELIKTIKGIRDDYQM------TVISITHDLDEVALSDRVLVMKNGQVESTST 223
Query: 657 -----GKYDDLLQAGTD 668
+ +DLLQ G D
Sbjct: 224 PRELFSRGNDLLQLGLD 240
|
Length = 279 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 43/193 (22%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
R G+S ++ G + V G G GK++LL + G + SGEVR GTA +
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP- 71
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHACSLKKDL----------ELFSHGDQTI------I 570
NIL+ H LK +L + +TI +
Sbjct: 72 -----HRNILYLG-----------HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAV 115
Query: 571 GDRGIN------LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
G G LS GQ++R+ LAR A +++LD+P +A+D G L ++ A
Sbjct: 116 GLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAG-LLRAH 173
Query: 625 ANK--TVIFVTHQ 635
+ V+ THQ
Sbjct: 174 LARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 26/240 (10%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
N +++EN F + S L+G+S + +G V++ G GSGKS+ I G +
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 509 GEVRLCGTAAYVSQSAW----------------IQSGNIEENILFGSPMDKAKYKKVIHA 552
G+V++ G +++ W +E+++ FG +++I
Sbjct: 62 GKVKIDGEL-LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK- 119
Query: 553 CSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG 612
+ D L + LSGGQKQRV +A + +I +LD+ S +D
Sbjct: 120 ---RVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 613 SELFKEYIMTALANK---TVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDF 669
E+ + ++ + K TV+ +TH ++ ++D ILV+K G II+ +L D
Sbjct: 177 QEIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDM 234
|
Length = 277 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 25/219 (11%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL---GEIP--KISGEVRLCGTAAYVSQSA 524
L GIS+ + A+ G G GKS+ L C+ +I KI+GE++ G Y S+
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 525 WIQSGNIEENILFG--SPMDKAKYKKVIHACSLK--KDLELFSHGDQTIIGDRGI----- 575
++ E ++F +P + Y V + + KD EL + + I
Sbjct: 80 LVELRK-EVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK 138
Query: 576 -NL-------SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
NL SGGQ+QR+ +ARAL + LLD+P SA+D + SE+ +E +M
Sbjct: 139 DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLMELKHQY 197
Query: 628 TVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665
T I VTH ++ +D L G +I+AG +++ A
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 32/241 (13%)
Query: 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LG 502
+ ++ +N WY + L+ I++ + A+ G G GKS+ L C+ L
Sbjct: 1 MKIKMESKNLNL-WY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 503 EIPKISGEVRLCGTAAY---------------VSQSAWIQSGNIEENILFGSPMDKAKYK 547
KI GEV L G Y V Q +I +N+ +G + K K
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 548 KV---IHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPF 604
K I +LKK D + + LSGGQ+QR+ +AR + D+ L+D+P
Sbjct: 118 KELDKIVEWALKKAALWDEVKDD--LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 605 SAVDAHTGSELFKEYIMTALANK-TVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDL 662
SA+D S L E +M L + T++ VTH ++ +D+ G +I+ K + +
Sbjct: 176 SALDPI--STLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
Query: 663 L 663
Sbjct: 234 F 234
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 42/222 (18%)
Query: 1092 PENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR---LI 1148
+N I L ++ + YG + + C P GK ++G +G GKST++++L R LI
Sbjct: 9 SKNIIISLQNVTISYGTFE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLI 66
Query: 1149 EPAC---GRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTI--------RCN---- 1191
E C GR++ D D+ + ++R R+G++ Q PN F +I R N
Sbjct: 67 E-GCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTG 125
Query: 1192 -LDPLEEHSDRE--IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248
+D L E S R+ +W+ KD KL E+G + S GQ+Q + + R +
Sbjct: 126 DMDELVERSLRKAAVWDEC-----------KD-KLN----ESGYSLSGGQQQRLCIARTI 169
Query: 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
+ ++++DE +++D + I++ + K+ T+ + H
Sbjct: 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---- 517
YP L G++ +RG +A+ G G+GKS+LL + G + SG V + G
Sbjct: 1 YPGGPE-VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYS 59
Query: 518 -----------AYVSQSAWIQ--SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSH 564
V Q Q + ++++++ FG P++ + + +++ L
Sbjct: 60 RKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVER-RVREALTAVGA 117
Query: 565 GDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--M 621
+ +R + LSGG+K+RV +A A+ D+ LLD+P + +D G E + +
Sbjct: 118 SG---LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRL 173
Query: 622 TALANKTVIFVTHQVE 637
A TV+ TH V+
Sbjct: 174 RA-EGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 48/225 (21%)
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA---CGRIIIDNIDISTIGLH 1168
+L+ ++ G+ + I+G +GSGK+TL+ A+ +E G+I+ +
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---D 77
Query: 1169 DLRSRLGIIPQDPNLFEG-TIR-----CNLDPLEEHSD----REIWEALDKSQLGD-IVR 1217
+ + + QD L G T+R + L S ++ E + L +
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
G K S G+R+ VS+ LL ++L+LDE T+ +D+ T + +
Sbjct: 138 GNLVK----------GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 1278 TEFKDCTVCTIAHRIPTVIDS------------DLVLVLSDGRVA 1310
+A R VI + D +L+LS G +
Sbjct: 188 ---------QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----TAAYVSQ 522
+ G++ KV G G G+GK++ + + + SG R+ G V +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 523 SAWI--QSGNIEENI-----------LFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
S I Q +++E++ L+G P D+A+ + ++ LELF G+
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER-------AEELLELFELGEA-- 117
Query: 570 IGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--AN 626
DR + SGG ++R+ +A +L D+ LD+P + +D T + +YI AL
Sbjct: 118 -ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-WDYIR-ALKEEG 174
Query: 627 KTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
T++ TH +E D I ++ GRII G
Sbjct: 175 VTILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 32/188 (17%)
Query: 1101 DLKVRYGENLPLVLHGIT-CAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159
DL G + + G++ G + + G GSGK+TL++ + L+ PA G I +D
Sbjct: 7 DLACVRGGRV--LFSGLSFTLAAGEALV-LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG 63
Query: 1160 IDISTIGLHDLRSR---LGIIPQD---PNLFEGTIRCNLD---PLEEHSDREIWEALDKS 1210
DI D+ LG ++ P L T+ NL+ + +I AL+
Sbjct: 64 GDI---DDPDVAEACHYLG--HRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAV 115
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
L + P S GQ++ V+L R L+ I +LDE TA++D A
Sbjct: 116 GLAPL-------AHLP----FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164
Query: 1271 LIQKIIRT 1278
L ++IR
Sbjct: 165 LFAELIRA 172
|
Length = 207 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFV 632
++LSGGQ+QRV +ARAL + ++ L D+P SA+D E+ + IM LA KT++ V
Sbjct: 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKTMVVV 208
Query: 633 THQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663
TH++ F + ++ L +G+I + G + L
Sbjct: 209 THEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 30/232 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L +S + +G V G G+GKS+ + I G +P SG V++CG V Q+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--VLQNPKEVQR 75
Query: 530 NI----EENILFGS--------------PMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
NI E N L+ M K+ + L H IG
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK---IG 132
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
LS G +QRV LA+AL D + +LD+P + +D + E+ + I +KT+I
Sbjct: 133 Q----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIIL 187
Query: 632 VTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEA 682
TH ++ + A D ++++ +G+I+ K D+L A + E I+
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKK-QVIEVEFEEQIDL 238
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 27/190 (14%)
Query: 1083 EDSRPPSSWPENGTIELIDLKVRYGEN------LPLVLHGITCAFPGGKKIGIVGRTGSG 1136
+ W T+EL ++ Y +N + L + G+ + ++G GSG
Sbjct: 312 PRPQAFPDWQ---TLELRNVTFAYQDNGFSVGPINLTIKR-------GELLFLIGGNGSG 361
Query: 1137 KSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE 1196
KSTL L L +P G I++D ++ D R + D +LF+ L P
Sbjct: 362 KSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL----LGPEG 417
Query: 1197 EHSDREIWEA-LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
+ ++ + E L++ ++ + +D ++ L S GQ++ ++L AL ++ IL
Sbjct: 418 KPANPALVEKWLERLKMAHKLELEDGRISNLKL------SKGQKKRLALLLALAEERDIL 471
Query: 1256 VLDEATASVD 1265
+LDE A D
Sbjct: 472 LLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 2e-11
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 23/223 (10%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC-----GRIIIDNIDISTIGL 1167
VL I FP + I+G +G GKSTL++AL R+ + G +++DN +I + L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1168 H--DLRSRLGIIPQDPNLFEGTIRCNLD--------PLEEHSDREIWEALDKSQLGDIVR 1217
+LR R+G++ Q PN F +I N+ + D + ++L ++ L D V+
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
K +G S GQ+Q + + R L + ++++DE +++D + I+++++
Sbjct: 139 DNLHK-------SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 1278 TEFKDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLL 1319
++ T+ + H + SD L G + E+ G +
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
|
Length = 251 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 27/232 (11%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
A+++ F + +R L +S V G VA+ G G+GKS+L S + G+
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 511 VRLCG-------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACS-------LK 556
+ + G AA Q ++ ++ S +Y +H S +
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDL---SVRQNLRYHAALHGLSRAEARARIA 114
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
+ L ++ D+ L+GG ++RV++ARAL + LLD+P +D + + +
Sbjct: 115 ELLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 617 KEYIMTALANK---TVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
+ ALA +V++ TH V+ + A D ++VL GR++ G +L A
Sbjct: 173 AH--VRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 24/190 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAYVSQSA 524
L IS++ ++ A+ G G GKS+ L C+ L ++ GE+ L G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 525 WI----------QSGN-----IEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
+ Q N I EN+ +G ++ K K + A +++ L + D+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL-AERVERSLRHAALWDEVK 140
Query: 570 --IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+ + + LSGGQ+QR+ +ARAL + ++ L+D+P SA+D ++ +E I A
Sbjct: 141 DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHELKARY 199
Query: 628 TVIFVTHQVE 637
T+I VTH ++
Sbjct: 200 TIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ D+ R+G VL G+ + G+K+ ++G +GSGKST+++ L L G+I
Sbjct: 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1157 IDN-------------IDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREI 1203
++ + L +R+++G++ Q NLF + LD + E +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPH--KTVLDNVTEAPVLVL 116
Query: 1204 W----EALDKS-QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
EA ++ +L D+V D+ P +G GQ+Q V++ RAL + ++++ D
Sbjct: 117 GMARAEAEKRAMELLDMVGLADKADHMPAQLSG-----GQQQRVAIARALAMRPKVMLFD 171
Query: 1259 EATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315
E T+++D + +IR D T+ + H + + +D V GR+ E P
Sbjct: 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231
Query: 1316 GRLL----EDKSSMFLKLVTE 1332
+ E+++ FL V
Sbjct: 232 DEIFRQPKEERTREFLSKVIA 252
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
MT +Q+ + +Y + + L+ +S+ A+ G GSGKS+LL I +
Sbjct: 1 MTEPILQVSDLSV-YY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSI-NRMND 56
Query: 507 ISGEVRLCGTAAYVSQSAW----------------IQSGN-----IEENILFGSPMDKAK 545
++ EV + G+ Y + + Q N I EN+++G + K
Sbjct: 57 LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIK 116
Query: 546 YKKVIHACSLKKDLELFSHGDQT--IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
K+V+ +++K L+ S D+ + D + LSGGQ+QRV +AR L I LLD+P
Sbjct: 117 DKQVLDE-AVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEP 175
Query: 604 FSAVDAHTGSELFKEYIMTALANK-TVIFVTHQVE 637
SA+D + ++ E + L + T++ VT ++
Sbjct: 176 TSALDPISAGKI--EETLLGLKDDYTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 47/202 (23%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI-PKISGE 510
I++EN R L +S ++ G R+ + G G+GKSSL L + P SG
Sbjct: 1 IELENLSLA--TPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFR-ALAGLWPWGSGR 57
Query: 511 VRLCGTAA--YVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
+ + ++ Q ++ G + E +++ P D
Sbjct: 58 IGMPEGEDLLFLPQRPYLPLGTLREQLIY--PWDDV------------------------ 91
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK- 627
LSGG++QR+ AR L LD+ SA+D SE + + L
Sbjct: 92 --------LSGGEQQRLAFARLLLHKPKFVFLDEATSALD--EESE---DRLYQLLKELG 138
Query: 628 -TVIFVTHQVEFLPAADFILVL 648
TVI V H+ D +L L
Sbjct: 139 ITVISVGHRPSLWKFHDRVLDL 160
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 58/260 (22%)
Query: 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I + E + + R L +++ + G VA+ G GSGKS+LL + G + SG
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 510 EVRLCGTAAYVSQSAWIQSG---------------------------NIEENILFGSPMD 542
V + I +G +E++I FG PM+
Sbjct: 63 TVTIGERV--------ITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG-PMN 113
Query: 543 --------KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
K K +++I L ++L S + LSGGQ +RV +A L +
Sbjct: 114 FGVSEEDAKQKAREMIELVGLPEELLARSPFE----------LSGGQMRRVAIAGVLAME 163
Query: 595 ADIYLLDDPFSAVDAHTGSELFKE-YIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGR 652
++ +LD+P + +D E+ + Y + T + VTH +E AD I+V+ +G
Sbjct: 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223
Query: 653 IIQAGKYDDLLQAGTDFNAL 672
+ G ++ + A+
Sbjct: 224 VFLQGTPREIFADPDELEAI 243
|
Length = 290 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-11
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 46/227 (20%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR-- 1171
++ + G+ I+G +GSGKSTL++ L RLIEP G I++D DI+ + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1172 --SRLGIIPQDPNLF-EGTIRCNLD--------PLEEHSDREIWEALDKSQLGDIVRGKD 1220
++ ++ Q L T+ N+ P E +R + EAL+ L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL-EALELVGLEGYADKYP 162
Query: 1221 QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF 1280
+L S G +Q V L RAL IL++DEA +A D LI+ ++ E
Sbjct: 163 NEL-----------SGGMQQRVGLARALANDPDILLMDEAF----SALDPLIRTEMQDEL 207
Query: 1281 KDC------TVCTIAH------RIPTVIDSDLVLVLSDGRVAEFDTP 1315
+ T+ I H RI D + ++ DG + + TP
Sbjct: 208 LELQAKLKKTIVFITHDLDEALRI-----GDRIAIMKDGEIVQVGTP 249
|
Length = 386 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 37/224 (16%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------- 515
R + G+ + G + G GSGKS+LL + G + +G V L G
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA 72
Query: 516 -------------TAAYVSQSAWIQSGNIEENILFG--SPMDKAKYKKVIHACSLKKDLE 560
TA ++ + G I L+ SP D A V+ + +L
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAA----VVDRALARTELS 128
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
+ D + LSGG++QRV +ARAL Q+ + LLD+P + +D E
Sbjct: 129 HLADRDMS-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 621 MTALANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLL 663
A TV+ H + D ++VL GR++ AG ++L
Sbjct: 182 ELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 36/250 (14%)
Query: 443 LPRGMTNVA---IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC 499
+ G+ NVA I++EN WY + L +SM++ + A+ G G GKS+ + C
Sbjct: 1 MTEGVQNVAQPQIKVENLNL-WY--GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRC 57
Query: 500 I-----LGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENI--LFGSP-------MDKAK 545
+ L + +I G+V + G Y + + +N+ +F P D
Sbjct: 58 LNRMNDLIKNCRIEGKVSIEGEDIYEPD---VDVVELRKNVGMVFQKPNPFPMSIYDNVA 114
Query: 546 YKKVIHACSLKKDLE------LFSHGDQTIIGDR----GINLSGGQKQRVQLARALYQDA 595
Y IH + KKDL+ L S DR ++LSGGQ+QR+ +AR L
Sbjct: 115 YGPRIHGAN-KKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKP 173
Query: 596 DIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRII 654
I L D+P SA+D + + + ++ IM + T++ VTH ++ +D+ G +I
Sbjct: 174 KIILFDEPTSALDPISTARI-EDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI 232
Query: 655 QAGKYDDLLQ 664
+ G+ +
Sbjct: 233 EFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 64/228 (28%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
P +++ ++ G R+A+ G G GK++LL ++GE+ SG V+ W
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK------------W- 378
Query: 527 QSGNIEENILFG-SPMDKAKYKKVIHACSLKKDLELF---------SHGDQTIIGDRGI- 575
EN G D HA + DL LF +Q + RG
Sbjct: 379 -----SENANIGYYAQD--------HAYDFENDLTLFDWMSQWRQEGDDEQAV---RGTL 422
Query: 576 ---------------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
LSGG+K R+ + + Q ++ ++D+P + +D + E +
Sbjct: 423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES-----IESL 477
Query: 621 MTALAN--KTVIFVTHQVEFLPA-ADFILVLKEGRIIQ-AGKYDDLLQ 664
AL T+IFV+H EF+ + A I+ + ++ +G Y++ L+
Sbjct: 478 NMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525
|
Length = 530 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG---- 502
M + ++ ++ F YP S +P L+ IS + RG A+ G GSGKS++ I G
Sbjct: 1 MKDNIVEFKHVSFT-YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 503 -EIPK----ISGEVRLCGTAAYVSQSAWIQSGN---------IEENILFG---SPMDKAK 545
+ P + G T + + I N + +++ FG + + +
Sbjct: 60 DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 546 YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFS 605
K++ + + + NLSGGQKQRV +A L + I +LD+ S
Sbjct: 120 MIKIVRDVLADVGMLDYIDSEPA-------NLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 606 AVDAHTGSELFKEYIMTALANK---TVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658
+D ++ K ++ L K TVI +TH ++ AD +LVL +G+++ G
Sbjct: 173 MLDPAGKEQILK--LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 25/239 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E DLK Y + L GI G+ + ++G G+GKSTL +++P G ++
Sbjct: 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 1157 IDN--IDISTIGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIWE 1205
I I L ++R +GI+ Q+P+ LF T+ NL +E ++ + E
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKE 120
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
AL + L S GQ++ V++ L + I+VLDE T+ +D
Sbjct: 121 ALKAVGMEGFENKPPHHL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 1266 TATDNLIQKIIRTEFKD-CTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ I K++ K+ T+ H + V + +D V V+SDG++ + TP + D
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-11
Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 53/236 (22%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAY----- 519
S L GI + G A+ G G+GKS+L+ I G +P SG + + G
Sbjct: 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA 81
Query: 520 ---------VSQSAWI-QSGNIEENILFGSPMDKAKYKKVIH-----ACSLKKD-----L 559
V Q + + +++ENILFG P +A +K+ C L D L
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSL 141
Query: 560 ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
E + DR Q V++ R L +D+ I +LD+P +++ LF
Sbjct: 142 E---------VADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR- 182
Query: 620 IMTALANKTV--IFVTHQV-EFLPAADFILVLKEGRIIQAGKY-----DDLLQAGT 667
+ L + V +F++H++ E AD I V+++G I +GK DD++QA T
Sbjct: 183 -IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAIT 237
|
Length = 510 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 28/191 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAY----- 519
L +SM + A+ G G GKS+ L CI L + ++ GE+ G Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 520 ----------VSQSAWIQSGNIEENILFGSPMD--KAKYKKVIHACSLKKDLELFSHGDQ 567
V Q +I +N+ +G + + + SL++ DQ
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEE-SLRRAALWDEVKDQ 173
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+ G++LSGGQ+QR+ +ARA+ D ++ L+D+P SA+D S++ E ++ LA +
Sbjct: 174 --LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI--EDLIEELAEE 229
Query: 628 -TVIFVTHQVE 637
TV+ VTH ++
Sbjct: 230 YTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 56/213 (26%), Positives = 80/213 (37%), Gaps = 54/213 (25%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP---KISGEVRLCG------ 515
S P L S V G V V G GSG S+LL + + G++ G
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77
Query: 516 ------TAAYVSQSAW-IQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
YVS+ + + E + F A K G++
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK--------GNEF 115
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
+ RGI SGG+++RV +A AL A + D+ +D+ T E+ K A KT
Sbjct: 116 V---RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 629 VIFVTHQVEFLPAA-------DFILVLKEGRII 654
FV+ A+ D +LVL EGR I
Sbjct: 171 TTFVS----LYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-11
Identities = 85/340 (25%), Positives = 152/340 (44%), Gaps = 45/340 (13%)
Query: 1018 MVLLVSFPHGAIDPSMAGL--------AVTYGLNLNARLSRWILSFCKLENKIISIERIY 1069
+ L P G +DP A L G+++ S W L +K I +E
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM-VLTSHWPEVIEDLSDKAIWLEN-- 244
Query: 1070 QYSQIPGEAPP--VIEDSRPPSSWPE--------NGTIELIDLKVRY---GENLPLVLHG 1116
+I E P V+ S E I++ ++ RY + +
Sbjct: 245 --GEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302
Query: 1117 ITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG----RIIIDNIDISTIGLHDLRS 1172
++ G+ GIVG +G+GK+TL + + ++EP G R+ + +D++ G D R
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRG 361
Query: 1173 R----LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE--ALDKSQLGDIVRGKDQKLETP 1226
R +GI+ Q+ +L+ R LD L E E+ + A K+ + + G D++
Sbjct: 362 RAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE 419
Query: 1227 VLEN-GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII---RTEFKD 1282
+L+ D S G+R V+L + L+K+ RI++LDE T ++D T + I R E +
Sbjct: 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ 479
Query: 1283 CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321
T ++H + V+D D ++ DG++ + P ++E+
Sbjct: 480 -TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 28/216 (12%)
Query: 1092 PENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-- 1149
I++ +L YG+ L I + +G +G GKSTL++ R+ E
Sbjct: 9 TAPSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY 66
Query: 1150 P---ACGRIIID--NIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD---------PL 1195
P A G I++D NI + LR+++G++ Q P F +I N+
Sbjct: 67 PEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSR 126
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
E +R W AL K+ L + V KD KL ++G + S GQ+Q + + R + + +L
Sbjct: 127 AEMDERVEW-ALTKAALWNEV--KD-KLH----QSGYSLSGGQQQRLCIARGIAIRPEVL 178
Query: 1256 VLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAH 1290
+LDE +++D + I+++I TE K D TV + H
Sbjct: 179 LLDEPCSALDPISTGRIEELI-TELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 9e-11
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E +L R+G+ ++ I+ P G++G G+GKSTL++ + ++ P G II
Sbjct: 1 LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD---PLEEHSDREIWEALDKSQL 1212
D + DL +G + + P L+E T R NL L D I E L+ L
Sbjct: 59 FDGHPWTR---KDLHK-IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL 114
Query: 1213 GDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLI 1272
+ + K ++ +S+G +Q + + ALL ++L+LDE T +D +
Sbjct: 115 TNTGKKKAKQ-----------FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL 163
Query: 1273 QKIIRT 1278
+++IR+
Sbjct: 164 RELIRS 169
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 9e-11
Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 46/195 (23%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------AYV 520
R SG+S ++ G V + G G+GK+SLL + G +GEV G Y
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 521 SQSAWI--QSG-----NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI---- 569
++ Q G EN+ F +H D+ +
Sbjct: 74 QDLLYLGHQPGIKTELTALENLRFYQR---------LHGPG----------DDEALWEAL 114
Query: 570 --IGDRGI------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIM 621
+G G LS GQ++RV LAR A +++LD+PF+A+D G + +
Sbjct: 115 AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ-GVARLEALLA 173
Query: 622 TALANK-TVIFVTHQ 635
VI THQ
Sbjct: 174 QHAEQGGMVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 20/221 (9%)
Query: 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN-- 1159
L++ + + L P + G +GSGK++LI + L P GRI ++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1160 -IDIST-IGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIV 1216
+D I L + R+G + QD LF T+R NL S R ++ L L I
Sbjct: 62 LVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL--VALLGIE 119
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT-DNLIQKI 1275
D+ T S G++Q V++GRALL +L++DE AS+D ++ +
Sbjct: 120 HLLDRYPGT--------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 1276 --IRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
+R E + + ++H + V+ +D V+VL +G+V
Sbjct: 172 ERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 37/252 (14%)
Query: 1097 IELIDLKVRYGENLP---LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
I ++ RY P L+ + + P G + I+G TGSGKSTL+Q L L++P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1154 RIIIDNIDIST----IGLHDLRSRLGIIPQDP--NLFEGTIR---C----NLDPLEEHSD 1200
+ I I+ L LR ++GI+ Q P LFE T+ C N EE +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
++ E ++ L + + + +P S GQ + V++ L + +LVLDE
Sbjct: 123 QKAREMIELVGLPEELLAR-----SPF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 1261 TASVDTATDNLIQKIIRTEF------KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
TA +D +K + F K T + H + +D ++V+ G V
Sbjct: 173 TAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
Query: 1314 TPGRLLEDKSSM 1325
TP + D +
Sbjct: 229 TPREIFADPDEL 240
|
Length = 290 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-10
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 47/250 (18%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-- 506
+ + L +S G +AV G G+GK++L++ + PK
Sbjct: 20 WKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV 79
Query: 507 -ISGEVRLCGTA----------AYVSQ-SAWIQSGNIEENILFGS--PMDKAKYKK---- 548
SG V L G AYV Q +I + + E+++F + M + KK
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRE 139
Query: 549 ----VIHACSLKKDLELFSHGDQTIIGDRGI--NLSGGQKQRVQLARALYQDADIYLLDD 602
V+ A L+K T IG G LSGG+++R+ A L D + D+
Sbjct: 140 RVDEVLQALGLRK-------CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192
Query: 603 PFSAVDAHTGSELFKEYIMTALANK--TVIFVTHQVEFLPAA------DFILVLKEGRII 654
P S +D+ + + ++ LA K T+I HQ P++ D I+++ EGR+
Sbjct: 193 PTSGLDSFMAYSVVQ--VLKGLAQKGKTIICTIHQ----PSSELFELFDKIILMAEGRVA 246
Query: 655 QAGKYDDLLQ 664
G D +
Sbjct: 247 YLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--TVIFVTH 634
LSGGQ+QRV +ARAL + L D+P A+D+H+G E+ I+ L ++ TVI VTH
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA--ILHQLRDRGHTVIIVTH 202
Query: 635 QVEFLPAADFILVLKEGRIIQ----------AGKYDDLLQAGTDFNALVSAHHEAI 680
+ A+ ++ +++G I++ AG + ++ + + VS EA+
Sbjct: 203 DPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREAL 258
|
Length = 648 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 43/238 (18%)
Query: 471 SGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP----KISGEVRLCGT---------- 516
+++ + RG +A+ G GSGKS ILG +P + SGE+ L G
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 517 -AAYVSQSAW--------IQSGNIEENILFGSPMDKAKYKKV--IHACSL---KKDLELF 562
A + Q+ + + IE G +A+ + + A L ++ L+ +
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKY 122
Query: 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-M 621
LSGG QRV +A AL + + D+P + +D + + K +
Sbjct: 123 PF-----------QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 622 TALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQAGTDFNA--LVSAH 676
L ++ +TH + + AD + V+ +GRI++ G ++ L+SAH
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS-RLGIIPQDPN 1182
G+ + I+G GSGKSTL + L +IEP G ++ID+ + G + RS R+ +I QDP+
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQDPS 97
Query: 1183 -----------LFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
+ + +R N D E +++I E L Q+G + D P +
Sbjct: 98 TSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL--RQVGLL---PDHASYYPHM--- 149
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+ GQ+Q + L RAL+ + ++++ DEA AS+D
Sbjct: 150 --LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 29/235 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI--- 526
+ IS +V G + G G+GK++ ILG + GE+ G I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 527 -------QSGNIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN 576
+E+ + + + M KA+ +K + A + LE+ +
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA--WLERLEIVGK-----KTKKIKE 130
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTH 634
LS G +Q++Q A+ + ++ +LD+PFS +D EL K+ I L T+IF +H
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFE-LKEEGATIIFSSH 188
Query: 635 Q---VEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIP 686
+ VE L D +L+LK+G+ + G +D+ ++ ++ + E +IP
Sbjct: 189 RMEHVEEL--CDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
|
Length = 300 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 77/300 (25%), Positives = 127/300 (42%), Gaps = 56/300 (18%)
Query: 452 IQIENAEFCWYPSSSRPT-LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISG 509
I++ N ++ + L+ +S+ V G V G G+GKS+L+ C+ L E P SG
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SG 60
Query: 510 EVRLCGTAAYVSQSA-----------------WIQSGNIEENI-----LFGSPMDKAKYK 547
V + G ++ + S + N+ L +P D+ K K
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120
Query: 548 KVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
+ + L L GD+ NLSGGQKQRV +ARAL + + L D+ SA+
Sbjct: 121 -------VTELLALVGLGDKH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 608 D-AHTGS--ELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663
D A T S EL KE + T++ +TH+++ + D + V+ G +I+ G ++
Sbjct: 172 DPATTQSILELLKE--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
Query: 664 QAGTDFNALVSAHHEAIEA---MDIPNHSSEDSDENLT---LDGCVIPCKKCDASGDNID 717
+ + I + + IP ED E L V P + + +G +D
Sbjct: 230 S-----HPKTPLAQKFIRSTLHLSIP----EDYQERLQATPFADSV-PMVRLEFTGQTVD 279
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+I+L + YG + L IT P G+ + ++G +G+GKS+L++ L L P G +
Sbjct: 2 SIQLNGINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1156 IIDN--IDISTI----GLHDLRSRLGIIPQD----------PNLFEGTIRCNLDPLEEHS 1199
I D S + DLR +G++ Q NL E R ++
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 1200 DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW----SVGQRQLVSLGRALLKQARIL 1255
R + L + +L D + S GQ+Q V++ RAL+ + ++L
Sbjct: 120 ARAE-KLLKRLRLKPY---------------ADRYPLHLSGGQQQRVAIARALMMEPQVL 163
Query: 1256 VLDEATASVDTATDNLIQKIIR 1277
+ DE TA++D I II+
Sbjct: 164 LFDEPTAALDPEITAQIVSIIK 185
|
Length = 242 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 32/195 (16%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------AYV 520
R S +S ++ G + + G G+GK++LL + G + +GEV G +Y
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74
Query: 521 SQSAWI--QSG-----NIEENILFGSPM----DKAKYKKVIHACSLKKDLELFSHGDQTI 569
++ Q G EN+ F + A + + L +L
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVG----- 129
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-- 627
LS GQ++RV LAR A +++LD+PF+A+D G L +M A A +
Sbjct: 130 ------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALL-TALMAAHAAQGG 181
Query: 628 TVIFVTHQVEFLPAA 642
V+ THQ + +A
Sbjct: 182 IVLLTTHQPLPIASA 196
|
Length = 209 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-10
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 32/217 (14%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK--ISGEVRLCG---TAAYVS 521
R L+G++ G +AV G GSGKS+LL+ + G I +G + T +
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK 140
Query: 522 QSAWIQSGNI-------EENILFGS----PMDKAKYKKVIHACSLKKDLELFSHGDQTII 570
++ ++ +I E ++F S P K +K++ A S+ +L L + + TII
Sbjct: 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-TKCENTII 199
Query: 571 GD---RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
G+ RGI SGG+++RV +A + + + +LD+P S +DA L A K
Sbjct: 200 GNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257
Query: 628 TVIFVTHQVEFLPAA------DFILVLKEGRIIQAGK 658
T++ HQ P++ D +LVL EGR + GK
Sbjct: 258 TIVTSMHQ----PSSRVYQMFDSVLVLSEGRCLFFGK 290
|
Length = 659 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE ++ Y LH ++ G+ + + G +G+GK+TL++ L+ + P+ G++
Sbjct: 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1157 IDNIDISTIGLHD-----LRSRLGIIPQDPNLF-EGTIRCNLD-PLE------EHSDREI 1203
I D++ L LR R+G++ QD L + T+ N+ PLE R +
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
AL + L ++L S G++Q V++ RA++ +L+ DE T +
Sbjct: 119 GAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1264 VDTAT 1268
+D
Sbjct: 168 LDPDL 172
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 1074 IPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRT 1133
+P A P+++ + ++P I LK N+ V+ I+ G+ +G+VG +
Sbjct: 268 LPEPASPLLDVEQLQVAFPIRKGI----LKRTVDHNV--VVKNISFTLRPGETLGLVGES 321
Query: 1134 GSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHDLRSRLGIIPQDPNLFEGTIRC 1190
GSGKST AL RLI + G I D + + L +R R+ ++ QDPN ++
Sbjct: 322 GSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN---SSLNP 377
Query: 1191 NLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG----------DNWSVGQRQ 1240
L+ L+ I E L Q ++Q++ + E G +S GQRQ
Sbjct: 378 RLNVLQ-----IIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432
Query: 1241 LVSLGRALLKQARILVLDEATASVD 1265
+++ RAL+ + +++LDE T+S+D
Sbjct: 433 RIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 58/257 (22%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 1086 RPPSSWPENGTIELIDLKVRYGE-------NLPLVLHGITCAFPGGKKIGIVGRTGSGKS 1138
P + +E+ DL + YGE ++ + H +T ++G +G GKS
Sbjct: 11 IAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVT---------ALIGPSGCGKS 61
Query: 1139 TLIQALFRLIE-----PACGRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCN 1191
T ++++ R+ + + G I+ + ++I S I + +LR +G++ Q PN F +I N
Sbjct: 62 TFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNN 121
Query: 1192 LDPLEEHS--------DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243
+ +++ D + E+L K+ L D V+ +L + L + S GQ+Q +
Sbjct: 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVK---DRLHSSAL----SLSGGQQQRLC 174
Query: 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVL 1302
+ R L + +L+LDE +++D ++ I+++I ++ ++ + H + + SD
Sbjct: 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTA 234
Query: 1303 VLSDGRVAEFDTPGRLL 1319
+G + E+D ++
Sbjct: 235 FFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 43/236 (18%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISG 509
+IQ+ C+Y + L I++ +G + + G G+GKSSLL + L E+P+ SG
Sbjct: 2 SIQLNGIN-CFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SG 57
Query: 510 EVRLCGTAAYVSQSAWIQSG--------------------NIEENILFGSPM-----DKA 544
+ + G S++ ++ +++N L +P K
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN-LIEAPCRVLGLSKD 116
Query: 545 KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPF 604
+ A L + L L + D+ ++LSGGQ+QRV +ARAL + + L D+P
Sbjct: 117 QALA--RAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 605 SAVDAHTGSELFKEYIMTALANK--TVIFVTHQVEFL-PAADFILVLKEGRIIQAG 657
+A+D +++ I+ LA T + VTH+VE A ++ ++ G I++ G
Sbjct: 170 AALDPEITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQ 635
LSGGQK+RV +A L +I + D+P + +D E+ + I+ A A NKTV +TH
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHT 235
Query: 636 VE-FLPAADFILVLKEGRIIQAG 657
+E L AD ++V+ +G+I++ G
Sbjct: 236 MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 54/231 (23%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSA 524
+ L IS+ G ++ V G+ G+GKS+LL + G + +GE R Y+ Q
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 525 WIQS-----GNIEE---------------NILFGSP---MDK-----AKYKKVIHAC--- 553
+ N+EE + F P MD A+ +++I A
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137
Query: 554 SLKKDLELFSH------GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
L + LE+ D + LSGG+++RV L R L D+ LLD+P + +
Sbjct: 138 DLDRKLEIAMDALRCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHL 192
Query: 608 DAHTGSEL---FKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRII 654
DA + + L +EY TV+ VTH FL A +IL L GR I
Sbjct: 193 DAESVAWLEQHLQEY------PGTVVAVTHDRYFLDNVAGWILELDRGRGI 237
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 531 IEENILFGS---PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
IE++I+FG + K + KK K +EL D++ + LSGGQK+RV L
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRA-----AKYIELVGL-DESYLQRSPFELSGGQKRRVAL 176
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVE-FLPAADFIL 646
A L + D + D+P + +D E+ + + KT+I VTH ++ L +
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 647 VLKEGRIIQAGKYDDLL 663
K+G+II+ G D+L
Sbjct: 237 FFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 40/236 (16%)
Query: 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I + NA ++ + + L+G+S+++ G V V G G+GKS+LL+ I G++ SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 510 EVRLCGT----------AAYVS---QSAWIQSG---NIEENILFG---------SPMDKA 544
++ + G A ++ Q + IEEN+ S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 545 KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPF 604
+ + S ++ L G + + DR LSGGQ+Q + L A I LLD+
Sbjct: 122 RRRS-----SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176
Query: 605 SAVDAHTGSELFK--EYIMTALANKTVIFVTHQVEFLPAADF---ILVLKEGRIIQ 655
+A+D T + + I+ T + VTH +E A D+ +++L G+I+
Sbjct: 177 AALDPKTAEFVMELTAKIVEEH-KLTTLMVTHNME--DALDYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 35/224 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----TAAYVSQSA 524
++ +S++V G V + G G+GK++L + I G SG V G +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 525 WI----------QSGNIEENILFGSPMDKAKYKKVIHACSLKKD-----------LELFS 563
I + EN+ G + ++ +K+ LE
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVG-AHARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPF---SAVDAHTGSELFKEYI 620
G+ NLS GQ++R+++ARAL + LLD+P + + +EL +E
Sbjct: 139 LGEL--ADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE-- 194
Query: 621 MTALANKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLL 663
+ T++ + H ++ + AD I+VL G +I G +++
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 48/210 (22%), Positives = 96/210 (45%), Gaps = 36/210 (17%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR---LIEP--ACGRI 1155
+L V YG L + + P + +G +G GKST+++ R LI G++
Sbjct: 15 NLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 1156 II--DNIDISTIGLHDLRSRLGIIPQDPNLFEGTI-------------RCNLDPLEEHSD 1200
N+ + ++R R+G++ Q PN F +I + ++D L E S
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS- 131
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
L ++ L D V+ K + ++G + S GQ+Q + + RA+ Q ++++DE
Sbjct: 132 ------LRQAALWDEVKDK-------LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178
Query: 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
+++D + I++++ + T+ + H
Sbjct: 179 CSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 50/201 (24%), Positives = 100/201 (49%), Gaps = 15/201 (7%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IEPACGRIII 1157
+L + YG+ L I K ++G +G GKST ++ R+ I G + I
Sbjct: 7 NLNLFYGKKQ--ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCN------LDPLEEHSDREIWEALDKSQ 1211
+ D+ + LR +G++ Q PN+F +I N L + ++ D E EAL
Sbjct: 65 EGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEE--EALVVDC 122
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
L + G ++++ + +N S GQ+Q + + RAL + ++L+LDE T+++D + +
Sbjct: 123 LQKV--GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180
Query: 1272 IQKIIRTEFKDCTVCTIAHRI 1292
I+++++ + ++ + H +
Sbjct: 181 IEELLKELSHNLSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 1103 KVRYGENLPLVLHGIT-CAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID 1161
V Y +L+ I+ G K+ I G +G GKSTL++ + LI P G ++ + D
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 70
Query: 1162 ISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGK- 1219
IST+ R ++ Q P LF T+ NL P + + + L D+ R
Sbjct: 71 ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIF----LDDLERFAL 126
Query: 1220 -DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
D L + E S G++Q +SL R L ++L+LDE T+++D + + + +II
Sbjct: 127 PDTILTKNIAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180
|
Length = 225 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 43/248 (17%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--PA---CGRI 1155
+L + YGE+ L I + I+G +G GKST I+ L R++E P+ G+I
Sbjct: 29 NLNLWYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86
Query: 1156 II--DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCN---------------LDPLEEH 1198
+ NI + + +LR+ +G++ Q PN F +I N LD + E
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEK 146
Query: 1199 SDR--EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
S R IW+ L KD +L N S GQ+Q + + R L + +++
Sbjct: 147 SLRGAAIWDEL-----------KD-RLHD----NAYGLSGGQQQRLCIARCLAIEPDVIL 190
Query: 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315
+DE T+++D + ++++++ KD ++ + H + SD +G V E+D
Sbjct: 191 MDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDT 250
Query: 1316 GRLLEDKS 1323
++ + S
Sbjct: 251 DKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 43/247 (17%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIP 505
N I +N F Y S + TL +S + +G ++ G GSGKS++ ++G E
Sbjct: 3 DKNSIIVFKNVSF-QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61
Query: 506 KISGEVRLCGTAAYVSQSAWIQSGNIEE-----NILFGSPMDK-----AKYKKVI----H 551
K SGE+ + + A I N E+ I+F +P ++ KY H
Sbjct: 62 K-SGEI-------FYNNQA-ITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH 112
Query: 552 ACSLKK----------DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLD 601
A + +++ D LSGGQKQRV +A L + + +LD
Sbjct: 113 AVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILD 167
Query: 602 DPFSAVDAHTGSELFKEYIMTALANK--TVIFVTHQVEFLPAADFILVLKEGRIIQAGKY 659
+ S +D L + + + T+I +TH + AD ++V+ +G + + G
Sbjct: 168 EATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTP 226
Query: 660 DDLLQAG 666
++
Sbjct: 227 TEIFDHA 233
|
Length = 269 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (150), Expect = 4e-10
Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 18/229 (7%)
Query: 1106 YGENLPLV---LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDI 1162
Y N P L I G ++G TGSGKSTL+Q L L++P G++ + +I +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 1163 STIG----LHDLRSRLGIIPQDP--NLFEGTIRCNL--DPLEEHSDREIWEALDKSQLGD 1214
S+ + +R ++G++ Q P LFE T+ ++ P +E E + +L
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEM 130
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
+ + ++P +G GQ + V++ L + +LVLDE TA +D + +
Sbjct: 131 VGLADEFWEKSPFELSG-----GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185
Query: 1275 IIRTEFKDC-TVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321
+ + + TV + H + V D +D V +L G + TP + ++
Sbjct: 186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 34/216 (15%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT----AAYVSQSAWIQ- 527
+S + G +A+ G GSGKS+L + G I SGE+ + Y +S I+
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 528 -------SGNIEENI--LFGSPM-------DKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
S N I + P+ + + K++ +L+ L H +
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFE--TLRMVGLLPDHANYYPH- 148
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---T 628
L+ GQKQRV LARAL I + D+ +++D S+L +M L K +
Sbjct: 149 ----MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGIS 202
Query: 629 VIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663
I+VT + + +D +LV+ EG +++ G D+L
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 4e-10
Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 45/249 (18%)
Query: 1097 IELIDLKVRYGE-------NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL-- 1147
+E +L + YGE NLP+ + IT ++G +G GKST ++ L R+
Sbjct: 5 MESKNLNLWYGEKQALNDINLPIYENKIT---------ALIGPSGCGKSTFLRCLNRMND 55
Query: 1148 ------IEPACGRIIID--NIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL--DPL-- 1195
IE G +++D NI + + +LR R+G++ Q PN F +I N+ P
Sbjct: 56 LISNVKIE---GEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH 112
Query: 1196 ----EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ 1251
++ D+ + AL K+ L D V+ +K + S GQ+Q + + R + +
Sbjct: 113 GIKDKKELDKIVEWALKKAALWDEVKDDLKK-------SALKLSGGQQQRLCIARTIAVK 165
Query: 1252 ARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310
++++DE T+++D + I+ ++ K+ T+ + H + SD G +
Sbjct: 166 PDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225
Query: 1311 EFDTPGRLL 1319
EF+ ++
Sbjct: 226 EFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPAC---GRIIIDNIDISTIGLH 1168
L GI+ + +G +G GKST ++ R+ + PA G I ID +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1169 --DLRSRLGIIPQDPNLFEGTI--------RCNLDPLEEHSDREIWEALDKSQLGDIVRG 1218
+LR +G++ Q PN F +I R N + + E L + L D V+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1219 KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT 1278
K + E+ S GQ+Q + + RA+ +L++DE +++D + ++++I
Sbjct: 139 K-------LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1279 EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313
KD T+ + H + SD G + E+D
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 39/224 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAYVSQSA 524
L I++ ++ A+ G G GKS+ L + L KI GEV L G Y S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 525 WI----------QSGN-----IEENILFGSPMDKAKYKKVIHAC---SLKKDL---ELFS 563
Q N I +N+ +G K KK + SLK E+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
++ +G LSGGQ+QR+ +ARAL + ++ L+D+P SA+D + ++ E ++
Sbjct: 139 RLKKSALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI--EELIQE 191
Query: 624 LANK-TVIFVTHQVEFLPAA---DFILVLKEGRIIQAGKYDDLL 663
L T++ VTH ++ A+ D G I++ G DL
Sbjct: 192 LKKDYTIVIVTHNMQ--QASRISDKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST---IG--- 1166
VLHGI G+ + I+G +GSGK+TL++ + L +P G I + +I I T +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1167 --LHDLRSRLGIIPQDPNLF----------EGTIRCNLDPLEEHSDREIWEALDKSQLGD 1214
+ LR +G + Q+ NLF EG + +P EE A + L
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEA------TARARELLAK 131
Query: 1215 I-VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+ + GK+ + S GQ+Q V++ RAL + +++ DE T+++D
Sbjct: 132 VGLAGKETSYPRRL-------SGGQQQRVAIARALAMRPEVILFDEPTSALD 176
|
Length = 250 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636
LSGGQ+QR LA L QD + LLD+P + +D + EL + KTV+ V H +
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198
Query: 637 -EFLPAADFILVLKEGRIIQAGKYDDLLQAG---TDFNALVSAHHEAI 680
+ D ++VL G ++ G ++++ G T F+ H E +
Sbjct: 199 NQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEIHPEPV 246
|
Length = 255 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 29/192 (15%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAY----- 519
L I++ + A+ G G GKS+LL C+ L E KI+G++ + G Y
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 520 ---------VSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTII 570
V Q +I EN+ +G K KKV+ +++ L + D+ +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWDE--V 135
Query: 571 GDR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
DR LSGGQ+QR+ +AR + + D+ L+D+P SA+D ++ E +M L
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI--EELMEELKK 193
Query: 627 K-TVIFVTHQVE 637
T++ VTH ++
Sbjct: 194 NYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 24/231 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE DL Y + L+ I P +I ++G G+GKSTL + +++P G ++
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIWEAL 1207
I I+ + ++R +G++ Q+P+ +F T+ NL EE + AL
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD-T 1266
L ++ L S G+++ V++ + + ++LVLDE TA +D
Sbjct: 123 HMLGLEELRDRVPHHL-----------SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 1267 ATDNLIQKIIR-TEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315
LI + E TV H++ V + +D + V+ GR+ + T
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222
|
Length = 277 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL---GEIP--K 506
I+IEN F Y + + ++MK+ + A+ G G GK++LL I IP +
Sbjct: 4 IEIEN--FSAY-YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 507 ISGEVRLCGTAAY---------------VSQSAWIQSGNIEENILFGSPMDKAKYKKVIH 551
+ G++ G Y V Q +I +N+ FG + K K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 552 ACSLKKDLELFSHGDQTI--IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
+++ L+ + D+ + G LSGGQ+QR+ +ARAL + ++ LLD+P SA+D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 610 HTGSELFKEYIMTALANK-TVIFVTHQV-EFLPAADFILVLKEGRIIQAG 657
+ E ++ L+ T++ VTH + + + AD+I + G +I+ G
Sbjct: 180 IATQRI--EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 41/219 (18%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164
RYGE VL+ + P G+ + +VGR+G GKSTL++ L L P+ G ++
Sbjct: 21 RYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP--- 75
Query: 1165 IGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEA-LDKSQLGDIVRGK---- 1219
L + R ++ QD L W+ +D LG ++G+
Sbjct: 76 --LAEAREDTRLMFQDARLLP------------------WKKVIDNVGLG--LKGQWRDA 113
Query: 1220 -DQKLETPVLENGDN-W----SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
Q L L + N W S GQ+Q V+L RAL+ + +L+LDE ++D T +Q
Sbjct: 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 1274 KIIRTEFKD--CTVCTIAHRIP-TVIDSDLVLVLSDGRV 1309
+I + ++ TV + H + V +D VL++ +G++
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IEPA--CGRI 1155
D+ V YGE L + P +G +G GKST ++ L R+ I+ G+I
Sbjct: 24 DVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI 81
Query: 1156 IIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLG 1213
+D DI + + +LR+R+G++ Q PN F +I N+ + R A K++L
Sbjct: 82 TLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV----AYGPRIHGLARSKAELD 137
Query: 1214 DIVRGKDQK------LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE-------- 1259
+IV +K ++ + E G S GQ+Q + + RA+ ++++DE
Sbjct: 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197
Query: 1260 ATASVDTATDNL 1271
ATA V+ D L
Sbjct: 198 ATAKVEELIDEL 209
|
Length = 267 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAYVSQSA 524
L GI + ++ A+ G G GKS+ L + L I+G V L G Y
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 525 WIQ---------------SGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLELFSHGD 566
+Q +I EN+++G + K K V+ SLK+ D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+ + ++LSGGQ+QRV +AR L D+ LLD+P SA+D + +++ E ++ L +
Sbjct: 141 H--LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI--ENMLLELRD 196
Query: 627 K-TVIFVTHQV 636
+ T+I VTH +
Sbjct: 197 QYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 57/234 (24%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
AI++ N F + ++ L G+SM++ + A+ G G GKS+ L C L + ++ E
Sbjct: 7 AIKVNNLSFYY---DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 511 VRLCGTAAYVSQSAWIQSGNIEE-----NILFGSP--MDKAKYKKVIHACSLK------- 556
VR+ G + +Q+ + + N+ +++ P + Y V + +
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 557 ---------KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
KD +L+ I ++LSGGQ+QR+ +ARAL + L+D+P +
Sbjct: 123 IDDIVESALKDADLWDEIKHK-IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
Query: 608 DAHTGSELFKEYIMTAL---ANKTVIFVTHQV-EFLPAADFILVLK--EGRIIQ 655
D ++ E ++ +L + T++ V+H + + +DF K E RI Q
Sbjct: 182 DPIASMKV--ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQ 233
|
Length = 261 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR---LIE 1149
E +E+ +L + YG+ L I+ P + +G +G GKSTL++ R L++
Sbjct: 22 EQTALEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVD 79
Query: 1150 PAC---GRIIIDNIDISTIGLH--DLRSRLGIIPQDPNLFEGTIRCNLD---PLEEHSDR 1201
C G I +D +I + +LR R+G++ Q PN F +I N+ L+ ++R
Sbjct: 80 -NCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR 138
Query: 1202 ----EIWE-ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
E E +L + L D V KD+ + EN S GQ+Q + + RA+ + +L+
Sbjct: 139 RVLDEAVERSLRGAALWDEV--KDR-----LHENAFGLSGGQQQRLVIARAIAIEPEVLL 191
Query: 1257 LDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAH 1290
LDE T+++D + I+++I TE K T+ + H
Sbjct: 192 LDEPTSALDPISTLKIEELI-TELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 7e-10
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC---ILGEIPKISGEVRLCGTAAYVSQS 523
+ L I+M++++ A+ G G GKS+ L C + +I KI G V + G +Q
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK-NQD 73
Query: 524 AWIQSGNI-----EENILFGSPMDKAKYKKVIHACSLKKDLE------------LFSHGD 566
N+ + N+ S + Y +H KD E LF
Sbjct: 74 VVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+ + LSGGQ+QR+ +ARAL + LLD+P SA+D S + +E + N
Sbjct: 134 DKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHN 191
Query: 627 KTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQ 664
++I VTH + + AD+ G +I+ G+ + +
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 7e-10
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 46/220 (20%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAAYVSQSAWIQSGNI 531
+++ + +G V + G G GK+++L + G E P G++ + G V+ + IQ +I
Sbjct: 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGED--VTHRS-IQQRDI 80
Query: 532 ---------------EENILFGSPM---DKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
EN+ +G M K + K+ + K+ LEL D DR
Sbjct: 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV-----KEALELV---DLAGFEDR 132
Query: 574 GIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH-------TGSELFKEYIMTALA 625
++ +SGGQ+QRV LARAL + L D+P S +DA+ EL +++ +T+L
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL- 191
Query: 626 NKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+VTH Q E +D ++V+ +G+I+Q G +L +
Sbjct: 192 -----YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226
|
Length = 351 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 8e-10
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 33/222 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI------------LGEI-----------PK 506
L I+M V A+ G G GKS+ L C GEI P+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 507 ISG-EVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHG 565
+ EVR+ + + + + +S I EN+ +G + K + ++ ++ L +
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKS--IFENVAYGLRIRGVKRRSILEE-RVENALRNAALW 148
Query: 566 DQTI--IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
D+ +GD NLSGGQ+QR+ +ARAL D +I L D+P SA+D + + E +++
Sbjct: 149 DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI--EELISD 206
Query: 624 LANK-TVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663
L NK T++ VTH ++ +D+ + G +I+ G D +
Sbjct: 207 LKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 9e-10
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
N I+L+ + YG+ + V++ ++ G+ G++G G+GKST+ + L +I P G
Sbjct: 2 NVAIDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG 59
Query: 1154 RI-IIDNIDISTIGLHDLRSRLGIIPQDPNL-FEGTIRCNLDPLEEH---SDREIWEALD 1208
+I ++ S L R +G++PQ NL E T+R NL + S REI +
Sbjct: 60 KITVLGEPVPSRARL--ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI- 116
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
L + R + K + V S G ++ ++L RAL+ ++L+LDE T +D
Sbjct: 117 -PSLLEFAR-LESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 1269 DNLIQKIIRT 1278
+LI + +R+
Sbjct: 171 RHLIWERLRS 180
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 1e-09
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 62/223 (27%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G + + +VR GE I +GI G G+G++ L +ALF L PA G
Sbjct: 14 GAVRDVSFEVRAGE--------I---------VGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 1155 IIIDNIDISTIGLHDLRSRLGI--IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQL 1212
I +D ++ D R GI +P+D EG +
Sbjct: 57 ITLDGKPVTRRSPRDAI-RAGIAYVPEDRKR-EGLV------------------------ 90
Query: 1213 GDIVRGKDQKLETPVLEN---GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD 1269
L+ V EN S G +Q V L R L + R+L+LDE T VD
Sbjct: 91 ----------LDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140
Query: 1270 NLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
I ++IR E D V I+ + ++ D +LV+ +GR+
Sbjct: 141 AEIYRLIR-ELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 15/199 (7%)
Query: 1084 DSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQA 1143
+ P S I+L + YG+ V++G++ G+ G++G G+GKST+ +
Sbjct: 30 KASIPGSMS-TVAIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARM 86
Query: 1144 LFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL-FEGTIRCNLDPLEEH---S 1199
+ + P G+I + + + R+R+G++PQ NL E T+R NL + S
Sbjct: 87 ILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145
Query: 1200 DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
REI EA+ S L + R + K + V + S G ++ ++L RAL+ ++L+LDE
Sbjct: 146 TREI-EAVIPSLL-EFAR-LESKADARVSD----LSGGMKRRLTLARALINDPQLLILDE 198
Query: 1260 ATASVDTATDNLIQKIIRT 1278
T +D +LI + +R+
Sbjct: 199 PTTGLDPHARHLIWERLRS 217
|
Length = 340 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 49/169 (28%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL 1183
G ++ I G +G+GKS+L +AL L GRI + L +PQ P L
Sbjct: 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMP-----------EGEDLLFLPQRPYL 75
Query: 1184 FEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242
GT+R L P W D L S G++Q +
Sbjct: 76 PLGTLREQLIYP---------W---------------DDVL-----------SGGEQQRL 100
Query: 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
+ R LL + + + LDEAT+++D +++ + ++++ TV ++ HR
Sbjct: 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 26/209 (12%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN---IDISTIGLHD 1169
VL GI G+ ++G G+GKSTL++ + ++ P G + I ++ H
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH- 84
Query: 1170 LRSRLGI--IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVR--GKDQKLET 1225
+LGI +PQ+P LF NL E ++ ++ G L++
Sbjct: 85 ---QLGIYLVPQEPLLFP-----NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS 136
Query: 1226 PV--LENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-TDNLIQKIIRTEFKD 1282
LE V RQ+V + R L++ +RIL+LDE TAS+ A T+ L +I +
Sbjct: 137 SAGSLE------VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190
Query: 1283 CTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310
+ I+H++P + +D + V+ DG +A
Sbjct: 191 VGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 42/255 (16%)
Query: 1102 LKVRYGENLP---LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
L + E + L+ I+ F K I+G +GSGKSTL+ LI+ G I +
Sbjct: 27 LYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG 86
Query: 1159 NIDISTIGLHD----------------LRSRLGIIPQDP--NLFEGTIR-------CNLD 1193
+I I + LR R+ ++ Q P LF+ TI L
Sbjct: 87 DIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALG 146
Query: 1194 PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE-NGDNWSVGQRQLVSLGRALLKQA 1252
+ + + L+K L D LE + S GQ++ V++ L Q
Sbjct: 147 VKKSEAKKLAKFYLNKMGLDD-----------SYLERSPFGLSGGQKRRVAIAGILAIQP 195
Query: 1253 RILVLDEATASVDTATDNLIQKIIRTEFKDC-TVCTIAHRIPTVID-SDLVLVLSDGRVA 1310
IL+ DE TA +D ++ + ++I + TV I H + V++ +D V+V+ G++
Sbjct: 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
Query: 1311 EFDTPGRLLEDKSSM 1325
+ TP + D+ +
Sbjct: 256 KTGTPYEIFTDQHII 270
|
Length = 320 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 33/212 (15%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPAC---GRI 1155
D+ + YG+ + + G ++G +G GK+T ++A+ R+ + P GRI
Sbjct: 9 DVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 1156 IIDNIDISTIGLHD--LRSRLGIIPQDPN------LFEGTIRC-------NLDPLEEHSD 1200
++D DI + +R R+G++ Q PN +F+ + + D L E ++
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
R +L + L D V+ +L+TP S GQ+Q + + RAL + IL++DE
Sbjct: 127 R----SLRGAALWDEVK---DRLKTP----ATGLSGGQQQRLCIARALAVEPEILLMDEP 175
Query: 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
T+++D A+ I+ ++ K T+ + H +
Sbjct: 176 TSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 48/254 (18%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
L ++ G+ + ++G +G GK+TL+ + + P+ G I ++ I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIW-EALDKSQLGDIVRG--KDQKLETPV-- 1227
G++ Q+ L W +D G +RG K Q+ E
Sbjct: 75 ERGVVFQNEALLP------------------WLNVIDNVAFGLQLRGIEKAQRREIAHQM 116
Query: 1228 -----LENGDNWSV-----GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
LE ++ + G RQ V + RAL + ++L+LDE ++D T +Q+++
Sbjct: 117 LALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176
Query: 1278 TEFKDC--TVCTIAHRI--PTVIDSDLVLVLS--DGRVAEFDTPG---RLLEDKSSMFLK 1328
+++ V I H I + + LV VLS GRV E R + S +K
Sbjct: 177 DLWQETGKQVLLITHDIEEALFLATRLV-VLSPGPGRVVERLPLDFARRYAAGEPSRAIK 235
Query: 1329 LVTEYSSRSSGIPD 1342
E+ + + D
Sbjct: 236 SDPEFIAMREEVLD 249
|
Length = 259 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 23/223 (10%)
Query: 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV-- 511
++ E + S L GI++ + +G A+ G G+GKS+L + G + SG +
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 512 -------------RLCGTAAYVSQSAWIQ--SGNIEENILFGSPMDKAKYKKVIHACSLK 556
+L + V Q Q S ++ +++ FG ++ + + +
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG-AVNLKLPEDEVRK---R 121
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
D L G + + LS GQK+RV +A L + + +LD+P + +D SE+
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 617 KEYIMTALA-NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
K + T+I TH ++ +P D + V+KEGR+I G
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 46/251 (18%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IEL ++ YG + L G++ G+ ++G +G GK+TL++ + P G I+
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD-PL------EEHSDREIWEALD 1208
+D DI+ + H + + + Q+ LF T+ N+ L + + EALD
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
QL K +L S GQ+Q V++ RAL+ + ++L+LDE A
Sbjct: 117 LVQLEGYANRKPSQL-----------SGGQQQRVAIARALVNEPKVLLLDEPLG----AL 161
Query: 1269 DNLIQKIIRTEFKD------CTVCTIAHRIPTVID-------SDLVLVLSDGRVAEFDTP 1315
D ++K ++ E K T + H D SD + V++ G++ + TP
Sbjct: 162 DLKLRKDMQLELKRLQKELGITFVFVTH------DQEEALTMSDRIAVMNKGKIQQIGTP 215
Query: 1316 GRLLEDKSSMF 1326
+ E+ ++ F
Sbjct: 216 EEIYEEPANRF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 34/236 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I + ++ YG + VL ++ P G I+G G+GKSTL+ + RL++ G I
Sbjct: 2 ITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-------------EEHSDREI 1203
ID +++++ +L +L I+ Q+ ++ R + L + R I
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHI---NSRLTVRDLVGFGRFPYSQGRLTKEDRRII 116
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
EA++ L D+ D+ L D S GQRQ + L + ++LDE +
Sbjct: 117 NEAIEYLHLEDL---SDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165
Query: 1264 VDTATDNLIQKIIRT---EFKDCTVCTIAHRIP-TVIDSDLVLVLSDGRVAEFDTP 1315
+D I KI+R E V + H I SD ++ L +G+V + +P
Sbjct: 166 LDMKHSVQIMKILRRLADELGKTIVVVL-HDINFASCYSDHIVALKNGKVVKQGSP 220
|
Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 41/220 (18%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT----- 516
YP R L +S + +G V + G G+GKS+LL I GE G++ + G
Sbjct: 11 YPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRL 69
Query: 517 -----------AAYVSQS-AWIQSGNIEENILF-----GSPMDKAKYKKVIHACSLKKDL 559
V Q + + EN+ G P + + ++V L
Sbjct: 70 KGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIR-RRVSEV------L 122
Query: 560 ELFSHGDQTIIGDRG----INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+L + + LSGG++QRV +ARA+ + L D+P +D E+
Sbjct: 123 DLVG------LKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADF-ILVLKEGRII 654
+ + TV+ TH +E + +L L++GR++
Sbjct: 177 MRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTH 634
LSGGQ+QRV +ARAL + ++ L D+P SA+D E+ K +M LA +T++ VTH
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVVTH 210
Query: 635 QVEFL-PAADFILVLKEGRIIQAGKYDDLLQA 665
++ F + ++ L +G+I + G + +
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 33/228 (14%)
Query: 1112 LVLHGITCAFPG-------------GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
L GI FPG G+ ++G G+GKSTL++ L +P G I+ID
Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 1159 NIDISTIGLHD-LRSRLGIIPQDPNLF-EGTIRCNLDPLEEHSDREIWEALDKSQLGDIV 1216
++ L + + II Q+ +L E T+ NL L + + +++ L
Sbjct: 65 GQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGI--VNRRLLNYEA 121
Query: 1217 RGKDQKL------ETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT-ATD 1269
R + + L +TP+ S+GQRQ+V + +AL + AR++ DE T+S+ +
Sbjct: 122 REQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177
Query: 1270 NLIQKIIRTEFKDCTVCT-IAHRIPTVID-SDLVLVLSDGR-VAEFDT 1314
L ++IR + V ++HR+ + D + V DGR VA FD
Sbjct: 178 QLF-RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224
|
Length = 501 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-09
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 28/213 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC--GRIIIDNIDISTIGLHDL 1170
+L+G+T G+ + ++G +GSGKSTL+ AL I+ G I+ +N + +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QI 138
Query: 1171 RSRLGIIPQDPNLF------EGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGK--DQK 1222
R G + QD L+ E + C+L L + ++ +K + + V + K
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQ-----EKILVAESVISELGLTK 193
Query: 1223 LETPVLENG--DNWSVGQRQLVSLGRALLKQARILVLDEATASVD-TATDNLIQKIIRTE 1279
E ++ N S G+R+ VS+ +L +L+LDE T+ +D TA L+ +
Sbjct: 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 1280 FKDCTVCTIAH----RIPTVIDSDLVLVLSDGR 1308
K T+ T H R+ + DS VLVLS+GR
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDS--VLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 50/215 (23%), Positives = 106/215 (49%), Gaps = 25/215 (11%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPA 1151
N ++L L V +G+N + ++ FP I+G +G GKST+++++ R+ + P+
Sbjct: 2 NNKVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS 59
Query: 1152 C---GRIIIDNIDISTIGLH--DLRSRLGIIPQDPNLFEGT---------IRCNLDPLEE 1197
G+I++D+ DI G+ +R R+G++ Q PN F + N
Sbjct: 60 ARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRS 119
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
+D + +L + L D V+ +L++ +E S GQ+Q + + R + + ++++
Sbjct: 120 EADEIVESSLKRVALWDEVK---DRLKSNAME----LSGGQQQRLCIARTIAVKPEVILM 172
Query: 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
DE +++D + I+++I + T+ + H +
Sbjct: 173 DEPASALDPISTLKIEELIEELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 34/203 (16%)
Query: 461 WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSL---LSCILGEIP--KISGEVRLCG 515
WY L I++ + A+ G G GKS+ L+ ++ +P K++GE+ G
Sbjct: 21 WY--GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78
Query: 516 TAAYVSQSAWI----------QSGN-----IEENILFGSPMDKAKYKKVIHACSLK--KD 558
+ + + Q GN I +N+ +G + K KK + K KD
Sbjct: 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD 138
Query: 559 LELFSHGDQTIIGDR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ L+ + DR ++LSGGQ+QR+ +ARAL + D+ L+D+P SA+D + +
Sbjct: 139 VALWDE-----VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRK 193
Query: 615 LFKEYIMTALANKTVIFVTHQVE 637
+ +E I+ T++ VTH ++
Sbjct: 194 I-EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 46/234 (19%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----AAYVSQSAWI 526
G+S V RG + G G+GK++ L +LG +G + LCG A + Q +
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 527 --QSGNIE------ENIL-----FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
Q N++ EN+L FG + A + ++ L + +L + D + G+
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARALVP--PLLEFAKLENKADAKV-GE- 138
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN-KTVIFV 632
LSGG K+R+ LARAL D D+ +LD+P + +D L E + + LA KT++
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLT 194
Query: 633 THQVEFLPAA----DFILVLKEGRIIQAGKYDDLLQA----------GTDFNAL 672
TH F+ A D + V++EGR I G L+++ G D AL
Sbjct: 195 TH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVAL 245
|
Length = 306 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E ++ Y L L ++ G +I IVG G+GKSTL++ L + P G +
Sbjct: 322 LEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDR--EIWEALDKSQLGD 1214
+ ++G Q + + + LEE S+ + E ++ LG
Sbjct: 381 VGE-----------TVKIGYFDQHRD----ELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425
Query: 1215 I-VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
G+DQ E PV S G++ + L + LL+ +L+LDE T +D + ++
Sbjct: 426 FGFTGEDQ--EKPVGVL----SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479
Query: 1274 KIIRTEFKDCTVCTIAH 1290
+ + +F+ TV ++H
Sbjct: 480 EALL-DFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I+IEN + + + L ++++++ G V + G GSGKS+L+ + G + SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 510 EVRLCGT---------------AAYVSQSAWIQ--SGNIEENILFGSPM-----DKAKYK 547
++ + G V Q Q IE++I FG P+ ++
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIEN 121
Query: 548 KVIHACSLKK-DLELFSHGDQTIIGDRG-INLSGGQKQRVQLARALYQDADIYLLDDPFS 605
+V A ++ D E + D+ LSGGQK+RV +A + + I +LD+P +
Sbjct: 122 RVKRAMNIVGLDYEDYK--------DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 606 AVDAHTGSELF-------KEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
+D E+ KEY M T+I V+H +E + AD I+V+ +G+ G
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNM------TIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
Query: 658 K 658
Sbjct: 228 T 228
|
Length = 287 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 1092 PENGTIEL--IDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE 1149
P IE+ + V GE +L G+ G+ + IVG +GSGKSTL+ L L +
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 1150 PACGRIIIDNIDISTI---GLHDLRSR-LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205
P+ G + + + + LR+R +G + Q +L NL LE + +
Sbjct: 62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP-----NLTALE---NVALPL 113
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDN-----WSVGQRQLVSLGRALLKQARILVLDEA 1260
L D G LE L S G++Q V+L RA + +L DE
Sbjct: 114 ELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEP 173
Query: 1261 TASVDTAT 1268
T ++D AT
Sbjct: 174 TGNLDRAT 181
|
Length = 228 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 24/162 (14%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+ G++ G+ + + G GSGK+TL++ L L P GR++++ + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEE-------HSDREIWEALDKSQLGDIVRGKDQKLET 1225
L + I+ L LE HSD ++ EAL + L +
Sbjct: 75 LLYLGHAP------GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-------DR 121
Query: 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
PV S GQ++ V+L R LL + +LDE T ++D A
Sbjct: 122 PV----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 50/225 (22%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL-----FRLIEPA 1151
+E+ DL V G +L G+ G+ ++G GSGKSTL + + + + E
Sbjct: 1 LEIKDLHVSVGGKE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE-- 56
Query: 1152 CGRIIIDNIDISTIGLHDLRSRLGII--PQDPNLFEGTIRCNLDPLEEHSDREIWEALDK 1209
G I+ DI+ + + R+RLGI Q P G
Sbjct: 57 -GEILFKGEDITDLPPEE-RARLGIFLAFQYPPEIPGV---------------------- 92
Query: 1210 SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD 1269
+ D +R + + +S G+++ + + LL + + +LDE + +D
Sbjct: 93 -KNADFLRYVN-----------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140
Query: 1270 NLIQKIIRT-EFKDCTVCTIAH--RIPTVIDSDLVLVLSDGRVAE 1311
L+ ++I + +V I H R+ I D V VL DGR+ +
Sbjct: 141 RLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA-----CGRI 1155
+ + YG++ L I + P + I+G +G GKST I+ L +I+ G +
Sbjct: 17 GMNLWYGQHH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM 74
Query: 1156 II--DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL--DPL--EEHSDREIWEALDK 1209
NI + L +LR +G++ Q N F +I N+ P + +++ E ++K
Sbjct: 75 NYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEK 134
Query: 1210 S----QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
S L D V KD +L T L + S GQ+Q + + RAL +L++DE T+++D
Sbjct: 135 SLKDVALWDEV--KD-RLHTQAL----SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
Query: 1266 TATDNLIQKIIRTEFKDCTVCTIAH 1290
+ I+++I + T+ + H
Sbjct: 188 PVSTRKIEELILKLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----TAAY------VS 521
+S+ + +G A+ G G GKS+LL + G +G++ L G Y +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 522 QS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGG 580
QS A +E+NI FG DK ++ A + + L L Q + LSGG
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEI--ASRVNEMLGLVHM--QEFAKRKPHQLSGG 153
Query: 581 QKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKTVIFVTH-QVEF 638
Q+QRV LAR+L + + LLD+P A+D + E + + T + VTH Q E
Sbjct: 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA 213
Query: 639 LPAADFILVLKEGRIIQAGK 658
+ A I ++ G+ +Q G+
Sbjct: 214 MTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 31/210 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP--KISGEVRLCGT---AAYVSQS- 523
L GI ++V G V +CG G+GKS+L+ + G P GE+ G+ A+ + +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 524 -----------AWIQSGNIEENILFGS----PMDKAKYKKVIHAC-SLKKDLELFSHGDQ 567
+ ++ ENI G+ P + Y + +L ++L+L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+GD G GGQ+Q V++A+AL + A + +LD+P S++ L I+ L
Sbjct: 137 RPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDLKAH 190
Query: 628 TV--IFVTHQVEFLPA-ADFILVLKEGRII 654
V ++++H++ + A D I V+++G+ +
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 1092 PENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IE 1149
P++ E+ +KV YG L LV + P K I +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1150 PAC---GRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTI-------------RCN 1191
P GR++ + +I S I LR ++G++ Q PN F +I + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1192 LDPLEEHSDRE--IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249
LD L E S R IWE + KD KL+ E G S GQ+Q + + RA+
Sbjct: 134 LDELVEDSLRRAAIWEEV-----------KD-KLK----EKGTALSGGQQQRLCIARAIA 177
Query: 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
+ +L++DE +++D + ++++ + T+ + H +
Sbjct: 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-09
Identities = 76/405 (18%), Positives = 159/405 (39%), Gaps = 49/405 (12%)
Query: 278 SVATLIATIISIVVT-----VPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAW 332
S + T++ IVVT V +A+V + + +D+ L + L L
Sbjct: 146 SPKMFLLTVVWIVVTIWGGFVLMARVYK-HMAAARETEDKLQNDYQTILEGRKELTLNR- 203
Query: 333 EDRYRIQLEEMRGVEFRWLRKALYSQAFITF-IFWSSPIFVAAVTFGTSILLGAQLTAGS 391
E + + + + F + WS+ + + + + L + +
Sbjct: 204 ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTN 263
Query: 392 VLSAMA-TFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNV 450
V + + L+ PL + ++ + +V+ ++I+ + P+ +
Sbjct: 264 VAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR---PQAFPDW 320
Query: 451 -AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
+++ N F + ++ + I++ + RG V + G GSGKS+L + G SG
Sbjct: 321 KTLELRNVRFAYQDNAF--HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG 378
Query: 510 EVRLCGTAAYVSQSAWIQSGNIEE-NILFGS-------------PMDKAKYKKVIHACSL 555
E+ L G + + +E+ LF + P KA + +
Sbjct: 379 EILLDGKP--------VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLI------ 424
Query: 556 KKDLELFSHGDQTIIGDRGI---NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG 612
+K L+ +T + D LS GQK+R+ L AL ++ DI +LD+ + D
Sbjct: 425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484
Query: 613 SELFKEYI--MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQ 655
E ++ + + KT+ ++H + AD +L ++ G++ +
Sbjct: 485 REFYQVLLPLLKEQG-KTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 33/200 (16%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPA---CGRIIIDNIDISTIGLHDLRSRLGIIPQD 1180
G+ + ++G +G GKSTL+ + + G + ++ + + + ++GI+ QD
Sbjct: 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQD 85
Query: 1181 PNLFE-----GTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
LF + L AL++S L Q T
Sbjct: 86 ALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAF---HQDPAT-------- 134
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTI-AHRI 1292
S GQR V+L RALL Q + L+LDE + +D A +R +F+ + A I
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA--------LRDQFRQWVFSEVRAAGI 186
Query: 1293 PTV-IDSDLVLVLSDGRVAE 1311
PTV + DL V + RV E
Sbjct: 187 PTVQVTHDLQDVPAGSRVIE 206
|
Length = 213 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 36/198 (18%)
Query: 484 AVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-----------------AYVSQSAWI 526
A+ G G+GK+SL++ I G G + L G YV Q A +
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 527 -QSGNIEENILFG-SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584
+ N+ +G + A++ K++ ++ L+ + +LSGG+KQR
Sbjct: 88 FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQR 136
Query: 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT---VIFVTHQV-EFLP 640
V + RAL ++ L+D+P +++D EL Y+ LA + +++V+H + E L
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELL-PYLER-LAREINIPILYVSHSLDEILR 194
Query: 641 AADFILVLKEGRIIQAGK 658
AD ++VL++G++ G
Sbjct: 195 LADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 29/243 (11%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC---ILGE 503
M+ + ++N WY S+ L I++ + + A G G GKS+ L C +
Sbjct: 1 MSEIHASVKNLNL-WY--GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDF 57
Query: 504 IP--KISGEVRLCGTAAYVSQSAWIQSGNIEENILFG--SPMDKAKYKKVIHACSL---- 555
+P K+ GE+ + G Y S + + ++F +P K+ Y V + L
Sbjct: 58 VPNCKVKGELDIDGIDVY-SVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLA 116
Query: 556 --KKDLELFSHGDQTIIG----------DRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
KK L+ T +G D LSGGQ+QR+ +ARA+ + L+D+P
Sbjct: 117 KNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176
Query: 604 FSAVDAHTGSELFKEYIMTALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDL 662
SA+D + + + I N T+I VTH + + +D + + GRI++ ++
Sbjct: 177 CSALDP-VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
Query: 663 LQA 665
+
Sbjct: 236 FKN 238
|
Length = 251 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-09
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 36/239 (15%)
Query: 444 PRGMTNVAIQIENAEFCWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG 502
P + +V ++ N CW + R + +S + RG + V G+VG+G++ L+ + G
Sbjct: 250 PHEIGDVILEARNLT-CWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
Query: 503 EIP-KISGEVRLCGTAAYVSQSA-WIQSG---------------------NIEENIL--- 536
P K G V + G + A I++G NI ++L
Sbjct: 309 AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF 368
Query: 537 -FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595
F +D A ++I + ++++ + I LSGG +Q+ LA+ L +
Sbjct: 369 CFKMRIDAAAELQIIGS-AIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLTNP 422
Query: 596 DIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV-EFLPAADFILVLKEGRI 653
+ +LD+P VD E++K A +I V+ ++ E L +D +LV+ EG++
Sbjct: 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-09
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 460 CWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-KISGEVRLCGTA 517
W P + + +S + RG + + G+VG+G++ L+ C+ G P + GE+ + G
Sbjct: 267 AWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326
Query: 518 AYVSQSA-WIQSG-----------------NIEENIL--------FGSPMDKAKYKKVIH 551
+ I G + +NI GS +D A K I
Sbjct: 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTIL 386
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
S+++ + + I LSGG +Q+ LA+ L + I +LD+P +D
Sbjct: 387 E-SIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440
Query: 612 GSELFKEYIMTALANK--TVIFVTHQV-EFLPAADFILVLKEGRI 653
E++K ++ L + +I ++ ++ E L +D +LV+ EG++
Sbjct: 441 KYEIYK--LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 37/236 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IEL ++ VR +L ++ G+ IVG G+GK+TL+ L P+ G +
Sbjct: 32 IELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 1157 IDNIDISTIGLH-DLRSRLGI--------IPQDPNLFE-------GTIRCNLDPLEEHSD 1200
+ +LR R+G+ + + +I + L D
Sbjct: 90 LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA-ED 148
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
+ L + L D+ + S G+++ V + RAL+K +L+LDE
Sbjct: 149 LAAAQWLLE--LLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILDEP 198
Query: 1261 TASVDT-ATDNLIQKI--IRTEFKDCTVCTIAHR---IPTVIDSDLVLVLSDGRVA 1310
+D A + L+ ++ + + + H IP L+L +G V
Sbjct: 199 AQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH--RLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 35/219 (15%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN-----IDISTIGL 1167
L I+ G+++GI+G G+GKSTL++ + + +P G++ + I++ G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG-AGF 100
Query: 1168 -HDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETP 1226
+L R I G I L + D ++ E ++ ++LGD ++ P
Sbjct: 101 DPELTGRENIY------LRGLI---LGLTRKEIDEKVDEIIEFAELGD-------FIDQP 144
Query: 1227 VLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--TEF--KD 1282
V +S G ++ A + IL+LDE A D +K + E K+
Sbjct: 145 V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKN 197
Query: 1283 CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320
T+ ++H + + D + L G++ +P ++
Sbjct: 198 KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 45/214 (21%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I+ N YP L +S+ + +G + + G G+GK++LL + G + G+V
Sbjct: 2 IEFHNVSKA-YPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 512 RLCGTAAYVSQSAWI-----QSG------------NIEENILFGSPM-----DKAKYKKV 549
R+ G + + + G + EN+ P+ + + ++
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL--PLEVRGKKEREIQRR 117
Query: 550 IHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
+ A + LE H LSGG++QRV +ARA+ + L D+P +D
Sbjct: 118 VGAALRQVGLE---HKADAF----PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 610 HTGSE---LFKEYIMTALANK---TVIFVTHQVE 637
L K NK TVI TH +
Sbjct: 171 DLSERILDLLKR------LNKRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 1097 IELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
I++ ++ + + LP L ++ G+ I I+G+TGSGK+T I+ L L+ P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1154 RIII-----------DNIDISTIGL-------------HDLRSRLGIIPQ--DPNLFEGT 1187
I + L ++R R+G++ Q + LFE T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1188 IRCNL--DPLEEHSDREIWEALDKS-QLGDIVRGKDQKLE-TPVLENGDNWSVGQRQLVS 1243
I ++ P+ +E EA ++ + ++V + L+ +P S GQ++ V+
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRAAKYIELVGLDESYLQRSPF-----ELSGGQKRRVA 175
Query: 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC-TVCTIAHRIPTVID-SDLV 1301
L L + LV DE TA +D I +I K T+ + H + V++ +
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235
Query: 1302 LVLSDGRV 1309
+ DG++
Sbjct: 236 IFFKDGKI 243
|
Length = 305 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 1107 GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII----DNIDI 1162
G LP VL ++ G+ + + G +G+GKSTL+++L+ P GRI++ +D+
Sbjct: 18 GVRLP-VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76
Query: 1163 STIGLHD---LRSR--------LGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKS 1210
+ + +R + L +IP+ + +PL E RE A +
Sbjct: 77 AQASPREVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPLLERGVPREAARARARE 131
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSV-------GQRQLVSLGRALLKQARILVLDEATAS 1263
L + ++L W + G++Q V++ R + IL+LDE TAS
Sbjct: 132 LLARL--NIPERL----------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179
Query: 1264 VDTATDNLIQKIIR 1277
+D A ++ ++I
Sbjct: 180 LDAANRQVVVELIA 193
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 9e-09
Identities = 60/209 (28%), Positives = 87/209 (41%), Gaps = 50/209 (23%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-----EIPKISGEVRLCGTAAY----- 519
L G+SM + A+ G G GKS+ L C+ + +I G V L G Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 520 ----------VSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD----------- 558
V QS +I ENI +G P + A L +D
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYG-PRKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 559 -LELFSHGDQTI--IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS-- 613
L + D+ + D + LSGGQ+QR+ +AR L D ++ L+D+P SA+D S
Sbjct: 180 SLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI 239
Query: 614 -----ELFKEYIMTALANKTVIFVTHQVE 637
EL +EY TV+ VTH ++
Sbjct: 240 EDLIEELAEEY--------TVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 47/228 (20%)
Query: 462 YPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISGEVRLCG--- 515
+P R L+ +S+ + G V G G+GKS+L+ CI L E P SG V + G
Sbjct: 11 FPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-SGRVLVDGQDL 69
Query: 516 TAAYVSQSAWIQ----------------SGNIEENILFGSPM-----DKAKYKKVIHACS 554
TA +S+ + S + +N+ P+ KA+ K +
Sbjct: 70 TA--LSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL--PLELAGTPKAEIKARVTEL- 124
Query: 555 LKKDLELFSHGDQTIIGDR-GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD-AHTG 612
LEL D+ DR LSGGQKQRV +ARAL + + L D+ SA+D A T
Sbjct: 125 ----LELVGLSDKA---DRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 613 S--ELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
S EL K+ I L T++ +TH+++ + D + V+ GR+++ G
Sbjct: 178 SILELLKD-INREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TAAY 519
G+S +V RG + G G+GK++ + + + SG + G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 520 VSQSAWIQSG-NIEENI-----LFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
V Q + EN+ L+G P + + ++ EL DR
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR----------ERIDELLDFVGLLEAADR 127
Query: 574 GI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--MTALANKTVI 630
+ SGG ++R+++AR+L ++ LD+P +D T + ++ EYI + T++
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTIL 186
Query: 631 FVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662
TH +E D + ++ GRII G ++L
Sbjct: 187 LTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 418 QTKVSLDRISGF--LQEEELQ---EDATIVLPRG--MTNVAIQIENAE--FCWYPSSSRP 468
Q K S R++ + L +E Q E A I +P G + + I+ EN F +
Sbjct: 283 QAK-SKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGF-----GDKL 336
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--AYVSQS--A 524
+ +S K+ G V V G G+GKS+L I G+ SG +++ T AYV QS A
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396
Query: 525 WIQSGNIEENILFGSP-MDKAKYKKVIHA-CSLKKDLELFSHGDQT-IIGDRGINLSGGQ 581
+ + E I G + K + A F DQ +G LSGG+
Sbjct: 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN----FKGSDQQKKVGQ----LSGGE 448
Query: 582 KQRVQLARALYQDADIYLLDDPFSAVDAHT 611
+ RV LA+ L ++ LLD+P + +D T
Sbjct: 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 37/225 (16%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA-- 524
L +++ ++ G A G GSGKS+++ + G G VR+ T S S
Sbjct: 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI-TSTSKNK 78
Query: 525 --------------WIQSGNIEENIL----FGSPMDKAKYKKVIHACSLKK------DLE 560
+ +S EE +L FG P + ++ A + +K
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEEAEALAREKLALVGISES 137
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
LF LSGGQ +RV +A L + I +LD+P + +D EL +
Sbjct: 138 LFEKNP--------FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFK 189
Query: 621 MTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
+ T++ VTH ++ + ADF+ VL++G+++ +GK D+ Q
Sbjct: 190 KLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
Length = 280 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL-----IEPA 1151
IE+ +L + + +L + P ++G +G GKST I+ L R+
Sbjct: 4 IEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 1152 CGRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTI--------RCNLDPLEEHSDR 1201
G I +D +DI + + +LR ++G++ Q PN F +I R + + E+ +
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ E+L + L D V+ KL+ L S GQ+Q + + R + ++++DE
Sbjct: 122 RVEESLKAAALWDEVK---DKLDKSAL----GLSGGQQQRLCIARTIAVSPEVILMDEPC 174
Query: 1262 ASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
+++D + I+ +I +D T+ + H +
Sbjct: 175 SALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---L 1170
L G+T G+ + G +G+GKSTL++ + + P+ G+I DI+ + + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1171 RSRLGIIPQDPNLF-EGTIRCNLD-PL------EEHSDREIWEALDKSQLGDIVRGKDQK 1222
R ++G+I QD +L + T+ N+ PL + R + ALDK L D + +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--TEF 1280
L S G++Q V + RA++ + +L+ DE T ++D D L + I+R EF
Sbjct: 138 L-----------SGGEQQRVGIARAVVNKPAVLLADEPTGNLD---DALSEGILRLFEEF 183
Query: 1281 K--DCTVCTIAHRIPTVIDSDL-VLVLSDGRV 1309
TV H I + +L LSDG +
Sbjct: 184 NRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 64/218 (29%), Positives = 92/218 (42%), Gaps = 53/218 (24%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515
L+G+ + V RG +A+ G GSGKS+LL+ + G SGEV L G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 516 ---TAAYVSQS-AWIQSGNIEENI-----LFGSPMDKAKYKKVIHACSLKKDLELFSHGD 566
+V QS I + N EN+ L G +++ A +L + L L
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR----NGAKALLEQLGL----- 136
Query: 567 QTIIGDR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS-------EL 615
G R LSGG++QRV LARA D+ D+P +D TG L
Sbjct: 137 ----GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRI 653
+E+ T+I VTH ++ D L L G++
Sbjct: 193 NREH------GTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-08
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
VL I+ G+ + + G TGSGKS+L+ + +EP+ G+I H
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-----------KHS--G 487
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
R+ PQ + GTI+ N+ + + + QL + + +K +T + E G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
S GQR +SL RA+ K A + +LD +D T+ I F+ C ++++
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI-------FESCLCKLMSNKT 600
Query: 1293 PTVIDS--------DLVLVLSDG 1307
++ S D +L+L +G
Sbjct: 601 RILVTSKLEHLKKADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 1109 NLPL----VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164
NL L VL I G+ + I G TGSGK++L+ + +EP+ G+I
Sbjct: 44 NLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--------- 94
Query: 1165 IGLHDLRSRLGIIPQDPNLFEGTIRCNLD---PLEEHSDREIWEALDKSQLGDIVRGKDQ 1221
H R+ Q + GTI+ N+ +E+ + + +A QL + + +
Sbjct: 95 --KHS--GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKA---CQLEEDITKFPE 147
Query: 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK 1281
K T + E G S GQR +SL RA+ K A + +LD +D T+ I F+
Sbjct: 148 KDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI-------FE 200
Query: 1282 DCTVCTIAHRIPTVIDS--------DLVLVLSDG 1307
C +A++ ++ S D +L+L +G
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-08
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPF---SAVDAHTGSELFKEYIMTALANKTVIFV 632
LS GQ++R+++ARAL D + LLD+P + + +EL +E TV+ V
Sbjct: 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE---LRERGITVLLV 199
Query: 633 THQVEFLPA-ADFILVLKEGRIIQAGKYDD 661
H ++ + + AD + VL +GR+I G D+
Sbjct: 200 EHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHD 1169
VL I G+ + + G +GSGK+TL+ + L G + + ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1170 LRSRLGIIPQDPNLFEG-TIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPV 1227
LR +G I Q NL T R N+ LE + EA +++ LE
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA---------RAMLEAVG 130
Query: 1228 LEN-----GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD 1282
L + N S GQ+Q V++ RAL+ + ++++ DE TA++D+ + + ++++ ++
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1283 --CTVCTIAH--RIPTVIDSDLVLVLSDGRVA 1310
CT+ + H RI V +D ++ + DG++
Sbjct: 191 QGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 38/226 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515
+ ++ + ++G A+ G GSGKS+L+ I + +G V +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 516 ---TAAYVSQSAWIQ--SGNIEENILFGS-----PMDKAKYKKVIHACSLKKDLELFSHG 565
V Q Q +E I+FG +D+ K A L DL FS
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY----AHRLLMDLG-FS-- 135
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA---HTGSELFKEYIMT 622
+ ++ +SGGQ +++ + L + DI +LD+P + +D L K
Sbjct: 136 -RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 623 ALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQAGT 667
NKT+I V+H + E AD ++V+KEG I+ +L +
Sbjct: 195 --ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 29/226 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-AYVSQSAWIQS 528
L IS G A+ G G+GKS+LL + G +G + + G + S +A + +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 529 G--------------NIEENILFGSPMDKAKYKKVIHACSLKKD-LELFSHGDQTIIGDR 573
G + EN+ G K +++ L + E H I D
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGG---IVNRRLLNYEAREQLEHLGVDIDPDT 136
Query: 574 GI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVI 630
+ LS GQ+Q V++A+AL ++A + D+P S++ A +LF+ ++ L + ++
Sbjct: 137 PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEGRVIL 194
Query: 631 FVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
+V+H++E + A D I V K+GR + +DD+ A D + LV A
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRYVAT--FDDM--AQVDRDQLVQA 236
|
Length = 501 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 14/202 (6%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IE--PACGRI 1155
D+ + YG LHGI+ F + ++G +G GKST ++ L R+ IE G I
Sbjct: 9 DVHLSYGNYE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66
Query: 1156 IIDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLD---PLEEHSDREIWEALDKS 1210
+ +I S + L +LR +G++ Q P F ++ N+ + D+E+ + +
Sbjct: 67 KFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEE 126
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
L K+ K + N +S GQ+Q + + RAL + ++++LDE T+++D + +
Sbjct: 127 SLKQAAIWKETK--DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184
Query: 1271 LIQKIIRTEFKDCTVCTIAHRI 1292
I++ + T + H +
Sbjct: 185 EIEETLMELKHQYTFIMVTHNL 206
|
Length = 251 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 42/248 (16%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPAC---GRI 1155
DL V Y + L+ ++ F + ++G +GSGKSTL++++ R+ + P G I
Sbjct: 10 DLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 1156 IID--NIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD---PLEEHSDREIW-EALDK 1209
+ + NI DLR +G++ Q PN F +I N+ L+ D+++ EA++K
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK 127
Query: 1210 SQLG----DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
S G D V KD+ ++ + +G GQ+Q V + R L +I++LDE T+++D
Sbjct: 128 SLKGASIWDEV--KDRLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 1266 TATDNLIQKIIRTEFKDCTVCTIAH------RIPTVIDSDLVLVLSDGRVAEFDTPGRLL 1319
+ I++ + D T+ + RI SD DG + E++
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQASRI-----SDRTGFFLDGDLIEYN------ 229
Query: 1320 EDKSSMFL 1327
D MF+
Sbjct: 230 -DTKQMFM 236
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 38/202 (18%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+I+L + YG + L IT P G+ + ++G +G+GKS+L++ L L P G +
Sbjct: 2 SIQLNGINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1156 IIDN--------IDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEA 1206
I I LR +G++ Q NL+ T++ NL EA
Sbjct: 60 NIAGNHFDFSKTPSDKAIRE--LRRNVGMVFQQYNLWPHLTVQQNL-----------IEA 106
Query: 1207 ------LDKSQLGDIVRGKDQKLETPVLEN-GDNW----SVGQRQLVSLGRALLKQARIL 1255
L K Q + ++ LE L+ D + S GQ+Q V++ RAL+ + ++L
Sbjct: 107 PCRVLGLSKDQ---ALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVL 163
Query: 1256 VLDEATASVDTATDNLIQKIIR 1277
+ DE TA++D I IIR
Sbjct: 164 LFDEPTAALDPEITAQIVSIIR 185
|
Length = 242 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC---GRIIIDNIDISTIGLHDL 1170
L GI G+ +G+ G G+GKSTL++ L + P G I + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1171 -RSRLGIIPQD----------PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGK 1219
R+ + II Q+ N+F G L + A L ++
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGN-EITLPGGRMAYNAMYLRA---KNLLRELQLD 131
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ PV + G GQ+QLV + +AL KQAR+L+LDE ++S+ ++ IIR
Sbjct: 132 ADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 1280 FKDCTVCT-IAHRIPTVID-SDLVLVLSDGR 1308
C I+H++ V D + V+ DG+
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 60/236 (25%)
Query: 1112 LVLHGITCAFPG-------------GKKIGIVGRTGSGKSTLIQALFRLIEPAC------ 1152
L + IT F G G+ + + G G+GKSTL++ L
Sbjct: 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVL-------SGVYPHG 58
Query: 1153 ---GRIIIDNIDISTIGLHDL-RSRLGIIPQD----------PNLFEG---TIRCNLDPL 1195
G II + ++ + D R+ + II Q+ N+F G T +D
Sbjct: 59 TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD 118
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
+ + L + +L D TPV G +GQ+QLV + +AL KQAR+L
Sbjct: 119 AMYLRAQKL--LAQLKL-------DINPATPVGNLG----LGQQQLVEIAKALNKQARLL 165
Query: 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTV-CT-IAHRIPTVID-SDLVLVLSDGR 1308
+LDE TAS+ + ++ IIR + K + C I+H++ V SD + V+ DGR
Sbjct: 166 ILDEPTASLTESETAVLLDIIR-DLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 26/242 (10%)
Query: 1097 IELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
I L ++ Y P L + G +G TGSGKST++Q L L P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1154 RIIIDNIDISTIG----LHDLRSRLGIIPQDP--NLFEGTIRCNL--DPLEEHSDREIWE 1205
+ +D+ I++ + +R ++G++ Q P LFE T+ ++ P +E E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
AL + +L + G + L +N S GQ + V++ L + +ILVLDE TA +D
Sbjct: 123 ALAREKLALV--GISESLFE---KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 1266 TATDNLIQKIIRTEFKDC-----TVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319
+K + T FK T+ + H + V + +D V VL G++ P +
Sbjct: 178 PKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
Query: 1320 ED 1321
+D
Sbjct: 234 QD 235
|
Length = 280 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 37/214 (17%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
AI++++ F +Y +S + GISM + R A+ G G GKS+ + L I ++ G
Sbjct: 7 AIKVKDLSF-YYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP 62
Query: 511 VRLCGTAAYVSQSAWIQSGNIE---------------------ENILFG----SPMDKAK 545
V++ G + Q+ + NI EN+ +G + + +A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 546 YKKVIHACSLKKDL--ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
+++ + L E+ +++ +G LSGGQ+QR+ +ARAL + L+D+P
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALG-----LSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 604 FSAVDAHTGSELFKEYIMTALANKTVIFVTHQVE 637
SA+D + +E I + + T+ VTH ++
Sbjct: 178 CSALDP-IATMKVEELIHSLRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------- 517
S P ++ +S + +G + V G++G+G++ L+ + G +P+ SG V L G
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQD 323
Query: 518 ------AYVSQS----AWIQSGNIEENI------LFGSPMDKAKYKKVIHACSLKKD-LE 560
Y+S+ + +++EN+ F K+ A S D +
Sbjct: 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVS---DFIR 380
Query: 561 LFS----HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
LF+ +Q IG LSGG +Q+V +AR L + +LD+P VD E++
Sbjct: 381 LFNIKTPSMEQ-AIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY 435
Query: 617 KEYIMTALANK------TVIFVTHQV-EFLPAADFILVLKEGRI 653
+ L N+ ++I V+ ++ E L +D ILV+ EGRI
Sbjct: 436 Q------LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 39/225 (17%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYV------- 520
P L+ +S+ ++ G V + G G GKS+L +LG G V G Y
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 521 ------------SQSAWIQSGNIEENILFGSP------MDKAKYKKVIHACSLKKDLELF 562
S SA + + I G P +D+++ K I L + L
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAE--LLDMVGL- 139
Query: 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
LSGGQ QR+ +ARAL + +LD+ S +D + + + ++
Sbjct: 140 ---RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE--LLR 194
Query: 623 ALANK---TVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663
L +F+TH + + + + V+ +G+I++ LL
Sbjct: 195 KLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 37/200 (18%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+LH ++ FP GK G++G GSGKSTL++ L R P+ G I++D + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREI-------WEALDKSQLGDIVRGKDQKLET 1225
++ +PQ L E + RE+ W LG +K+E
Sbjct: 86 KVAYLPQ-----------QLPAAEGMTVRELVAIGRYPWHG----ALGRFGAADREKVEE 130
Query: 1226 PVLENG---------DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD----NLI 1272
+ G D+ S G+RQ + + + +R L+LDE T+++D A L+
Sbjct: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190
Query: 1273 QKIIRTEFKDCTVCTIAHRI 1292
++ + + TV + H I
Sbjct: 191 HRLSQE--RGLTVIAVLHDI 208
|
Length = 265 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 42/254 (16%)
Query: 447 MTNVAIQIENAEFCWY-PSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP 505
MT + I N ++ + + GIS ++ G +A+ G GSGKS ILG +P
Sbjct: 2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP 61
Query: 506 K-----ISGEVRLCGT---AAYVSQSAWIQSGNIEENILFGSPMD-----KAKYKKVIHA 552
SG + G AA Q ++ I ++F PM K++
Sbjct: 62 SPAAAHPSGSILFDGEDLLAASERQLRGVRGNKI--GMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 553 CSL-----KKD-----LELFSHGDQTIIGD--RGIN-----LSGGQKQRVQLARALYQDA 595
L + LEL + I + + ++ LSGGQ+QRV +A AL +
Sbjct: 120 LRLHRGLSRAAARARALELL---ELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176
Query: 596 DIYLLDDPFSAVDAHTGSE---LFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEG 651
D+ + D+P +A+D ++ L KE + A ++F+TH + + AD + V++ G
Sbjct: 177 DLLIADEPTTALDVTVQAQILDLLKE--LQAELGMAILFITHDLGIVRKFADRVYVMQHG 234
Query: 652 RIIQAGKYDDLLQA 665
I++ G + L A
Sbjct: 235 EIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR---LIEP 1150
I D+ + YG+ L GI F + ++G +G GKST ++ L R LI
Sbjct: 3 KKIITSSDVHLFYGKFE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60
Query: 1151 AC--GRIIIDNIDISTIGLH--DLRSRLGIIPQDPNLFEGTIRCN------LDPLEEHS- 1199
G + + +I LR ++G++ Q PN F +I N L +++ +
Sbjct: 61 VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV 120
Query: 1200 -DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
D + +L ++ + D V+ + E+ + S GQ+Q V + R L + +++LD
Sbjct: 121 LDEAVETSLKQAAIWDEVKDH-------LHESALSLSGGQQQRVCIARVLAVKPDVILLD 173
Query: 1259 EATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
E T+++D + I+ ++ T+ + H +
Sbjct: 174 EPTSALDPISSTQIENMLLELRDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-08
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 29/235 (12%)
Query: 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI 507
+NVAI + + + ++ +S + RG + G G+GKS++ +LG I
Sbjct: 1 SNVAIDLVGVSKSY---GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 508 SGEVRLCGT-------AAYVSQSAWIQSGNIE------ENIL-FGS--PMDKAKYKKVIH 551
G++ + G A V+ Q N++ EN+L FG M + + VI
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
SL + L S D R LSGG K+R+ LARAL D + +LD+P + +D H
Sbjct: 118 --SLLEFARLESKADV-----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH- 169
Query: 612 GSELFKEYIMTALA-NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
L E + + LA KT++ TH +E D + VL+ GR I G+ L+
Sbjct: 170 ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I+ +++ RYG+ L V+ G++ G+ G++G G+GK+T ++ L L P G I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQ----DPNLFEGTIRCNLD------PLEEHSDRE-IWE 1205
+ + + H R R+G++PQ DP+ T+R NL L + R +
Sbjct: 66 LCGEPVPSRARH-ARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVPP 121
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
L+ ++L + K + V E S G ++ ++L RAL+ +LVLDE T +D
Sbjct: 122 LLEFAKL-------ENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Query: 1266 TATDNLIQKIIRT 1278
+L+ + +R+
Sbjct: 171 PQARHLMWERLRS 183
|
Length = 306 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAYVSQ-- 522
L+ I++K+ + A+ G G GKS+ L + L E KI G V G Y +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 523 --------SAWIQSGN-----IEENILFGSPM----DKAKYKKVIHACSLKKDLELFSHG 565
Q+ N I +NI +G + DK K +++ SLKK
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ-SLKKSALWNEVK 141
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
D+ + ++LSGGQ+QR+ +AR L + ++ L+D+P SA+D + ++ +E I+
Sbjct: 142 DK--LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI-EELIINLKE 198
Query: 626 NKTVIFVTHQVE 637
+ T+I VTH ++
Sbjct: 199 SYTIIIVTHNMQ 210
|
Length = 254 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 41/226 (18%)
Query: 471 SGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR-----------LCGTAAY 519
+S + G + + G GSGKS+LL C+ G + G + A
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 520 VSQSAWIQSGNIEENILFGSPMD--------------KAKYKKVIHACSLK--KDLELFS 563
+ + G + +N G M A++ I A + +++E+
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI-- 137
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
D T I D SGG +QR+Q+AR L + +D+P +D + L ++
Sbjct: 138 --DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD--LLRG 193
Query: 624 L---ANKTVIFVTHQ---VEFLPAADFILVLKEGRIIQAGKYDDLL 663
L VI VTH L A +LV+++GR++++G D +L
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLL--AQRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 34/244 (13%)
Query: 1094 NGTIELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP 1150
+ I L ++ Y + P L+ + F K ++G TGSGKST+IQ LI
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1151 ACGRIIIDNIDIST-----IGLHDLRSRLGIIPQDP--NLFEGTIR-------CNLDPLE 1196
G+ I+ + I + LR +G++ Q P LF+ TI NL +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1197 EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
+ + +++ E L QL +D +P +G GQ++ V+L + LV
Sbjct: 124 QEAYKKVPELLKLVQL-----PEDYVKRSPFELSG-----GQKRRVALAGIIAMDGNTLV 173
Query: 1257 LDEATASVDTATD----NLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
LDE T +D + NL +++ + K + + H + V+ +D V+V+ +G+V
Sbjct: 174 LDEPTGGLDPKGEEDFINLFERLNKEYKK--RIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
Query: 1312 FDTP 1315
+P
Sbjct: 232 IGSP 235
|
Length = 289 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 55/237 (23%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L +S +V G + + G G+GKS+LL+ + G SG ++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARH 73
Query: 518 -AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK-DLELFSHGDQTI----IG 571
AY+SQ ++ F P V H +L + D + +
Sbjct: 74 RAYLSQ---------QQTPPFAMP--------VWHYLTLHQPDKTRTELLNDVAGALALD 116
Query: 572 D---RGIN-LSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAHTGSELFKEYI 620
D R N LSGG+ QRV+LA + Q + LLD+P +++D S L +
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176
Query: 621 MTALANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQA-------GTDF 669
++ +H + L A +LK G+++ +G+ +++L G +F
Sbjct: 177 ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNF 233
|
Length = 248 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 3e-08
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 58/190 (30%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL 1183
G+ I IVG GSGK+TL +AL R + P G +I + + + D + + + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1184 FEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243
S R ++
Sbjct: 62 ---------------------------------------------------SGELRLRLA 70
Query: 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRT-------EFKDCTVCTIAHRIPTVI 1296
L A + +L+LDE T+ +D + L+ + K+ TV + +
Sbjct: 71 LALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 1297 DSDLVLVLSD 1306
+ L
Sbjct: 131 PALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 3e-08
Identities = 68/284 (23%), Positives = 131/284 (46%), Gaps = 34/284 (11%)
Query: 399 FRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAI-QIENA 457
F+ L + R F L + Q K L + FL +++ Q D +L + + +I N
Sbjct: 34 FQKLNKYQRAFAWL-KLPKQKKAELKQ---FLNKKKTQVD---LLKEDFNHANVFEIRNF 86
Query: 458 EFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVR 512
F WY + ++ L +++ + R A G G GKS+ L + L E GE+
Sbjct: 87 NF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 513 LCGTAAYVSQSAWIQ---------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
GT + + ++ +I +N+ +G + +K++ ++K
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI-VEK 204
Query: 558 DLELFSHGDQTI--IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
L+ + D+ + G LSGGQ+QR+ +ARA+ + ++ L+D+P SA+D +++
Sbjct: 205 SLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI 264
Query: 616 FKEYIMTALANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGK 658
+E I+ ++I VTH + + +D + +G I +AG+
Sbjct: 265 -EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
|
Length = 329 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 38/215 (17%)
Query: 462 YPSSSRPTLSGISMKVDRG--MRVAVCGMVG---SGKSSLLSCILGEIPKISGEVRLCG- 515
YP+ + TL +++V+ G V G++G GK++ + + G + G++ +
Sbjct: 3 YPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD 61
Query: 516 TAAYVSQSAWI-QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
T +Y Q G + + S + K Y + K L++ D+ +
Sbjct: 62 TVSYKPQYIKADYEGTVRD---LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP---- 114
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE-------LFKEYIMTALANK 627
LSGG+ QRV +A L +DADIYLLD+P A+ E + + + K
Sbjct: 115 -ELSGGELQRVAIAACLSKDADIYLLDEP----SAYLDVEQRLMASKVIRRFAEN--NEK 167
Query: 628 TVIFVTHQVEFLPA---ADFILVLKEGRIIQAGKY 659
T V H + + AD ++V EG +
Sbjct: 168 TAFVVEH--DIIMIDYLADRLIVF-EG---EPSVN 196
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 35/227 (15%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW- 525
+ L I++K+ + G GSGKS+LL + I ++++ G Y + +
Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 526 -------------IQSGN------IEENILFGSPM------DKAKYKKVIHACSLKKDLE 560
Q N I +NI + P+ +K + KK++ C K L
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
+ + LSGGQ+QR+ +ARAL + L+D+P S +D + E +
Sbjct: 141 KEVYDR---LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKL 195
Query: 621 MTALANK-TVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665
+T L N+ ++ V+H + + AD++ L G +++ G +++ +
Sbjct: 196 ITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 37/217 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI--LGEI---PKISGEVRLCGTAAY----- 519
L G+++++ A+ G GSGKS+LL L E+ ++SGEV L G +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 520 --------VSQ-SAWIQSGNIEENILFGSPMDK-AKYKKVIHACSLKKDLELFSHGDQTI 569
V Q I + +I EN+ G +++ K KK + ++ LE D+
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDE-- 135
Query: 570 IGDR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
+ DR LSGGQ+QR+ +ARAL ++ L D+P + +D +++ E + L
Sbjct: 136 VKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI--ESLFLELK 193
Query: 626 NK-TVIFVTHQVEFLPAA----DFILVLKEGRIIQAG 657
T++ VTH F A D++ L +G+I++ G
Sbjct: 194 KDMTIVLVTH---FPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 31/212 (14%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQD--- 1180
G+ +G++G G+GK+TL++A+ LI PA G + + H +G +PQ
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEF 60
Query: 1181 ----PNLFEGTI---RCNLDPLEEHSDREIW----EALDKSQLGDIVRGKDQKLETPVLE 1229
P T+ R + +AL + L ++ PV E
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-------RPVGE 113
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD-CTVCTI 1288
S GQRQ V + RAL + +L+LDE +D T L+ ++ +
Sbjct: 114 ----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 1289 AHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
H + + + +VL +GRV TP +L +
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 54/229 (23%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP--------------------KISG 509
L + + + G VA+ G GSGKS+LL + G I +++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 510 EVR--LCGTAAYVSQSAWIQSGNIEENILFG----SPM--------DKAKYKKVIHACSL 555
++R T Q + ++ EN+L G +P + + ++ + A +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT- 138
Query: 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ + F+H R LSGGQ+QRV +ARAL Q A + L D+P +++D +
Sbjct: 139 RVGMVHFAH-------QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA--- 188
Query: 616 FKEYIMTALAN------KTVIFVTHQVEF-LPAADFILVLKEGRIIQAG 657
+M L + TV+ HQV++ L + I+ L++G + G
Sbjct: 189 --RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 107/534 (20%), Positives = 205/534 (38%), Gaps = 76/534 (14%)
Query: 168 KETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAK 227
+E F +G + + F L+ + + GMH+ + L + K L
Sbjct: 47 EENFLGQGSLFS--FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEI 104
Query: 228 QSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATII 287
+ ++ + D+ ++ + + P+ I LA+ IA +A L +
Sbjct: 105 DRRGAHNLIPLLTHDIDQINAFLFI-----FPPIAIALAIFFF----CIAYLAYLSVPMF 155
Query: 288 SIVVTVPVAKVQEEYQDKLMAAK---------DERMRKTSECLRNMRILKLQA----WED 334
+I ++ + + + K D T + LK+
Sbjct: 156 AITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFA 215
Query: 335 RYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGT---SILLGAQLTAGS 391
IQ + IF+AA FG +L+G L A +
Sbjct: 216 HGAIQESANN------IADLHII---------EILIFIAAENFGQLLFFLLIGCALFAAA 260
Query: 392 VL-----SAMATFRI----LQEPLRNFPDLVSMMAQTKVSLDRISGFLQ-------EEEL 435
+ +A++ F + ++ PL + ++AQ +++ R++ F + E EL
Sbjct: 261 MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320
Query: 436 QE-DATIVLPRGMTNVAIQIENAEFCWY-PSSSRP-TLSGISMKVDRGMRVAVCGMVGSG 492
+ D ++L + +I++++ P S L I +++ +G V + G G G
Sbjct: 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCG 380
Query: 493 KSSLLSCILGEIPKISGEVRLCGTAAYV-SQSAWIQ--SGNIEENILFGSPM--DKAKYK 547
KS+L G GE+ L G A S+ + S + LF + D+ ++
Sbjct: 381 KSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHA 440
Query: 548 KVIHACSLKKDLELFSHGDQTIIGDRGIN----LSGGQKQRVQLARALYQDADIYLLDDP 603
+ +A + LE+ D+ I D G + LS GQ++R+ L A +D I L D+
Sbjct: 441 SLDNAQQYLQRLEI---ADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE- 496
Query: 604 FSAVDAHTGSELFKEYIMTALA--NKTVIFVTHQVEFLPAADFILVLKEGRIIQ 655
++A F E ++ L KT+I ++H ++ AD I+ L G I++
Sbjct: 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 29/234 (12%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL--FRLIEPACG 1153
+E+ DL V +L G+ G+ I+G GSGKSTL + E G
Sbjct: 3 MLEIKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIP--QDPNLFEG-----------TIRCNLDPLEEHSD 1200
I+ D DI + + R+R GI Q P G R +
Sbjct: 62 EILFDGEDILELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFI 120
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
+E+ E + + ++ LE V + +S G+++ + + LL + ++ +LDE
Sbjct: 121 KELKEKAEL------LGLDEEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 1261 TASVDTATDNLIQKIIRTEF-KDCTVCTIAH--RIPTVIDSDLVLVLSDGRVAE 1311
+ +D ++ + I + V I H R+ I D V VL DGR+ +
Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGT-------- 516
+ GI M+ ++ A+ G GSGKS+ L + +I +++G++ G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 517 -------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKV---IHACSLKKDLELFSHGD 566
V Q + +I ENI F K KKV I SLK+ L+ D
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQ-AALW---D 151
Query: 567 QTI--IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
Q + + LSGGQ+QR+ +ARA+ DI L+D+P SA+D + +L E M L
Sbjct: 152 QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL--EETMFEL 209
Query: 625 ANK-TVIFVTH 634
T+I VTH
Sbjct: 210 KKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 25/221 (11%)
Query: 1112 LVLHGITCAFPGGKKIG-------------IVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
L L G++ +F G K + ++G G+GK+TL+ + P G ++ D
Sbjct: 6 LYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFD 65
Query: 1159 -NIDISTIGLHDLRSRLGIIP--QDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGD 1214
+ D++ + H +R GI Q P +FE T+R NL+ L + D+ ++ +L +
Sbjct: 66 GDTDLTKLPEHR-IARAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAE 123
Query: 1215 IVRGKDQKLETPVLEN-----GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD 1269
R D+ L T L + S GQ+Q + +G L + ++L+LDE A + A
Sbjct: 124 ERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAET 183
Query: 1270 NLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
+++++ ++ + H + V + +D V VL +G V
Sbjct: 184 EKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224
|
Length = 249 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 5e-08
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDA----HTGSELFKEYIMTALANKTVIFV 632
LSGGQ+QRV + RA+ ++ ++L D+P S +DA E+ + + T ++V
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQR---LHRRLKTTSLYV 191
Query: 633 TH-QVEFLPAADFILVLKEGRIIQAG 657
TH QVE + AD ++V+ G Q G
Sbjct: 192 THDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 60/281 (21%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPACGR 1154
IE+ +L ++ VL I+ G+ +GI+GR+G+GKS L+ L + EP GR
Sbjct: 1 IEVKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1155 II---------------------------------IDNIDISTIGLHDLRSRLGIIPQ-- 1179
II +D ++S +R R+ I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1180 -----DPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234
D + + + L+ + + A+D L ++V +L + +
Sbjct: 119 FALYGDDTVLDNVLE-ALEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDL 169
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVC-TIAHRIP 1293
S G++Q V L R L K+ + + DE T ++D T L+ + K + + P
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 1294 TVID--SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332
VI+ SD + L +G + E TP ++ ++F++ V+E
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTP----DEVVAVFMEGVSE 266
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 44/180 (24%), Positives = 89/180 (49%), Gaps = 29/180 (16%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+EL ++ R+G L + G+ + ++G +G GK+T ++ + L EP GRI
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQD----PNLFEGTIRCNLD-PLEEHS------DREIWE 1205
I D++ + D R + ++ Q+ P++ T+ N+ L+ D + E
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVRE 113
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+ Q+ ++ K ++L S GQRQ V+LGRA++++ ++ ++DE +++D
Sbjct: 114 VAELLQIEHLLDRKPKQL-----------SGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 31/212 (14%)
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC---ILGEIP- 505
V I + F WY L GISM+++ VA G G GKS+ L + IP
Sbjct: 2 VKIDARDVNF-WY--GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA 58
Query: 506 -KISGEVRLCGTAAYVSQSAWIQSGNIEENI--LFG--SPMDKAKYKKVIHACSLK--KD 558
++ GE+R+ G Y +Q + +N+ +F +P K+ ++ V + + KD
Sbjct: 59 TRLEGEIRIDGRNIYDKG---VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKD 115
Query: 559 LELFSHG-DQTIIG------------DRGINLSGGQKQRVQLARALYQDADIYLLDDPFS 605
++T+ G + LSGGQ+QR+ +ARA+ + L+D+P S
Sbjct: 116 NAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 606 AVDAHTGSELFKEYIMTALANKTVIFVTHQVE 637
A+D + +++ +E I + T++ VTH ++
Sbjct: 176 ALDPISTAKV-EELIHELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 26/168 (15%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI---GLHD 1169
VL ++ + G+ +G++GR+G GKSTL + L L +PA G + D+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1170 LRSRLGIIPQD-PNLF--EGTIRCNL-DPLEEHSD-------REIWEALDKSQL-GDIVR 1217
R + ++ QD P+ T+R + +PL + I E LD L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
++L S GQ Q +++ RAL + +++VLDEA +++D
Sbjct: 146 KLPRQL-----------SGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 8e-08
Identities = 60/272 (22%), Positives = 102/272 (37%), Gaps = 53/272 (19%)
Query: 1064 SIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPG 1123
+E ++ G PV+E + G + + VR GE I
Sbjct: 246 ELEDLFPEPPEEGIGEPVLE----VRNLSGGGKVRDVSFTVRAGE--------I------ 287
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-----------LRS 1172
+GI G G+G++ L +ALF + G I++D + D R
Sbjct: 288 ---LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKL-------ET 1225
G++ I N+ L +D+ + + ++L E
Sbjct: 345 SEGLVLDMS------IAENIT-LASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ 397
Query: 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD-CT 1284
P+ S G +Q V L R L ++L+LDE T +D I ++IR +
Sbjct: 398 PIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 1285 VCTIAHRIPTVID-SDLVLVLSDGR-VAEFDT 1314
+ I+ +P ++ SD +LV+ +GR V E D
Sbjct: 454 ILMISSELPELLGLSDRILVMREGRIVGELDR 485
|
Length = 500 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 24/223 (10%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA 524
+ + L +SM ++ G GSGK++ L + K+SG R G +S
Sbjct: 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGDVLLGGRSI 90
Query: 525 WIQSGNIE----ENILFGSP-------MDKAKYKKVIHACSLKKDLELFSHGDQTIIG-- 571
+ +E +LF P MD H +K+ + T +G
Sbjct: 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW 150
Query: 572 --------DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
D LSGGQ+Q + LAR L + ++ LLD+P SA+D T +E +E+I +
Sbjct: 151 DAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP-TTTEKIEEFIRSL 209
Query: 624 LANKTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQA 665
TVI VTH + + +D + +GR+++ G + L +
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-08
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 1129 IVGRTGSGKSTLIQALFRL--IEPAC---GRIIIDNIDISTIGLHD--LRSRLGIIPQDP 1181
I+G +G GKST ++A+ R+ + P+C G ++ D DI + LR ++G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 1182 NLFEGTIRCNL---DPLEEHSDR----EIWE-ALDKSQLGDIVRGKDQKLETPVLENGDN 1233
N F +I N+ L +D+ EI E +L K+ L D V + K N
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK-------NALG 182
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
S GQ+Q + + R L + IL+LDE T+++D I+ +I+ T+ + H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH 239
|
Length = 286 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 23/174 (13%)
Query: 1107 GENLPL------VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI 1160
GE L L V +T P G I+G G GKSTL++ L RL+ PA G + +D
Sbjct: 10 GEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69
Query: 1161 DISTIGLHDLRSRLGIIPQDPNLFEGTI---------RCNLDPLEEHSDREIWEALDKSQ 1211
I ++ R+G++ Q+ G I R PL +E EA+ K+
Sbjct: 70 HIQHYASKEVARRIGLLAQNATT-PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+ + ++ D S GQRQ + L ++ I++LDE T +D
Sbjct: 129 -------QATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-07
Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 32/222 (14%)
Query: 461 WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAY- 519
+ +S +V G V + G+ G+G+S L+ I G SG + L G
Sbjct: 265 VKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 520 -VSQSAWIQSG-----------------NIEENILFGSPMDKAKYKKVI--------HAC 553
+S + G ++ EN++ G K + A
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 554 SLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
L ++ ++ + +LSGG +Q++ LAR L + D+ + P +D
Sbjct: 385 ELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440
Query: 614 ELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRII 654
+ + + A K V+ ++ ++ + +D I V+ EGRI+
Sbjct: 441 FIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 31/209 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP--KISGEVRLCG---TAAYVSQS- 523
L +S+KV G V++CG G+GKS+L+ + G P GE+ G A+ + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 524 -----------AWIQSGNIEENILFGSPMDKAK---YKKVIHACS-LKKDLELFSHGDQT 568
A ++ ++ ENI G+ + Y + L L+L +
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP 140
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
+ NL GQ+Q V++A+AL + A + +LD+P +++ + L I+ L
Sbjct: 141 V-----GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD--IIRDLKAHG 193
Query: 629 V--IFVTHQVEFLPA-ADFILVLKEGRII 654
+ I+++H++ + A +D I V+++GR I
Sbjct: 194 IACIYISHKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE---PACG 1153
I++ DL Y + + GI+ K I+G +G GKST I+ L R+ E P
Sbjct: 8 IKVKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1154 RIIID----NIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL-------DPLEEHSDRE 1202
++D NI I ++ LR ++G++ Q PN F +I N+ L + E
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDE 125
Query: 1203 IWE-ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
I E AL + L V+ K K + S GQ+Q + + RAL + ++L++DE
Sbjct: 126 IVESALKGAALWQEVKDKLNK-------SALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 1262 ASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
+++D ++++I + + T+ + H +
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 1e-07
Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 50/179 (27%)
Query: 483 VAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMD 542
+ + G GSGK++L + E+ G V + +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-------------- 50
Query: 543 KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDD 602
I+G + + SG + R+ LA A D+ +LD+
Sbjct: 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 603 PFSAVDAHTGSELFKEYIMTAL------ANKTVIFVTHQVEFL------PAADFILVLK 649
S +DA + L + L N TVI T+ + L D +VL
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 464 SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------ 517
S +P++ +S + +G + + G+VG+ ++ ++ + G K +G + L G
Sbjct: 258 SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA 317
Query: 518 --------AYVSQ---SAWIQSG-NIEENILFGSPMDKAKYK-KVIHACSLKKD------ 558
A V++ S I + +I N L S + K K ++ +K D
Sbjct: 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLI-SNIRNYKNKVGLLDNSRMKSDTQWVID 376
Query: 559 -LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
+ + + G +T IG +LSGG +Q+V + R L +I +LD+P +D E+++
Sbjct: 377 SMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432
Query: 618 EYIMTALANKTVIFVTHQV-EFLPAADFILVLKEGRI 653
A +K +I ++ ++ E L D ILV+ G +
Sbjct: 433 LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IEL +L YG L +L I+ G +IG+VGR G+GKSTL++ + +EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1157 ID 1158
Sbjct: 59 WG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--MTALANKTVIFVTH 634
LSGGQKQRV +A L DI +LD+ S +D G E + + TV+ +TH
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDP-RGRREVLETVRQLKEQKGITVLSITH 199
Query: 635 QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
++ AD ++V+ +G I++ G +++ ++G
Sbjct: 200 DLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHM 233
|
Length = 279 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPAC-GRIIIDN--IDISTIGLHDLRSRLGIIPQD 1180
G+ +G+ G G+G++ L+QALF G + I+ +DI +R+ + ++P+D
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPED 344
Query: 1181 -------PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQ---KLETPVLEN 1230
P L G L L+ + +A ++L I + K +P L
Sbjct: 345 RKRHGIVPILGVGK-NITLSVLKSFCFKMRIDA--AAELQIIGSAIQRLKVKTASPFLPI 401
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD-CTVCTIA 1289
G S G +Q L + LL R+L+LDE T VD I K+I ++ + ++
Sbjct: 402 G-RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460
Query: 1290 HRIPTVID-SDLVLVLSDGRV 1309
+ V+ SD VLV+ +G++
Sbjct: 461 SELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 1100 IDLKVRYGE-----NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
++ K + G+ NL L GIT F GR+G+GK++LI A+ L P GR
Sbjct: 4 LNFKQQLGDLCLTVNLTLPAQGITAIF---------GRSGAGKTSLINAISGLTRPQKGR 54
Query: 1155 IIIDN---IDI-STIGLHDLRSRLGIIPQDPNLF-EGTIRCNLDPLEEHSDREIWEALDK 1209
I+++ D I L + R+G + QD LF +R NL S
Sbjct: 55 IVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVA------- 107
Query: 1210 SQLGDIVR--GKDQKLET-PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
Q IV G + L+ P +G G++Q V++GRALL +L++DE AS+D
Sbjct: 108 -QFDKIVALLGIEPLLDRYPGSLSG-----GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 47/216 (21%)
Query: 485 VCGMVG---SGKSSLLSCILGEIPKISGEVRLCGTA-------------AYVSQSAWIQS 528
V G++G SGKS+LL + P GE+ L AY+ Q
Sbjct: 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98
Query: 529 G-NIEENILFG-----------SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN 576
G + E + G D+ K ++ I LK +H R ++
Sbjct: 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP----LAH--------RLVD 146
Query: 577 -LSGGQKQRVQLARALYQDADIYLLDDPFSAVD-AHTGSELFKEYIMTALANKTVIFVTH 634
LSGG++QR +A + QD+ LLD+P SA+D AH L + ++ TVI V H
Sbjct: 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
Query: 635 QVEFLPAA---DFILVLKEGRIIQAGKYDDLLQAGT 667
+ AA D+++ L+ G +I G +L++ T
Sbjct: 207 DINM--AARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
Length = 265 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IEPAC--GRIII--DNIDISTI 1165
VLH + K +G +G GKST ++ L +L IE G I N I
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNL--DPLEEH-SDREIWE-----ALDKSQLGDIVR 1217
+LR+R+G++ Q P FE +I N+ P +DR+I E +L + L D V+
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
K G+ S GQ+Q + + RA+ + +L++DE T+++D I+++I
Sbjct: 217 DDLDKA-------GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269
Query: 1278 TEFKDCTVCTIAHRI 1292
K ++ + H +
Sbjct: 270 ELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 35/201 (17%)
Query: 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ- 1179
+ IGI+G G GK+T I+ L +++P G I I+ +S PQ
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS------------YKPQY 69
Query: 1180 -DPNLFEGTIRCNL-DPLEEHSDREIW--EALDKSQLGDIVRGKDQKLETPVLENGDNWS 1235
+ +EGT+R L ++ + E Q+ I+ D+++ S
Sbjct: 70 IKAD-YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL---DREVPE--------LS 117
Query: 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIP 1293
G+ Q V++ L K A I +LDE +A +D + K+IR E + T + H I
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI- 176
Query: 1294 TVID--SDLVLVLSDGRVAEF 1312
+ID +D ++V +G +
Sbjct: 177 IMIDYLADRLIVF-EGEPSVN 196
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 15/228 (6%)
Query: 1087 PPSSWPENGTIELIDLKVRYGE---NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQA 1143
S +IEL D+ + + L I G + IVG G GKSTL +
Sbjct: 331 HDKSV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387
Query: 1144 LFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREI 1203
L P G I++D +S D R I D +LF+ I D E S
Sbjct: 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI--GPDEGEHASLDNA 445
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
+ L + ++ D V+ +D T S GQ++ ++L A L+ IL+ DE A
Sbjct: 446 QQYLQRLEIADKVKIEDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAAD 500
Query: 1264 VDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
D A + + + K T+ I+H +D ++ L+ G +
Sbjct: 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 31/198 (15%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTI 1188
++G G+GKSTL++ L + EP G I I+NI+ + + H L ++LGI G I
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGI---------GII 85
Query: 1189 RCNLDPLEEHSDRE---IWEALDKSQLG-DIVRGKDQKLETPVL-----------ENGDN 1233
L ++E + E I L K G +I+ ++ ++ ++ E N
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN 145
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASV-DTATDNL--IQKIIRTEFKDCTVCTIAH 1290
S+ +Q++ + + L+ A+++++DE T+S+ + D L I +R E + I+H
Sbjct: 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT--AIVYISH 203
Query: 1291 RIPTVID-SDLVLVLSDG 1307
++ + D V+ DG
Sbjct: 204 KLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVI 630
R S G +Q+V +ARAL D + LLD+P + +D + +E+I L K ++
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFI-RQLRALGKCIL 190
Query: 631 FVTH---QVEFLPAADFILVLKEGRIIQAG 657
F TH +VE L D ++VL GR++ G
Sbjct: 191 FSTHIMQEVERL--CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL---------RSRL 1174
G+ +GIVG +GSGKSTL+ L + P G + + L+ L R+
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 1175 GIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKD---QKLETPVLENG 1231
G + Q+P +G +R + +R + A+ G+I +++E
Sbjct: 89 GFVHQNPR--DG-LRMRVSAGANIGERLM--AIGARHYGNIRATAQDWLEEVEIDPTRID 143
Query: 1232 D---NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD--CTVC 1286
D +S G +Q + + R L+ + R++ +DE T +D + + ++R +D V
Sbjct: 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203
Query: 1287 TIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLED 1321
+ H + + + +LV+ GRV E ++L+D
Sbjct: 204 IVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 40/220 (18%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525
L GIS +++G V G G+GK++ L + G + SGEVR+ G + + +
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF 92
Query: 526 IQSGNIEENILFG---------SPMD------------KAKYKKVIHACSLKKDLELFSH 564
++ I ++FG +D A++KK + S DLE
Sbjct: 93 LR--RI--GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD 148
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
R LS GQ+ R ++A AL + +I LD+P +D + + ++
Sbjct: 149 -----TPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI-RNFLKEYN 200
Query: 625 ANK--TVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661
+ TV+ +H ++ + A A +LV+ +GR++ YD
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL----YDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 56/245 (22%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG--EIPKISGE----VRLCGTAAYVSQS 523
L IS ++ G + + G G+GKS L+ + G + SG V LC YV +
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 524 AWI-----QSGNI--EENILFGSPMDKAKY--KKVIHACSLKKDLELFSHGDQTII---- 570
+ + G E + F + DK + +K I A L++ L+ GD T++
Sbjct: 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRI-AIMLQRTFALY--GDDTVLDNVL 132
Query: 571 ---------GDRGI---------------------NLSGGQKQRVQLARALYQDADIYLL 600
G + +LSGG+KQRV LAR L ++ ++L
Sbjct: 133 EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLA 192
Query: 601 DDPFSAVDAHTGSELFKEYIMTALANK--TVIFVTHQVEFLP-AADFILVLKEGRIIQAG 657
D+P +D T ++L + A+ +++ +H E + +D + L+ G I + G
Sbjct: 193 DEPTGTLDPQT-AKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEG 251
Query: 658 KYDDL 662
D++
Sbjct: 252 TPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 17/201 (8%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT----AAYVSQSAW 525
++ IS+ V + + G G+GKS+LL I G + SGE+ G +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75
Query: 526 IQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI-NLSGGQKQR 584
I+S + EN+ + + K + + E+ + D T G + S G KQR
Sbjct: 76 IESPPLYENL---TARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQR 132
Query: 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--TVIFVTH---QVEFL 639
+ +A AL + +LD+P + +D EL + ++ + + TVI +H +V+ L
Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRE--LIRSFPEQGITVILSSHILSEVQQL 190
Query: 640 PAADFILVLKEGRIIQAGKYD 660
AD I ++ EG + GK +
Sbjct: 191 --ADHIGIISEGVLGYQGKIN 209
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII---DNIDISTIGLHDLRSRLGIIPQD 1180
G+ +G+VG +G GKST +A+ L++ G + D + + +RS + +I QD
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106
Query: 1181 PNLFEGTIRCNL-----DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN-- 1233
P L R + +PL + + L + ++ D V K L+ +L N N
Sbjct: 107 P-LASLNPRMTIGEIIAEPLRTYHPK-----LSRQEVKDRV--KAMMLKVGLLPNLINRY 158
Query: 1234 ---WSVGQRQLVSLGRALLKQARILVLDEATASVDTATD----NLIQKIIRTEFKDCTVC 1286
+S GQ Q + + RAL+ + ++++ DE +++D + NL+Q++ R ++
Sbjct: 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLI 216
Query: 1287 TIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314
IAH + V SD VLV+ G E T
Sbjct: 217 FIAHDLAVVKHISDRVLVMYLGHAVELGT 245
|
Length = 331 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-07
Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHDLRSRLGIIPQD 1180
G+ + +VG +GSGKST +AL RL+E G II + I T+ L LR + I QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1181 PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQK------LETPVLENGDNW 1234
P +LDP + D I E L L GK LE L W
Sbjct: 410 P-------YASLDPRQTVGD-SIMEPLRVHGLLP---GKAAAARVAWLLERVGLLPEHAW 458
Query: 1235 ------SVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
S GQRQ + + RAL ++++ DEA +++D +
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
Length = 623 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH---TGSELFKEYIMTALANKTVIF 631
I+LSGG+ QRV +A AL ++A YL D+P + +D + + KT +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE--GKKTALV 127
Query: 632 VTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
V H + L + + EG + G Y Q
Sbjct: 128 VEHDLAVLDYLSDRIHVFEG---EPGVYGIASQ 157
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC-----GRIIIDNIDI--STI 1165
+L G++ K I+G +G GKST ++ L R+ E GR+ N +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNL---------DPLEEHSDREIWEALDKSQLGDIV 1216
L+ LR ++ ++ PNLF ++ N+ P E D + AL + L D +
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE-IDDIVESALKDADLWDEI 140
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
+ K+ L+ S GQ+Q + + RAL + ++L++DE +D ++ +I
Sbjct: 141 K---HKIHKSALD----LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193
Query: 1277 RTEF--KDCTVCTIAHRIPTV 1295
++ + T+ ++H + V
Sbjct: 194 QSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 31/213 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLS------------CILGE------IPKISGEV 511
L+ S+ + V G GSGKS+++ I+G+ + KI
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 512 RLCGTAAYVSQSAWIQ--SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFS--HGDQ 567
RL V Q Q IE++I FG P++ + K+ + KK EL +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGENKQEAY----KKVPELLKLVQLPE 141
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN- 626
+ LSGGQK+RV LA + D + +LD+P +D G E F
Sbjct: 142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP-KGEEDFINLFERLNKEY 200
Query: 627 -KTVIFVTHQV-EFLPAADFILVLKEGRIIQAG 657
K +I VTH + + L AD ++V+ EG++I G
Sbjct: 201 KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 58/230 (25%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK---ISGEVRLCGTAAYVSQS 523
+ L G+++ V G A+ G GSGKS+L I+G PK GE+ G
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTEGEILFDG-------- 67
Query: 524 AWIQSGNIEENILFGSPMDKAK--------YKKVIHACSLKKDLELFS---HGDQTIIG- 571
E+IL SP ++A+ Y I + L G + I+
Sbjct: 68 ---------EDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE 118
Query: 572 -------------------DRGIN--LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
+R +N SGG+K+R ++ + L + + +LD+P S +D
Sbjct: 119 FIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI- 177
Query: 611 TGSELFKEYIMTAL-ANKTVIFVTHQVEFLPA--ADFILVLKEGRIIQAG 657
++ E I + V+ +TH L D + VL +GRI+++G
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 38/194 (19%)
Query: 1097 IELIDLKVRY--------GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148
++ IDLK Y E L L G++ GK + +VG +G GKSTL + L +I
Sbjct: 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLL-TMI 64
Query: 1149 E-PACGRIIIDNIDI---STIGLHDLRSRLGIIPQDPNLFEGTIRCNLDP-------LEE 1197
E P G + D+ LR ++ I+ Q+P +L+P LEE
Sbjct: 65 ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP-------YGSLNPRKKVGQILEE 117
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVL--ENGDNW----SVGQRQLVSLGRALLKQ 1251
I +L ++ + + L E+ D + S GQRQ +++ RAL+
Sbjct: 118 --PLLINTSLSAAERREKAL---AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLD 172
Query: 1252 ARILVLDEATASVD 1265
++V DE +++D
Sbjct: 173 PDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 45/245 (18%)
Query: 464 SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC--ILGEIP----KISGEVRLCG-- 515
+++P + G+S+ + RG +A+ G GSGKS L+C LG +P + +G V L G
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKP 70
Query: 516 ---------TAAYVSQ---SAW-----IQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
A + Q SA+ + + E + G P D A + A L+
Sbjct: 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA 130
Query: 559 LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
++ +SGG QR+ +A AL +A + D+P + +D + + +
Sbjct: 131 --------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-D 181
Query: 619 YIMTALANKT--VIFVTHQ---VEFLPAADFILVLKEGRIIQAGKYDDLLQA--GTDFNA 671
+ + + + ++ VTH V L AD + V+ GRI++ G + L A +
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARL--ADDVAVMSHGRIVEQGDVETLFNAPKHAVTRS 239
Query: 672 LVSAH 676
LVSAH
Sbjct: 240 LVSAH 244
|
Length = 254 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 57/232 (24%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV--------------------- 511
+S + G + + G GSGK++LL CI G + +G V
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 512 RLCGTA-AYVSQ----------SAWIQSGNIEENILFGSPMDK-AKYKKVIHACSLK--K 557
RL T +V Q SA GNI E M A++ I A + +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQVSA---GGNIGER-----LMAIGARHYGNIRAEAQDWLE 136
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
++E+ D I D SGG +QR+Q+AR L + +D+P +D + L
Sbjct: 137 EVEI----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 618 EYIMTALANK---TVIFVTHQ---VEFLPAADFILVLKEGRIIQAGKYDDLL 663
++ L + V+ VTH L AD ++V+K+G+++++G D +L
Sbjct: 193 --LLRGLVRELGLAVVIVTHDLAVARLL--ADRLMVMKQGQVVESGLTDRVL 240
|
Length = 258 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 52/237 (21%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
++L D+ Y +LP+ G+++ I+G +G+GKSTL+ + + PA G +
Sbjct: 2 LKLTDITWLY-HHLPMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 1157 IDNIDISTIGLHDL----RSRLGIIPQDPNLFEG-TIRCN----LDP-LEEHSDREIWEA 1206
++ D H R + ++ Q+ NLF T+ N L+P L+ ++ +
Sbjct: 58 LNGQD------HTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQ----- 106
Query: 1207 LDKSQLGDIVR--GKDQKLET-PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
+ +L I R G + L P +G GQRQ V+L R L+++ IL+LDE ++
Sbjct: 107 --REKLHAIARQMGIEDLLARLPGQLSG-----GQRQRVALARCLVREQPILLLDEPFSA 159
Query: 1264 VDTATDN----LIQKIIRTEFKDCTVCTIAH------RIPTVIDSDLVLVLSDGRVA 1310
+D A L+ ++ + + T+ ++H RI + LV++DGR+A
Sbjct: 160 LDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARI-----APRSLVVADGRIA 209
|
Length = 232 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 6e-07
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 30/171 (17%)
Query: 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI--IPQDP--- 1181
+GI G G+G+S L++A+ L +PA GRI+++ D+ R RLG+ +P+D
Sbjct: 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 1182 ------NLFEGTIRCNLDPLEEHSDREI--WEALDKSQLGDIVRGKDQKLE-------TP 1226
+L E + L H + LD+ + R ++ + P
Sbjct: 347 GLVLDLSLAENLV------LGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP 400
Query: 1227 VLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
+ S G +Q + L R L ++ +L+ + T +D I + +
Sbjct: 401 A----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLL 447
|
Length = 501 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 75/252 (29%)
Query: 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI 507
NV+ + E+ E S+ + L ++++V +G + + G GSGKS++ + +
Sbjct: 8 KNVSYKYESNE----ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 508 SGEVRLCGTAAYVSQSAW----------------IQSGNIEENILFG------------S 539
G+V + G ++ W I + +EE++ FG
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 540 PMDKA-------KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592
+D++ +Y++ HA L LSGGQKQRV +A L
Sbjct: 124 RVDESLKKVGMYEYRR--HAPHL---------------------LSGGQKQRVAIAGILA 160
Query: 593 QDADIYLLDDPFSAVDA-------HTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFI 645
+ + D+P + +D +T EL K+Y + T+I +TH +E AD I
Sbjct: 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI------TIILITHYMEEAVEADRI 214
Query: 646 LVLKEGRIIQAG 657
+V+ G+++ G
Sbjct: 215 IVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 52/251 (20%)
Query: 1112 LVLHGITCAFPG-------------GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
L L GI AFPG G+ + +VG G+GKST+++ L + G I+
Sbjct: 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYL 64
Query: 1159 NIDISTIGLHDLR-SRLGIIPQDPNLF-EGTIRCNLDPLEEHSDR-------EIWEALDK 1209
+++ G + + +GII Q+ NL + TI N+ E +R +++ DK
Sbjct: 65 GKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADK 124
Query: 1210 --SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT-ASVDT 1266
++L +R KL + S+G++Q+V + + L +++++++DE T A DT
Sbjct: 125 LLARLN--LRFSSDKLVGEL-------SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
Query: 1267 ATDNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGR------VAEFDTP-- 1315
T++L ++IR E K + I+HR+ + + D V V DG+ VA+
Sbjct: 176 ETESLF-RVIR-ELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSL 233
Query: 1316 -----GRLLED 1321
GR LED
Sbjct: 234 IEMMVGRKLED 244
|
Length = 501 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 443 LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-- 500
+ T I++ + + + L + + + A G G GKS+ L C+
Sbjct: 9 ADKKATATEIKMRARDVSVFYGEKQ-ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67
Query: 501 ---LGEIPKISGEVRLCGTAAY------VSQSAWI----QSGN-----IEENILFGSPM- 541
+ +++G++ L G Y V A + Q N I EN+ +G +
Sbjct: 68 MNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIH 127
Query: 542 ----DKAKYKKVIHACSLKKDLELFSHGDQTIIGDR----GINLSGGQKQRVQLARALYQ 593
KA+ +++ SL+K L+ + DR G LSGGQ+QR+ +ARA+
Sbjct: 128 GLARSKAELDEIVET-SLRK-AGLWEE-----VKDRLHEPGTGLSGGQQQRLCIARAIAV 180
Query: 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634
++ L+D+P SA+D +++ +E I N T++ VTH
Sbjct: 181 SPEVILMDEPCSALDPIATAKV-EELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 8e-07
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
VL+ I+ P G+ + ++G +GSGK+TL++ + L G I D+S LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 1173 RLGIIPQDPNLFE-----GTIRCNLDPLEEHS-------DREIWEALDKSQLGDIVRGKD 1220
++G + Q LF I L L ++ + L+ QL +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1221 QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--- 1277
+L S GQ+Q V+L RAL + +IL+LDE ++D +++ +R
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1278 TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
E K +V + + +D V+V+S G + + TP ++ + ++ F
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 63/247 (25%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP--------KISGEV------ 511
R L +S++++ G A+ G G+GKS+LL + G++ +++G+V
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 512 -------RLCGTAAYVSQSAWIQSG---NIEENILFGSPMDKAKYKKVIHACSL-KKDLE 560
RL A + Q+A Q + E +L G +Y A +L +D E
Sbjct: 73 LAAIDAPRLARLRAVLPQAA--QPAFAFSAREIVLLG------RYPHARRAGALTHRDGE 124
Query: 561 LFSH-----GDQTIIGDRGINLSGGQKQRVQLARALYQ---------DADIYLLDDPFSA 606
+ G ++G LSGG+ RVQ AR L Q LLD+P +A
Sbjct: 125 IAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA 184
Query: 607 VD-AH------TGSELFKEYIMTALANKTVIFVTHQVEFLPA--ADFILVLKEGRIIQAG 657
+D AH T L +++ + LA + H L A AD I +L +G I+ G
Sbjct: 185 LDLAHQHRLLDTVRRLARDWNLGVLA------IVHDPN-LAARHADRIAMLADGAIVAHG 237
Query: 658 KYDDLLQ 664
D+L
Sbjct: 238 APADVLT 244
|
Length = 272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 8e-07
Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVS 521
+ S RP + +++ A G G+GK++ LS + G +P SG V + G +
Sbjct: 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN 997
Query: 522 QSAWIQSGNI--EENILFGSPMDKAKYKKVIHACSLK-KDLELFSHGDQTIIGDRGI--- 575
A QS + + NILF + A++ ++ LK + E + ++ D G+
Sbjct: 998 LDAVRQSLGMCPQHNILFHH-LTVAEH--ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK 1054
Query: 576 ------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTV 629
+LSGG ++++ +A A DA + +LD+P S VD ++ ++ + ++ + +T+
Sbjct: 1055 RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTI 1113
Query: 630 IFVTHQV-EFLPAADFILVLKEGRIIQAG 657
I TH + E D I ++ +GR+ +G
Sbjct: 1114 IMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 9e-07
Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 38/251 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE ++ +G VLH I G+ + I+G +GSGKSTL++ + +L E G +I
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1157 IDNIDI--STIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGD 1214
+D + + + +R G++ Q LF AL+ G
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL-----------------TALENVMFGP 102
Query: 1215 I-VRG------KDQKLE----TPVLENGDNW----SVGQRQLVSLGRALLKQARILVLDE 1259
+ VRG + Q E + E ++ S GQ+Q V++ RAL + ++++ DE
Sbjct: 103 LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 1260 ATASVDTATDNLIQKIIRTEFKD-CTVCTIAHRIPTVIDSDLVLVLSD-GRVAEFDTPGR 1317
T+++D + + K+++ ++ T+ + H I L+ D GR+AE P
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQV 222
Query: 1318 LLEDKSSMFLK 1328
L+++ S L+
Sbjct: 223 LIKNPPSQRLQ 233
|
Length = 240 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAY----- 519
+ + + + + A G G GKS++L C L ++ G+V G Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 520 ----------VSQSAWIQSGNIEENILFGSPMD--KAKYKKVIHACSLKKDLELFSHGDQ 567
V Q +I +NI +G+ ++ K +++ SL++ D+
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-SLRQAALWDEVKDK 144
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+ G++LSGGQ+QR+ +ARA+ ++ L+D+P SA+D S L E +M L +
Sbjct: 145 --LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI--STLRIEELMHELKEQ 200
Query: 628 -TVIFVTHQVE 637
T+I VTH ++
Sbjct: 201 YTIIIVTHNMQ 211
|
Length = 264 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI-----DISTIGLHDL--RSRLGI 1176
+ G +G +G GKST++++L R+ + G ++ D+ G+ + R +G+
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93
Query: 1177 IPQDPNLFEGTIRCN------LDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
+ Q PN F +I N L+ + + AL + L D V+ K + +
Sbjct: 94 VFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVS 146
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G + S GQ+Q + + RA+ + +L+LDE +++D +++++ KD T+ + H
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTH 206
Query: 1291 RIPTVI 1296
+ I
Sbjct: 207 NMQQAI 212
|
Length = 261 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 41/224 (18%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------------- 517
GIS+ + RG + + G GSGKS+L +L IP GE+R G
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSRKEMRPLRR 363
Query: 518 --------AYVSQSAWIQSGNI-EENILFGSPM--DKAKYKKVIHACSLKKDLELFSHG- 565
Y S S + G I EE + P + ++VI A L G
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA--------LEEVGL 415
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMT 622
D SGGQ+QR+ +ARAL ++ LLD+P SA+D + +L ++ +
Sbjct: 416 DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD--LQ 473
Query: 623 ALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
+ +F++H + + A ++V+++G+I++ G + +
Sbjct: 474 QKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 1097 IELIDLKVRY--GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
+EL D++ Y GE VL GI+ G+ + IVG +GSGKSTL+ L L +P G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1155 IIIDNIDISTIGLHDL----RSRLGIIPQD---------------PNLFEGTIRCNLDPL 1195
+ D++T+ L R G I Q P ++ G R
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER------ 118
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
++ R E L + L D V + +L S GQ+Q VS+ RAL+ +++
Sbjct: 119 KQRLLRAQ-ELLQRLGLEDRVEYQPSQL-----------SGGQQQRVSIARALMNGGQVI 166
Query: 1256 VLDEATASVDT 1266
+ DE T ++D+
Sbjct: 167 LADEPTGALDS 177
|
Length = 648 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 33/216 (15%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL----- 1147
EN + D K N+ ++ + IT ++G +G GKST ++ L R+
Sbjct: 11 ENLNLFYTDFKALNNINIKILKNSIT---------ALIGPSGCGKSTFLRTLNRMNDLVE 61
Query: 1148 ---IEPACGRIIID--NIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDRE 1202
IE G +I + NI + + +LR ++G++ Q PN F +I N+ +
Sbjct: 62 GIKIE---GNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS-----YGPK 113
Query: 1203 IWEALDKSQLGDIVRGKDQK------LETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
I DK +L +IV +K ++ + N + S GQ+Q + + R L + +++
Sbjct: 114 IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL 173
Query: 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
+DE T+++D + I+++I + T+ + H +
Sbjct: 174 MDEPTSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 32/213 (15%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
L GI+ G+ +G +G G+GK+T ++ L L++P G + + +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLR 94
Query: 1173 RLGII------------PQDPNLFEGTIRCNLDPLEEHSDR-EIWEALDKSQLGDIVRGK 1219
R+G++ D I +L P E+ E LD L ++
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLD---LEEL---- 146
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
L+TPV S+GQR + ALL + IL LDE T +D I+ ++
Sbjct: 147 ---LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 1280 FKD--CTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
++ TV +H + + + VLV+ GR+
Sbjct: 200 NRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIP--QDPNLFEG 1186
I+G G+GK+T++ + P G ++ D++ + H + +R GI Q P +FE
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAGIGRKFQKPTVFEN 91
Query: 1187 -TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW-----SVGQRQ 1240
T+ NL+ L D+ ++ +L + ++ LET L + + S GQ+Q
Sbjct: 92 LTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ 150
Query: 1241 LVSLGRALLKQARILVLDEATASVDTA----TDNLIQKIIRTEFKDCTVCTIAHRIPTVI 1296
+ +G L++ ++L+LDE A + T L++ + +V + H + V
Sbjct: 151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA----GKHSVVVVEHDMEFVR 206
Query: 1297 D-SDLVLVLSDGRV 1309
+D V VL G V
Sbjct: 207 SIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 1e-06
Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 54/231 (23%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSA 524
+ L IS+ G ++ V G+ G+GKS+LL + G + GE R Y+ Q
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEP 79
Query: 525 WIQS-----GNIEE---------------NILFGSPMDK--------AKYKKVIHACS-- 554
+ N+EE + P + +++I A
Sbjct: 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW 139
Query: 555 -LKKDLELFSH------GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
L LE+ D + LSGG+++RV L R L + D+ LLD+P + +
Sbjct: 140 DLDSQLEIAMDALRCPPWDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHL 194
Query: 608 DAHTGSEL---FKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRII 654
DA + + L +Y TV+ VTH FL A +IL L GR I
Sbjct: 195 DAESVAWLEQFLHDY------PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239
|
Length = 556 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 44/197 (22%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAYVSQSAWIQ 527
ISM +++ A+ G G GKS+ L I L + GE+ G I
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN--------IL 91
Query: 528 SGNI-------EENILFG--SPMDKAKYKKVIHAC-------------SLKKDLELFSHG 565
NI E ++F +P K+ Y + HA +++ L +
Sbjct: 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW 151
Query: 566 DQTIIGDR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIM 621
D+ + DR ++LSGGQ+QR+ +AR L + LLD+P SA+D + +++ E ++
Sbjct: 152 DE--VKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI--EELI 207
Query: 622 TALANK-TVIFVTHQVE 637
T L + ++I VTH ++
Sbjct: 208 TELKEEYSIIIVTHNMQ 224
|
Length = 268 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 37/210 (17%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---- 517
Y + L+ IS + G + G G GKS+LL + I SG + G
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 518 ---------AYVSQSAWIQSGNIEENILF------GSPMDKAKYKKVIHACSLKKDLELF 562
+Y +Q+ + + +N++F P DLE F
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAI----------FLDDLERF 124
Query: 563 SHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG---SELFKE 618
+ D + + I LSGG+KQR+ L R L + LLD+ SA+D +E+
Sbjct: 125 ALPDTIL--TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182
Query: 619 YIMTALANKTVIFVTHQVEFLPAADFILVL 648
Y+ N V++VTH + + AD ++ L
Sbjct: 183 YVRE--QNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 32/202 (15%)
Query: 461 WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYV 520
WY L I++ + A+ G G GKS+ + L + ++ V+ G Y
Sbjct: 33 WYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKILYR 89
Query: 521 SQSAWIQSGNIEE-----NILFGSP-------MDKAKYKKVIHACSLKKDLELFSHGDQT 568
Q+ + +S ++EE ++F P D Y IH KK L+ +++
Sbjct: 90 DQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIV--EKS 147
Query: 569 IIG--------DR----GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
+ G DR LSGGQ+QR+ +AR L + D+ L+D+P SA+D S L
Sbjct: 148 LRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPI--STLK 205
Query: 617 KEYIMTALANK-TVIFVTHQVE 637
E ++ L ++I VTH ++
Sbjct: 206 VEELVQELKKDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN-KTVIFVTHQ 635
LSGGQ+QR+ +ARAL + +I L+D+P SA+D + + + E +MT L T+I VTH
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTDLKKVTTIIIVTHN 206
Query: 636 V-EFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
+ + +D G +++ G D L D
Sbjct: 207 MHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR---------LCG-- 515
P L +S+ V+ G VA+ G G+GKS+LL + SG + L
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 516 ----------TAAYVSQ----SAWIQSGNI--EENILFGSPMDKAKYKKVIHACSLKKDL 559
T YVSQ + + + E + G P + A+ + L
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE 140
Query: 560 ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
L+ T SGG++QRV +AR D I LLD+P +++DA
Sbjct: 141 RLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 35/169 (20%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR---------LCG--- 515
P L +S+ V+ G V + G GSGKS+LL + G++ L
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 516 ---------TAAYVSQ----SAWIQSGNI--EENILFGSPMDKAKYKKVIHACSLKKDLE 560
T YVSQ + + ++ E + G P + A+ K L
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
L+S T SGG++QRV +AR D I LLD+P +++DA
Sbjct: 145 LWSLAPAT--------FSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
|
Length = 235 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV--------------R 512
R + +S+ V+ G V + G G+GK++ ++G +P+ +G + R
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75
Query: 513 LCGTAAYVSQSAWI-QSGNIEENIL--FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
Y+ Q A I + ++ +N++ D + ++ A L ++ + H ++
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-EHLRDSM 134
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-- 627
G +LSGG+++RV++ARAL + LLD+PF+ VD + ++ + I+ L +
Sbjct: 135 ----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR--IIEHLRDSGL 188
Query: 628 TVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLLQ 664
V+ H V E L + ++ +G +I G ++LQ
Sbjct: 189 GVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+ I+ P G+ G++G G+GK+T + + L+EP G I + +S +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKN 72
Query: 1173 RLGIIPQDPNLF-----EGTIRCNLDPLEEHSDREIWEALD---KSQLGDIVRGKDQKLE 1224
R+G +P++ L+ E ++ L L+ EI + L + +IV K +K++
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLK-YLAELKGMPKAEIQKKLQAWLERL--EIVGKKTKKIK 129
Query: 1225 TPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD-- 1282
S G +Q + A++ + +L+LDE + +D L++ I E K+
Sbjct: 130 E--------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIF-ELKEEG 180
Query: 1283 CTVCTIAHRIPTVID-SDLVLVLSDGRV 1309
T+ +HR+ V + D +L+L G+
Sbjct: 181 ATIIFSSHRMEHVEELCDRLLMLKKGQT 208
|
Length = 300 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 29/197 (14%)
Query: 484 AVCGMVGSGKSSLLSCI--LGE-IP-----------------KISGEVRLCGTAAYVSQS 523
A+ G G GKS+ L I + + IP K + EV L V Q
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 524 AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDR----GINLSG 579
+I +NI +G + KK + ++K L + D+ + DR + LSG
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEI-VEKSLRKAALWDE--VSDRLDKNALGLSG 185
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFL 639
GQ+QR+ +AR L + +I LLD+P SA+D +++ ++ I + T++ VTH ++
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQELRGSYTIMIVTHNMQQA 244
Query: 640 P-AADFILVLKEGRIIQ 655
+D+ + EG +++
Sbjct: 245 SRVSDYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 29/175 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI---GLHD 1169
VLH ++ + G+ + IVG +GSGKSTL+ L L P G +I + +S + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1170 LRSR-LGIIPQ------DPNLFEGT----IRCNLDPLEEHSD-REIWEALDKSQLGDIVR 1217
LR++ LG I Q D E + P E +S E+ A+ R
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----R 138
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLI 1272
+ E S G+RQ V++ RAL+ R+++ DE T ++D + I
Sbjct: 139 ANHRPSEL---------SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
|
Length = 233 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 52/201 (25%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L + + + + V V G+ GSGKS+L++ E SG+ RL
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN----EGLYASGKARLISF------------- 53
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN----------LSG 579
+ K K+I L Q +I D G+ LSG
Sbjct: 54 -----------LPKFSRNKLIFIDQL-----------QFLI-DVGLGYLTLGQKLSTLSG 90
Query: 580 GQKQRVQLARALYQDAD--IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVE 637
G+ QRV+LA L+ + +++LD+P + + ++L + TVI + H ++
Sbjct: 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150
Query: 638 FLPAADFILVLKEGRIIQAGK 658
L +AD+I+ G GK
Sbjct: 151 VLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 34/217 (15%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
I + D+ V + N L + PGG +VG GSGKSTL +AL + A G+I
Sbjct: 6 GIVVNDVTVTW-RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 1156 IIDNIDISTIGLHDLRSRL-GIIPQD-------PNLFEGTIRCN-------LDPLEEHSD 1200
I L+ L +PQ P L E + L ++
Sbjct: 65 SILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
+ + AL + + + + +L S GQ++ V L RA+ +Q ++++LDE
Sbjct: 121 QIVTAALARVDMVEFRHRQIGEL-----------SGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 1261 TASVDTATDNLIQKIIRTEFKD--CTVCTIAHRIPTV 1295
VD T+ I ++R E +D T+ H + +V
Sbjct: 170 FTGVDVKTEARIISLLR-ELRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLC---GTAAYVSQSAWIQSG 529
+S +V G + +CG G GKSSL ILGE+ + G G YV Q ++ G
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 530 NIEENILFGSPMDKAKYK-KVIHACSLKKDLE-------LFSHGDQTIIGDRGINLSGGQ 581
+ + I++ P K + + L++ L+ L G + + D LSGG+
Sbjct: 530 TLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGE 587
Query: 582 KQRVQLARALYQDADIYLLDDPFSAV 607
KQR+ +AR Y +LD+ SAV
Sbjct: 588 KQRIAMARLFYHKPQFAILDECTSAV 613
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 37/220 (16%)
Query: 464 SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTA-AYVS 521
+ L+ +S+ + G VA+ G G GKS+L ++G E P G V G A ++
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLN 80
Query: 522 QSAW--------------IQSGNIEENI--LFGSPM------DKAKYKKVIHACSLKKDL 559
++ I + N + + + P+ DKA+ ++ A + + +
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE--RLARASEMLRAV 138
Query: 560 ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
+L D +++ R LSGGQ QRV LARAL + + +LD+ S +D + + +
Sbjct: 139 DL----DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-- 192
Query: 620 IMTALANKT---VIFVTHQVEFLPA-ADFILVLKEGRIIQ 655
++ L + +F+TH + + ++V+ G+I++
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 36/185 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT---AAYVSQ--SA 524
+ S +V RG ++A+ G G GK++LL +LG++ SG + CGT AY Q +
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH-CGTKLEVAYFDQHRAE 393
Query: 525 WIQSGNIEENILFGSPMDKAKYKKVI-------HACSLKKDLELFSHGDQTIIGDRGIN- 576
+ +N+ A+ K+ + H +D LF R +
Sbjct: 394 LDPEKTVMDNL--------AEGKQEVMVNGRPRHVLGYLQDF-LFH-------PKRAMTP 437
Query: 577 ---LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
LSGG++ R+ LAR + +++ +LD+P + +D T EL +E + TV+ V+
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-LELLEE--LLDSYQGTVLLVS 494
Query: 634 HQVEF 638
H +F
Sbjct: 495 HDRQF 499
|
Length = 635 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 31/213 (14%)
Query: 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LG 502
N+ I ++N + + + + + RG A+ G G GKS++L + L
Sbjct: 10 KNIIISLQNVTISYGTFEA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLI 66
Query: 503 EIPKISGEVRLCGTAAY---------------VSQSAWIQSGNIEENILFGSPMD--KAK 545
E + G V GT Y V Q +I ENI FG+ ++
Sbjct: 67 EGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGD 126
Query: 546 YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFS 605
+++ SL+K D+ + + G +LSGGQ+QR+ +AR + + ++ L+D+P S
Sbjct: 127 MDELVER-SLRKAAVWDECKDK--LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 606 AVDAHTGSELFKEYIMTALA-NKTVIFVTHQVE 637
A+D S L E M L N T++ VTH ++
Sbjct: 184 ALDPI--STLKIEETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF 631
++G LSGGQ+QR+ +ARA+ D+ L+D+P SA+D + ++ +E + T+I
Sbjct: 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV-EELCLELKEQYTIIM 215
Query: 632 VTHQVE 637
VTH ++
Sbjct: 216 VTHNMQ 221
|
Length = 274 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 24/220 (10%)
Query: 463 PSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQ 522
S + IS ++ +G V G G+GKS+ L + G + SG+VR+ G + +
Sbjct: 33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR 92
Query: 523 SAWIQSGNI----------EENILFGSPMDKAKYKKVIHACSLKKDLELFSH--GDQTII 570
+++S + + L + K Y+ I + L+ + + +
Sbjct: 93 EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE--IPDDEFAERLDFLTEILDLEGFL 150
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTALANK 627
LS GQ+ R +LA AL + LD+P +D + + E KEY
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY--NEERQA 208
Query: 628 TVIFVTH---QVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
TV+ TH + L D +L++ +G+++ G L +
Sbjct: 209 TVLLTTHIFDDIATLC--DRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 5e-06
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 45/201 (22%)
Query: 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ--DPNLF 1184
IGIVG G GK+T + L +++P G + + + IS PQ P+ +
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKIS------------YKPQYIKPD-Y 413
Query: 1185 EGTIRCNLDPLEEHSDREIWEALDKSQL-GDIVR--GKDQKLETPVLENGDNWSVGQRQL 1241
+GT+ L R I + L S +I++ ++ L+ V + S G+ Q
Sbjct: 414 DGTVEDLL--------RSITDDLGSSYYKSEIIKPLQLERLLDKNV----KDLSGGELQR 461
Query: 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSD 1299
V++ L + A + +LDE +A +D + K IR E ++ T V+D D
Sbjct: 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATAL--------VVDHD 513
Query: 1300 LVLV--LSDGRVAEFD-TPGR 1317
+ ++ +SD R+ F+ PG+
Sbjct: 514 IYMIDYISD-RLMVFEGEPGK 533
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 48/240 (20%)
Query: 1080 PVIEDSRPPSSWPENGT-IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKS 1138
+ + +PP T +E DLK YG+ L + G+ IGI+G G GK+
Sbjct: 325 EIEFEEKPPRDDKARDTLVEYPDLKKTYGD-FKLEVEEGE--IYDGEVIGILGPNGIGKT 381
Query: 1139 TLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ--DPNLFEGTIRCNLDPLE 1196
T ++ L +I+P G ++ +S PQ P+ ++GT+ L
Sbjct: 382 TFVKLLAGVIKPDEGSEE--DLKVS------------YKPQYISPD-YDGTVEDLL---- 422
Query: 1197 EHSDREIW-------EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249
+ R + E + L D+ LE PV D S G+ Q V++ AL
Sbjct: 423 RSAIRSAFGSSYFKTEIVKPLNLEDL-------LERPV----DELSGGELQRVAIAAALS 471
Query: 1250 KQARILVLDEATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID--SDLVLVLS 1305
++A + +LDE +A +D ++ K+IR E + T + H I +ID SD ++V
Sbjct: 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530
|
Length = 591 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-06
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA- 625
+T++G LSGGQKQR+ +ARA+ ++ I +LD+ S++D SE + + L
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD--NKSEYLVQKTINNLKG 627
Query: 626 --NKTVIFVTHQVEFLPAADFILVL 648
N+ I + H++ + A+ I VL
Sbjct: 628 NENRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 37/223 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAY----- 519
L +++ + + A+ G G GKS+ + + L + G + L G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 520 ----------VSQSAWIQSGNIEENILFGSPM----DKAKYKKVIHACSLKKDL---ELF 562
V Q +I +N+ +G + D+ ++ + SLK E+
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEE-SLKAAALWDEVK 137
Query: 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
D++ +G LSGGQ+QR+ +AR + ++ L+D+P SA+D + +++ E ++
Sbjct: 138 DKLDKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI--EDLIH 190
Query: 623 ALANK-TVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDLL 663
L T++ VTH + + + + G II++G D +
Sbjct: 191 KLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-06
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 47/187 (25%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+L I+ +F G KIG++G G+GKSTL++ I+ +D G
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLR-------------IMAGVDKEFNGEARPAP 66
Query: 1173 --RLGIIPQDP----------NLFEGT--IRCNLDPLEEHSDR----------------E 1202
++G +PQ+P N+ EG I+ LD E S + E
Sbjct: 67 GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAE 126
Query: 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGD----NWSVGQRQLVSLGRALLKQARILVLD 1258
+ E +D + D+ R + ++ D S G+R+ V+L R LL + +L+LD
Sbjct: 127 LQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186
Query: 1259 EATASVD 1265
E T +D
Sbjct: 187 EPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAV-DAHTG--SELFKEYIMTALANK-TVIF 631
LS GQKQ +++ L QD + LLD+P + + DA T +EL K LA K +++
Sbjct: 147 LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS-----LAGKHSILV 201
Query: 632 VTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662
V H + F+ AD + VL EG ++ G D++
Sbjct: 202 VEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 46/224 (20%)
Query: 1116 GITCAFPGGKKI-------------GIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDI 1162
I+ +FPG K + ++G G+GKSTL++ LF + + G I+ +I
Sbjct: 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62
Query: 1163 S-TIGLHDLRSRLGIIPQDPNLF-EGTIRCNL------------DPLEEHSD-REIWEAL 1207
L + + ++ Q+ NL + ++ N+ D + + D + I++ L
Sbjct: 63 DFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL 122
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
D DI D + SV Q Q++ + +A A+I+++DE T+S+
Sbjct: 123 DI----DI----DPR------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168
Query: 1268 TDNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGR 1308
N + IIR + K+ C + I+H++ + D + +L DG+
Sbjct: 169 EVNHLFTIIR-KLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 46/178 (25%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST-------- 1164
VL+ ++ + G+ + ++GR+G GKSTL + L L P+ G + ++
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1165 ------------IGLHDLRSRLGIIPQDPNLFEGTIR--CNLDPLE-EHSDREIWEA--L 1207
I + R + I ++P +R +LD E E+ A L
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREP------LRHLLSLDKAERLARASEMLRAVDL 140
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
D S L K + S GQ Q V L RAL + ++L+LDEA +++D
Sbjct: 141 DDSVL--------DKRPPQL-------SGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-TVIFV 632
G LSGGQ+QR+ +ARA+ + D+ L+D+P SA+D S L E ++ L T++ V
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI--STLAIEDLINELKQDYTIVIV 203
Query: 633 THQVE 637
TH ++
Sbjct: 204 THNMQ 208
|
Length = 258 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-05
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT 516
L +S V G + G G+GK++L + I G + SG V G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE 62
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 50/227 (22%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
L I G+ + ++G +G GK+TL+ + + G I +D + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-----A 70
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE-ALDKSQLGDIVRG--KDQKLETPV-- 1227
G++ Q+ L W D G + G K Q+LE
Sbjct: 71 ERGVVFQNEGLLP------------------WRNVQDNVAFGLQLAGVEKMQRLEIAHQM 112
Query: 1228 -----LENGDN---W--SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
LE + W S GQRQ V + RAL ++L+LDE ++D T +Q ++
Sbjct: 113 LKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL 172
Query: 1278 TEFKDC--TVCTIAHRIPTVI--DSDLVLVLSDGRVAEFDTPGRLLE 1320
+++ V I H I + ++LVL LS G PGR++E
Sbjct: 173 KLWQETGKQVLLITHDIEEAVFMATELVL-LSPG-------PGRVVE 211
|
Length = 255 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 32/208 (15%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155
+I + L YG L ++ G+ +G +G G+GKST ++ + + P G +
Sbjct: 2 SIRVSSLTKLYGTQN--ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 1156 IIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDI 1215
+ D+ +++ +G +P+ L+ D + E L I
Sbjct: 60 QVCGEDVLQNPK-EVQRNIGYLPEHNPLYL--------------DMYVREYLQFI--AGI 102
Query: 1216 VRGKDQKLETPVLE-------------NGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262
K Q L+ V E S G RQ V L +AL+ ++L+LDE T
Sbjct: 103 YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
Query: 1263 SVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
+D I+ +I+ KD T+ H
Sbjct: 163 GLDPNQLVEIRNVIKNIGKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 28/240 (11%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI--LGEI---PK 506
I+I F ++ L I+M A+ G G GKS+LL + + +I +
Sbjct: 5 IKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 507 ISGEVRLCGTAAY---------------VSQSAWIQSGNIEENILFGSPMDKAKYKKVIH 551
+ G V L Y V Q +I +N+ FG M + +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 552 ACSLKKDLELFSHGDQTI--IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
++K L + D+ + G+ LSGGQ+QR+ +AR L + ++ L+D+P SA+D
Sbjct: 122 EV-VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 610 HTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQAGTD 668
+ +E + N T+ VTH ++ A+D+ L G +++ G+ ++ D
Sbjct: 181 -VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRD 239
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 58/223 (26%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI----EPAC 1152
IE +L +G+ L ++ ++ P G +G++G G+GKST LFR+I +P
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKST----LFRMITGQEQPDS 376
Query: 1153 GRIII-DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQ 1211
G I I + + ++ + +SR + P + ++E EI LD Q
Sbjct: 377 GTIKIGETVKLAYVD----QSRDALDP-NKTVWE----------------EISGGLDIIQ 415
Query: 1212 LGDI------------VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
LG +G DQ+ + L S G+R V L + L +L+LDE
Sbjct: 416 LGKREVPSRAYVGRFNFKGSDQQKKVGQL------SGGERNRVHLAKTLKSGGNVLLLDE 469
Query: 1260 ATASVDTATDNLIQKIIRTEFKDCTVCTIAH------RIPTVI 1296
T +D T +++ + EF C V I+H RI T I
Sbjct: 470 PTNDLDVETLRALEEAL-LEFAGCAV-VISHDRWFLDRIATHI 510
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 62/250 (24%), Positives = 120/250 (48%), Gaps = 34/250 (13%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
+ + L ++ R+G N V+ + G + ++G +G GK+T+++ + L +P
Sbjct: 3 QKNFVVLKNITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 1153 GRIIIDNIDI--STIGLHDLRSRLGIIPQDPNLF-EGTIRCNLD--------PLEEHSDR 1201
G+I ID D+ +I D + ++ Q LF ++ N+ P EE R
Sbjct: 61 GQIFIDGEDVTHRSIQQRD----ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR 116
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ EAL +L D+ +D+ + D S GQ+Q V+L RAL+ + ++L+ DE
Sbjct: 117 -VKEAL---ELVDLAGFEDRYV--------DQISGGQQQRVALARALILKPKVLLFDEPL 164
Query: 1262 ASVDTATDNLIQKIIRTEFK---DCTVCTIAH-RIPTVIDSDLVLVLSDGRVAEFDTPGR 1317
+++D +++ IR E + + T + H + SD V+V++ G++ + +P
Sbjct: 165 SNLDANLRRSMREKIR-ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223
Query: 1318 LLEDKSSMFL 1327
L +S F+
Sbjct: 224 LYRQPASRFM 233
|
Length = 351 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 43/212 (20%)
Query: 1128 GIVGRTGSGKSTLIQALFRL--IEPA---CGRIII--DNIDI--STIGLHDLRSRLGIIP 1178
++G +G GKST ++ R+ + P G II+ DN++I + ++R R+ ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 1179 QDPNLFEGTI---------------RCNLDPLEEHSDRE--IWEALDKSQLGDIVRGKDQ 1221
Q PN F +I R L+ E++ R +W+ + K +LGD+
Sbjct: 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-KDRLGDLAF---- 160
Query: 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK 1281
N S GQ+Q + + RAL IL+ DE T+++D I+++I
Sbjct: 161 -----------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209
Query: 1282 DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312
T+ + H + SD + G + EF
Sbjct: 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241
|
Length = 265 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 23/151 (15%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL 1183
G+ ++G +G GKSTL++ L +P G+I++D +D+S + + + + ++ Q L
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QRPINMMFQSYAL 102
Query: 1184 F-----EGTIRCNLD----PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234
F E I L P E + R + E L + + + K +L
Sbjct: 103 FPHMTVEQNIAFGLKQDKLPKAEIASR-VNEMLGLVHMQEFAKRKPHQL----------- 150
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVD 1265
S GQRQ V+L R+L K+ ++L+LDE ++D
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 73/278 (26%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 1059 ENKIISI----ERIYQYSQIPGEAPPVIEDSRPPSSW-PENGTIELID---LKVRYGENL 1110
E+ II++ E Y + P VI + R ++W P N I+ +D +R GE L
Sbjct: 232 EDDIITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEIL 291
Query: 1111 PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC-GRIIIDN--IDIST--- 1164
GI G G+G++ L+Q LF G I ID + I
Sbjct: 292 -----------------GIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334
Query: 1165 -----IGL--HDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVR 1217
I + D R R GI+P T+ LD S I +A + + + ++
Sbjct: 335 AIAQGIAMVPED-RKRDGIVPVMGVGKNITL-AALDRFTGGS--RIDDAAELKTILESIQ 390
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
K +P L S G +Q L + LL +IL+LDE T +D I K+I
Sbjct: 391 RLKVKTASPELAIA-RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449
Query: 1278 TEFKD-CTVCTIAHRIPTVID-SDLVLVLSDGRV-AEF 1312
+ + I+ +P V+ SD VLV+ +G++ +
Sbjct: 450 QLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487
|
Length = 506 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 5/187 (2%)
Query: 1130 VGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIR 1189
+G G+GK+T + L L+ P G +++ DI T L +R LG+ PQ LF
Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTV 1020
Query: 1190 CNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249
WE ++QL +D L E + S G ++ +S+ A +
Sbjct: 1021 AEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077
Query: 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTV-IDSDLVLVLSDGR 1308
A+++VLDE T+ VD + I ++ T+ H + + D + ++S GR
Sbjct: 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGR 1137
Query: 1309 VAEFDTP 1315
+ TP
Sbjct: 1138 LYCSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 29/193 (15%)
Query: 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII---- 1157
L + G LP VL ++ + G+ + + G +GSGKSTL+++L+ P G+I++
Sbjct: 16 LHQQGGVRLP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG 74
Query: 1158 DNIDISTIGLHDL----RSRLGIIPQDPNLFEGTI-RCN-LDPLEEHSDREIWEALDKSQ 1211
+ +D+ T ++ R+ +G + Q F I R + LD + E L +
Sbjct: 75 EWVDLVTAEPREVLEVRRTTIGYVSQ----FLRVIPRVSALDVVAE-------PLLARGV 123
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSV-------GQRQLVSLGRALLKQARILVLDEATASV 1264
++ R K L T + WS+ G++Q V++ R + IL+LDE TAS+
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183
Query: 1265 DTATDNLIQKIIR 1277
D ++ ++IR
Sbjct: 184 DATNRAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 572 DRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH---TGSELFKEYIMTALANK 627
DR ++ LSGG+ QRV +A AL +DAD+Y D+P S +D + + +E A K
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL---AEDGK 264
Query: 628 TVIFVTHQVEFLPA-ADFILVL 648
VI V H + L +DF+ +L
Sbjct: 265 YVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--------NK 627
LSGG+ QRV +A AL ++AD+YLLD+P A+ E + I+ A K
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEP----SAYLDVE---QRIIVAKVIRRFIENNEK 507
Query: 628 TVIFVTHQVEFL 639
T + V H + +
Sbjct: 508 TALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 9/169 (5%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
E + + YG+ LH ++ G+ + ++G G+GK+TL+ L
Sbjct: 2 EKVMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS 59
Query: 1153 GRIIIDNIDISTIGLHD-LRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKS 1210
GRI+ D DI+ +R + I+P+ +F T+ NL ++R+ ++
Sbjct: 60 GRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ----- 114
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
+ V +L ++ S G++Q++++GRAL+ Q R+L+LDE
Sbjct: 115 ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYV-----SQSA 524
LSG ++ V G +A+ G G+GKS+++ + G + +G + G SQ A
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 525 WI----QSGN------IEENILFG----SPMDKAKYKKVI-HACSLKKDLELFSHGDQTI 569
I Q N I ENI G + + +KK+ A L L L +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-RFSSDKL 138
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE---LFKEYIMTAL-- 624
+G+ LS G++Q V++A+ L ++ + ++D+P DA T +E LF+ ++ L
Sbjct: 139 VGE----LSIGEQQMVEIAKVLSFESKVIIMDEP---TDALTDTETESLFR--VIRELKS 189
Query: 625 ANKTVIFVTHQV-EFLPAADFILVLKEGRII 654
+ +++++H++ E D + V ++G+ I
Sbjct: 190 QGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA-YVSQSAWIQS 528
L +++KV A+ G G+GKS+LL C+ G K SG + G + S +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 529 G--------------NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI-IGDR 573
G ++ +N+ G K + V + +F D I +
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMF--VDQDKMYRDTKAIFDELDIDIDPRAK 131
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--TVIF 631
LS Q Q +++A+A +A I ++D+P S++ + LF I+ L + +++
Sbjct: 132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKERGCGIVY 189
Query: 632 VTHQV-EFLPAADFILVLKEGRII 654
++H++ E D I +L++G+ I
Sbjct: 190 ISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
G++LSGGQ+QR+ +ARA+ + ++ LLD+P SA+D + +E ++ + T+ VT
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDYTIALVT 205
Query: 634 HQVE 637
H ++
Sbjct: 206 HNMQ 209
|
Length = 261 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 18/78 (23%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--------NK 627
+LSGG+ QRV +A L +DAD+YLLD+P AH E + + A A
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEP----SAHLDVE---QRLAVAKAIRRIAEEREA 505
Query: 628 TVIFVTHQVEFLPAADFI 645
T + V H + + D+I
Sbjct: 506 TALVVDHDIYMI---DYI 520
|
Length = 590 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-05
Identities = 50/200 (25%), Positives = 101/200 (50%), Gaps = 24/200 (12%)
Query: 480 GMRVAVCGMVGSGKSSLLSCILGEIPK--ISGEVRLCG----------TAAYVSQSAWIQ 527
G+ A+ G+ G+GK++L+ + G I G++R+ G + Y Q+ I
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND-IH 964
Query: 528 SGNI--EENILFGS----PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN-LSGG 580
S + E++++ + P + +K +K++ + + +EL + D I+G G+ LS
Sbjct: 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIVGLPGVTGLSTE 1023
Query: 581 QKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ--VEF 638
Q++R+ +A L + I +D+P S +DA + + + T +TV+ HQ ++
Sbjct: 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1083
Query: 639 LPAADFILVLKE-GRIIQAG 657
A D +L++K G++I +G
Sbjct: 1084 FEAFDELLLMKRGGQVIYSG 1103
|
Length = 1470 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVE 637
SGG + R+ LARAL+ + D+ LLD+P + +D H + L+ E + KT I V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYLLKWP-KTFIVVSHARE 402
Query: 638 FLPAADFILVLKEGRIIQA--GKYD 660
FL ++ G+ + G YD
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDYD 427
|
Length = 718 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 51/216 (23%), Positives = 102/216 (47%), Gaps = 23/216 (10%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL----RSRL----- 1174
G+ +GIVG +GSGK+TL++ + + P G + D L+ + R RL
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 1175 GIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDI-VRGKD--QKLETPVLENG 1231
G + Q+P +G +R + +R + A+ G+I +D +++E +
Sbjct: 92 GFVHQNPR--DG-LRMQVSAGGNIGERLM--AIGARHYGNIRAEAQDWLEEVEIDLDRID 146
Query: 1232 D---NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD--CTVC 1286
D +S G +Q + + R L+ + R++ +DE T +D + + ++R ++ V
Sbjct: 147 DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206
Query: 1287 TIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLED 1321
+ H + + +D ++V+ G+V E R+L+D
Sbjct: 207 IVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242
|
Length = 258 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 47/257 (18%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--PAC-- 1152
I++ DL + YG + + +G +G GKST+++ L R+ E P
Sbjct: 5 IDVKDLNIYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62
Query: 1153 -GRIIIDNIDISTIGLH--DLRSRLGIIPQDPNLFEG-TIRCN-LDPLEEHSDREIWEAL 1207
G +++D D+ G+ +R +G++ Q PN F +IR N + L+ + R
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVR------ 116
Query: 1208 DKSQLGDIV----RG-------KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
+K L ++V RG KD +L+ P G S GQ+Q + + RA+ + +L+
Sbjct: 117 NKKDLDELVEKSLRGANLWNEVKD-RLDKP----GGGLSGGQQQRLCIARAIAVEPDVLL 171
Query: 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD--- 1313
+DE +++D + I+ +I +D T+ + H + +SD + A F+
Sbjct: 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAAR------VSD-QTAFFNLEA 224
Query: 1314 --TPGRLLE--DKSSMF 1326
PGRL+E D +F
Sbjct: 225 TGKPGRLVEIDDTEKIF 241
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 42/219 (19%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACG-------------RIIIDNIDISTIGLHDL 1170
G+ + IVG +GSGKS AL RL+E A G R +I+ + S + +
Sbjct: 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101
Query: 1171 R-SRLGIIPQDPNLFEGTIRCNLDP-------------LEEHSDREIWEAL-DKSQLGDI 1215
R + + +I Q+P +L+P L + + RE EA+ + ++ D
Sbjct: 102 RGADMAMIFQEP-------MTSLNPVFTVGEQIAESIRLHQGASRE--EAMVEAKRMLDQ 152
Query: 1216 VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275
VR + +T + S G RQ V + AL + +L+ DE T ++D I ++
Sbjct: 153 VRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 1276 IRTEFKDCT--VCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
I+ K+ + V I H + V + +D VLV+ G E
Sbjct: 211 IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249
|
Length = 623 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 55/236 (23%), Positives = 101/236 (42%), Gaps = 58/236 (24%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------- 517
+ L +S +V G + + G G+GKS+LL+ + G +P SG ++ G
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAA 65
Query: 518 ------AYVSQSAWIQSGNIEENILFGSPM------------DKAKYKKVIH--ACSLKK 557
AY+SQ F P+ ++ A +L
Sbjct: 66 ELARHRAYLSQQQ---------TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGL 116
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAH 610
D +L +Q LSGG+ QRV+LA + Q + LLD+P +++D
Sbjct: 117 DDKLGRSVNQ---------LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167
Query: 611 TGSELFKEYIMTALANK--TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLL 663
+ L + +++ L + V+ +H + L AD + +LK+G+++ +G+ D++L
Sbjct: 168 QQAALDR--LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 577 LSGGQKQRVQLARAL----YQDADIYLLDDPFSAVDAHTGSELFKEYIM-TALANKTVIF 631
LSGG+K+ LA L + +Y+LD+ +D G L E I+ + VI
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIV 136
Query: 632 VTHQVEFLPAAD 643
+TH E AD
Sbjct: 137 ITHLPELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 57/208 (27%)
Query: 463 PSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG--EIPKISGEVRLCG----- 515
R L+ IS V G A+ G G+GK++LL + G I+GE+ + G
Sbjct: 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK 75
Query: 516 ----TAAYVSQSAWIQSGN--IEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
+ YV Q + S N + E + F A
Sbjct: 76 NFQRSTGYVEQ-QDVHSPNLTVREALRF-------------SALL--------------- 106
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTV 629
RG+++ Q++R+ + L I LD+P S +D+ + + A + + +
Sbjct: 107 ---RGLSVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI 161
Query: 630 IFVTHQVEFLPAA------DFILVLKEG 651
+ HQ P+A D +L+LK G
Sbjct: 162 LCTIHQ----PSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 31/233 (13%)
Query: 1086 RPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALF 1145
R P S P N +++ + YG+ + +L I G +IG++GR G+GKSTLI+ L
Sbjct: 303 RAPESLP-NPLLKMEKVSAGYGDRI--ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA 359
Query: 1146 RLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205
+ P G IGL +LG Q F +R + PL +H R +
Sbjct: 360 GELAPVSG----------EIGLAK-GIKLGYFAQHQLEF---LRADESPL-QHLARLAPQ 404
Query: 1206 ALDKSQLGDIVRG----KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
L++ +L D + G D+ V E +S G++ + L + ++ +L+LDE T
Sbjct: 405 ELEQ-KLRDYLGGFGFQGDK-----VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458
Query: 1262 ASVD-TATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD 1313
+D L + +I E V H + + D DL LV DG+V FD
Sbjct: 459 NHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTD-DLYLV-HDGKVEPFD 509
|
Length = 638 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 572 DRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVD-------AHTGSELFKEYIMTA 623
DR I LSGG+ QRV +A AL +DAD Y D+P S +D A EL ++
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED----- 188
Query: 624 LANKTVIFVTHQVEFLP-AADFILVL 648
+ V+ V H + L +D+I L
Sbjct: 189 --DNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII--PQD- 1180
G+ +G+ G G+G++ L + L+ L GRI+++ +I+ + R G++ P+D
Sbjct: 289 GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLARGLVYLPEDR 347
Query: 1181 --PNLF-EGTIRCNLDPLEEHSDREIW--EALDKS-------QLGDIVRGKDQKLETPVL 1228
L+ + + N+ L H+ R W A + + L +Q T
Sbjct: 348 QSSGLYLDAPLAWNVCAL-THNRRGFWIKPARENAVLERYRRALNIKFNHAEQAART--- 403
Query: 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCT-VCT 1287
S G +Q V + + L ++L++DE T VD + N I ++IR+ V
Sbjct: 404 -----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 1288 IA---HRIPTVIDSDLVLVLSDGRVA 1310
I+ I + +D VLV+ G ++
Sbjct: 459 ISSDLEEIEQM--ADRVLVMHQGEIS 482
|
Length = 510 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDT-ATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
S G +Q V +GR LL Q IL+LDE T +D A + Q I KD + I+ +P
Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452
Query: 1294 TVID-SDLVLVLSDGRVA 1310
++ +D +LV+S+G VA
Sbjct: 453 ELLGITDRILVMSNGLVA 470
|
Length = 491 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-05
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDP---FSAVDAHTGSELFKEYIMTALANK-TVIF 631
LS GQKQ +++ L QD + LLD+P + + +EL K LA K +V+
Sbjct: 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-----LAGKHSVVV 197
Query: 632 VTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662
V H +EF+ + AD + VL +G ++ G D +
Sbjct: 198 VEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 7e-05
Identities = 61/222 (27%), Positives = 87/222 (39%), Gaps = 70/222 (31%)
Query: 418 QTKVSLDRISGF--LQEEELQ---EDATIVLPRG--MTNVAIQIENAEFCWYPSSS---R 467
Q K S R++ + L EE Q E I +P G + + I+ EN S S R
Sbjct: 285 QAK-SKARLARYEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENL------SKSFGDR 337
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--AYVSQS-- 523
+ +S + G V + G G+GKS+L I G+ SG +++ T AYV QS
Sbjct: 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD 397
Query: 524 -------AW---------IQSGNIEENI-----LFGSPMDKAKYKKVIHACSLKKDLELF 562
W I+ GN E F F
Sbjct: 398 ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFN-----------------------F 434
Query: 563 SHGDQT-IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
GDQ +G LSGG++ R+ LA+ L Q ++ LLD+P
Sbjct: 435 KGGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDEP 472
|
Length = 556 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 24/167 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-AYVSQSAWIQS 528
L +S + G +A+ G GSGKS+LL + G SG+V G + +S +A +
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84
Query: 529 GNIE-----------------ENILFGSPMDKAKYKKVIHACSLKKDLELFSH-GDQTII 570
N + EN+ + K K ++ + LE+ + G +
Sbjct: 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEI-----NSRALEMLAAVGLEHRA 139
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
R LSGG++QRV +ARAL + + L D+P +DA +F+
Sbjct: 140 NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
|
Length = 233 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 32/213 (15%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCI-----LGEIPKISGEVRLCGTAAY------VS 521
+SM A+ G G GKS++L I L +++G++ L T Y VS
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 522 QSAWI----QSGN------IEENILFGSPMD----KAKYKKVIHACSLKKDLELFSHGDQ 567
+ Q N I +N++ G ++ +++ +++ + LK+ + L+
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESS-LKR-VALWDEVKD 140
Query: 568 TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK 627
+ + + LSGGQ+QR+ +AR + ++ L+D+P SA+D S L E ++ L K
Sbjct: 141 RLKSN-AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI--STLKIEELIEELKEK 197
Query: 628 -TVIFVTHQVEFLP-AADFILVLKEGRIIQAGK 658
T+I VTH ++ +D+ G +++ G+
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230
|
Length = 252 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-05
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ-- 527
L+ IS +V G V + G+ GSGKS+L + I G G V + G+AA ++ S+ +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 528 -SG--NIE-ENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583
+G NIE + ++ G + K K K++I D+ F + Q + S G K
Sbjct: 100 LTGIENIELKGLMMG--LTKEKIKEIIPEIIEFADIGKFIY--QPV-----KTYSSGMKS 150
Query: 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636
R+ A +++ + DI ++D+ S D + + KT+ F++H +
Sbjct: 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203
|
Length = 549 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 30/219 (13%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173
L G+ G+ I ++G +G GKSTL+ + L +P G +I++ I+ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 1174 LGIIPQDPNLFEG-TIRCN--------LDPLEEHSDREIWEALDKSQLGDIVRGKDQKLE 1224
++ Q+ +L T+R N L L + R I E + L + D++
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVE--EHIALVGLTEAADKRP- 112
Query: 1225 TPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT-DNLIQKIIRT-EFKD 1282
S G +Q V++ RAL + ++L+LDE ++D T NL +++++ E
Sbjct: 113 -------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1283 CTVCTIAHRI-PTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
TV + H + ++ SD V++L++G A G++LE
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANI---GQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 15/68 (22%)
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA-HTG------SELFKEYIMTALAN 626
G +LSGGQ+QR+ +AR + ++ LLD+P SA+D TG +EL ++Y
Sbjct: 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDY------- 206
Query: 627 KTVIFVTH 634
TV+ VTH
Sbjct: 207 -TVVIVTH 213
|
Length = 260 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 9e-05
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 572 DRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH---TGSELFKEYIMTALANK 627
DR I LSGG+ QRV +A AL +DAD Y D+P S +D + L +E K
Sbjct: 207 DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL----AEGK 262
Query: 628 TVIFVTHQVEFLPA-ADFILVL 648
V+ V H + L AD + +
Sbjct: 263 YVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
M I++E+ F YP ++ L +S V G VA+ G GSGKS+L + G +
Sbjct: 1 MKEEIIRVEHISF-RYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59
Query: 507 ISGEVRLCG 515
+G + + G
Sbjct: 60 EAGTITVGG 68
|
Length = 279 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 47/226 (20%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L +++ V G A+ G G+GKS+L+ + G G + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 518 ----AYVSQSAWIQSGNIEENILFGS-PMDK------AKYKKVIHACS-------LKKDL 559
Y S I + EN+ G K ++++ + LK DL
Sbjct: 81 GIGIIYQELSV-IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 560 ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
+ NLS KQ +++A+ L DA + ++D+P S++ LF
Sbjct: 140 DEKVA-----------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--L 186
Query: 620 IMTALAN--KTVIFVTHQV-EFLPAADFILVLKEGRIIQAGKYDDL 662
IM L +++++H++ E D V+K+G + +G D+
Sbjct: 187 IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
Length = 510 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 38/228 (16%)
Query: 1115 HGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP----ACGRIIIDNIDISTIGLHDL 1170
+ + G+ + +VG +GSGKS A+ L+ P G I++D + + +
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---I 59
Query: 1171 RSR-LGIIPQDP-----------NLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRG 1218
R R + I Q+P N T+R ++ I EAL+ L D
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL-ILEALEAVGLPDP--- 115
Query: 1219 KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT 1278
++ L+ + S G Q V + ALL + L+ DE T +D + K++R
Sbjct: 116 -EEVLKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1279 --EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE-------FDTPG 1316
+ + I H + V +D V V+ DGR+ E F P
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 53/174 (30%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSL---LSCILGEIPKISGEVRLCGTAAYV-SQSAW 525
L G+S ++RG +AV G G GKS+L L+ I E P GE+ G A
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--ETPT-GGELYYQGQDLLKADPEAQ 87
Query: 526 ------IQ--------SGN--------IEENILFGSPMDKAKYKKVIHACSLKKDLE--- 560
IQ S N +EE +L + + A+ ++ A K L
Sbjct: 88 KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH 147
Query: 561 ------LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD 608
+FS GGQ+QR+ +ARAL D D+ + D+P SA+D
Sbjct: 148 YDRYPHMFS---------------GGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-04
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 63/191 (32%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII--IDNIDISTIGLHDL 1170
+L I+ +F G KIG++G G+GKSTL+ RI+ +D +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVDK-EFEGEARPAP 68
Query: 1171 RSRLGIIPQDPNLFEG-TIRCN-----------LDPLEEHSDR----------------E 1202
++G +PQ+P L T+R N LD E E
Sbjct: 69 GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGE 128
Query: 1203 IWEALDKSQLGDIVRGKDQKLE------------TPVLENGDNWSVGQRQLVSLGRALLK 1250
+ E +D + D+ D +LE V S G+R+ V+L R LL+
Sbjct: 129 LQEIIDAADAWDL----DSQLEIAMDALRCPPWDAKV----TKLSGGERRRVALCRLLLE 180
Query: 1251 QARILVLDEAT 1261
+ +L+LDE T
Sbjct: 181 KPDMLLLDEPT 191
|
Length = 556 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 40/200 (20%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------AAYV 520
+P L IS + G + + G G+GK++LL I G + GE+ Y
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73
Query: 521 SQSAWI--QSG-----NIEENILFGSPMDKAKYKKVIHACSLKKDLE----LFSHGDQTI 569
Q ++ +SG + EN L+ IH + LFS I
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLYD-----------IHFSPGAVGITELCRLFSLE-HLI 121
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-- 627
G+ LS GQK++V L R A ++LLD+P A+D EL I+T +
Sbjct: 122 DYPCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-----ELSLLTIITKIQEHRA 175
Query: 628 ---TVIFVTHQVEFLPAADF 644
V+ +HQ L AD+
Sbjct: 176 KGGAVLLTSHQDLPLNKADY 195
|
Length = 200 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL---------RSRL 1174
G+ +GIVG +GSGK+TL+ AL + P G + D L+ L R+
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 1175 GIIPQDP 1181
G + Q P
Sbjct: 92 GFVHQHP 98
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 77/281 (27%)
Query: 1075 PGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTG 1134
P P++E S+ I +DL + GE L ++G +G
Sbjct: 8 PSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLT-----------------LLGPSG 50
Query: 1135 SGKSTLIQALFRLI----EPACGRIIIDNIDISTIGLHDLRSRLGIIPQD---------- 1180
GK+T++ RLI P GRI++D DI+ + ++
Sbjct: 51 CGKTTVL----RLIAGFETPDSGRIMLDGQDIT-----------HVPAENRHVNTVFQSY 95
Query: 1181 ---PNL--FEGT---IRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
P++ FE +R P E + R + EAL QL + + K +L
Sbjct: 96 ALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLEEFAQRKPHQL--------- 145
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK------DCTVC 1286
S GQ+Q V++ RA++ + ++L+LDE+ +A D ++K ++ E K T
Sbjct: 146 --SGGQQQRVAIARAVVNKPKVLLLDESL----SALDYKLRKQMQNELKALQRKLGITFV 199
Query: 1287 TIAH-RIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
+ H + + SD ++V+ DGR+ + TP + E+ ++F
Sbjct: 200 FVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240
|
Length = 375 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFL 639
G K RV LA+AL+ + DI LLD+P + +D +T L E ++ N T+I ++H FL
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL--EDVLNER-NSTMIIISHDRHFL 215
Query: 640 PA-----ADFILVLKEGRI-IQAGKYDDLLQAGT 667
+ AD L G + + G YD+ + A T
Sbjct: 216 NSVCTHMAD----LDYGELRVYPGNYDEYMTAAT 245
|
Length = 530 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 59/233 (25%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNI 531
+S++V G + G G+GK++L I G + SGEV ++ G+
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-------------NVRVGDE 348
Query: 532 EENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD------------------- 572
++ P + + K+ I L ++ +L+ H +T++ +
Sbjct: 349 WVDMTKPGPDGRGRAKRYIGI--LHQEYDLYPH--RTVLDNLTEAIGLELPDELARMKAV 404
Query: 573 -------------RGI------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
I LS G++ RV LA+ L ++ I +LD+P +D T
Sbjct: 405 ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKV 464
Query: 614 ELFKEYIMTALA--NKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLL 663
++ I+ A +T I V+H ++F L D ++++G+I++ G ++++
Sbjct: 465 DV-THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 41/259 (15%)
Query: 1069 YQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV-------LHGITCAF 1121
++ ++ E E R + P G +E D +++ EN+PLV + ++
Sbjct: 418 FKRPRVE-EIESGREGGRNSNLVPGRGIVEYQDNGIKF-ENIPLVTPNGDVLIESLSFEV 475
Query: 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181
P G + I G G GKS+L + L L GR+ + +L +PQ P
Sbjct: 476 PSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRP 524
Query: 1182 NLFEGTIRCNL---DPLEE-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
+ GT+R + D E+ SD+++ + LD QL I+ +
Sbjct: 525 YMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE------REGGWSAVQD 578
Query: 1234 W----SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIA 1289
W S G++Q +++ R + + +LDE T++V + + ++ R T+ +++
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVS 636
Query: 1290 HRIPTVIDSDLVLVLSDGR 1308
HR ++ L+ DGR
Sbjct: 637 HR-KSLWKYHEYLLYMDGR 654
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L +S+ +++G V + G G+GK++LL + G+ SG + G Q+A I
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 530 NI---------------EENILFGSPM-DKAKYKKVIHACSLKKDLELFSHGDQTIIGDR 573
+ EEN+ G ++ ++++ I K ELF + I R
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHERRI-QR 134
Query: 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
+SGG++Q + + RAL + LLD+P + ++F + I IF+
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQGMTIFLV 193
Query: 634 HQ--VEFLPAADFILVLKEGRII 654
Q + L AD VL+ G ++
Sbjct: 194 EQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 24/167 (14%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRLGIIPQDPN 1182
G+ + +VG G+GKSTL+ + L+ P G I + +L R R + Q
Sbjct: 22 GEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTP 80
Query: 1183 LFEGTIRCNLDP---LEEHSDREIWEALDKSQLGDIVR--GKDQKLETPVLENGDNWSVG 1237
F + L H + S L ++ G D KL V + S G
Sbjct: 81 PF------AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV----NQLSGG 130
Query: 1238 QRQLVSLGRALLK-------QARILVLDEATASVDTATDNLIQKIIR 1277
+ Q V L +L+ ++L+LDE S+D A + +++
Sbjct: 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
|
Length = 248 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI--------I 1156
RYG N LH + G + +G+VG G GKST ++ L ++P G+ I
Sbjct: 9 RYGPN-SFKLHRLPVPREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEI 66
Query: 1157 IDNIDISTIGLHDLRSRL-------GIIPQD----PNLFEGTIRCNLDPLEEHSDREIWE 1205
+D S L + ++L + PQ P +G + L +E
Sbjct: 67 LDEFRGSE--LQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDE-------- 116
Query: 1206 ALDKSQLGDIVRGKDQKLE-TPVLENG-DNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
+ +L ++V +LE VL+ D S G+ Q V++ AL + A DE ++
Sbjct: 117 ---RGKLDELV----DQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSY 169
Query: 1264 VD 1265
+D
Sbjct: 170 LD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 23/240 (9%)
Query: 461 WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYV 520
W+ P L G+++ + G G GKS+L + G + G V G
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 521 SQSAWIQSGNIEENILFGSPMDKAKYKKVIH--ACSLKK----DLELFSHGDQ--TIIGD 572
S+ + + +F P + Y + A SL+ + E+ D+ T++
Sbjct: 68 SKRGLLALRQ-QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA 126
Query: 573 RGIN------LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+ LS GQK+RV +A AL A LLD+P + +D +++
Sbjct: 127 QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 627 KTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLL-------QAGTDFNALVSAHHE 678
VI +H ++ + +D + VL++G+I+ G ++ QAG LV H +
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQPWLVKLHTQ 246
|
Length = 271 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 30/209 (14%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAAYVSQSAW 525
R L G++ + G + G G+GKS+LL I G E P +G++ G ++
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNRE 73
Query: 526 I-----QSGNI--EENILFGSPMDKAKYKKV----IHACSLKKDLE--LFSHGDQTIIGD 572
+ Q G I + ++L MD+ Y V I A + D+ + + D+ + D
Sbjct: 74 VPFLRRQIGMIFQDHHLL----MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 573 RG----INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTALA 625
+ I LSGG++QRV +ARA+ + L D+P +D LF+E+ +
Sbjct: 130 KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV- 188
Query: 626 NKTVIFVTHQVEFLPAADF-ILVLKEGRI 653
TV+ TH + + + +L L +G +
Sbjct: 189 --TVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 18/202 (8%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
L IS+K G + + G+ GSGKS+L + I G + G+V G + ++ SA + SG
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGL-SG 98
Query: 530 NIE--ENILFGSPMDKAKYKKVIHACSLKKDLELFSH-GDQTIIGDRGINLSGGQKQRVQ 586
+ ENI F K K++ ++ + FS G+ I S G + ++
Sbjct: 99 QLTGIENIEFKMLCMGFKRKEIK---AMTPKIIEFSELGE--FIYQPVKKYSSGMRAKLG 153
Query: 587 LARALYQDADIYLLDDPFSAVD-AHTGSELFKEYIMTALANKTVIFVTHQV----EFLPA 641
+ + + DI ++D+ S D L K Y NKT+ FV+H + +F
Sbjct: 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTK 212
Query: 642 ADFILVLKEGRIIQAGKYDDLL 663
+I + G++ G+ DD+L
Sbjct: 213 IAWI---EGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 34/243 (13%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+++ + G + I+ P GK I+G +G GK+TL++ + I P G I+
Sbjct: 8 VDMRGVSFTRGNRC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1157 IDNIDISTI---GLHDLRSRLGIIPQ------DPNLFEGTIRCNLDPLEEHSDREIWEAL 1207
D +I + L+ +R R+ ++ Q D N+F+ PL EH+ ++ L
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY----PLREHT--QLPAPL 119
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDN-----WSVGQRQLVSLGRALLKQARILVLDEATA 1262
S + KLE L S G + +L RA+ + +++ DE
Sbjct: 120 LHSTVM-------MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFV 172
Query: 1263 SVDTATDNLIQKIIRTEFKDC---TVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318
D T ++ K+I +E T ++H +P V+ +D +++D ++ + L
Sbjct: 173 GQDPITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
Query: 1319 LED 1321
+
Sbjct: 232 QAN 234
|
Length = 269 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 28/218 (12%)
Query: 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181
P G+ +G +G G+GKST ++ L L+ P G++ + D R +
Sbjct: 48 PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV--------RVNGKDPFRRREEYLRSI 99
Query: 1182 NL----FEGTIRCN--LDPLEEHSDREIWEALDK---SQLGDIVR--GKDQKLETPVLEN 1230
L LD LE + I+E D +L + + L+ PV
Sbjct: 100 GLVMGQKLQLWWDLPALDSLE--VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV--- 154
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--TEFKDCTVCTI 1288
S+GQR L ALL ++L LDE T +D I++ ++ E + TV
Sbjct: 155 -RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 1289 AHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
H + D VL++ G++ T +L E
Sbjct: 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 25/189 (13%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
R L +++++ G VAV G G+GK++LL ILG E Y S +
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEK-------YRPDSGKV 448
Query: 527 QSGNIEENILFGSPMDKAKYKKVI--HACSLKKDLELFSHGDQTIIGDRGIN-------- 576
+ + L + + I H S DL + I+ G++
Sbjct: 449 EVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDL----NAAVEILNRAGLSDAVLYRRK 504
Query: 577 ---LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKTVIFV 632
LS GQK+R +LA+ L + ++ L+D+ + +D T + ++ + A T+I V
Sbjct: 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564
Query: 633 THQVEFLPA 641
TH+ E A
Sbjct: 565 THRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
QTI+ LSGG +QRV +A AL + + D+P +A+D +++ + ++ L
Sbjct: 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQK 216
Query: 627 KT---VIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665
+ VIF+TH + + AD +LV+ +G ++ G + + A
Sbjct: 217 EMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
|
Length = 623 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 38/220 (17%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV-----RLC-GTAAYVSQSAWI 526
+S + G +A+ G GSGKS+L + G I SGE+ L G +Y SQ
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI-- 89
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHAC-----SLKKDLELFSHGDQTIIGDRGINL---- 577
++F P ++ I L DLE Q I R + L
Sbjct: 90 -------RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH 142
Query: 578 --------SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-- 627
+ GQKQR+ LARAL + + D+ +++D S+L +M L K
Sbjct: 143 ASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQG 200
Query: 628 -TVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665
+ I+VT + + +D +LV+ +G +++ G D+L +
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 22/209 (10%)
Query: 452 IQIENAEFCWYPSSSRPTL-SGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
I +A F YP P L ++ +D R+A+ G G GKS++L I GE+ SG
Sbjct: 509 ISFSDASF-GYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565
Query: 511 VRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSH-GDQTI 569
V +SA ++ ++ + G + ++ + +L +H G +
Sbjct: 566 V---------FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 616
Query: 570 IGDRGIN----LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
G+ + LSGGQK RV A+ ++ I LLD+P + +D L + L
Sbjct: 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL---VLF 673
Query: 626 NKTVIFVTHQVEFLPAA-DFILVLKEGRI 653
V+ V+H + + D + V+ EG++
Sbjct: 674 QGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 66/229 (28%)
Query: 470 LSG-----ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------- 515
L+G IS++V G + + G+VG+G++ L + G P G + L G
Sbjct: 274 LTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA 333
Query: 516 ------------------------------TAAYVSQSAWIQSGNIEENILFGSPMDKAK 545
+ + WI+ + A
Sbjct: 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----------ENAV 382
Query: 546 YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFS 605
++ A ++K F+H +Q R LSGG +Q+V +A+ L + ++D+P
Sbjct: 383 LERYRRALNIK-----FNHAEQAA---RT--LSGGNQQKVLIAKCLEASPQLLIVDEPTR 432
Query: 606 AVDAHTGSELFKEYIMTALANKTVIFVTHQV-EFLPAADFILVLKEGRI 653
VD +++++ A N V+F++ + E AD +LV+ +G I
Sbjct: 433 GVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 56/228 (24%)
Query: 1100 IDLKVRYGENLPLVLHGIT-CAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
I G + +L + PG + + ++GR GSG STL++AL R
Sbjct: 9 ISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKAL-------ANRT--- 57
Query: 1159 NIDISTIGLHDLRSRLGIIPQDPNLFEGTIR-CNLDPLEEHS--DREIWEALDKSQLGDI 1215
+ + EG I + E EI + S+ D+
Sbjct: 58 ------------EGNVSV--------EGDIHYNGIPYKEFAEKYPGEI---IYVSE-EDV 93
Query: 1216 ------VRGKDQKLETPVLENGDNW----SVGQRQLVSLGRALLKQARILVLDEATASVD 1265
VR + L+ + G+ + S G+R+ VS+ AL+ +A +L D +T +D
Sbjct: 94 HFPTLTVR---ETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
Query: 1266 TATDNLIQKIIRT---EFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRV 1309
++T I K IRT K T ++ + D D VLVL +GR
Sbjct: 151 SSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 41/233 (17%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCGTA---A 518
R ++ +S++++ G +A+ G GSGKS IL +P SG++R G + A
Sbjct: 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81
Query: 519 YVSQSAWIQSGNIEENILFGSPMDKAK-----YKKVIHACSLKKDL-------ELFSHGD 566
++ I ++F PM K++ SL + + E+ + D
Sbjct: 82 SEQTLRGVRGNKIA--MIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLD 139
Query: 567 QTII-------GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
+ I D LSGG++QRV +A AL ++ + D+P +A+D ++
Sbjct: 140 RVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQ----- 194
Query: 620 IMTALA------NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
I+ L N ++F+TH + + AD + V++ GR ++ + L A
Sbjct: 195 ILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA 247
|
Length = 529 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 461 WYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAY- 519
W P + + G+++++ G + V G G GKS+ I+G + GEV G
Sbjct: 28 WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87
Query: 520 VSQSAW------IQ--------SGNIEENI--LFGSP-------MDKAKYKKVIHACSLK 556
+ W IQ S N I + P + + + K + A LK
Sbjct: 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK 147
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE-- 614
L +I SGGQ QR+ +ARAL + + + D+P SA+D ++
Sbjct: 148 VGLL------PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201
Query: 615 -LFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDL 662
L ++ + ++IF+ H + + +D +LV+ G ++ G YD++
Sbjct: 202 NLLQQ--LQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI--------I 1156
RYG N L+ + PG K +GI+G G GKST ++ L ++P GR +
Sbjct: 83 RYGVN-GFKLYRLPTPRPG-KVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEV 140
Query: 1157 IDNIDISTI-----GLHDLRSRLGIIPQ--D--PNLFEGTIRCNLDPLEEHSDREIWEAL 1207
I + + L++ R PQ D P + +G + L ++E + E +
Sbjct: 141 IKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFD--EVV 198
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
++ L +++ D+ + S G+ Q V++ ALL+ A + DE ++ +D
Sbjct: 199 ERLGLENVL---DRDV--------SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR 247
Query: 1268 TDNLIQKIIRTEFKDC-TVCTIAHRIPTVID--SDLVLVL 1304
++IR +D V + H + V+D SD V +L
Sbjct: 248 QRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 44/171 (25%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVS 521
+ + P + VD G + V G G+GK++LL + G + SG++++ G A
Sbjct: 19 FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA--- 75
Query: 522 QSAWIQSGNIEENILFGSPMDKAKYKKVI-HACSLKKDLELFS--------HGDQ----- 567
+ D++++ + H LK DL HG +
Sbjct: 76 -----------------TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP 118
Query: 568 ----TIIGDRGI------NLSGGQKQRVQLARALYQDADIYLLDDPFSAVD 608
I+G G LS GQK+R+ LAR A ++LLD+P++ +D
Sbjct: 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--TVI 630
R LS G+ ++ L +AL + D+ +LD+PF +D + +L + ++ +L T++
Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE--LLASLHQSGITLV 189
Query: 631 FVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS--AHHEAIEAMDIP 686
V ++ + +P F VL + + + G+ +++LQ ALV+ AH E +E + +P
Sbjct: 190 LVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ-----QALVAQLAHSEQLEGVQLP 243
|
Length = 490 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 570 IGDRGINLSGGQKQRVQLARALY---QDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G +LS +K +++A+ LY + ++LLD+ +++D S L +
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 627 KTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDD-LLQAGTDFNALVS 674
+VI++ H L AD+++ + G +GK +L +G + S
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPG----SGKTGGKILFSGPPKDISAS 1797
|
Length = 1809 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 30/220 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC----GRIIIDNIDISTIGLH 1168
+L G+ G+ I+G GSGKSTL + + P+ G I+ D+ +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLEL-EP 71
Query: 1169 DLRSRLGI---------IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGK 1219
D R+R G+ IP NL +R L E LD +++ K
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLE--FLR---SALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 1220 DQKLETP--VLENGDN--WSVGQRQLVSLGRALLKQARILVLDEATASVDT----ATDNL 1271
L L N +S G+++ + + L + ++ +LDE + +D
Sbjct: 127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
I + +R + + T R+ I D V VL DGR+ +
Sbjct: 187 INR-LREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 43/251 (17%)
Query: 1101 DLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI-----EPACG 1153
+L V + + + GI+ G+ + +VG +GSGKS ++ L+ G
Sbjct: 11 NLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG 70
Query: 1154 RIIIDNIDISTIGLHDLR----SRLGIIPQDP------------NLFEGTIRCNLDPLEE 1197
I+ D D+ LR +++G+I Q+P L E +R +
Sbjct: 71 SILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV-LRLHRGLSRA 129
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
+ E L+ + +++L+ E S GQRQ V + AL + +L+
Sbjct: 130 AARARALELLELVGI----PEPEKRLDAYPHE----LSGGQRQRVMIAMALANEPDLLIA 181
Query: 1258 DEATASVDTATDNLIQKIIRTEFKDC------TVCTIAHRIPTVID-SDLVLVLSDGRVA 1310
DE T TA D +Q I K+ + I H + V +D V V+ G +
Sbjct: 182 DEPT----TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237
Query: 1311 EFDTPGRLLED 1321
E T L
Sbjct: 238 ETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRLGIIPQDPN 1182
G+ + +VG G+GKSTL+ + + G I + +L R R + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 1183 LFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242
F + L L + D+ E L+ + + D KL + S G+ Q V
Sbjct: 84 PFAMPVWHYL-TLHQP-DKTRTELLN--DVAGALALDD-KLGRST----NQLSGGEWQRV 134
Query: 1243 SLGRALLK-------QARILVLDEATASVDTATDNLIQKII 1276
L +L+ ++L+LDE S+D A + + +++
Sbjct: 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
|
Length = 248 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 51/196 (26%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE----PAC------------GRIII 1157
LH + G+ + ++G +GSGKSTL++ L LI GR+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNL------FEGTI----------RCNLDPLEEHSDR 1201
D + R+ G I Q NL E + R +
Sbjct: 80 D--------IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQ 131
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+AL + + Q++ T S GQ+Q V++ RAL++QA++++ DE
Sbjct: 132 RALQALTRVGMVHFAH---QRVST--------LSGGQQQRVAIARALMQQAKVILADEPI 180
Query: 1262 ASVDTATDNLIQKIIR 1277
AS+D + ++ +R
Sbjct: 181 ASLDPESARIVMDTLR 196
|
Length = 262 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI--GLHDLRSRLGIIPQD- 1180
G+ + ++G +G GK+TL++ + L G I DI+ + D GI+ Q
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY----GIVFQSY 85
Query: 1181 ---PNLFEGTIRCNLD--------PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
PNL T+ N+ E ++R + E LD L R +L
Sbjct: 86 ALFPNL---TVADNIAYGLKNRGMGRAEVAER-VAELLDLVGLPGSERKYPGQL------ 135
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCT----V 1285
S GQ+Q V+L RAL +L+LDE +A D +++ +RTE + V
Sbjct: 136 -----SGGQQQRVALARALATSPGLLLLDEPL----SALDARVREHLRTEIRQLQRRLGV 186
Query: 1286 CTI--AHRIPTVIDSDLVLVLSD-------GRVAEFDTPGRLLEDKSSMF 1326
TI H D + L ++D G + + TP + ++ F
Sbjct: 187 TTIMVTH------DQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--AAYVSQS 523
R LS +S+++ G + + G G+GKS+L+ +LG + G ++ G YV Q
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75
Query: 524 AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583
++ + F K + ++ A + L Q LSGG+ Q
Sbjct: 76 LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQ--------KLSGGETQ 127
Query: 584 RVQLARALYQDADIYLLDDPFSAVD 608
RV LARAL + +LD+P VD
Sbjct: 128 RVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 41/218 (18%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRI----IIDNIDISTI---GLHDLRS-RLG 1175
G+ +GIVG +GSGKS AL L+ A GRI + +I + L+ LR+ ++
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLL-AANGRIGGSATFNGREILNLPEKELNKLRAEQIS 100
Query: 1176 IIPQDPNLFEGTIRCNLDP-----------LEEHSDREIWEALDKS-QLGDIVRGKDQKL 1223
+I QDP +L+P L H EA ++S ++ D V+ + +
Sbjct: 101 MIFQDP-------MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARK 153
Query: 1224 ETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT---EF 1280
+ + +S G RQ V + ALL + ++L+ DE T TA D +Q I T E
Sbjct: 154 RMKMYPH--EFSGGMRQRVMIAMALLCRPKLLIADEPT----TALDVTVQAQIMTLLNEL 207
Query: 1281 KD---CTVCTIAHRIPTVIDS-DLVLVLSDGRVAEFDT 1314
K + I H + V D VLV+ GR E+
Sbjct: 208 KREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL-FEGT 1187
I G G GKS+L++ + +++P+ G I N +I+ I + I + L E T
Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMT 86
Query: 1188 IRCNLDPLEE--HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245
+ NL E +S ++ A+ +L D++ K L S G +++V++
Sbjct: 87 VFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSL-----------SSGMQKIVAIA 135
Query: 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVL 1304
R + Q+ + +LDE ++ +L+ +I + + ++ + + I S +L L
Sbjct: 136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQL 194
|
Length = 195 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1343 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-261 Score=2454.81 Aligned_cols=1254 Identities=48% Similarity=0.775 Sum_probs=1159.7
Q ss_pred CCCCCCCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhHhcCCCCCchHHHHHHHHHH
Q 000702 57 VTPYGDAGL--FSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFW 134 (1343)
Q Consensus 57 ~~~~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~l~~~~~ 134 (1343)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++.. ++|+++++++++||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~-~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSG-KKPSLLRALLRTFG 200 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcccc-CCcHHHHHHHHHHH
Confidence 455666666 999999999999999999999999999999999999999999999999875433 67899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 135 KEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAM 214 (1343)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 214 (1343)
+.+++.+++.++...+.+++|.+++.+++++++++...+.+|.++++++++.++++++.++|++...++|+|+|++|.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999998875455679999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 215 VYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVP 294 (1343)
Q Consensus 215 i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~~~~~ 294 (1343)
||+|+|+++....++.++|+|+|+|++|++++.++..++|.+|.+|+|+++++++||..+|+++++|++++++++|++.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 295 VAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAA 374 (1343)
Q Consensus 295 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1343)
++++++++|++.|+.+|+|++.++|+|+|||+||+|+||+.|.++|++.|++|++.++|..+..++..++++..|.++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCcceEE
Q 000702 375 VTFGTSI-LLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453 (1343)
Q Consensus 375 ~~f~~~~-~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~ 453 (1343)
++|++|. ..++.+|+..+|+++++|+.++.|+..+|..++.+.++++|++|+++||..+|.+++.....+....+..++
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~ 520 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIE 520 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEE
Confidence 9999999 668889999999999999999999999999999999999999999999999988765543223333456799
Q ss_pred EEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCeEEEEcccccccCccHHH
Q 000702 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEE 533 (1343)
Q Consensus 454 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~~ 533 (1343)
++|++|+|+++++.+.|+||||+|++|+++||||++||||||||.+|+||+++.+|++.++|.+|||||+||++||||||
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHH
Confidence 99999999986667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 000702 534 NILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613 (1343)
Q Consensus 534 Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~ 613 (1343)
||+||.|||+++|++|+++|+|++|++.||.||+|+|||+|.||||||||||+||||+|+|+|||+||||+||||+|+++
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHHHHHhhhhcCCCCCCCCCC
Q 000702 614 ELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDS 693 (1343)
Q Consensus 614 ~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1343)
|||++|+++.+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++........+.. ...+ .
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~~~----~ 755 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE-ASEK----D 755 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc-cccc----c
Confidence 9999999999999999999999999999999999999999999999999998888877632211110000 0000 0
Q ss_pred cccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhh
Q 000702 694 DENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAY 773 (1343)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~ 773 (1343)
.+. .. . ....+. +.. .......++.+..+....++.++|+++.|.++|++|+.|+++.+
T Consensus 756 ~~~---~~----~------~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~ 814 (1381)
T KOG0054|consen 756 LES---GE----S------SRESES--RSL------ESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAG 814 (1381)
T ss_pred ccc---cc----c------ccchhh--hhh------hhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcc
Confidence 000 00 0 000000 000 00000000001111224556678888999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 774 RGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPK-VNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLF 852 (1343)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~ 852 (1343)
++..+++++++.++.+++.++.++|+++|++........ .+..+|+++|.+++++..++.+++++++...+.++|++||
T Consensus 815 g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh 894 (1381)
T KOG0054|consen 815 GFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLH 894 (1381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999765322221 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 853 VKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWM 932 (1343)
Q Consensus 853 ~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 932 (1343)
++|+++++|+||+|||+||+|||+||||+|++.+|..+|..+..++.+++.++++++++++++|+++++++|++++++++
T Consensus 895 ~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~ 974 (1381)
T KOG0054|consen 895 DKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFV 974 (1381)
T ss_pred HHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000702 933 QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTF 1012 (1343)
Q Consensus 933 ~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 1012 (1343)
++||++++||++|+++.+|||+++||+|++.|+.|||||+++++|.+++..++|.+.+++|....++||+++|+|+++++
T Consensus 975 ~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~ 1054 (1381)
T KOG0054|consen 975 QRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNL 1054 (1381)
T ss_pred HHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000702 1013 VFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWP 1092 (1343)
Q Consensus 1013 ~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp 1092 (1343)
++++++++++....+..+||.+|++++|++++++.++|++|+.+++|+.|+||||+.||.++|+|+|...+..+||++||
T Consensus 1055 ~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP 1134 (1381)
T KOG0054|consen 1055 VVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWP 1134 (1381)
T ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCC
Confidence 99999888887766558899999999999999999999999999999999999999999999999666665666999999
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhh
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~ 1172 (1343)
++|.|+|+|+++||+|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++++||+
T Consensus 1135 ~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
++++|||||+||+||+|+||||+++|+|+|||+||++|+|+++|.++|+|||++|.|+|.|||.||||++||||||||++
T Consensus 1215 rlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred cCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHH
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~ 1332 (1343)
||||||||||++|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.+
T Consensus 1295 kILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred CEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcccC
Q 000702 1333 YSSRS 1337 (1343)
Q Consensus 1333 ~~~~~ 1337 (1343)
...++
T Consensus 1375 ~~~~~ 1379 (1381)
T KOG0054|consen 1375 AALSS 1379 (1381)
T ss_pred HHHhh
Confidence 76554
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-207 Score=2079.82 Aligned_cols=1251 Identities=37% Similarity=0.622 Sum_probs=1108.7
Q ss_pred cCCCCCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhHhcCCCCCchHHHHHHH
Q 000702 52 AGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILK 131 (1343)
Q Consensus 52 ~~~~~~~~~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~l~~ 131 (1343)
+..++++||++||+|||++|+|++|++++||+++|+.+|||+|+++++++.+.++|++.|+++.+ ++++++++++++
T Consensus 221 ~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~ 297 (1622)
T PLN03130 221 PGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNN 297 (1622)
T ss_pred cccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc---cCCchHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999998753 245899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 132 SFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSAL 211 (1343)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 211 (1343)
+|++.++.++++.++..++.+++|++++.+++++.+++ ....++.++++++++.++.+++.++|++...+++.++|..|
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 376 (1622)
T PLN03130 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTL 376 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997543 22346666666666666667777778888889999999999
Q ss_pred HHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 212 TAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVV 291 (1343)
Q Consensus 212 ~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~~ 291 (1343)
+..+|+|+++++...+++.++|+++|+|++|++++.+++..+|.+|..|++++++++++|..+|++++++++++++++|+
T Consensus 377 ~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l 456 (1622)
T PLN03130 377 VAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPI 456 (1622)
T ss_pred HHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 292 TVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIF 371 (1343)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1343)
+.++.+++++.+++.++.+|+|.+.++|+++||++||+|+||+.|.+++++.|++|++..++......+..++....|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1622)
T PLN03130 457 QTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVL 536 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888877777776777777
Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCcce
Q 000702 372 VAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVA 451 (1343)
Q Consensus 372 ~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 451 (1343)
+++++|++|.+.++.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++|++.++....... +.......
T Consensus 537 v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~ 614 (1622)
T PLN03130 537 VTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPA 614 (1622)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCc
Confidence 8888999999999999999999999999999999999999999999999999999999987664321111 00111236
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCC-cEEEECCeEEEEcccccccCcc
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS-GEVRLCGTAAYVSQSAWIQSGN 530 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-G~i~~~g~i~~v~Q~~~l~~~t 530 (1343)
|+++|++|+|+++.++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|.++|+++||+|+||+|++|
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngT 694 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNAT 694 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCC
Confidence 999999999975445789999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 000702 531 IEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610 (1343)
Q Consensus 531 i~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~ 610 (1343)
|||||+||.++|+++|++++++|+|++|++.||+||+|+|||+|.+|||||||||+||||+|++|+||||||||||||++
T Consensus 695 IreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~ 774 (1622)
T PLN03130 695 VRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAH 774 (1622)
T ss_pred HHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHHHHHhhhhcCCCCCCC
Q 000702 611 TGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSS 690 (1343)
Q Consensus 611 ~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1343)
++++++++++++.++++|+|+|||+++.++.||+|++|++|+++++|+|+|+++.++.+.++...+....+.. . +..
T Consensus 775 ~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~-~-~~~- 851 (1622)
T PLN03130 775 VGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYV-E-ENG- 851 (1622)
T ss_pred HHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccc-c-ccc-
Confidence 9999999999888899999999999999999999999999999999999999988777777765432111000 0 000
Q ss_pred CCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHH
Q 000702 691 EDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMA 770 (1343)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 770 (1343)
+..... ... . ............ .. ... +.....+..+.++|+++.|.++|++|+.|++
T Consensus 852 ~~~~~~----~~~--~---~~~~~~~~~~~~-----------~~-~~~-~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~ 909 (1622)
T PLN03130 852 EEEDDQ----TSS--K---PVANGNANNLKK-----------DS-SSK-KKSKEGKSVLIKQEERETGVVSWKVLERYKN 909 (1622)
T ss_pred cccccc----ccc--c---cccccccccccc-----------cc-ccc-ccccccchhhhhHHHHhcCccCHHHHHHHHH
Confidence 000000 000 0 000000000000 00 000 0000011224456778899999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 771 AAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQK 850 (1343)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 850 (1343)
+.++.+.+.+++++.++.+++.+++++|+++|.+.... .......|+++|++++++..++.+++.+++...+.+++++
T Consensus 910 ~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 987 (1622)
T PLN03130 910 ALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKR 987 (1622)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776666666667777888889999999999864321 1223456888899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 851 LFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACL 930 (1343)
Q Consensus 851 l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~ 930 (1343)
+|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++++|..+++++|++++++
T Consensus 988 L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~ 1067 (1622)
T PLN03130 988 LHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFY 1067 (1622)
T ss_pred HHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000702 931 WMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLS 1010 (1343)
Q Consensus 931 ~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~ 1010 (1343)
+++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+.+.+..|.+.+..+.....++|++.++++++
T Consensus 1068 ~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~ 1147 (1622)
T PLN03130 1068 GAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLG 1147 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCC
Q 000702 1011 TFVFAFCMVLLVSFPHGA-----IDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDS 1085 (1343)
Q Consensus 1011 ~~~~~~~~~~~~~~~~g~-----~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~ 1085 (1343)
++++.+.+.+.+.. .+. ..++.+|++++|++.+...+.++++.+..+|+.++|+||+.+|.+.|+|++...++.
T Consensus 1148 ~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~ 1226 (1622)
T PLN03130 1148 GLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENN 1226 (1622)
T ss_pred HHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 87665555443332 221 226889999999999999999999999999999999999999999988865433344
Q ss_pred CCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC
Q 000702 1086 RPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI 1165 (1343)
Q Consensus 1086 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i 1165 (1343)
.+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++
T Consensus 1227 ~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i 1306 (1622)
T PLN03130 1227 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF 1306 (1622)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC
Confidence 56678999999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++++||++|++|||||+||+||||+||||+++++|+|+|+||++++++++|.++|+||||+|+|+|.|||||||||||||
T Consensus 1307 ~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1307 GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred CHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcH
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~ 1325 (1343)
||||++|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||+++++|.
T Consensus 1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~ 1466 (1622)
T PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSA 1466 (1622)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987899
Q ss_pred HHHHHHHhccc
Q 000702 1326 FLKLVTEYSSR 1336 (1343)
Q Consensus 1326 f~~l~~~~~~~ 1336 (1343)
|++|+++++..
T Consensus 1467 f~~L~~~~~~~ 1477 (1622)
T PLN03130 1467 FSKMVQSTGAA 1477 (1622)
T ss_pred HHHHHHHcChh
Confidence 99999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-203 Score=2042.64 Aligned_cols=1249 Identities=35% Similarity=0.593 Sum_probs=1104.1
Q ss_pred hcCCCCCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhHhcCCCCCchHHHHHH
Q 000702 51 EAGCLKVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAIL 130 (1343)
Q Consensus 51 ~~~~~~~~~~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~l~ 130 (1343)
.|.++.++||+++|+|||++|+|++|++++||+++|+.+|||+|+++++++.+.++|++.|+++.+ .++++++++++
T Consensus 220 ~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~ 296 (1495)
T PLN03232 220 LRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPKPWLLRALN 296 (1495)
T ss_pred ccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc---cCCchHHHHHH
Confidence 344578899999999999999999999999999999999999999999999999999999998753 24589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 131 KSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSA 210 (1343)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 210 (1343)
++|++.++.+++++++..++.+++|++++.+++++++++ ....++.++++++++.++.+++.++|++...+++.++|..
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1495)
T PLN03232 297 NSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997543 2345677777888888888888888888889999999999
Q ss_pred HHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 211 LTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIV 290 (1343)
Q Consensus 211 L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~ 290 (1343)
++..+|+|+++++...+++.++|+++|+|++|++++.+++..+|.+|..|++++++++++|..+|++++++++++++++|
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~p 455 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIP 455 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 291 VTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPI 370 (1343)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 370 (1343)
++.++++++++.+++.++.+|+|.+.++|+++||++||+|+||+.+.+++++.|++|++..++......+..++....|.
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 535 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPV 535 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888777776666666777
Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCcc
Q 000702 371 FVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNV 450 (1343)
Q Consensus 371 ~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~~ 450 (1343)
++.+++|++|.+.++.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++|++.++....... +......
T Consensus 536 ~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~ 613 (1495)
T PLN03232 536 VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCC
Confidence 77788999999999999999999999999999999999999999999999999999999987654221111 1111223
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcE-EEECCeEEEEcccccccCc
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE-VRLCGTAAYVSQSAWIQSG 529 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~-i~~~g~i~~v~Q~~~l~~~ 529 (1343)
.|+++|++|+|++..++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|. +.+++.+|||+|+||+|++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 699999999997544578999999999999999999999999999999999999999974 5678999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000702 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609 (1343)
Q Consensus 530 ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~ 609 (1343)
||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++|+||||||||||||+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHHHHHhhhhcCCCCCC
Q 000702 610 HTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHS 689 (1343)
Q Consensus 610 ~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1343)
+++++++++++++.++++|+|+|||+++.++.||+|++|++|+++++|+|+|+++.++.|.++...+....+.. . ++
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~-~-~~- 850 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQ-E-VN- 850 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccc-c-cc-
Confidence 99999999999888889999999999999999999999999999999999999988877777765432111000 0 00
Q ss_pred CCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHH
Q 000702 690 SEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYM 769 (1343)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 769 (1343)
...+... . . ......+..... . ... ......+....++|+++.|.++|++|+.|+
T Consensus 851 --~~~~~~~-------~-~--~~~~~~~~~~~~---------~---~~~-~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~ 905 (1495)
T PLN03232 851 --TNDENIL-------K-L--GPTVTIDVSERN---------L---GST-KQGKRGRSVLVKQEERETGIISWNVLMRYN 905 (1495)
T ss_pred --ccccccc-------c-c--cccccccccccc---------c---ccc-cccccchhhhhhHHHHhcCcccHHHHHHHH
Confidence 0000000 0 0 000000000000 0 000 000001122456778889999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 770 AAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQ 849 (1343)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~ 849 (1343)
++.++.+.+.+++++.++.++..+++++|+++|++.... ......+|+++|++++++..++.+++.+++...+.++++
T Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 983 (1495)
T PLN03232 906 KAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP--KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAK 983 (1495)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998776666666666777788888999999999864311 122356789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 850 KLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVAC 929 (1343)
Q Consensus 850 ~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~ 929 (1343)
++|.+++++++++|++||+++|+|+++|||++|++.+|..++..+..++..++.+++.+++++++++..+++++|+.+++
T Consensus 984 ~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 1063 (1495)
T PLN03232 984 RLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILF 1063 (1495)
T ss_pred HHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888887777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000702 930 LWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELL 1009 (1343)
Q Consensus 930 ~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~ 1009 (1343)
++++.+|.+++|+++|.+..+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.+..+.....++|+..+++++
T Consensus 1064 ~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 1143 (1495)
T PLN03232 1064 YAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETL 1143 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCC
Q 000702 1010 STFVFAFCMVLLVSFPHGAI-----DPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIED 1084 (1343)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~g~~-----~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~ 1084 (1343)
+++++.+.+.+.+.. .+.+ .++.+|++++|+..+..++.++++.+.+++..++|+||+.+|.+.|+|++...+.
T Consensus 1144 ~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~ 1222 (1495)
T PLN03232 1144 GGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIEN 1222 (1495)
T ss_pred HHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccC
Confidence 766555444333322 2222 2567888999999999999999999999999999999999999988876543233
Q ss_pred CCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC
Q 000702 1085 SRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164 (1343)
Q Consensus 1085 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~ 1164 (1343)
..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||++
T Consensus 1223 ~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1223 NRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred CCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence 34566799999999999999998877789999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHH
Q 000702 1165 IGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244 (1343)
Q Consensus 1165 i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1244 (1343)
++++++|++|++|||||+||+||||+||||+++++|+|+|+||+++++++++.++|+||||+|+|+|.||||||||||||
T Consensus 1303 i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1303 FGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred CCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1245 ARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
||||+++|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||+++++|
T Consensus 1383 ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~ 1462 (1495)
T PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTS 1462 (1495)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998788
Q ss_pred HHHHHHHHhccc
Q 000702 1325 MFLKLVTEYSSR 1336 (1343)
Q Consensus 1325 ~f~~l~~~~~~~ 1336 (1343)
.|++|+++++..
T Consensus 1463 ~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1463 AFFRMVHSTGPA 1474 (1495)
T ss_pred HHHHHHHHhChh
Confidence 999999987654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-200 Score=2014.15 Aligned_cols=1273 Identities=36% Similarity=0.617 Sum_probs=1103.3
Q ss_pred CCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhHhc------------------
Q 000702 56 KVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAE------------------ 117 (1343)
Q Consensus 56 ~~~~~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~------------------ 117 (1343)
..+||++||++||++|+|++|++++||+++|+.+|||+++++++++.+.++|++.|+++.++
T Consensus 200 ~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1522)
T TIGR00957 200 NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKP 279 (1522)
T ss_pred CCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999876311
Q ss_pred --------------------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 000702 118 --------------------NPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYI 177 (1343)
Q Consensus 118 --------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~ 177 (1343)
++.++++++++++++||+.++..++++++..++.+++|++++.+++++.++......+|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~ 359 (1522)
T TIGR00957 280 KGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYF 359 (1522)
T ss_pred cccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHH
Confidence 012347899999999999999999999999999999999999999998765433345788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 178 LAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIW 257 (1343)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~ 257 (1343)
++++++++.++.+++.++|++...+++.++|..|+..+|+|+++++....++.++|+++|+|++|++++.++..++|.+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~ 439 (1522)
T TIGR00957 360 YTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIW 439 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHH
Q 000702 258 MLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYR 337 (1343)
Q Consensus 258 ~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~ 337 (1343)
..|++++++++++|..+|++++++++++++++|++.++++++++.++++++.+|+|++.++|+++|||.||+|+||+.|.
T Consensus 440 ~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~ 519 (1522)
T TIGR00957 440 SAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFL 519 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 338 IQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILL--GAQLTAGSVLSAMATFRILQEPLRNFPDLVSM 415 (1343)
Q Consensus 338 ~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~ 415 (1343)
+++++.|++|++..++..+...+..+.+...|.++.+++|++|.+. ++.++++.+|+++++++.+..|+..+|..+..
T Consensus 520 ~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~ 599 (1522)
T TIGR00957 520 DKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISS 599 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888877777777778888888889888876 46799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccC-CCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHH
Q 000702 416 MAQTKVSLDRISGFLQEEELQEDATIVLP-RGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKS 494 (1343)
Q Consensus 416 ~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~-~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 494 (1343)
+.++++|++||++|++.++.++....... .......++++|++|+|+. .++++|+|+||++++|++++|+||||||||
T Consensus 600 ~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKS 678 (1522)
T TIGR00957 600 IVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKS 678 (1522)
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999987654332111101 0111236999999999963 345799999999999999999999999999
Q ss_pred HHHHHHhcCccCCCcEEEECCeEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCC
Q 000702 495 SLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574 (1343)
Q Consensus 495 TLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 574 (1343)
||+++|+|+++|++|+|.++|.++||+|+||++++||+|||.||.++++++|++++++|++.+|++.+|+||+|.+|++|
T Consensus 679 TLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 679 SLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred HHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH--HhcCCcEEEEEecCCCccccCCEEEEEeCCe
Q 000702 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIM--TALANKTVIFVTHQVEFLPAADFILVLKEGR 652 (1343)
Q Consensus 575 ~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~--~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~ 652 (1343)
.+|||||||||+||||+|++|+++|||||||+||+++++++++.++. +..+++|+|+|||+++.++.||+|++|++|+
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999998873 4567899999999999999999999999999
Q ss_pred EEEecChHHHHhcCccHHHHHHHHHHhhhhcCCCCC-CCCCCcccccccCcccCC--CcCCCCCCCCcc-cccccccCCc
Q 000702 653 IIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNH-SSEDSDENLTLDGCVIPC--KKCDASGDNIDN-LAKEVQDGSS 728 (1343)
Q Consensus 653 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~ 728 (1343)
++++|+++++.+..+.+.++...+....+.....+. ......+.. +....+. ............ ..........
T Consensus 839 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1522)
T TIGR00957 839 ISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGK--EAKLIENGMLVTDVVGKQLQRQLSASSSDSGD 916 (1522)
T ss_pred EEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccc--ccccccccccccccccchhhhhcccccccccc
Confidence 999999999998777777766433211100000000 000000000 0000000 000000000000 0000000000
Q ss_pred hhHHH-HHHH-HHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 000702 729 ASEQK-AIKE-KKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQT 806 (1343)
Q Consensus 729 ~~~~~-~~~~-~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 806 (1343)
..... ...+ .............++|++..|.+++++|+.|+++.|.. .+++++++.++.+++.++.++|+++|.+..
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~ 995 (1522)
T TIGR00957 917 QSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSLWTDDP 995 (1522)
T ss_pred ccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000 0000 00000001123456677888999999999999998654 333444555677788889999999998643
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhh
Q 000702 807 EGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVV 886 (1343)
Q Consensus 807 ~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~i 886 (1343)
....+......|+++|++++++..++.+++.++....+.++++++|++++++++++|++||+++|+|+|+|||++|++.+
T Consensus 996 ~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~i 1075 (1522)
T TIGR00957 996 MVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTV 1075 (1522)
T ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHH
Confidence 21112233456788999999988888888888889999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccch
Q 000702 887 DLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAS 966 (1343)
Q Consensus 887 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~ 966 (1343)
|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++|+++|++..+++|+++++.|+++|+.
T Consensus 1076 d~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~ 1155 (1522)
T TIGR00957 1076 DSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVS 1155 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcH
Confidence 99999999999999999999999999999988888888888888999999999999999999999999999999999999
Q ss_pred heeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 000702 967 TIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNA 1046 (1343)
Q Consensus 967 tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~ 1046 (1343)
|||+|+++++|.+++.+..|.+.++.+.....++|+..++++++.+++.+++.+.+ ...+.+++|.+|++++|+..+..
T Consensus 1156 tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~ 1234 (1522)
T TIGR00957 1156 VIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTF 1234 (1522)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765544443333 33567999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCE
Q 000702 1047 RLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKK 1126 (1343)
Q Consensus 1047 ~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~Gek 1126 (1343)
++.++++.+.++|+.++|+||+.+|.+.|+|.+...+...+++.||.+|.|+|+||+|+|+++.++||+||||+|+||||
T Consensus 1235 ~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Gek 1314 (1522)
T TIGR00957 1235 YLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEK 1314 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCE
Confidence 99999999999999999999999999888776433233455668999999999999999988777899999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHH
Q 000702 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEA 1206 (1343)
Q Consensus 1127 vgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~a 1206 (1343)
||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|+|
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~a 1394 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWA 1394 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 000702 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVC 1286 (1343)
Q Consensus 1207 L~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI 1286 (1343)
|++|+++++|.++|+||||+|+|+|.|||||||||||||||||++|+|||||||||+||.+||+.||++|++.+++||||
T Consensus 1395 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI 1474 (1522)
T TIGR00957 1395 LELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVL 1474 (1522)
T ss_pred HHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhc
Q 000702 1287 TIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1287 ~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~ 1334 (1343)
+||||++|+.+||||+|||+|+|+|+|+|+||+++ +|.|++|+++++
T Consensus 1475 ~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1475 TIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDAG 1521 (1522)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHcC
Confidence 99999999999999999999999999999999986 699999999853
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-195 Score=1960.57 Aligned_cols=1270 Identities=27% Similarity=0.483 Sum_probs=1089.1
Q ss_pred CCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhHhcCCCCCchHHHHHHHHHHH
Q 000702 56 KVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWK 135 (1343)
Q Consensus 56 ~~~~~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~l~~~~~~ 135 (1343)
+.+||++||+|||++|+|++|++++||+++|+.+|||+|+++++++.+.++|++.|+++.++ ..++++|+++++++|++
T Consensus 2 ~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 2 QRSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS-AKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999886532 23568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 136 EAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETF-PHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAM 214 (1343)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 214 (1343)
.+++.++++++.+++.+++|++++.+|++++..... ...++.++++++++.++.+++.++++|...++++++|.+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998543221 2357888888888999999999989999999999999999999
Q ss_pred HHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 215 VYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVP 294 (1343)
Q Consensus 215 i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~~~~~ 294 (1343)
+|+|+++++....++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||+.+|++++++++++++++|++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 295 VAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAA 374 (1343)
Q Consensus 295 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1343)
+++++.++++++++..|+|++.++|+++|||+||+|+||+.|.+++++.|+.|++..++..+...+...+++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777777777788888889
Q ss_pred HHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCcceEE
Q 000702 375 VTFGTSILLGAQLTAGSVLSAMATFRILQEPLR-NFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQ 453 (1343)
Q Consensus 375 ~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~-~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~ 453 (1343)
++|++|.+.++ ++++.+|+++++++.+..|+. .+|..+..+.++.+|++||++||..++.+.... ......++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~i~ 394 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTEVE 394 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCceE
Confidence 99999988754 789999999999999999985 799999999999999999999998876532211 01123589
Q ss_pred EEeeEEEecCC-------------------------------CCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhc
Q 000702 454 IENAEFCWYPS-------------------------------SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 454 ~~~~~f~~~~~-------------------------------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g 502 (1343)
++|++|.|+.. ..+++|+|+||+|++|++++|+||||||||||+++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999531 02468999999999999999999999999999999999
Q ss_pred CccCCCcEEEECCeEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 503 EIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 503 ~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
+++|++|+|.++|.++||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|.+|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 662 (1343)
|||+||||+|++|++|||||||||||+++++++++.++.+..+++|+|+|||+++.++.||+|++|++|++++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888777789999999999999989999999999999999999999
Q ss_pred HhcCccHHHHHHHHHHhh--------------------h--h-----c-C-------CCCCCCC----------------
Q 000702 663 LQAGTDFNALVSAHHEAI--------------------E--A-----M-D-------IPNHSSE---------------- 691 (1343)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~--------------------~--~-----~-~-------~~~~~~~---------------- 691 (1343)
.+....+........... + . . + +..+..+
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 876555554442100000 0 0 0 0 0000000
Q ss_pred --------------CCcccc-----------ccc--Cc-ccC-----------------------CC--cCCC-CCCCCc
Q 000702 692 --------------DSDENL-----------TLD--GC-VIP-----------------------CK--KCDA-SGDNID 717 (1343)
Q Consensus 692 --------------~~~~~~-----------~~~--~~-~~~-----------------------~~--~~~~-~~~~~~ 717 (1343)
...... +.+ .. ..+ .. .... .....+
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 000000 000 00 000 00 0000 000000
Q ss_pred cccc-----cc---ccCCc---hh-HHHH--HHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHH
Q 000702 718 NLAK-----EV---QDGSS---AS-EQKA--IKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIIL 783 (1343)
Q Consensus 718 ~~~~-----~~---~~~~~---~~-~~~~--~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~ 783 (1343)
...+ +. ..... .. ..+. ..............+.++|++..|.++|++|+.|+++.+++..+.++++
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 0000 00 00000 00 0000 0000000011122356678888999999999999999876555555566
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCC------CCCCC-----------CCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 784 AQVLFQFLQIASNWWMAWANPQT------EGDQP-----------KVNPMVL-LVVYMALAFGSSWFIFVRAVLVATFGL 845 (1343)
Q Consensus 784 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~-----------~~~~~~~-l~~y~~l~~~~~~~~~~~~~~~~~~~~ 845 (1343)
+.++.+++..+.++|+.+|.+.. ..... .....+| +++|+++.++..++.+++.+++...+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999998775411 00000 0011223 556666665666778889999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 846 AAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPM 925 (1343)
Q Consensus 846 ~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 925 (1343)
++++++|.+++++++++|++||+++|+|+++|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000702 926 AVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLR 1005 (1343)
Q Consensus 926 ~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~ 1005 (1343)
++++++++++|.+.+|+++|++..+++|+++|+.|++.|+.|||+|+++++|.+++.+..|.+.+.++.....++|+..+
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCC--
Q 000702 1006 MELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIE-- 1083 (1343)
Q Consensus 1006 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~-- 1083 (1343)
+++++.+.+.+++++.+. ...+++|.+|++++|++.+...+.++++.+.+++..+.|+||+.+|.+.|+|.+...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 999877554443333322 2235778899999999999999999999999999999999999999988877542111
Q ss_pred ------------CCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC
Q 000702 1084 ------------DSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA 1151 (1343)
Q Consensus 1084 ------------~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~ 1151 (1343)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++ .
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 112455799999999999999999877889999999999999999999999999999999999998 7
Q ss_pred cceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCC
Q 000702 1152 CGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231 (1343)
Q Consensus 1152 ~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1231 (1343)
+|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||++++|++++.++|+||||+|+|+|
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEee
Q 000702 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1232 ~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive 1311 (1343)
.|||||||||||||||||++|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+||||+||++|+|+|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCCcHHHHHHHHhccc
Q 000702 1312 FDTPGRLLEDKSSMFLKLVTEYSSR 1336 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~~f~~l~~~~~~~ 1336 (1343)
+|+|++|++ ++|.|++|++++..+
T Consensus 1432 ~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1432 YDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred eCCHHHHHc-CCcHHHHHHHHhChh
Confidence 999999997 589999999987544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-186 Score=1874.68 Aligned_cols=1256 Identities=29% Similarity=0.484 Sum_probs=1077.9
Q ss_pred CCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhHh-------------------
Q 000702 56 KVTPYGDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKALNSNWEKLKA------------------- 116 (1343)
Q Consensus 56 ~~~~~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~------------------- 116 (1343)
.+.||+++|||.++++.|++|++..+.|..|+++|||+...+.++.++.-++.+..++...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 4579999999999999999999999999999999999999999886666555443322100
Q ss_pred ------------------------------c-------------------------------------------------
Q 000702 117 ------------------------------E------------------------------------------------- 117 (1343)
Q Consensus 117 ------------------------------~------------------------------------------------- 117 (1343)
.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000702 118 ---------NPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLV 188 (1343)
Q Consensus 118 ---------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (1343)
..++..+++++++++||+.++..++++++.+++.+++|++++.+++++++++.....+++++++++++.++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 00223479999999999999999999999999999999999999999976543223467778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 189 ETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQ--SHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILA 266 (1343)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ir~~L~~~i~~K~l~l~~~~~~--~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~ 266 (1343)
.+++.+++++...+.+.++|.+|...+|+|+++++..... +.++|+++|+|++|++++.+++.++|.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987665 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH
Q 000702 267 LAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGV 346 (1343)
Q Consensus 267 ~~~l~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~ 346 (1343)
+++||..+|+++++|++++++++|++.++++++.++++++++.+|+|++.++|+++|||+||+++||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 347 EFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRI 426 (1343)
Q Consensus 347 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri 426 (1343)
|++.+++......+..++.+..|.++.+++|++|.+.++.||++.+|+++++|+.++.|+..+|..+..+.++.+|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccc------cc-----------c----------------ccC-------------------------CCCC
Q 000702 427 SGFLQEEELQED------AT-----------I----------------VLP-------------------------RGMT 448 (1343)
Q Consensus 427 ~~fl~~~e~~~~------~~-----------~----------------~~~-------------------------~~~~ 448 (1343)
++||+.+|.... .. . ..+ ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 999987652100 00 0 000 0000
Q ss_pred cceEEEEeeEEEecC-------------------------------------CCCCCccccceeEecCCeEEEEEcCCCC
Q 000702 449 NVAIQIENAEFCWYP-------------------------------------SSSRPTLSGISMKVDRGMRVAVCGMVGS 491 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~-------------------------------------~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 491 (1343)
.+.+.++|++|.|+. ..++++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 123566777766431 0235689999999999999999999999
Q ss_pred CHHHHHHHHhcCccCCCcEEEECCeEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccC
Q 000702 492 GKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571 (1343)
Q Consensus 492 GKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig 571 (1343)
|||||+++|+|+++|++|+|.+++.++||+|+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCC
Q 000702 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEG 651 (1343)
Q Consensus 572 ~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G 651 (1343)
++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+.++|+|+|+|||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998877667899999999999999999999999999
Q ss_pred eEEEecChHHHHhcCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhH
Q 000702 652 RIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASE 731 (1343)
Q Consensus 652 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1343)
+++++|+++++++.+ .+..+........+.. +.. ...+.. ...... ......... ... ... .
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~---~~~~~~--~~~~~~----~~~~~~~~~-~~~--~~~--~ 919 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSK---EGD---ADAEVA--EVDAAP----GGAVDHEPP-VAK--QEG--N 919 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhccccccc---ccc---cccccc--cccccc----ccccccccc-ccc--ccc--c
Confidence 999999999998653 3444433211100000 000 000000 000000 000000000 000 000 0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCC
Q 000702 732 QKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811 (1343)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 811 (1343)
.+. .+. .........+..+|++..|.++|++|+.|+++.|+...+.+++++.++.+++..+.++|+++|++...
T Consensus 920 ~~~-~~~-~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~---- 993 (1560)
T PTZ00243 920 AEG-GDG-AALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF---- 993 (1560)
T ss_pred ccc-ccc-cccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence 000 000 00011123455667788899999999999999877665555555666777888899999999885321
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccch
Q 000702 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIP 891 (1343)
Q Consensus 812 ~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~ 891 (1343)
......|+++|+++.++..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++
T Consensus 994 ~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~ 1073 (1560)
T PTZ00243 994 KLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLP 1073 (1560)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHH
Confidence 22345678888888887777777888877888889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeec
Q 000702 892 FRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGF 971 (1343)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf 971 (1343)
..+..++..++.+++.++++++.+|.++++++|++++++++.++|.+..|+++|.+..+++|++++++|++.|+.|||+|
T Consensus 1074 ~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf 1153 (1560)
T PTZ00243 1074 MSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAY 1153 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhC
Confidence 99999999999999999999999998887888888888889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHHHH
Q 000702 972 GQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLV---SFPHGAIDPSMAGLAVTYGLNLNARL 1048 (1343)
Q Consensus 972 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~---~~~~g~~~~~~~gl~l~~~~~~~~~l 1048 (1343)
++++.+.+++.+..|.+.++.+.....++|+..++++++.++.++++++.+ ....+.+++|.++++++|+.++..++
T Consensus 1154 ~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1154 GKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765444333322 22344578999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhc-CCCCCCCCC-----------------------CCCCCC---CCCCCCceEEEEE
Q 000702 1049 SRWILSFCKLENKIISIERIYQYSQ-IPGEAPPVI-----------------------EDSRPP---SSWPENGTIELID 1101 (1343)
Q Consensus 1049 ~~~~~~~~~~e~~~~s~eRi~~~~~-~~~e~~~~~-----------------------~~~~~~---~~wp~~g~I~f~n 1101 (1343)
.++++.+.+++..|+|+||+.+|.+ .|+|+.... +...++ +.||..|.|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 9999999999999999999999996 444321100 011122 2355779999999
Q ss_pred EEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCc
Q 000702 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181 (1343)
Q Consensus 1102 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp 1181 (1343)
|+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||
T Consensus 1314 Vsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp 1393 (1560)
T PTZ00243 1314 VQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393 (1560)
T ss_pred EEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC
Confidence 99999887778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcC-CCEEEEeCC
Q 000702 1182 NLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ-ARILVLDEA 1260 (1343)
Q Consensus 1182 ~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~-~~ILlLDEa 1260 (1343)
+||+||||+||||+++++|+|||+||++++++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||
T Consensus 1394 ~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1394 VLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473 (1560)
T ss_pred ccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhcc
Q 000702 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1261 Ts~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~~ 1335 (1343)
||+||.+||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||+++++|.|++|+++++.
T Consensus 1474 TSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1474 TANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred CccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999999998888999999988764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-151 Score=1407.13 Aligned_cols=1097 Identities=22% Similarity=0.293 Sum_probs=833.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 202 ILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVA 280 (1343)
Q Consensus 202 ~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~ 280 (1343)
+.|.|.-..+|...++.+||.....++.+.+|++.+.|+.|++++++.+. -+..++.....++.++++-+..-+..+++
T Consensus 97 ~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv 176 (1228)
T KOG0055|consen 97 RTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLV 176 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777888888999999999999999999999998753 33344444444555555555555566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 281 TLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF 360 (1343)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 360 (1343)
++.+.+++......+++.+.+...+.++...+--+...|++.+||++-.|+-|+...++..+.-+.-.+.-.+......+
T Consensus 177 ~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~ 256 (1228)
T KOG0055|consen 177 MLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGL 256 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888899888998888888889999999999999999999999887776665444433433333333332
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 000702 361 ITFI--FWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQED 438 (1343)
Q Consensus 361 ~~~~--~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~ 438 (1343)
...+ ++........++||..++..+..++|.+++++...-.-...+......+..+..|++|..+|.+.++.....+.
T Consensus 257 ~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~ 336 (1228)
T KOG0055|consen 257 GLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDP 336 (1228)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCc
Confidence 2211 22333445567888888888889999988877665555667778888899999999999999999976543322
Q ss_pred cc-cccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--
Q 000702 439 AT-IVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-- 515 (1343)
Q Consensus 439 ~~-~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 515 (1343)
.. .........+.|+++||+|+||..++.++|+|+||+|++|+.+|+||+|||||||++++|.|+|+|++|+|.+||
T Consensus 337 ~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~d 416 (1228)
T KOG0055|consen 337 YSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGED 416 (1228)
T ss_pred ccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCcc
Confidence 11 111222345689999999999987778999999999999999999999999999999999999999999999998
Q ss_pred -----------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 516 -----------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 516 -----------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
+||.|.|+|.+|++||+|||.||+| .+.++..++.+.+..++.+..+|+|++|.+||+|..|||||||
T Consensus 417 i~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 417 IRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred chhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 4899999999999999999999996 4678888888888899999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
||||||||.++|+||||||||||||++++ ++.+++++...+|+|.|+|+||++++++||+|++|++|+|+|.|+|+||+
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se-~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESE-RVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHH-HHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999985 55688899999999999999999999999999999999999999999999
Q ss_pred hcCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhh
Q 000702 664 QAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKR 743 (1343)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1343)
+.++.|.++++.+....+..+.+++. +..+.. ..+.... . ........ . ......... ...+
T Consensus 576 ~~~G~Y~~lv~~Q~~~~~~~~~~~~~--~~~~~~--~~s~~~s-----~--~~~~~~~~-----~-~~~~~~~~~-~~~e 637 (1228)
T KOG0055|consen 576 ALGGIYSSLVRLQELEKAAEDEEEEE--SLKEER--SRSLKSS-----S--SSPSLSRG-----S-NRSNLLSVK-PEGE 637 (1228)
T ss_pred hccchHHHHHHHHhhhhhhhcccccc--chhhhh--hhccccc-----c--ccccccCC-----c-ccccccccc-cccc
Confidence 99999999998775443221100000 000000 0000000 0 00000000 0 000000000 0000
Q ss_pred hhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHhhhhhhhcCCCCCCCCCCCChhHHH
Q 000702 744 SRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLF----QFLQIASNWWMAWANPQTEGDQPKVNPMVLL 819 (1343)
Q Consensus 744 ~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 819 (1343)
...... .++. -..++.....+.+. .|.+..+-.++.++. .+........+....... .+.-......|.
T Consensus 638 ~~~~~~-~~~~---~~~s~~~i~k~~~p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~-~~~~~~~~~~~a 710 (1228)
T KOG0055|consen 638 DPEEPV-SEED---EKVSFWRIFKLNKP--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD-DDELKREVRAWA 710 (1228)
T ss_pred cccccc-cccc---ccccHHHHHHhccc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 000000 0011 11222222222222 111111111111111 111121222222111000 000111233588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cChhhhHHHHhhhhhhhcccchhhHHHH
Q 000702 820 VVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDS--TPAGRILNRVSIDQSVVDLDIPFRLGGF 897 (1343)
Q Consensus 820 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~--~~~G~ilnR~s~D~~~id~~l~~~~~~~ 897 (1343)
.+|++++++..++.+++.+++...+.+...++|..+++++++.++.|||. +. |++.+|+.+|...+...+...+..+
T Consensus 711 l~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~v 789 (1228)
T KOG0055|consen 711 LIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLV 789 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999995 45 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcH
Q 000702 898 ASTTIQLVGIIGVMTMVTWQVLLLV---IPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQE 974 (1343)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~---ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~ 974 (1343)
++++..++..+++.++++|.+.+++ .|++++..+++.+++.... +.+............|++.+++||++|+.|
T Consensus 790 v~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~---~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 790 VQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFS---KDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 9999999999999999999987765 4555555555555444322 222223333455778999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 000702 975 KRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL----LVSFPHGAIDPSMAGLAVTYGLNLNARLSR 1050 (1343)
Q Consensus 975 ~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~----~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~ 1050 (1343)
++|.+.+.+.++...+..+... .|-++-..+-..++++.-++. ..+...|.+++..+-..+.....-...+..
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~ 943 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQ 943 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887766554432 233333333222222222111 334557778877655444333333344555
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCC-CcccccceeEecCCCEEEE
Q 000702 1051 WILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENL-PLVLHGITCAFPGGKKIGI 1129 (1343)
Q Consensus 1051 ~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~is~~I~~GekvgI 1129 (1343)
......++-....|+.++++..+.+++-+...+.. ....+.+|+|+|+||+|+|+..+ .+||+|+||+|++||.+|+
T Consensus 944 ~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvAL 1021 (1228)
T KOG0055|consen 944 ASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVAL 1021 (1228)
T ss_pred HHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEE
Confidence 56667788888999999999998665322211111 11113589999999999997432 3699999999999999999
Q ss_pred EcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHH
Q 000702 1130 VGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALD 1208 (1343)
Q Consensus 1130 VGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~ 1208 (1343)
||||||||||++.+|.|+|+|.+|.|.|||+||++++++.||++|++|.|+|.||++||||||.++ .+.+.+||.+|++
T Consensus 1022 VG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak 1101 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAK 1101 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 4579999999999
Q ss_pred HcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 000702 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTI 1288 (1343)
Q Consensus 1209 ~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~I 1288 (1343)
.++.|+||.++|+||||.|||+|.+||||||||+|||||++|||||||||||||+||.++|+.+|++|++...++|.|+|
T Consensus 1102 ~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvI 1181 (1228)
T KOG0055|consen 1102 LANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVI 1181 (1228)
T ss_pred HhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhc
Q 000702 1289 AHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1289 aHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~ 1334 (1343)
||||+||++||.|.|+++|+|+|.|||++|++ ++|.|++|++.+.
T Consensus 1182 AHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1182 AHRLSTIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred ecchhhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 99999999999999999999999999999998 7899999998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-141 Score=1420.63 Aligned_cols=1193 Identities=17% Similarity=0.180 Sum_probs=868.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 130 LKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRS 209 (1343)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 209 (1343)
.+.+++.++++.++.++..++..+.|++++.+++.+..... ...+++.++++.++..++.....+...+++.++..
T Consensus 55 ~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 130 (1466)
T PTZ00265 55 PASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN----VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILK 130 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999999997642211 11122233333344445555556667788999999
Q ss_pred HHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 210 ALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIATIIS 288 (1343)
Q Consensus 210 ~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~ 288 (1343)
.++..+|+|+++++..++++.+.|++++.++.|++.+.+.+. .+..+...++.++.++++++..-+..+++.+++++++
T Consensus 131 ~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~ 210 (1466)
T PTZ00265 131 TLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLI 210 (1466)
T ss_pred HHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988653 5666666777777777666655555556666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000702 289 IVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFW-- 366 (1343)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~-- 366 (1343)
+.+..++.+++++..++..+..++..+.+.|.++||++||.|+.|+.+.+++++..+...+...+......+...+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 290 (1466)
T PTZ00265 211 YICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGF 290 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888899999999999999999999999998888876544433333333333332221111
Q ss_pred HHHHHHHHHHHHHHHHhCC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 000702 367 SSPIFVAAVTFGTSILLGA--------QLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQED 438 (1343)
Q Consensus 367 ~~~~~~~~~~f~~~~~~~~--------~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~ 438 (1343)
.....+.++++|.+.+..+ .++++.+++++........++..+...+..++.+.+|.+||.++++.++..+.
T Consensus 291 ~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~ 370 (1466)
T PTZ00265 291 ILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVEN 370 (1466)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1222344567888877754 57888888766555444555566666788999999999999999987653221
Q ss_pred cccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEEC-C--
Q 000702 439 ATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLC-G-- 515 (1343)
Q Consensus 439 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~-g-- 515 (1343)
.......+ ....|+++|++|+|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |
T Consensus 371 ~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 371 NDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449 (1466)
T ss_pred CCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc
Confidence 11111111 1136999999999964334579999999999999999999999999999999999999999999994 4
Q ss_pred -----------eEEEEcccccccCccHHHHhccCCC--------------------------------------------
Q 000702 516 -----------TAAYVSQSAWIQSGNIEENILFGSP-------------------------------------------- 540 (1343)
Q Consensus 516 -----------~i~~v~Q~~~l~~~ti~~Ni~~g~~-------------------------------------------- 540 (1343)
.++||+|+|.+|++||+|||.+|..
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccccc
Confidence 3799999999999999999999741
Q ss_pred --------------CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000702 541 --------------MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSA 606 (1343)
Q Consensus 541 --------------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~ 606 (1343)
.++++..++++.+++++.+..+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+
T Consensus 530 ~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred chhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 234567778888899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCC---------------------------------
Q 000702 607 VDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEG--------------------------------- 651 (1343)
Q Consensus 607 lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G--------------------------------- 651 (1343)
||+++++.+.+ .+.... +|+|+|+||||++.+..||+|++|++|
T Consensus 610 LD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 610 LDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred cCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 99999887765 455543 489999999999999899999999986
Q ss_pred --------------eEEEecChHHHHh-cCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCC
Q 000702 652 --------------RIIQAGKYDDLLQ-AGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNI 716 (1343)
Q Consensus 652 --------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1343)
+|+++|+|+||++ .++.|..++..+............. ..........................
T Consensus 689 ~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDND-KDSDMKSSAYKDSERGYDPDEMNGNS 767 (1466)
T ss_pred cccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc
Confidence 5999999999998 5888988886543221110000000 00000000000000000000000000
Q ss_pred cccccccccCCchhH-HHHHHHHHHHhhhhhhhhhHH-HHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000702 717 DNLAKEVQDGSSASE-QKAIKEKKKAKRSRKKQLVQE-EERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIA 794 (1343)
Q Consensus 717 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1343)
............... .....+. ....+.....+. +........+..+++++.......++ .+++.++..++..+
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 843 (1466)
T PTZ00265 768 KHENESASNKKSCKMSDENASEN--NAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI--IALSILVAGGLYPV 843 (1466)
T ss_pred cccccccccccccccccccccch--hccccchhhhhccccccccchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 000000000000000 0000000 000000000000 00000011122333333332222211 11222233333333
Q ss_pred hhhhhhhcCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cC
Q 000702 795 SNWWMAWANPQTEG-DQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDS--TP 871 (1343)
Q Consensus 795 ~~~~l~~~~~~~~~-~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~--~~ 871 (1343)
.++.++.+.+.... .........|.+++++++++..++.+++.++....+.+...+++.++++++++.|++|||+ ++
T Consensus 844 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~ 923 (1466)
T PTZ00265 844 FALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHA 923 (1466)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCC
Confidence 33333333221000 0001113345666777777788888999999999999999999999999999999999986 88
Q ss_pred hhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---
Q 000702 872 AGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMA--SSRELVRI--- 946 (1343)
Q Consensus 872 ~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~--~~r~l~rl--- 946 (1343)
+|++++|+++|++.+...+...+..++..++.+++.++++++++|.++++++|+.++...+.....+ ..++.++.
T Consensus 924 ~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1466)
T PTZ00265 924 PGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEIN 1003 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999998887766654443322222111 11121111
Q ss_pred ----------HHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 947 ----------VSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAF 1016 (1343)
Q Consensus 947 ----------~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1016 (1343)
+....+.....++|++.|++|||+|+.|+++.+++.+..+...+..........++....+++..+..++
T Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (1466)
T PTZ00265 1004 QPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSF 1083 (1466)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456788999999999999999999999999999888777665554444443333333333322222
Q ss_pred H-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCC-CCCCCCC
Q 000702 1017 C-MVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRP-PSSWPEN 1094 (1343)
Q Consensus 1017 ~-~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~-~~~wp~~ 1094 (1343)
+ .+....+..|.++.|.+..++.+.+....++..+...+.++.....+.+|+.++++.+++.+........ +...+..
T Consensus 1084 ~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1466)
T PTZ00265 1084 AYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIK 1163 (1466)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCC
Confidence 2 1222334578899988766665554444556777888899999999999999999865532211111110 0112346
Q ss_pred ceEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----------------------
Q 000702 1095 GTIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP----------------------- 1150 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~----------------------- 1150 (1343)
|.|+|+||+|+|++. ..+||+|+||+|+|||+|||||+||||||||+++|.|+|+|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 889999999999743 24799999999999999999999999999999999999999
Q ss_pred -------------------------------CcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCC
Q 000702 1151 -------------------------------ACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEH 1198 (1343)
Q Consensus 1151 -------------------------------~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~ 1198 (1343)
++|+|+|||+||+++++++||++|+||||||+||+|||||||.++ +++
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence 699999999999999999999999999999999999999999987 468
Q ss_pred CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000702 1199 SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT 1278 (1343)
Q Consensus 1199 sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~ 1278 (1343)
+|+||++|++.+++++||.++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||.+||+.|+++|++
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc--CCcEEEEeccCcccccccCEEEEEeC----CEE-eeecChhHHhhcCCcHHHHHHHHh
Q 000702 1279 EF--KDCTVCTIAHRIPTVIDSDLVLVLSD----GRV-AEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1279 ~~--~~~TvI~IaHrl~ti~~~DrIlvl~~----G~i-ve~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
.. +++|+|+||||++++.+||+|+||++ |++ +|.|+|+||+++++|.|++|++.+
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 73 68999999999999999999999999 995 599999999986689999999754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-93 Score=848.88 Aligned_cols=567 Identities=24% Similarity=0.351 Sum_probs=480.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 763 KVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEG-DQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVA 841 (1343)
Q Consensus 763 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~ 841 (1343)
...+.|.+...+++... +++.++.....++.|.+++...+.... ++..........+..++.++++++.++|.+++.
T Consensus 136 ~rl~~l~~~~~~~l~~a--~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~ 213 (716)
T KOG0058|consen 136 KRLLGLLKPEWKWLVAA--FVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQ 213 (716)
T ss_pred HHHHHHhchhHHHHHHH--HHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445554443333222 222334444455566655433322111 111122334456667777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 842 TFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLL 921 (1343)
Q Consensus 842 ~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1343)
+.+.+...+++..++++++++.+.|||.+.+|++++|++.|...+-+.++..+...+.+.+..++.++.|++.+|.+.++
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv 293 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLV 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000702 922 VIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEW 1001 (1343)
Q Consensus 922 ~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1001 (1343)
.+..+++...+.++|-+..|++.+...++-+.......|.+++++|||+|+.|+...++|.+.++...+.........-.
T Consensus 294 ~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~ 373 (716)
T KOG0058|consen 294 TLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGI 373 (716)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888888888899999999999999999999999999999999988887766554333333322
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCC
Q 000702 1002 LCLRMELLSTFVFAF-CMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPP 1080 (1343)
Q Consensus 1002 l~~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1080 (1343)
+....++.+...... ...-..+...|.+++|.+..++.|...+...+.++...|.++.+.+.|.+|++||++.++.-+.
T Consensus 374 f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~ 453 (716)
T KOG0058|consen 374 FFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL 453 (716)
T ss_pred hHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC
Confidence 333333333322221 1122233457899999999999999999999999999999999999999999999987665443
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcC
Q 000702 1081 VIEDSRPPSSWPENGTIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1081 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG 1159 (1343)
. +...|. .-+|.|+|+||+|+|+.. ..+||||+||+|+|||.||+|||||+||||++++|.|+|+|++|+|++||
T Consensus 454 ~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 454 T--GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred C--Cccccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 2 111221 468999999999999754 34699999999999999999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1160 IDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1160 ~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
+||++++.+.||++||+|.|||+||+|||||||.++ .+.+||||.+|++.++.++||.++|+||||.|||.|..|||||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 999999999999999999999999999999999876 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHH
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eL 1318 (1343)
||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+|||||+||+.+|+|+|+++|+|+|.|+|+||
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHhcc
Q 000702 1319 LEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1319 l~~~~~~f~~l~~~~~~ 1335 (1343)
+++++|.|++|++++..
T Consensus 690 l~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 690 LSKPNGLYAKLVQRQLD 706 (716)
T ss_pred hhCcccHHHHHHHHhcc
Confidence 99999999999987743
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-85 Score=814.35 Aligned_cols=549 Identities=26% Similarity=0.375 Sum_probs=491.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 780 LIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSV 859 (1343)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~v 859 (1343)
-+++..++.+++.++.++...+..|..-.............+++++++...++.++|.+++.+.+.+....+-.++++++
T Consensus 158 ~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hl 237 (709)
T COG2274 158 EVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHL 237 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455667778888888888877765433333333444455566667778899999999999999999999999999999
Q ss_pred hccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 860 FRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMAS 939 (1343)
Q Consensus 860 l~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 939 (1343)
++.|++||+++++|++++|+. |++.|...+...+...+..++..+..+++|++++|+++++++..++++..+.....+.
T Consensus 238 l~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~ 316 (709)
T COG2274 238 LRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316 (709)
T ss_pred HcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 7888888888888888888888899999999999999998888777777777777777
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 940 SRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMV 1019 (1343)
Q Consensus 940 ~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1019 (1343)
.|+..+......+...++..|++.|++|||+.+.|.++..++.+..++..+..+.......|......++..+...++..
T Consensus 317 l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~ 396 (709)
T COG2274 317 LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILW 396 (709)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888889999999999999999999999999999999999999998888888888888877765444333
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEE
Q 000702 1020 L-LVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIE 1098 (1343)
Q Consensus 1020 ~-~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1098 (1343)
+ ...+..|.++.|.+..+.+.+..+.+++..++..+.+++....+.+|+.+..+.|+|.+.. ..+...|+..|.|+
T Consensus 397 ~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~~~g~I~ 473 (709)
T COG2274 397 FGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPKLQGEIE 473 (709)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccccCceEE
Confidence 3 4455688999999999999999999999999999999999999999999999999886532 21344567789999
Q ss_pred EEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeec
Q 000702 1099 LIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIP 1178 (1343)
Q Consensus 1099 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVp 1178 (1343)
|+||+|+|+++.|++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++||
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 000702 1179 QDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257 (1343)
Q Consensus 1179 Qdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlL 1257 (1343)
||++||+||||||+...+ +.+|||+++|++.+++++||.++|.||||+|||+|.||||||||||+|||||+++|+||||
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 999999999999998765 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1258 DEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
||||||||++||+.|++.|.+..++||+|+||||++++++||||+|||+|+|+|.|+|+||++. +|.|+++++.+
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 89999998764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-81 Score=789.54 Aligned_cols=544 Identities=28% Similarity=0.383 Sum_probs=457.5
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000702 783 LAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRA 862 (1343)
Q Consensus 783 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~ 862 (1343)
++.++.....+..++++.+..+... ........+...++++.++..++.++..++..+.+.+...+++.++++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 21 LLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555666666666664443221 11112233444455555566677777777777888999999999999999999
Q ss_pred ccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 863 PMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRE 942 (1343)
Q Consensus 863 p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~ 942 (1343)
|+++|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.+...++.+..++
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998886666667888899999999999998888777766666666666666688
Q ss_pred HHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000702 943 LVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMV-LL 1021 (1343)
Q Consensus 943 l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~-~~ 1021 (1343)
..+......+.+.+.+.|+++|+++||+|+.++...+++....+...+..........++.....++..+...++.. ..
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999988777777766666555444444444433333333333222222 22
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEE
Q 000702 1022 VSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELID 1101 (1343)
Q Consensus 1022 ~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~n 1101 (1343)
.....+.++.|.+..++.|...+..++..+...+..++....+.||+.++.+.+++... ...+ .++..|.|+|+|
T Consensus 259 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~ 333 (567)
T COG1132 259 FLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFEN 333 (567)
T ss_pred HHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEE
Confidence 23456778999999999999999999999999999999999999999999987554221 1111 345668899999
Q ss_pred EEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCc
Q 000702 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181 (1343)
Q Consensus 1102 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp 1181 (1343)
|+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||
T Consensus 334 vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 334 VSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred EEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 99999863 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhcCCCCC-CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCC
Q 000702 1182 NLFEGTIRCNLDPLEE-HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260 (1343)
Q Consensus 1182 ~lF~gTIr~NLdp~~~-~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEa 1260 (1343)
+||+||||+||+++++ ++|||+++|++.++++|+|.++|+||||.|||+|.+||||||||+|||||++++|+|||||||
T Consensus 413 ~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEa 492 (567)
T COG1132 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEA 492 (567)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 9999999999998865 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhcc
Q 000702 1261 TASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1261 Ts~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~~ 1335 (1343)
||++|++||+.|++++++..+++|+|+||||++|+.+||+|+|||+|+|+|+|+|+||+++ +|.|++|++++..
T Consensus 493 TSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~~ 566 (567)
T COG1132 493 TSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGG 566 (567)
T ss_pred ccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhhc
Confidence 9999999999999999988889999999999999999999999999999999999999986 8999999998753
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=778.02 Aligned_cols=563 Identities=19% Similarity=0.246 Sum_probs=451.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 765 YLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTE-GDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATF 843 (1343)
Q Consensus 765 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~ 843 (1343)
++.|++...+... +.+++.++..++.+..++.+++..+... ..........++.+++++.++..++.+++.++....
T Consensus 13 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 13 LKQQSKPAKRWLN--LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554433222 2333445555556666666655443211 011111122334445555556677778888888899
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 844 GLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVI 923 (1343)
Q Consensus 844 ~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 923 (1343)
+.+...+++.++++++++.|..||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++++
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 170 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILL 170 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999988888889999999999887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000702 924 PMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLC 1003 (1343)
Q Consensus 924 p~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~ 1003 (1343)
..+++.+++...+.+..++..+......+.+.+.+.|+++|+++||+|++|+++.+++.+..+...+..........+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 171 GTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777777777778888899999999999999999999999999998888877766655444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 000702 1004 LRMELLSTFVFAFCMVLLVSFPHGAIDPSMA---------GLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQI 1074 (1343)
Q Consensus 1004 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~ 1074 (1343)
....++..+...++.++......|.++.|.+ .+++.++..+..++..+...+..+.....+.+|+.++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 251 AVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444333322221111111111244444432 2333555677888999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcce
Q 000702 1075 PGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154 (1343)
Q Consensus 1075 ~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~ 1154 (1343)
|++.+.. .. .+...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+
T Consensus 331 ~~~~~~~--~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 331 PLAHPQQ--GE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred CCcccCC--Cc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 6543211 11 01111234679999999988654 56999999999999999999999999999999999999 99999
Q ss_pred EEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCC
Q 000702 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1155 I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1233 (1343)
|++||+|+++++.+++|++|+||||||+||+|||||||..+ ++++|+|+++|++.+++++++.++|+||||.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99999999999999999999999999999999999999987 46999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeec
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1234 LSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g 1313 (1343)
|||||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ChhHHhhcCCcHHHHHHHHhcc
Q 000702 1314 TPGRLLEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1314 ~p~eLl~~~~~~f~~l~~~~~~ 1335 (1343)
+|+||+++ +|.|++|++.+..
T Consensus 566 ~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 566 DYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred CHHHHHhc-chHHHHHHHHhhc
Confidence 99999975 6899999987643
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-79 Score=784.00 Aligned_cols=542 Identities=22% Similarity=0.308 Sum_probs=454.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 780 LIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSV 859 (1343)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~v 859 (1343)
..+++.++..+..++.+++.+...+..............+.+++++.++..++.+++.+++...+.+...+++.++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777755543211111111222344455555667777888888999999999999999999999
Q ss_pred hccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 860 FRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMAS 939 (1343)
Q Consensus 860 l~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 939 (1343)
++.|+.||++++.|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..+++.+++.+.+.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887776666666677777777
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000702 940 SRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAI---EWLCLRMELLSTFVFAF 1016 (1343)
Q Consensus 940 ~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~wl~~~l~~~~~~~~~~ 1016 (1343)
.++..+......+...+++.|+++|++|||+|+.|+++.+++.+..+...+......... .|....+..+..+++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il- 403 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVL- 403 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 777777777788888999999999999999999999999999988887766554433322 2322222222221111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCce
Q 000702 1017 CMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGT 1096 (1343)
Q Consensus 1017 ~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~ 1096 (1343)
.+.......|.+++|.+..++.|...+..++..+...+.++.....+.+|+.++.+.+++.+.. . ....++..|.
T Consensus 404 -~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~ 478 (711)
T TIGR00958 404 -YYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGL 478 (711)
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCe
Confidence 1122234578899999999999999999999999999999999999999999999876553321 1 1122345688
Q ss_pred EEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1097 IELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
|+|+||+|+|++. .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 558 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce
Confidence 9999999999753 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCE
Q 000702 1176 IIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1176 iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~I 1254 (1343)
+|||||++|+|||||||..+ ++.+|+++++|++.+++++++.++|+||||.+||+|.+||||||||||||||++++|+|
T Consensus 559 ~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I 638 (711)
T TIGR00958 559 LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638 (711)
T ss_pred EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999966 46889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHH
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1255 LlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~ 1330 (1343)
||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ +|.|++|+
T Consensus 639 LILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 639 LILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred EEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchHhcC
Confidence 99999999999999999999 345679999999999999999999999999999999999999975 68999874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=718.87 Aligned_cols=551 Identities=22% Similarity=0.292 Sum_probs=466.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 125 LALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILG 204 (1343)
Q Consensus 125 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (1343)
.++.+.++.|+.+..+.++.++.....+..|.++++++|.+...........-...++....++.+++.....+.....+
T Consensus 137 rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~ 216 (716)
T KOG0058|consen 137 RLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAG 216 (716)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999999999988662211111112233445556666776666666667788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 205 MHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYS-WYLHDIWMLPLQIILALAILYKNVGIASVATLI 283 (1343)
Q Consensus 205 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~ 283 (1343)
.++-..+|..+|+++++...++++++++||++++++.|++.+.+.+ .++.....+.++.+.++.+|+..-...+++.++
T Consensus 217 ~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i 296 (716)
T KOG0058|consen 217 ERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998754 478888888889988888887766666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 284 ATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITF 363 (1343)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 363 (1343)
.+++++.+..+++++.++..++.+++..+-.+...|.+.+||+||+|+.|+.-.++..+.-+.-++..+|......+...
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~ 376 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHh
Confidence 77888888999999999999999999999999999999999999999999755444443322222222222222222111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 000702 364 I--FWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATI 441 (1343)
Q Consensus 364 ~--~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~ 441 (1343)
. +......++++.+|.+++..+.+|.|.+.+++.|-..+..++..+...++.++++..|.+|+.++++.++.-+....
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~ 456 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT 456 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc
Confidence 1 12233456778899999999999999999999999999999999999999999999999999999987665433222
Q ss_pred ccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------
Q 000702 442 VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------ 515 (1343)
Q Consensus 442 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 515 (1343)
..|. ...+.|+|+||+|+|+..++.++|+|+||+|+|||.+|+||||||||||+.++|.++|+|++|+|.+||
T Consensus 457 ~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 457 LAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI 535 (716)
T ss_pred cccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc
Confidence 2222 235689999999999988888999999999999999999999999999999999999999999999999
Q ss_pred -------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 -------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 -------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
+||+|.|+|.+|++||+|||.+|.+ .++++++++.+.+..++.+..+|+|++|.|||+|..|||||||||||
T Consensus 536 ~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 536 NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHH
Confidence 4899999999999999999999987 57888999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC-
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG- 666 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~- 666 (1343)
||||++||.||||||+|||||+++ +++.++.+...++++|||+|+||++++++||+|+++++|++++.|+|+|+++..
T Consensus 616 ARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcc
Confidence 999999999999999999999998 456688888888999999999999999999999999999999999999999887
Q ss_pred ccHHHHHHHHH
Q 000702 667 TDFNALVSAHH 677 (1343)
Q Consensus 667 ~~~~~~~~~~~ 677 (1343)
+.|.++++.+.
T Consensus 695 gly~~Lv~~q~ 705 (716)
T KOG0058|consen 695 GLYAKLVQRQL 705 (716)
T ss_pred cHHHHHHHHhc
Confidence 67888876543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=779.04 Aligned_cols=544 Identities=22% Similarity=0.270 Sum_probs=459.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 780 LIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSV 859 (1343)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~v 859 (1343)
.++++.++..++.++.++.+....|.............+..+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666667777766655443211111111223344455556667778888999999999999999999999999
Q ss_pred hccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 860 FRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMAS 939 (1343)
Q Consensus 860 l~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 939 (1343)
++.|+.||++.++|++++|++ |++.+++.+...+...+...+.+++.++++++++|++.++++.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 7899988888877777777777778888889999998877766655555555555555
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 940 SRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMV 1019 (1343)
Q Consensus 940 ~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1019 (1343)
.+...+......+...+++.|+++|+.|||+|+.|+++.+++.+..+...+..+.......|.......+..+...++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666778899999999999999999999999999999999888888877777777766666554433332222
Q ss_pred -HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEE
Q 000702 1020 -LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIE 1098 (1343)
Q Consensus 1020 -~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1098 (1343)
.......|.++.|.+..+..+...+..++..+...+.++.....+.+|+.++.+.++|.+.. ... ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--CCCCCceEE
Confidence 22334578899999999999999999999999999999999999999999999876654311 111 123457899
Q ss_pred EEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeec
Q 000702 1099 LIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIP 1178 (1343)
Q Consensus 1099 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVp 1178 (1343)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999866678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 000702 1179 QDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258 (1343)
Q Consensus 1179 Qdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLD 1258 (1343)
|||.+|+|||||||.++++.+|+++++|++.+++++++.++|+||||++||+|.+|||||||||+||||++++|+|||||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999987668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHH
Q 000702 1259 EATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332 (1343)
Q Consensus 1259 EaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~ 1332 (1343)
||||+||++||+.|++.|++. ++|+|+||||++++.+||||+||++|+|+|.|+|+||++ ++|.|++|+++
T Consensus 614 EpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~-~~~~y~~l~~~ 684 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLARR 684 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh-CCcHHHHHHHh
Confidence 999999999999999999876 689999999999999999999999999999999999997 47999999875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-78 Score=778.85 Aligned_cols=563 Identities=21% Similarity=0.259 Sum_probs=469.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 762 MKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVA 841 (1343)
Q Consensus 762 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~ 841 (1343)
++.++.+++...+.. ..++++.++..++.++.++++....+.............+..+++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGAL--LYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555433222 233344455566666677777655543211111111223344455555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 842 TFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLL 921 (1343)
Q Consensus 842 ~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1343)
..+.+...+++.++++++++.|++||++.++|++++|++.| ..+...+...+..++..++.+++.++++++++|++.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 57888888888888888888888889999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000702 922 VIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEW 1001 (1343)
Q Consensus 922 ~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1001 (1343)
++.++++++++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..+...+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777888999999999999999999999999999998888877777666666666
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCC
Q 000702 1002 LCLRMELLSTFVFAFCM-VLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPP 1080 (1343)
Q Consensus 1002 l~~~l~~~~~~~~~~~~-~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1080 (1343)
......++..+...++. +.......|.++.|.+..+..+...+..++..+...+.++.....+.+|+.++.+.++|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 66655555443332222 22333457889999999999999999999999999999999999999999999987766432
Q ss_pred CCCC--C-CCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEE
Q 000702 1081 VIED--S-RPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157 (1343)
Q Consensus 1081 ~~~~--~-~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~I 1157 (1343)
.... . .....++..|.|+|+||+|+|++..+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456889999999999876678999999999999999999999999999999999999999999999
Q ss_pred cCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCCh
Q 000702 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1158 dG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
||+|+++++.+++|++|+||||||.+|+|||||||..++ +.+|+++++|++.+++++++.++|+||||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999998764 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChh
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~ 1316 (1343)
||||||+||||++++|+|||||||||+||.+||+.|.+.|++ .++|+|+||||++++.+||||+||++|+|+|.|+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred HHhhcCCcHHHHHH
Q 000702 1317 RLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1317 eLl~~~~~~f~~l~ 1330 (1343)
||+++ +|.|++|+
T Consensus 697 ~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAV-GGAYARLI 709 (710)
T ss_pred HHHHc-CCcHHHHh
Confidence 99974 78999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-78 Score=777.73 Aligned_cols=561 Identities=20% Similarity=0.260 Sum_probs=461.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 762 MKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVA 841 (1343)
Q Consensus 762 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~ 841 (1343)
++.++.+++...+. +..++++.++..++.++.++++..+.|.............+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543332 2233444556666777778877766553221111111122333344445556677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 842 TFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLL 921 (1343)
Q Consensus 842 ~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1343)
..+.+...+++.++++++++.|+.||++.++|++++|++ |+..+...+...+..++..++.+++.++++++++|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888877777777777777777777778888899998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000702 922 VIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEW 1001 (1343)
Q Consensus 922 ~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1001 (1343)
++..+++++.+...+.+..++..+......+...+++.|+++|++|||+|+.|+++.+++.+..+...+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777888888888889999999999999999999999999999888887776666554444444
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCC
Q 000702 1002 LCLRMELLSTFVFA-FCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPP 1080 (1343)
Q Consensus 1002 l~~~l~~~~~~~~~-~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1080 (1343)
......++..+... +..+.......|.+++|.+..+..+...+..++..+...+.++.....+++|+.++.+.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 33333333222211 11122233457899999999999999999999999999999999999999999999987766432
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCe
Q 000702 1081 VIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI 1160 (1343)
Q Consensus 1081 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~ 1160 (1343)
.. .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 461 ~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 KK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 11 111234456899999999999744 57999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhcceeecCCccccCCchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1161 DISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1161 di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
|+++++.+++|++|+||||||++|+|||||||..+ ++++|+++++|++.+++++++.++|+||||+++|+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999976 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHH
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eL 1318 (1343)
||||+||||++++|+|||||||||+||.+||+.|++.|++ .+++|+|+||||++++..||||+||++|+++|.|+|+||
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987 478999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHH
Q 000702 1319 LEDKSSMFLKLVT 1331 (1343)
Q Consensus 1319 l~~~~~~f~~l~~ 1331 (1343)
+++ +|.|++|++
T Consensus 696 ~~~-~~~y~~l~~ 707 (708)
T TIGR01193 696 LDR-NGFYASLIH 707 (708)
T ss_pred Hhc-CCcHHHHhh
Confidence 975 689999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-78 Score=760.02 Aligned_cols=546 Identities=25% Similarity=0.359 Sum_probs=450.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 781 IILAQVLFQFLQIASNWWMAWANPQTEGDQPKVN--PMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRS 858 (1343)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 858 (1343)
.+++.++..++.+..++++.+..+......+... ...+..+++++.++..++.+++.++....+.+.+.+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666777777765543211111101 11122234444445566777888888899999999999999999
Q ss_pred HhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 859 VFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMA 938 (1343)
Q Consensus 859 vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 938 (1343)
++++|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++++..+++.+.+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888999999998876655444444444444455
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000702 939 SSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWL-CLRMELLSTFVFAFC 1017 (1343)
Q Consensus 939 ~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 1017 (1343)
..+...+......+...+++.|+++|+.+||+|+.++++.+++....+...+..+.......+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666677788999999999999999999999999998887776666554443333332 222333333222221
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceE
Q 000702 1018 MVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTI 1097 (1343)
Q Consensus 1018 ~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I 1097 (1343)
.++......|.++.|.+..+..|...+..++..+...+..++....+.+|+.++.+.++++.. .. ..++..+.|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeE
Confidence 111112357889999999999999999999999999999999999999999999876544221 11 122345789
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++.+|++|+||
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 000702 1178 PQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257 (1343)
Q Consensus 1178 pQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlL 1257 (1343)
||||.+|+||||+||.++++++|++++++++++|+++++.++|+||||.++|+|.+||||||||+||||||+++|+||||
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhc
Q 000702 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1258 DEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~ 1334 (1343)
|||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||+++ ++.|++|++.+.
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHh
Confidence 9999999999999999999998889999999999999999999999999999999999999986 699999998664
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-77 Score=753.35 Aligned_cols=545 Identities=22% Similarity=0.282 Sum_probs=462.3
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000702 784 AQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMV-LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRA 862 (1343)
Q Consensus 784 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~ 862 (1343)
+.++..+.....+++++...+...... ...... +...++++.++..++.+++.++....+.+....++.++++++++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 33 ALILNAASDTFMLSLLKPLLDDGFGKA-DRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444555555554443221111 111112 222233455556677778888888889999999999999999999
Q ss_pred ccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 863 PMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRE 942 (1343)
Q Consensus 863 p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~ 942 (1343)
|..+|++...|++++|+++|++.+...+...+..++..++.+++.++++++.+|+++++++..+++.+++..++.+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877776666666666667777777
Q ss_pred HHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000702 943 LVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL-L 1021 (1343)
Q Consensus 943 l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~ 1021 (1343)
..+......+...+++.|.++|+.+||+|+.++.+.+++.+..+...+..........|......++..+...++..+ .
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888889999999999999999999999999999999988888777777666776666666555433322222 2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEE
Q 000702 1022 VSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELID 1101 (1343)
Q Consensus 1022 ~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~n 1101 (1343)
.....|.+++|.+.+++++...+..++..+...+..+.....+.+|+.++.+.+++.+.. . ....|..+.|+|+|
T Consensus 272 ~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~--~~~~~~~~~i~~~~ 346 (582)
T PRK11176 272 FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG---K--RVIERAKGDIEFRN 346 (582)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC---C--cCCCCCCCeEEEEE
Confidence 334568899999999999999999999999999999999999999999999876553211 1 11123456899999
Q ss_pred EEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCc
Q 000702 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181 (1343)
Q Consensus 1102 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp 1181 (1343)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|+||||||
T Consensus 347 vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred EEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 99999876678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeC
Q 000702 1182 NLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259 (1343)
Q Consensus 1182 ~lF~gTIr~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDE 1259 (1343)
++|+||||+||..+ ++++|++++++++.+++++++.++|+||||++||+|.+|||||||||+|||||+++|+||||||
T Consensus 427 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE 506 (582)
T PRK11176 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_pred eeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999999999864 3479999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhcc
Q 000702 1260 ATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1260 aTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~~ 1335 (1343)
|||+||++|++.|.+.|++..+++|+|+||||++++..||||++|++|+|+|.|+|++|+++ ++.|++|++++..
T Consensus 507 ptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHhc
Confidence 99999999999999999998889999999999999999999999999999999999999975 6899999987643
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-76 Score=742.60 Aligned_cols=544 Identities=19% Similarity=0.239 Sum_probs=444.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCC-CCCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 783 LAQVLFQFLQIASNWWMAWANPQTE-GDQP---KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRS 858 (1343)
Q Consensus 783 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 858 (1343)
++.++..++.+..++.+++..+... .... ..........+.++.++..++.++..++....+.+....++.+++++
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ 102 (574)
T PRK11160 23 LLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSK 102 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666544211 1110 00011112233344455667777888888889999999999999999
Q ss_pred HhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000702 859 VFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVAC-LWMQKYYM 937 (1343)
Q Consensus 859 vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~-~~~~~~~~ 937 (1343)
+++.|+.||++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|.+.++++..+++. ..+..++.
T Consensus 103 l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~ 182 (574)
T PRK11160 103 LLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFY 182 (574)
T ss_pred hhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887664444333 33445555
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 938 ASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFC 1017 (1343)
Q Consensus 938 ~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 1017 (1343)
+..+...+......+.+.+.+.|+++|+++||+|+.++++.+++.+..+...+..........+......++..+...++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 262 (574)
T PRK11160 183 RLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLM 262 (574)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777888889999999999999999999999999999998888877776666655555555555544333322
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCce
Q 000702 1018 MVLLVSFPHGAIDPSMAGLAVTYGL-NLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGT 1096 (1343)
Q Consensus 1018 ~~~~~~~~~g~~~~~~~gl~l~~~~-~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~ 1096 (1343)
..+......|.++.|.+..++.|.. ....++..+...+..+.....+.+|+.++.+.+++.+.. ...+ ..+..+.
T Consensus 263 ~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~--~~~~~~~ 338 (574)
T PRK11160 263 LWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTST--AAADQVS 338 (574)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccC--CCCCCCe
Confidence 2222112356777877666666643 344566777778888889999999999999876553211 0111 1134578
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|++|++
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 418 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence 99999999997655579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
|||||++|+||||+||.... +.+|+++++|++.+++++++.+ |+||||++||+|.+||||||||+|||||++++|+||
T Consensus 419 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 419 VSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred EcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998754 6899999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHH
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~ 1332 (1343)
|||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+|+||+++ +|.|++|++.
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 999999999999999999999998889999999999999999999999999999999999999974 7999999863
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=761.77 Aligned_cols=551 Identities=22% Similarity=0.259 Sum_probs=455.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 764 VYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATF 843 (1343)
Q Consensus 764 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~ 843 (1343)
.++.+++...+. +..++++.++..++.++.++.++...|.............+..+++++.++..++.+++.++....
T Consensus 137 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 137 WFWSTLKESWPL--YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433222 223344455556666777777765554321111111122233344444555677888899999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 844 GLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVI 923 (1343)
Q Consensus 844 ~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 923 (1343)
+.+...+++.++++++++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|+++++++
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 292 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPL 292 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999998 789999999999 7999999998888887777777777888888899999887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000702 924 PMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLC 1003 (1343)
Q Consensus 924 p~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~ 1003 (1343)
..+++++.+..++.+..++..+......+...+++.|+++|+++||+|+.|+.+.+++.+..+...+..+.......+..
T Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (694)
T TIGR03375 293 VAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLAT 372 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666777777777888899999999999999999999999999999888887777666655555555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCC
Q 000702 1004 LRMELLSTFVFAFC-MVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVI 1082 (1343)
Q Consensus 1004 ~~l~~~~~~~~~~~-~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1082 (1343)
....++..+...++ .+....+..|.++.|.+..++++...+..++..+...+.++.....+.+|+.++.+.++|.+..
T Consensus 373 ~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~- 451 (694)
T TIGR03375 373 NFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG- 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-
Confidence 44444443322221 1222334578899999999999999999999999999999999999999999999877664321
Q ss_pred CCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeec
Q 000702 1083 EDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDI 1162 (1343)
Q Consensus 1083 ~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di 1162 (1343)
.......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 452 --~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 452 --TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred --CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 111111234578999999999986666799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1163 STIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1163 ~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
++++++++|++|++|||||++|+|||||||.+++ +++|+|+++|++.+++++++.++|+||||.+||+|.+||||||||
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999775 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||||+||++|+++|.|+|+||+++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=692.10 Aligned_cols=514 Identities=22% Similarity=0.300 Sum_probs=449.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhh
Q 000702 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFR 893 (1343)
Q Consensus 814 ~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~ 893 (1343)
....+++.++++.++..+..+.+.......+.++-..+|.++++++.+.+..+-...|+|+....++.-++.++..+...
T Consensus 38 ~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 38 SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheee
Q 000702 894 LGGFASTTIQLVGIIGVMTMVTWQVLLL---VIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRG 970 (1343)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIra 970 (1343)
+..++.+.+..+.+++.+++.+|...++ ..|++++++++. ...++...+..-.+...+.+||-+.+.|+.|+|+
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv---g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~ 194 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV---GLAAKDASEKQFSALARLSGHFLDRLRGLETLRA 194 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999996554 456666665543 2334444555566677889999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHHHHHHH
Q 000702 971 FGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVS-FPH-GAIDPSMAGLAVTYGLNLNARL 1048 (1343)
Q Consensus 971 f~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~-~~~-g~~~~~~~gl~l~~~~~~~~~l 1048 (1343)
|+..+...++..+...++.+........+---+..++++..+-++++++.+.. +.. |.++-...-+++..+--+..++
T Consensus 195 f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~Pl 274 (559)
T COG4988 195 FGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPL 274 (559)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHH
Confidence 99999999999888888888877777766666778888888777666655432 334 6777777777888888999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEE
Q 000702 1049 SRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIG 1128 (1343)
Q Consensus 1049 ~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~Gekvg 1128 (1343)
..+...|....+...+.+.+..+.+.|.+.+...+ .....|....+|+.+|++++|+++. ++++|+||+++|||++|
T Consensus 275 R~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~ta 351 (559)
T COG4988 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTA 351 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEE
Confidence 99999999999998999999999987765432211 1122333445677779999998775 79999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHH
Q 000702 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEAL 1207 (1343)
Q Consensus 1129 IVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL 1207 (1343)
|||+||||||||+++|+|+.+|++|+|.+||+|+++++.+++|+++++|||+|++|+|||||||..++ +.+|+||++|+
T Consensus 352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al 431 (559)
T COG4988 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAAL 431 (559)
T ss_pred EECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 58999999999
Q ss_pred HHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000702 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCT 1287 (1343)
Q Consensus 1208 ~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~ 1287 (1343)
+++++.+++.. |+||||.+||+|.+|||||+|||+||||++++++++++|||||+||.|||+.|++.|.+.++++|||+
T Consensus 432 ~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 432 DQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred HHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhcc
Q 000702 1288 IAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1288 IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~~ 1335 (1343)
||||++.+.++|+|+|||+|+++|.|+|++|.++ +|.|++|+.++.+
T Consensus 511 itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 511 ITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred EEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 9999999999999999999999999999999974 7999999988654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-79 Score=676.79 Aligned_cols=496 Identities=22% Similarity=0.321 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 000702 829 SSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGII 908 (1343)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~ 908 (1343)
+.++.-+|+++.......+.+++-.++++++....++|+-...+|+++.-+.+-.+.+. .+...+.++...++.+..++
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 35677788888888899999999999999999999999999999998887777776666 55555566666666665555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHH
Q 000702 909 GVMT-MVTWQVLLLVIPMAVACLWM----QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLY 983 (1343)
Q Consensus 909 ~~~~-~~~~~~~~~~ip~~~~~~~~----~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~ 983 (1343)
+..+ ..+||+.++++.+..+|.++ ..+-.+..|.+...+.++ .+.-.+++-+.+|+|-|++|+...+++.+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 5443 46788888777776666543 222223333333333333 34456889999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000702 984 LLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL-LVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKI 1062 (1343)
Q Consensus 984 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~ 1062 (1343)
.++.+++.-+........++..-+.+..+-.....++ +..+..+..+.|...++.+|.+++..+++|+...+..++++.
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 9999999888877777666666555544433333222 233447788899999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHH
Q 000702 1063 ISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQ 1142 (1343)
Q Consensus 1063 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~ 1142 (1343)
.-.|++.+.++.++|-. +....++---.+|.|+|+||+|.|+|+. |||+||||++.||+.||+|||||+||||+++
T Consensus 507 iDmEnmfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred hhHHHHHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHH
Confidence 99999999997655432 2111222223579999999999999875 6999999999999999999999999999999
Q ss_pred HHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccC
Q 000702 1143 ALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQ 1221 (1343)
Q Consensus 1143 ~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~ 1221 (1343)
+|+|++|.++|+|+|||+||+.+..+.||+.||+||||.+||++||..||.+.. .++|||+.+|++.+++||.|.+.|+
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999999998764 6899999999999999999999999
Q ss_pred CCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEE
Q 000702 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLV 1301 (1343)
Q Consensus 1222 gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI 1301 (1343)
||+|.|||+|-.||||||||+|+||++||+|.|++||||||+||..||+.||.+|.+..+++|.|+|||||+||.++|.|
T Consensus 663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~I 742 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLI 742 (790)
T ss_pred hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1302 LVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1302 lvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
+|+++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 743 Lvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999999999999654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-78 Score=754.42 Aligned_cols=514 Identities=23% Similarity=0.310 Sum_probs=435.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhh
Q 000702 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFR 893 (1343)
Q Consensus 814 ~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~ 893 (1343)
....+.+.|+.++++..+..++...++.+.+.|...++|.+.++++||++++|||++..|++..|+++|++.+++.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 34566777788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCc
Q 000702 894 LGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQ 973 (1343)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~ 973 (1343)
+..+++.+.++++.+++.++..|.+.++++++.++.......+.+..-.....+..+.+..-+...|++.+++|+.+|+.
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999999999999999999999999988887777777666666666666667777777788899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 000702 974 EKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL----LVSFPHGAIDPSMAGLAVTYGLNLNARLS 1049 (1343)
Q Consensus 974 ~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~----~~~~~~g~~~~~~~gl~l~~~~~~~~~l~ 1049 (1343)
|++..++|.+.++...+....... |.++-..+.-.++.+..+.. ...+..+..++|.+...+...+.-...+.
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~g~---~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLg 305 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKKGL---FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLG 305 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhh
Confidence 999999999988887765433221 22222222111111111111 11222455666665544444444444555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCC-CcccccceeEecCCCEEE
Q 000702 1050 RWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENL-PLVLHGITCAFPGGKKIG 1128 (1343)
Q Consensus 1050 ~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~is~~I~~Gekvg 1128 (1343)
........+.+...+..++.+.++..+........... .-..+|.|+|+||+|+|+..+ .++|+|+||+|++||.||
T Consensus 306 qa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~va 383 (1228)
T KOG0055|consen 306 QASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVA 383 (1228)
T ss_pred ccccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEE
Confidence 55666777788889999999988744332221111111 123579999999999997653 379999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHH
Q 000702 1129 IVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEAL 1207 (1343)
Q Consensus 1129 IVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL 1207 (1343)
+||+|||||||++++|.|+|+|++|+|+|||.||++++.++||++||+|.|+|+||++||+|||.++. +.|++|+.+|+
T Consensus 384 lVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 384 LVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAA 463 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 78999999999
Q ss_pred HHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000702 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCT 1287 (1343)
Q Consensus 1208 ~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~ 1287 (1343)
+.++.++||.++|+||||.+||+|..||||||||+||||||+++|+||+||||||+||+++|+.+|++|++..+|+|.|+
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv 543 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIV 543 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1288 IAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1288 IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
|||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++||+.+
T Consensus 544 VaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 544 VAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred EeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 99999999999999999999999999999999976 9999999765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-75 Score=719.71 Aligned_cols=548 Identities=24% Similarity=0.346 Sum_probs=468.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 122 TPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVD 201 (1343)
Q Consensus 122 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (1343)
..+.++..++.|++.+.-.++..++..++.++.|++.+.++|.+-...+ ....+.+++++.+..+++.++.....+...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888899999999999999999999999999999998764432 234556666777777888777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000702 202 ILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDI-WMLPLQIILALAILYKNVGIASV 279 (1343)
Q Consensus 202 ~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~-~~~~~~i~~~~~~l~~~~g~~~l 279 (1343)
+++.|+...+...+|+|++++|..++++.++|++++++. |.++|.++.. .+... ...++ .++.+.+|+.+-+..++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~-~~i~l~vm~~ys~~L~l 297 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLF-ALIFLAVMFLYSWKLTL 297 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999985 8999998764 33333 33343 44444555566667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 280 ATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQA 359 (1343)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 359 (1343)
++++.+++++.+..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+..+...+......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999998887776665444444333
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 000702 360 FITFIFW--SSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQE 437 (1343)
Q Consensus 360 ~~~~~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~ 437 (1343)
....+.. ....-+.+++||++.++++.+|.|.++++.++.+.+..|+..+.+.+..+++++++.+|+.++++.|.+.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 3322211 12223456899999999999999999999999999999999999999999999999999999999887644
Q ss_pred ccccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--
Q 000702 438 DATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-- 515 (1343)
Q Consensus 438 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 515 (1343)
........+...+.|+++|++|+|.++ ++++|+|+||+|++||.+||||+||||||||+|+|+|.|+|++|+|.+||
T Consensus 458 ~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 458 GDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred cccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 322111222334679999999999764 34899999999999999999999999999999999999999999999999
Q ss_pred -----------eEEEEcccccccCccHHHHhccCCCC-CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 516 -----------TAAYVSQSAWIQSGNIEENILFGSPM-DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 516 -----------~i~~v~Q~~~l~~~ti~~Ni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
.++||+|++.+|+|||+|||.+|+|. +.++..++++.++.++++..+|.|++|.|||+|.+|||||||
T Consensus 537 l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 48999999999999999999999985 457788888888999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|++||||++++|+|+||||||||||+++++.+.++ +....+|+|+|+||||++.+..||+|+||++|+|+++|+|+|++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999988876 55667799999999999999999999999999999999999999
Q ss_pred hcCccHHHHHH
Q 000702 664 QAGTDFNALVS 674 (1343)
Q Consensus 664 ~~~~~~~~~~~ 674 (1343)
+.++.|.+++.
T Consensus 696 ~~~g~y~~l~~ 706 (709)
T COG2274 696 AQGGLYARLYQ 706 (709)
T ss_pred HhcChHHHHHh
Confidence 99888888764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=737.71 Aligned_cols=546 Identities=24% Similarity=0.334 Sum_probs=473.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000702 783 LAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRA 862 (1343)
Q Consensus 783 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~ 862 (1343)
++.++..++..+.+++++...+.............+..+++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 100 (571)
T TIGR02203 21 VAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGL 100 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555555666666543332111111112223344566666677788888999999999999999999999999999
Q ss_pred ccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 863 PMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRE 942 (1343)
Q Consensus 863 p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~ 942 (1343)
|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.+++++++++.+++..++.+..++
T Consensus 101 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~ 180 (571)
T TIGR02203 101 PVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180 (571)
T ss_pred CHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000702 943 LVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMV-LL 1021 (1343)
Q Consensus 943 l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~-~~ 1021 (1343)
..+......+...+.+.|+++|+.+||+++.++++.+++.+..+...+..........+......++..+...++.+ ..
T Consensus 181 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (571)
T TIGR02203 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIAL 260 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999888877777777777766666655433332222 22
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEE
Q 000702 1022 VSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELID 1101 (1343)
Q Consensus 1022 ~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~n 1101 (1343)
.....|.+++|.+..+++++..+..++..+...+..+.....+.+|+.++.+.+++.+.. ..+.. +..+.|+|+|
T Consensus 261 ~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~ 335 (571)
T TIGR02203 261 FQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRN 335 (571)
T ss_pred HHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEE
Confidence 334578899999999999999999999999999999999999999999999866553311 11111 2456899999
Q ss_pred EEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCc
Q 000702 1102 LKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181 (1343)
Q Consensus 1102 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp 1181 (1343)
|+|+|++..+++|+|+||+|+|||+|+|+|+||||||||+++|.|+++|++|+|++||+|+++++.+++|++++||||||
T Consensus 336 v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 415 (571)
T TIGR02203 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415 (571)
T ss_pred EEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCc
Confidence 99999875567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhcCCCC--CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeC
Q 000702 1182 NLFEGTIRCNLDPLE--EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259 (1343)
Q Consensus 1182 ~lF~gTIr~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDE 1259 (1343)
++|+||||+||..++ +.+|++++++++.+++++++.++|+||||+++|+|.+||||||||||||||++++|+||||||
T Consensus 416 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE 495 (571)
T TIGR02203 416 VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE 495 (571)
T ss_pred ccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999774 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhc
Q 000702 1260 ATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1260 aTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~ 1334 (1343)
|||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+++ ++.|+++++++.
T Consensus 496 pts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 496 ATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQF 569 (571)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999999899999999999999999999999999999999999999975 689999988653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-76 Score=672.52 Aligned_cols=499 Identities=20% Similarity=0.278 Sum_probs=434.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHH
Q 000702 826 AFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLV 905 (1343)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~ 905 (1343)
++...+.-++..++.+...++.-..+|.++++++...+..-......|+++||+..|++.+|+.+-..+..++..++...
T Consensus 68 aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~ 147 (573)
T COG4987 68 AILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147 (573)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHH
Confidence 33444455555666777888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHH
Q 000702 906 GIIGVMTMVTWQVLLLVI-PMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYL 984 (1343)
Q Consensus 906 ~~~~~~~~~~~~~~~~~i-p~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~ 984 (1343)
+..+.+.+++|++.+.+. .++++.+.+...+.+..|...+.-...+..+.++|.|.+.|....+.||++++|.+.+...
T Consensus 148 ~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~ 227 (573)
T COG4987 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227 (573)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH
Confidence 888888888988876554 4455556677777788888888888899999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 000702 985 LDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCM-VLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWI-LSFCKLENKI 1062 (1343)
Q Consensus 985 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~-~~~~~~e~~~ 1062 (1343)
.+...+..........|....+.++.++.+.... .+......|..+...+.+++..++.....+.-+. ..+.++....
T Consensus 228 e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~ 307 (573)
T COG4987 228 EASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVI 307 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHH
Confidence 9999999999999999999999888887666333 3333345666554344444444444445555555 5567888888
Q ss_pred hhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCc-eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHH
Q 000702 1063 ISIERIYQYSQIPGEAPPVIEDSRPPSSWPENG-TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLI 1141 (1343)
Q Consensus 1063 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g-~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl 1141 (1343)
-|..|+.+..+.++|..... .. -|..+ .++++||+|+|+++.++||+|+||++++||||||+||||||||||+
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~~--~~----~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTll 381 (573)
T COG4987 308 ASARRLNDILDQKPEVTFPD--EQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381 (573)
T ss_pred HHHHHHhhhccCCcccCCCc--cc----cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHH
Confidence 99999999987766654321 11 11222 7999999999999888999999999999999999999999999999
Q ss_pred HHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhccc
Q 000702 1142 QALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKD 1220 (1343)
Q Consensus 1142 ~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp 1220 (1343)
++|.|.++|++|+|+.+|.|++.++.+++|+.|++++|.+++|+||+|+||... .+.||||+|++|++++|++++.+.|
T Consensus 382 qLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p 461 (573)
T COG4987 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAP 461 (573)
T ss_pred HHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999854 4689999999999999999999999
Q ss_pred CCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCE
Q 000702 1221 QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDL 1300 (1343)
Q Consensus 1221 ~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~Dr 1300 (1343)
+||+|.+||+|.+|||||||||+|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..|||
T Consensus 462 ~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~dr 541 (573)
T COG4987 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541 (573)
T ss_pred hhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEeeecChhHHhhcCCcHHHHHHH
Q 000702 1301 VLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1301 Ilvl~~G~ive~g~p~eLl~~~~~~f~~l~~ 1331 (1343)
|+|||+|+++|.|+|++|++ ++|.|++|.+
T Consensus 542 Iivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 542 IIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred EEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 99999999999999999998 5899999975
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=730.33 Aligned_cols=547 Identities=22% Similarity=0.267 Sum_probs=437.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 123 PSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDI 202 (1343)
Q Consensus 123 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (1343)
...++.+.+.+++.+++..++.++..++..+.|++++.++|.+..++......+.++++++++.++..++.....+...+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999764211111122333444555556666666666667788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 203 LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVAT 281 (1343)
Q Consensus 203 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~ 281 (1343)
.+.++...++..+|+|+++++...+++.++|++++++++|++++.+++. .+..++...+.+++++++++...+..+++.
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 169 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754 566666666666666555554444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000702 282 LIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEE----MRGVEFRWLRKALYS 357 (1343)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~----~r~~e~~~~~~~~~~ 357 (1343)
++++++.+.+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+ .++.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566677888888999999999999999999999999999999999987777644 444444433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 358 QAFITFIFWSSPIFVAAVTFGTSILLGAQLTAG---------SVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISG 428 (1343)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~---------~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~ 428 (1343)
..+..++.. .+.+ .++.++.+.+. +.+|.| .+++++.+...+..|+..++..+..+.+++++.+|+.+
T Consensus 250 ~~~~~~~~~-~~~~-~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFAS-ISIA-LVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHH-HHHH-HHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 1111 22233333333 444444 44566677788899999999999999999999999999
Q ss_pred hhcccccccccccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCC
Q 000702 429 FLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508 (1343)
Q Consensus 429 fl~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~ 508 (1343)
+++.++.++..............|+++|++|.|++ ++++|+|+||+|+||+++||||+||||||||+++|+|++ |++
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99876533211110001112236999999987764 368999999999999999999999999999999999999 899
Q ss_pred cEEEECC-------------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCC
Q 000702 509 GEVRLCG-------------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574 (1343)
Q Consensus 509 G~i~~~g-------------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 574 (1343)
|+|.++| .++||||+||+|++||||||++|++ .++++++++++.|+++++++.+|+|++|.+||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999998 4899999999999999999999965 8999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEE
Q 000702 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRII 654 (1343)
Q Consensus 575 ~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~ 654 (1343)
.+|||||||||+||||++++|+||||||||||||+++++++.+ .+....+++|+|+||||++.+..||+|++|++|+++
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999876 566667899999999999999999999999999999
Q ss_pred EecChHHHHhcCccHHHHHHHH
Q 000702 655 QAGKYDDLLQAGTDFNALVSAH 676 (1343)
Q Consensus 655 ~~g~~~~l~~~~~~~~~~~~~~ 676 (1343)
++|+|+|++++++.|.+++..+
T Consensus 563 e~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 563 QQGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred ecCCHHHHHhcchHHHHHHHHh
Confidence 9999999999888888877543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-75 Score=746.64 Aligned_cols=564 Identities=23% Similarity=0.281 Sum_probs=465.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 762 MKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVA 841 (1343)
Q Consensus 762 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~ 841 (1343)
++.++.+++...+. +..++++.++..++.++.++.+....|.............+..+++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444454433222 2233334455555666677777655543211111112223344455555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 842 TFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLL 921 (1343)
Q Consensus 842 ~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1343)
..+.+....++.++++++++.|+.||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|++.++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 69999999888877777777776777788888999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000702 922 VIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEW 1001 (1343)
Q Consensus 922 ~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1001 (1343)
++..++++..+..+..+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..+...+..+.......+
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555555555555555566778889999999999999999999999999999988888777776666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCC
Q 000702 1002 LCLRMELLSTFVFAFCMV-LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPP 1080 (1343)
Q Consensus 1002 l~~~l~~~~~~~~~~~~~-~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1080 (1343)
......++..+...++.+ .......|.++.|.+..+.+++..+..++..+...+..++....+.+|+.++.+.|+|.+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 666665555433332222 2233457889999999999999999999999999999999999999999999987766432
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCe
Q 000702 1081 VIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI 1160 (1343)
Q Consensus 1081 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~ 1160 (1343)
. . ........|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||+
T Consensus 444 ~---~-~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 444 A---G-LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred C---C-CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1 01111235789999999999876667999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1161 DISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1161 di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
|+++++.+++|++|++|||||.+|+|||||||... ++.+++++++|++.+++++++.++|+||||.++|+|.+||||||
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 99999999999999999999999999999999875 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHh
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHh
Q 000702 1320 EDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1320 ~~~~~~f~~l~~~~ 1333 (1343)
++ +|.|++|++.+
T Consensus 680 ~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 680 AL-QGLYARLWQQQ 692 (694)
T ss_pred Hc-CChHHHHHHhh
Confidence 85 69999999854
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-74 Score=716.46 Aligned_cols=506 Identities=21% Similarity=0.262 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 782 ILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLV--VYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSV 859 (1343)
Q Consensus 782 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~v 859 (1343)
+++.++..++.++.++.+++..+...... . ....+.. .++++.++..++.+++.++....+.+...+++.++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 96 (529)
T TIGR02868 19 ILLGALALGSAVALLGVSAWLISRAAEMP-P-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRL 96 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555666666666666554221111 1 1111111 112234445666777888888889999999999999999
Q ss_pred hccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000702 860 FRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLW-MQKYYMA 938 (1343)
Q Consensus 860 l~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~-~~~~~~~ 938 (1343)
++.|..||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++++..++++.+ ...++.+
T Consensus 97 l~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 176 (529)
T TIGR02868 97 ARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLR 176 (529)
T ss_pred hccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988776655444433 3344445
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 939 SSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCM 1018 (1343)
Q Consensus 939 ~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1018 (1343)
..++..+......+.+.+++.|+++|+++||+|+.++.+.+++.+..+...+..........+......++..+...++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (529)
T TIGR02868 177 AARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGAL 256 (529)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667778899999999999999999999999999999888877776665554444444444443333222222
Q ss_pred H-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceE
Q 000702 1019 V-LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTI 1097 (1343)
Q Consensus 1019 ~-~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I 1097 (1343)
. .......|.++.|.+..++.++..+..++..+...+..+.....+.+|+.++.+.++|.+.. +...+...+|..+.|
T Consensus 257 ~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I 335 (529)
T TIGR02868 257 WAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTL 335 (529)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceE
Confidence 1 12234578899999999999999999999999999999999999999999999876553221 111111123456789
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|++++ .+++|++|+||
T Consensus 336 ~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V 413 (529)
T TIGR02868 336 ELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVF 413 (529)
T ss_pred EEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEE
Confidence 9999999997643 599999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000702 1178 PQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256 (1343)
Q Consensus 1178 pQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILl 1256 (1343)
||||++|+|||||||.++ ++.+|+++++|++.+++++++.++|+||||+|||+|.+||||||||||||||++++|+|||
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999986 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q 000702 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292 (1343)
Q Consensus 1257 LDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl 1292 (1343)
||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-73 Score=717.45 Aligned_cols=546 Identities=21% Similarity=0.285 Sum_probs=449.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 779 PLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRS 858 (1343)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 858 (1343)
.+++++.++..++.+..++++.+..+.... ......++..++++.++..+..++...+......+....+..+++++
T Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 98 (588)
T PRK13657 22 ILLAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFER 98 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777778887765553221 11122223333333333333344444444455555556667799999
Q ss_pred HhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 859 VFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMA 938 (1343)
Q Consensus 859 vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 938 (1343)
+++.|..+|++.+.|++++|+++|++.+...+...+..++..++.+++.++++++.+|++.++++.++++++++..++.+
T Consensus 99 l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 178 (588)
T PRK13657 99 IIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMR 178 (588)
T ss_pred HHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777777887877788888888899999888777777777777788888
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000702 939 SSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFC- 1017 (1343)
Q Consensus 939 ~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~- 1017 (1343)
..++..+......+...+++.|+++|+.+||+|+.++.+.+++....+...+..........+.....+++..+...++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
T PRK13657 179 KTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAIL 258 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888999999999999999999999999999999888888777666555555555444444333222222
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCC-CCCce
Q 000702 1018 MVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSW-PENGT 1096 (1343)
Q Consensus 1018 ~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~w-p~~g~ 1096 (1343)
++.......|.+++|.+..++.++..+..++..+...+..+.....+.+|+.++.+.+++.+.. . ... .+ +..+.
T Consensus 259 ~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~-~~~--~~~~~~~~ 334 (588)
T PRK13657 259 VLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-P-GAI--DLGRVKGA 334 (588)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-C-CCC--CcCCCCCe
Confidence 2223334578899999999999999999999999999999999999999999988754432211 0 100 11 23467
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+|+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+|
T Consensus 335 I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 335 VEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 9999999999753 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
|||||.+|+||||+||..+ ++.+|++++++++++++++++.++|+|+||.++|+|.+|||||||||||||||+++|+||
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999876 467899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
|||||||+||++|++.|.+.|++..+++|+|+||||++++..||||++|++|+++|.|+|++|+++ ++.|++|+++.
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQ 570 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHh
Confidence 999999999999999999999988889999999999999999999999999999999999999975 69999999755
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=717.38 Aligned_cols=548 Identities=22% Similarity=0.292 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000702 783 LAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRA 862 (1343)
Q Consensus 783 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~ 862 (1343)
++.++..++.+..++.+....+.............++.+++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 104 (576)
T TIGR02204 25 VALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISL 104 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555666666666544432110111111222333444444555666777888888899999999999999999999
Q ss_pred ccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 863 PMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRE 942 (1343)
Q Consensus 863 p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~ 942 (1343)
|.++|+..+.|++++|+++|++.++..+...+..++..++.+++.+++++.++|++.++++..+++.+++..++.+..+.
T Consensus 105 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~ 184 (576)
T TIGR02204 105 SPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRK 184 (576)
T ss_pred CHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888898999999999999999999998777666555555566666677777
Q ss_pred HHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000702 943 LVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCM-VLL 1021 (1343)
Q Consensus 943 l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~~ 1021 (1343)
..+..........+++.|+++|+++||+|+.++.+.+++.+..+...+..........|+......+..+...+.. +..
T Consensus 185 ~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (576)
T TIGR02204 185 LSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGA 264 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888899999999999999999999999999999888877776665555555555544443332222211 122
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEE
Q 000702 1022 VSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELID 1101 (1343)
Q Consensus 1022 ~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~n 1101 (1343)
.....|.+++|.+..+..++..+..++..+...+.++.....+.+|+.++.+.++|.+... ...+..+|..+.|+|+|
T Consensus 265 ~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~ 342 (576)
T TIGR02204 265 HDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQ 342 (576)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEE
Confidence 2345788999999999999999999999999999999999999999999987665422111 11112234457899999
Q ss_pred EEEEEcCCC-CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCC
Q 000702 1102 LKVRYGENL-PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQD 1180 (1343)
Q Consensus 1102 vs~~Y~~~~-~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQd 1180 (1343)
|+|+|+++. +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|+|+|||
T Consensus 343 v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~ 422 (576)
T TIGR02204 343 VNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQD 422 (576)
T ss_pred EEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccC
Confidence 999997543 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeC
Q 000702 1181 PNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259 (1343)
Q Consensus 1181 p~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDE 1259 (1343)
|++|+||||+||.+++ +.+|++++++++++++.+++.++|+|+||+++|+|.+||||||||++||||++++|+||||||
T Consensus 423 ~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE 502 (576)
T TIGR02204 423 PVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE 502 (576)
T ss_pred CccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 9999999999999754 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1260 ATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1260 aTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
|||+||.+|++.|.+.|++..+++|+|+||||++.+..||||++|++|+++|.|+|++|++ +++.|++|++.+
T Consensus 503 pts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~-~~~~~~~l~~~~ 575 (576)
T TIGR02204 503 ATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA-KGGLYARLARLQ 575 (576)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH-cCChHHHHHhhc
Confidence 9999999999999999999888999999999999999999999999999999999999997 578999998753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-74 Score=657.33 Aligned_cols=513 Identities=25% Similarity=0.342 Sum_probs=407.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhH
Q 000702 815 PMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 894 (1343)
Q Consensus 815 ~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~ 894 (1343)
....+..|.+..+++.+|..++.+++.....++-+....+.++..++..++||....+|.+.+...+-...+...+...+
T Consensus 73 ~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V 152 (591)
T KOG0057|consen 73 ITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMV 152 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999988888777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCc
Q 000702 895 GGFASTTIQLVGIIGVMT-MVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQ 973 (1343)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~ 973 (1343)
..++..++.+......+. -..+.+.++.+..+..|..+..+..+.--+.++....+........-+++.+-++||+||.
T Consensus 153 ~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 153 FNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 555555554433332222 2233333333322222221111111111122233333444455667799999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000702 974 EKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL-LVSFPHGAIDPSMAGLAVTYGLNLNARLSRWI 1052 (1343)
Q Consensus 974 ~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~ 1052 (1343)
|++..+++...+....++..........+.+--..+..+....+.++ +-....+.++.+.+.+..++..++..++..+-
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHH
Confidence 99999999998888877665555544444444444333322222222 12234567788888888888999999999998
Q ss_pred HHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcC
Q 000702 1053 LSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGR 1132 (1343)
Q Consensus 1053 ~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGr 1132 (1343)
..+.++-+.+.-.+-+....+.. .. ..+. +++.-...|.|+|+||+|.|+|+ ++||+|+||+|++||||||||+
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~~--~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~ 386 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEVD--ED--IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGS 386 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhh--hh--hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECC
Confidence 88888887776665544332211 10 0111 11222345779999999999976 4599999999999999999999
Q ss_pred CCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcC
Q 000702 1133 TGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQ 1211 (1343)
Q Consensus 1133 TGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~ 1211 (1343)
|||||||++++|+||++ ++|+|+|||+||++++++.+|+.||+||||..||++||-+||.+++ ..+|||+.+++++++
T Consensus 387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG 465 (591)
T ss_pred CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence 99999999999999999 9999999999999999999999999999999999999999998765 689999999999999
Q ss_pred CchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q 000702 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291 (1343)
Q Consensus 1212 L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHr 1291 (1343)
++|.+.++|+||+|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|+....++|+|+|+||
T Consensus 466 ~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~ 545 (591)
T KOG0057|consen 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545 (591)
T ss_pred cHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred cccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhcc
Q 000702 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335 (1343)
Q Consensus 1292 l~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~~ 1335 (1343)
++++++||+|+|||+|+|.|+|+|+||++ +.+.|+++|.....
T Consensus 546 l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred chhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 99999999999999999999999999998 78899999876543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=708.33 Aligned_cols=511 Identities=21% Similarity=0.219 Sum_probs=431.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHH
Q 000702 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGF 897 (1343)
Q Consensus 818 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~ 897 (1343)
++.+++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+...+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444555566667777778888999999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHH
Q 000702 898 ASTTIQLVGIIGVM-TMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKR 976 (1343)
Q Consensus 898 ~~~~~~~~~~~~~~-~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~ 976 (1343)
+..++..++.++++ ++++|++.++++..+++.+++.+.+.+..++..+......+.+.+.+.|+++|+++||+|+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 77766655555555 47888887776666666666666666666666677777788899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 977 FMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAF-CMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSF 1055 (1343)
Q Consensus 977 ~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~ 1055 (1343)
+.+++.+..+...+..+.......+..........+...+ ..+.......|.++.|.+..+..|...+..++..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888776666554444444333333222221111 111122345788999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCC
Q 000702 1056 CKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGS 1135 (1343)
Q Consensus 1056 ~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGs 1135 (1343)
..+.....+.+|+.++.+.+++.+.. ....+ +..+.|+|+||+|+|+++..++|+|+||+|+|||++||||+|||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCC
Confidence 99999999999999999766443211 01111 23568999999999986556799999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCch
Q 000702 1136 GKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGD 1214 (1343)
Q Consensus 1136 GKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~ 1214 (1343)
|||||+++|.|+++|++|+|++||+|+++++.+++|+++++|||+|++|+||||+||..+ .+.+|++++++++.+++++
T Consensus 353 GKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~ 432 (569)
T PRK10789 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD 432 (569)
T ss_pred CHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999876 4689999999999999999
Q ss_pred HHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCccc
Q 000702 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPT 1294 (1343)
Q Consensus 1215 ~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1294 (1343)
++.++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 433 ~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 433 DILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred ccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhc
Q 000702 1295 VIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1295 i~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~ 1334 (1343)
+..||+|++|++|+++|.|+|++|+++ ++.|++|++.+.
T Consensus 513 ~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 513 LTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred HHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 999999999999999999999999975 689999997653
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-72 Score=703.01 Aligned_cols=550 Identities=21% Similarity=0.285 Sum_probs=446.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000702 781 IILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVF 860 (1343)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl 860 (1343)
.+++.++..++.++.++.+++..+..... . ....++..++++.++..+..++...+....+.+...+++.+++++++
T Consensus 24 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~ 100 (585)
T TIGR01192 24 IVIANITLAAITIAEPILFGRIIDAISSK-S--DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRII 100 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666777666555432111 1 11122222222333333334444444445555566667779999999
Q ss_pred ccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 861 RAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASS 940 (1343)
Q Consensus 861 ~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 940 (1343)
+.|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+.++++.++++++++...+.+..
T Consensus 101 ~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~ 180 (585)
T TIGR01192 101 SMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRT 180 (585)
T ss_pred cCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888888899999998887777777777778888888
Q ss_pred HHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000702 941 RELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFC-MV 1019 (1343)
Q Consensus 941 r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-~~ 1019 (1343)
++..+......+...+++.|+++|++|||+|+.++.+.+++.+..+...+..+.......+......++..+...++ .+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 260 (585)
T TIGR01192 181 KNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVI 260 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999988888777666554443333333333333322222111 11
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCC-CCceEE
Q 000702 1020 LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWP-ENGTIE 1098 (1343)
Q Consensus 1020 ~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp-~~g~I~ 1098 (1343)
.......|.++.|.+..++.|+..+..++..+...+.++.....+.+|+.+..+.+++.+.. ..+ ..++ ..+.|+
T Consensus 261 g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~-~~~~~~~~~i~ 336 (585)
T TIGR01192 261 GTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADA-PELPNVKGAVE 336 (585)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccC-CCCCCCCCeEE
Confidence 22234578899999999999999999999999999999999999999999998765432211 111 1122 356799
Q ss_pred EEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeec
Q 000702 1099 LIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIP 1178 (1343)
Q Consensus 1099 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVp 1178 (1343)
|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+.+|+++++||
T Consensus 337 ~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 99999999754 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 000702 1179 QDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257 (1343)
Q Consensus 1179 Qdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlL 1257 (1343)
|||.+|++|+|+||..+ ++.+|++++++++.+++++++.++|+|+||.++|+|.+||||||||++|||||+++|+||||
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999876 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhcccC
Q 000702 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSSRS 1337 (1343)
Q Consensus 1258 DEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~~~~ 1337 (1343)
|||||+||.+|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|++|++.+....
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~~~ 574 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRRSGLLT 574 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHhCcccc
Confidence 9999999999999999999988889999999999999999999999999999999999999974 689999998875444
Q ss_pred CC
Q 000702 1338 SG 1339 (1343)
Q Consensus 1338 ~~ 1339 (1343)
+|
T Consensus 575 ~~ 576 (585)
T TIGR01192 575 NQ 576 (585)
T ss_pred CC
Confidence 43
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-71 Score=707.80 Aligned_cols=542 Identities=22% Similarity=0.263 Sum_probs=445.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 124 SLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDIL 203 (1343)
Q Consensus 124 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (1343)
.+++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454477888899999999999999999999999999997753221 12233344445555555666666666677889
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 204 GMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHD-IWMLPLQIILALAILYKNVGIASVAT 281 (1343)
Q Consensus 204 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~-~~~~~~~i~~~~~~l~~~~g~~~l~~ 281 (1343)
+.++...++..+|+|+++++..++++.++|+++++++ |++.+.+++. .+.. +...++ +++++++++...++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 8999987653 2223 333333 3445555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 282 LIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFI 361 (1343)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 361 (1343)
++++++.+++..++.++.++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888888999999999999999999999999999999999999888887776555444433333333222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 000702 362 TFIFWS--SPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDA 439 (1343)
Q Consensus 362 ~~~~~~--~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~ 439 (1343)
..+... ....+.++++|++.+..+.+|.|.++++.+++..+..|+..++..+..+++++++++|+.++++.+++.+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 222111 122334566788888899999999999999999999999999999999999999999999999876543221
Q ss_pred ccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----
Q 000702 440 TIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---- 515 (1343)
Q Consensus 440 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 515 (1343)
.. ........|+++|++|+|++ .++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 ~~--~~~~~~~~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 442 KT--DPGKLSGAIEVDRVTFRYRP-DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred cC--CCCCCCceEEEEEEEEEcCC-CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 11 11112346999999999864 346899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 ---------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 ---------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++||||+|++|++||+|||.+|++.+++++.++++.|+++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 48999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
||||++++|+++|||||||+||+++++++.+.+ +.. ++|+|+||||++.++.||+|++|++|+++++|+|+|+++.+
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999988764 433 68999999999999999999999999999999999999988
Q ss_pred ccHHHHHH
Q 000702 667 TDFNALVS 674 (1343)
Q Consensus 667 ~~~~~~~~ 674 (1343)
+.|.++++
T Consensus 676 ~~y~~l~~ 683 (686)
T TIGR03797 676 GLFAQLAR 683 (686)
T ss_pred cHHHHHHH
Confidence 88888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-72 Score=696.95 Aligned_cols=518 Identities=21% Similarity=0.282 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000702 782 ILAQVLFQFLQIASNWWMAWANPQTE-GDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVF 860 (1343)
Q Consensus 782 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl 860 (1343)
+++.++..++.++.++.+++..+... ..........+.+.++++.++..++.+++.++....+.+...+++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666776666554321 11111112334455556666677888889999999999999999999999999
Q ss_pred ccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 861 RAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASS 940 (1343)
Q Consensus 861 ~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 940 (1343)
+.|..+|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..+++..++..++.+..
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 168 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAA 168 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888888888999999877666555444444444455555
Q ss_pred HHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000702 941 RELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCM-V 1019 (1343)
Q Consensus 941 r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~ 1019 (1343)
+...+......+...+++.|+++|+++||+|+.|+++.+++.+..+...+..........+......++..+...++. +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02857 169 QAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVY 248 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666677788999999999999999999999999999888887776666555555655555554443332221 1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEE
Q 000702 1020 LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIEL 1099 (1343)
Q Consensus 1020 ~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f 1099 (1343)
.......|.++.|.+..++.|+..+..++..+...+..+.....+.+|+.++.+.+++... . .+...+..+.|+|
T Consensus 249 ~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~--~~~~~~~~~~i~~ 323 (529)
T TIGR02857 249 IGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---K--APVTAAPAPSLEF 323 (529)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---C--cCCCCCCCCeEEE
Confidence 1222237889999988899999999999999999999999999999999999975433221 1 1111223468999
Q ss_pred EEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecC
Q 000702 1100 IDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ 1179 (1343)
Q Consensus 1100 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQ 1179 (1343)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++++|||
T Consensus 324 ~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 324 SGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 99999998665579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 000702 1180 DPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258 (1343)
Q Consensus 1180 dp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLD 1258 (1343)
||.+|+|||||||..+ ++.+|++++++++.+++++++.++|+||||+++|+|.+||||||||++||||++++|+|||||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999875 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEE
Q 000702 1259 EATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVL 1304 (1343)
Q Consensus 1259 EaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl 1304 (1343)
||||+||++|++.|++.|++..+++|+|+||||++++..||||+||
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=709.70 Aligned_cols=544 Identities=18% Similarity=0.235 Sum_probs=452.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 124 SLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDIL 203 (1343)
Q Consensus 124 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (1343)
..++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888899999999999999999999997653321 11233344445555566666666666777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 204 GMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATL 282 (1343)
Q Consensus 204 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~ 282 (1343)
+.++...++..+|+|+++++..++++.++|+++++++.| +.+.+++. .+..++...+.+++.+++++...++.+++.+
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 300 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 67877653 4445555555566666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 283 IATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFIT 362 (1343)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 362 (1343)
+.+++.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++.+.++.+...+.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888999999999999999999999999999999999999999998887776665544443333322
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 000702 363 FIFW--SSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT 440 (1343)
Q Consensus 363 ~~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~ 440 (1343)
.+.. .....+.++++|++.+..+.+|+|.++++..++..+..|+..++..+..++++.++++|+.++++.+++.+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 2211 11223445678888888999999999999999999999999999999999999999999999998765432211
Q ss_pred ------cccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEEC
Q 000702 441 ------IVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLC 514 (1343)
Q Consensus 441 ------~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 514 (1343)
...+.....+.|+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCC-CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 00010112346999999999864 34689999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChH
Q 000702 515 G-------------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGG 580 (1343)
Q Consensus 515 g-------------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgG 580 (1343)
| .++||||+|++|++||||||.++.+ .+++++.++++.+++++++..+|+|++|.+||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 8 4899999999999999999998864 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChH
Q 000702 581 QKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 581 QkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||||+||||++++|+|+|||||||+||+++++++++.+.. .++|+|+||||++.+..||+|++|++|++++.|+|+
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999876533 589999999999999999999999999999999999
Q ss_pred HHHhcCccHHHHH
Q 000702 661 DLLQAGTDFNALV 673 (1343)
Q Consensus 661 ~l~~~~~~~~~~~ 673 (1343)
|+++.++.|.+++
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9998888887764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-73 Score=630.93 Aligned_cols=489 Identities=23% Similarity=0.359 Sum_probs=415.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHH-HHHHHHH
Q 000702 838 VLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIG-VMTMVTW 916 (1343)
Q Consensus 838 ~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ 916 (1343)
.++...+..+-+.+--+.+.++.+..+.|+-+..+|-+..-...-..-|+..+...+...+..++.+...++ +....+|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 445566777788888889999999999999888777554444444444444455555666666665544433 3445678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHH
Q 000702 917 QVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSL 996 (1343)
Q Consensus 917 ~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~ 996 (1343)
++..+.+..+++|.++......-.-..+|....+.+...+.-.++|-..+|++.|+.|+.+..++...++.+.++....+
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 88877777776666654444444445566666677777788889999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Q 000702 997 AAIEWLCLRMELLSTFVFAFCMVL-LVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIP 1075 (1343)
Q Consensus 997 ~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~ 1075 (1343)
.+..|+++--..+..........+ ...+..|.++.|.+.+...+..++..+++.+...+.++.+.....|+..+..+.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 888888777666555433333222 2335578899999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCCC-CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcce
Q 000702 1076 GEAPPVIEDSRPPSSWP-ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154 (1343)
Q Consensus 1076 ~e~~~~~~~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~ 1154 (1343)
.|.. +....|+-|| ..|.|.|+||+|.|.+.. ++|+|+||++++|+++||||++|+||||+.++|+|||++++|+
T Consensus 244 ~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 244 AEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred hhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 5532 2233455675 458899999999999875 5999999999999999999999999999999999999999999
Q ss_pred EEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCC
Q 000702 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1155 I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1233 (1343)
|.|||+||+++..+.||+.||+||||.+||++|+..|+.+. .+.+++|++.|++.++++++|+++|+||||+|||.|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999876 46899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeec
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1234 LSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g 1313 (1343)
||||||||+++||++|++|+||+||||||+||..||+.||.+|++.++++|.++|||||+||.++|.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCCcHHHHHHH
Q 000702 1314 TPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1314 ~p~eLl~~~~~~f~~l~~ 1331 (1343)
+|+||+++ +|.|++||.
T Consensus 480 ~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA-GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc-CChHHHHhc
Confidence 99999986 899999985
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=702.79 Aligned_cols=542 Identities=21% Similarity=0.272 Sum_probs=435.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
++.+++.+++.++...++.++..++.++.|++++.++|.+....+.. .....++.+++..++..++.....+...+.+.
T Consensus 152 l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (711)
T TIGR00958 152 LLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPP-ALASAIFFMCLLSIASSVSAGLRGGSFNYTMA 230 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888889999999999999999999999886432211 11111222222333333443333334456777
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 206 ~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~ 284 (1343)
++...++..+|+|+++.+..++++.++|+++|++++|++.+.+.+. .+..++...+.+++++++++...+..+++.++.
T Consensus 231 ~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~ 310 (711)
T TIGR00958 231 RINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310 (711)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999987654 556666666677766666665555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 285 TIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFI 364 (1343)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 364 (1343)
+++.+.+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++..++..+..++...........
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWT 390 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677888888888888999999999999999999999999999999877666655443333222222221211111
Q ss_pred H--HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 000702 365 F--WSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIV 442 (1343)
Q Consensus 365 ~--~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~ 442 (1343)
. ......+.++.++.+.+..+.+|+|.+++++.+...+..|+..++..+..++++.++.+|+.++++.++..+.....
T Consensus 391 ~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 470 (711)
T TIGR00958 391 TSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 1 11112334566788888899999999999999999999999999999999999999999999999876543221111
Q ss_pred cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------
Q 000702 443 LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------- 515 (1343)
Q Consensus 443 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 515 (1343)
.+ ......|+++|++|+|++.+++++|+|+||+|+|||+++||||||||||||+++|+|+++|++|+|.+||
T Consensus 471 ~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 549 (711)
T TIGR00958 471 AP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549 (711)
T ss_pred CC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 11 1123469999999999754456899999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
.++||+|+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 550 ~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 4899999999999999999999965 678899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCcc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 668 (1343)
||++++|+|+|||||||+||+++++.+.+ ....+++|+|+||||++.+..||+|++|++|+|+++|+|+|++++++.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~ 706 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCc
Confidence 99999999999999999999999888876 223478999999999999999999999999999999999999988776
Q ss_pred HHHH
Q 000702 669 FNAL 672 (1343)
Q Consensus 669 ~~~~ 672 (1343)
|.++
T Consensus 707 y~~l 710 (711)
T TIGR00958 707 YKHL 710 (711)
T ss_pred hHhc
Confidence 6653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-70 Score=702.40 Aligned_cols=537 Identities=25% Similarity=0.331 Sum_probs=444.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 123 PSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDI 202 (1343)
Q Consensus 123 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (1343)
...++.+++.+++.+....++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788899999999999999999999999999999997653221 1123334444444455566666666666788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 203 LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YL-HDIWMLPLQIILALAILYKNVGIASVA 280 (1343)
Q Consensus 203 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~-~~~~~~~~~i~~~~~~l~~~~g~~~l~ 280 (1343)
++.++...++..+|+|+++++..+ .+.++|++++++ +|++.+.+++. .+ ..+...++ +++.+++++...++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999987 678999999999 79999998654 22 23333333 444444555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 281 TLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF 360 (1343)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 360 (1343)
.++++++++++..++.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999998888777665554444444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 000702 361 ITFIFWSS--PIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQED 438 (1343)
Q Consensus 361 ~~~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~ 438 (1343)
...+.... ...+.++++|++.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 22222111 1233456778888889999999999999999999999999999999999999999999999987654322
Q ss_pred cccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---
Q 000702 439 ATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--- 515 (1343)
Q Consensus 439 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 515 (1343)
.....+.....+.|+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1111111112346999999999953 346899999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 ----------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 ----------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++||+|+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+|.+||||||||
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 4899999999999999999999987 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
++||||++++|+++|||||||+||+++++++.+. +....+++|+|+||||++.+..||+|++|++|+++++|+|+|+++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999988765 566667999999999999999999999999999999999999975
Q ss_pred c
Q 000702 665 A 665 (1343)
Q Consensus 665 ~ 665 (1343)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 3
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=697.59 Aligned_cols=541 Identities=22% Similarity=0.292 Sum_probs=439.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 125 LALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILG 204 (1343)
Q Consensus 125 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (1343)
.++.+++.+++.++...++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (708)
T TIGR01193 146 KFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLG 224 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888999999999999999999997653221 112233334444445555666655566677889
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 205 MHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLI 283 (1343)
Q Consensus 205 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~ 283 (1343)
.++...++..+|+|+++++..++++.++|+++++++ |++.+.+++. .........+.+++++++++...++.+++.++
T Consensus 225 ~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 303 (708)
T TIGR01193 225 QRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999987653 23333333333334444444444445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 000702 284 ATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQ----A 359 (1343)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~----~ 359 (1343)
++++++.+...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..... .
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777888889999999999999999999999999999999999999888887766554443333222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 000702 360 FITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDA 439 (1343)
Q Consensus 360 ~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~ 439 (1343)
+..++.. ...+.++++|++.+..+.+|+|.++++..++..+..|+..+...+..+++++++++|+.++++.+++.+..
T Consensus 384 ~~~~~~~--~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 384 IKAVTKL--ILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 2222211 22344567889999999999999999999999999999999999999999999999999999876543221
Q ss_pred ccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----
Q 000702 440 TIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---- 515 (1343)
Q Consensus 440 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 515 (1343)
....+.....+.|+++|++|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 462 ~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 462 KKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 110111122346999999999853 46899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEcccccccCccHHHHhccCC--CCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 ---------TAAYVSQSAWIQSGNIEENILFGS--PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 ---------~i~~v~Q~~~l~~~ti~~Ni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++||||+|++|++||+|||.+|. ..+++++.++++.++++++++.+|+|++|.+||+|.+||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 489999999999999999999983 477889999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|+||||++++|+++|||||||+||+++++++.+.+. . .+++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-N-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-H-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999998877654 4 37899999999999999999999999999999999999998
Q ss_pred cCccHHHHH
Q 000702 665 AGTDFNALV 673 (1343)
Q Consensus 665 ~~~~~~~~~ 673 (1343)
.++.|.+++
T Consensus 698 ~~~~y~~l~ 706 (708)
T TIGR01193 698 RNGFYASLI 706 (708)
T ss_pred cCCcHHHHh
Confidence 888887765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=676.02 Aligned_cols=546 Identities=18% Similarity=0.228 Sum_probs=440.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 125 LALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILG 204 (1343)
Q Consensus 125 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (1343)
.++.+++.+++.++...++.++..++..+.|++++.+++.+..... ......+++++++..++..++.....+...+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RSVLKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888888888888888888999999999987654221 111112222233344444455555445567788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 205 MHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLI 283 (1343)
Q Consensus 205 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~ 283 (1343)
.++...++..+|+|.++++...+.+.+.|++++++++|++.+.+.+. .+..++..++.+++++++++...++.+++.++
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 173 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV 173 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987543 45556666666777766666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 284 ATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITF 363 (1343)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 363 (1343)
++++.+++...+.++.++..++.++..++..+...|.++|+++||.++.|+.+.+++++..+.-.+...+..........
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T PRK11176 174 IAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDP 253 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666778888888889999999999999999999999999999999888777776554433333332222222111
Q ss_pred HHH--HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 000702 364 IFW--SSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATI 441 (1343)
Q Consensus 364 ~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~ 441 (1343)
+.. .....+.++.++.+.+..+.+|+|.+.++.+++..+..|+..+...+..+.+++.+++|+.++++.++..+....
T Consensus 254 ~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 333 (582)
T PRK11176 254 IIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc
Confidence 111 112233445677777788999999999999999999999999999999999999999999999987654321111
Q ss_pred ccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------
Q 000702 442 VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------ 515 (1343)
Q Consensus 442 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 515 (1343)
. .......|+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 334 ~--~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~ 410 (582)
T PRK11176 334 V--IERAKGDIEFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY 410 (582)
T ss_pred C--CCCCCCeEEEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc
Confidence 1 1112236999999999854 346899999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEcccccccCccHHHHhccCCC--CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 -------TAAYVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 -------~i~~v~Q~~~l~~~ti~~Ni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++||||+|++|++||+|||.+|.+ +++++++++++.++++++++.+|+|++|.+||+|.+||||||||++
T Consensus 411 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 411 TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 3799999999999999999999853 7899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
||||++++|+|+|||||||+||+++++.+++. +....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.+
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999988765 45555789999999999999999999999999999999999999988
Q ss_pred ccHHHHHHH
Q 000702 667 TDFNALVSA 675 (1343)
Q Consensus 667 ~~~~~~~~~ 675 (1343)
+.|.+++..
T Consensus 570 ~~y~~l~~~ 578 (582)
T PRK11176 570 GVYAQLHKM 578 (582)
T ss_pred ChHHHHHHH
Confidence 888888753
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=674.99 Aligned_cols=527 Identities=18% Similarity=0.205 Sum_probs=423.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000702 782 ILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFR 861 (1343)
Q Consensus 782 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~ 861 (1343)
+++.++..++.++.++.++...+.............+..+++++.++..++.+++.++....+.+....++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666766665554221111111223344445555566677788888889999999999999999999999
Q ss_pred cccccccccChhhhHHHHhhhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 862 APMSFFDSTPAGRILNRVSIDQSVVDLDIPF-RLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASS 940 (1343)
Q Consensus 862 ~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 940 (1343)
.|+.. .|..++++++|++.+...+.. .+..++..++.++. ++++++++|++.++++..+++++.+..++.+..
T Consensus 92 ~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~ 165 (544)
T TIGR01842 92 ATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRAT 165 (544)
T ss_pred CcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99843 366789999999999987766 44555555554443 456788888877665544444444444555555
Q ss_pred HHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000702 941 RELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFA-FCMV 1019 (1343)
Q Consensus 941 r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~ 1019 (1343)
++..+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+..........+......++..+... +..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677788889999999999999999999999999998888877666555444443333333333222211 1112
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEE
Q 000702 1020 LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIEL 1099 (1343)
Q Consensus 1020 ~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f 1099 (1343)
.......|.+++|.+..++.+...+..++..+...+..+.....+.+|+.++.+.+++.+.. ...+ +..+.|++
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~---~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLP---EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCC---CCCCeEEE
Confidence 22334578899999999999999999999999999999999999999999999766553211 1111 23468999
Q ss_pred EEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecC
Q 000702 1100 IDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ 1179 (1343)
Q Consensus 1100 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQ 1179 (1343)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.+|+++++|||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 000702 1180 DPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258 (1343)
Q Consensus 1180 dp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLD 1258 (1343)
||.+|++|+|+|+..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998654 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhh
Q 000702 1259 EATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1259 EaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
||||+||.+|++.|.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 480 Epts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999875 5799999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=646.65 Aligned_cols=465 Identities=26% Similarity=0.401 Sum_probs=358.3
Q ss_pred eEEEEeeEEEecCCCC-CCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCC----CcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI----SGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~----~G~i~~~g---------- 515 (1343)
.++++|++..|...+. ..+++||||++.+||.+||||+|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999988875532 25999999999999999999999999999999999999987 89999887
Q ss_pred -------eEEEEccccc-ccC--ccHHHHh----ccCCCCC-HHHHH---HHHHHhhhhhhHhhccCCCccccCCCCCCC
Q 000702 516 -------TAAYVSQSAW-IQS--GNIEENI----LFGSPMD-KAKYK---KVIHACSLKKDLELFSHGDQTIIGDRGINL 577 (1343)
Q Consensus 516 -------~i~~v~Q~~~-l~~--~ti~~Ni----~~g~~~~-~~~~~---~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 577 (1343)
.|||++|+|+ .+| .||.+-| ....+.+ ++..+ +.++..++.+. ... ......|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~-------~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDP-------ERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCCh-------hhh--ccCCccc
Confidence 3899999986 333 3554444 3333221 22222 33333333322 211 4567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEE
Q 000702 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRII 654 (1343)
Q Consensus 578 SgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~ 654 (1343)
||||||||.||+||..+|++||+||||+|||+.+..+|++. ++.+. .|.++|+|||++..+.. ||+|+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999875 44433 58999999999999875 9999999999999
Q ss_pred EecChHHHHhcCcc-HHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHH
Q 000702 655 QAGKYDDLLQAGTD-FNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQK 733 (1343)
Q Consensus 655 ~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1343)
|.|+.++++++... |.+..
T Consensus 235 E~G~~~~i~~~p~hpYT~~L------------------------------------------------------------ 254 (539)
T COG1123 235 ETGPTEEILSNPQHPYTRGL------------------------------------------------------------ 254 (539)
T ss_pred EecCHHHHHhccCCcccHHH------------------------------------------------------------
Confidence 99999998753110 00000
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCC
Q 000702 734 AIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813 (1343)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 813 (1343)
+.+ .+..
T Consensus 255 -----------------------------------l~a--------------------------------------~p~~ 261 (539)
T COG1123 255 -----------------------------------LAA--------------------------------------VPRL 261 (539)
T ss_pred -----------------------------------Hhh--------------------------------------CCCc
Confidence 000 0000
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhh
Q 000702 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFR 893 (1343)
Q Consensus 814 ~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~ 893 (1343)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCc
Q 000702 894 LGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQ 973 (1343)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~ 973 (1343)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 974 EKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053 (1343)
Q Consensus 974 ~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~ 1053 (1343)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcC---------CCCcccccceeEecCC
Q 000702 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGE---------NLPLVLHGITCAFPGG 1124 (1343)
Q Consensus 1054 ~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vL~~is~~I~~G 1124 (1343)
..+... .......-+....++++|++.+|.. ....+++||||++++|
T Consensus 262 ---------------------~~~~~~---~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G 317 (539)
T COG1123 262 ---------------------GDEKII---RLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317 (539)
T ss_pred ---------------------cccccc---ccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC
Confidence 000000 0000000002235899999999974 1246899999999999
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCee--cCCCChHHHhhcceeecCCcccc---CCchhhhcC-CCC--
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID--ISTIGLHDLRSRLGIIPQDPNLF---EGTIRCNLD-PLE-- 1196 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~d--i~~i~l~~LR~~i~iVpQdp~lF---~gTIr~NLd-p~~-- 1196 (1343)
|++||||.||||||||.++|+|+++|++|+|.++|.| .+.-....+|+++-+|+|||+-. ..||+++|. |..
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 9999999999999999999999999999999999977 33333556888999999999743 359999985 332
Q ss_pred -CC----CHHHHHHHHHHcCCch-HHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 000702 1197 -EH----SDREIWEALDKSQLGD-IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270 (1343)
Q Consensus 1197 -~~----sd~ei~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~ 1270 (1343)
.. ..+.+-+.|++++|.+ +..+.| ..||||||||+||||||..+|++||+|||||+||+-+.+
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa 466 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA 466 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHH
Confidence 11 1234777899999986 454444 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1271 LIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1271 ~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
.|.+.|.+.-+ +.|.|+|||++..+.. ||||+||++|+|||.|+.+++.+++...|.+...+.
T Consensus 467 ~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 467 QVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99999887543 6899999999999987 999999999999999999999999887776665543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-68 Score=668.96 Aligned_cols=544 Identities=21% Similarity=0.268 Sum_probs=431.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHE-GYILAGIFFSAKLVETITTRQWYLGVDILG 204 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (1343)
+..+++.+++.++...++.++..++..+.|+++..++|.+......... ...+++++++..++..++.....+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888899999999999999999999976432221111 112222333344445555555566677888
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 205 MHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLI 283 (1343)
Q Consensus 205 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~ 283 (1343)
.++...++..+|+|.++++...+++.++|+++|++++|++.+.+.+. .+..+....+.+++++++++...++.+++.++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~ 173 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999988654 33444444444444444444433344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000702 284 ATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF--- 360 (1343)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~--- 360 (1343)
++++.+++..+..++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+.......
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566667777778888888888899999999999999999999998888877655433332222111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 000702 361 -ITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDA 439 (1343)
Q Consensus 361 -~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~ 439 (1343)
...+......++ ++.++.+ +..+.++.|.+++++.++..+..|+..++..+..+.++..+.+|+.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 011111111111 1222223 4678899999999999999999999999999999999999999999999866432211
Q ss_pred ccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe---
Q 000702 440 TIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--- 516 (1343)
Q Consensus 440 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--- 516 (1343)
. .. ......|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 332 ~-~~--~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 D-DR--PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred C-cc--CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 1 11 112346999999999863 357999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 517 ----------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 517 ----------i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
++||||+|++|++||+|||.+|++.++++..+++++++++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 8999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
||||++++|+|+|||||||+||+++++++.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999888655 55556789999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHH
Q 000702 667 TDFNALVSAHH 677 (1343)
Q Consensus 667 ~~~~~~~~~~~ 677 (1343)
+.|.++++.+.
T Consensus 566 ~~y~~l~~~~~ 576 (592)
T PRK10790 566 GRYWQMYQLQL 576 (592)
T ss_pred CHHHHHHHHHh
Confidence 99998876543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-68 Score=668.49 Aligned_cols=544 Identities=20% Similarity=0.250 Sum_probs=448.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
++.+++.+++.++++.++.++..++....|++++.+++....... ....+.+++++++..++..++.....+...+.+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999999999999986543221 1112222333444445555555555566788899
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 206 ~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~ 284 (1343)
++...++..+|+|.++.+.+.+++.+.|++++++++|++++.+++. .+..++...+.++++++++++.-++.+++.+++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654 455666666666666666666555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 285 TIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFI 364 (1343)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 364 (1343)
+++++.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPI 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888899999999999999999999999999999999999999888887776655544433333322222222
Q ss_pred HHH--HHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 000702 365 FWS--SPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIV 442 (1343)
Q Consensus 365 ~~~--~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~ 442 (1343)
... ....+.++.++++.+..+.+|+|.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+.....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 323 (571)
T TIGR02203 244 TQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 111 112334566778888899999999999999999999999999999999999999999999999876543321111
Q ss_pred cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------
Q 000702 443 LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------- 515 (1343)
Q Consensus 443 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 515 (1343)
.......++++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 --~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 324 --IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred --CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 11123469999999998643 46899999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEcccccccCccHHHHhccCC--CCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGS--PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
.++||||+|++|++|+||||.++. +.++++++++++.|++++++..+|+|++|.+|++|.+|||||||||+|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 389999999999999999999996 488999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGT 667 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 667 (1343)
|||++++|+|++||||||+||+++++++.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+|+++++..+
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 9999999999999999999999999998765 455567899999999999999999999999999999999999998777
Q ss_pred cHHHHHH
Q 000702 668 DFNALVS 674 (1343)
Q Consensus 668 ~~~~~~~ 674 (1343)
.|.++..
T Consensus 560 ~~~~~~~ 566 (571)
T TIGR02203 560 LYAQLHN 566 (571)
T ss_pred HHHHHHH
Confidence 7776543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-69 Score=726.72 Aligned_cols=513 Identities=19% Similarity=0.257 Sum_probs=427.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHH
Q 000702 817 VLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGG 896 (1343)
Q Consensus 817 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~ 896 (1343)
.+...+++++++..++.+++.+++...+.+..++++.++++++++.|++|||..+.|++.+|++.|++.+...+...+..
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~ 177 (1466)
T PTZ00265 98 DIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFIT 177 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHH
Q 000702 897 FASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKR 976 (1343)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~ 976 (1343)
++..++.+++.++++++.+|.+.++++.++++++++..++.+..+...+......+...+.+.|+++|++|||+|+.|++
T Consensus 178 ~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 257 (1466)
T PTZ00265 178 IFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKT 257 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHH
Confidence 99999999999999999999998887777777666666677776777777777778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcC--------CCCCHHHHHHHHHHHHHHHHH
Q 000702 977 FMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL-LVSFPH--------GAIDPSMAGLAVTYGLNLNAR 1047 (1343)
Q Consensus 977 ~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~--------g~~~~~~~gl~l~~~~~~~~~ 1047 (1343)
+.+++.+..+...+..........+......++..+..+++..+ ...... +.+++|.+...+.+.+.....
T Consensus 258 ~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~ 337 (1466)
T PTZ00265 258 ILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFM 337 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHH
Confidence 99999888777766655544433333333333222111111111 111112 245666555444444443444
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCC-CcccccceeEecCCCE
Q 000702 1048 LSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENL-PLVLHGITCAFPGGKK 1126 (1343)
Q Consensus 1048 l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~is~~I~~Gek 1126 (1343)
+..+...+..+.....|.+|+.+.++.+++.+.. .. ....|..+.|+|+||+|+|+... .++|+|+||+|++||+
T Consensus 338 l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~ 413 (1466)
T PTZ00265 338 LTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKT 413 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCE
Confidence 5566677888899999999999999866553211 11 11123335799999999997532 4699999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCcceEEE-cCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC---------
Q 000702 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIII-DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE--------- 1196 (1343)
Q Consensus 1127 vgIVGrTGsGKSTLl~~L~rl~~~~~G~I~I-dG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~--------- 1196 (1343)
+||||+||||||||+++|.|+|+|++|+|++ ||.|+++++.+++|++|++|||+|.||++||++||....
T Consensus 414 vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~ 493 (1466)
T PTZ00265 414 YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchh
Confidence 9999999999999999999999999999999 579999999999999999999999999999999997521
Q ss_pred -------------------------------------------------CCCHHHHHHHHHHcCCchHHhcccCCCCccc
Q 000702 1197 -------------------------------------------------EHSDREIWEALDKSQLGDIVRGKDQKLETPV 1227 (1343)
Q Consensus 1197 -------------------------------------------------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v 1227 (1343)
+.+|+++++|++.+++++++.++|+||||.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~v 573 (1466)
T PTZ00265 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLV 573 (1466)
T ss_pred ccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCcee
Confidence 2567899999999999999999999999999
Q ss_pred ccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccccCEEEEEe
Q 000702 1228 LENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLVLS 1305 (1343)
Q Consensus 1228 ~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~ 1305 (1343)
+++|.+||||||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||+
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~ 653 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLS 653 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875 4899999999999999999999999
Q ss_pred CC-----------------------------------------------EEeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1306 DG-----------------------------------------------RVAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1306 ~G-----------------------------------------------~ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
+| +|+|+|+|+||+++++|.|+.|++.+
T Consensus 654 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 654 NRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred CCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 86 59999999999987789999999664
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=617.72 Aligned_cols=529 Identities=25% Similarity=0.346 Sum_probs=434.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 139 LNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRK 218 (1343)
Q Consensus 139 ~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~K 218 (1343)
+..++.++..++...+-+++..+++.+-.... ....+.++++++++.++.+++.+......++.+.++|..||..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777776544331 22344566677778888888888888888999999999999999999
Q ss_pred HhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 219 GLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWM---LPLQIILALAILYKNVGIASVATLIATIISIVVTVP 294 (1343)
Q Consensus 219 ~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~---~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~~~~~ 294 (1343)
..++++.+..+.++|++.++++.-++.+..++. |+..... .|+.++++++.+ -..++++-++.++++.++.+.
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~---~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFF---NWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764 5554443 344333333333 234455556666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 295 VAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYR----IQLEEMRGVEFRWLRKALYSQAFITFIFWSSPI 370 (1343)
Q Consensus 295 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~----~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 370 (1343)
++++.++..++++..........-+.++|+.++|.|+..+... +.-++.|+..|+.+|-......+.-++.+.+ +
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-i 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-I 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 8888888888899998889999999999999999999865544 4456789999998887766655555443333 3
Q ss_pred HHHHHHHHHHHHhC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-cCCCCC
Q 000702 371 FVAAVTFGTSILLG-AQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIV-LPRGMT 448 (1343)
Q Consensus 371 ~~~~~~f~~~~~~~-~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~-~~~~~~ 448 (1343)
.+.++.++ +.+.+ |++|....+.++.+...+..|++.+...++.-.++..+.+++..|++.|....+.... ......
T Consensus 239 AlvAv~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 239 ALVAVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HHHHHHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 33333334 44455 6999999999999999999999999999999999999999999999988765433221 111112
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
...+..+|++|.|++ ++++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+||
T Consensus 318 ~~ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 234556699999864 34899999999999999999999999999999999999999999999998
Q ss_pred eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 516 TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
+++||+|+|++|++||||||+|+++ .+++++.++++..++.+.++. |+|.+|.+||+|.+|||||+|||+||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999998 678999999999999999999 99999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHH
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 674 (1343)
+++||||||||+||+++++.|.+ .+..+.++||+|+||||++.+..||+|++|++|+++++|+|+++.++++.|.+++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~-~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQ-ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHH-HHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 99999999999999999877754 56677789999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 000702 675 AHH 677 (1343)
Q Consensus 675 ~~~ 677 (1343)
.+.
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=660.61 Aligned_cols=544 Identities=22% Similarity=0.279 Sum_probs=426.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLG-GKETF--PHEGYILAGIFFSAKLVETITTRQWYLGVDI 202 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (1343)
++.+++.+++.++++.++.++..++..+.|++++.++|... .+... ....+..++++++..++..++.....+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (574)
T PRK11160 7 FLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHD 86 (574)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467888888999999999999999999999999999642 22100 0111111223333444555555555566778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 203 LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVAT 281 (1343)
Q Consensus 203 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~ 281 (1343)
.+.++...++..+|+|.++++...+++.++|++++++++|++.+.+++. .+..+....+.+++++++++...+..+++.
T Consensus 87 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 166 (574)
T PRK11160 87 ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTL 166 (574)
T ss_pred HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998764 445555555656555555544433333333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 282 LIATI-ISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF 360 (1343)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 360 (1343)
+++++ +.+.+..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (574)
T PRK11160 167 GGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGL 246 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23334566677778888888999999999999999999999999999988888777655443333333222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 000702 361 ITFIFW--SSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRI-LQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQE 437 (1343)
Q Consensus 361 ~~~~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~-l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~ 437 (1343)
...+.. .....+.++.++.+. .++.+++|.+++++.+... ...|+..++..+..++++.+|.+|+.++++.++..+
T Consensus 247 ~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~ 325 (574)
T PRK11160 247 SQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVT 325 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 221111 111223344566665 4778999998888777544 356888899999999999999999999998764322
Q ss_pred ccccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-
Q 000702 438 DATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT- 516 (1343)
Q Consensus 438 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~- 516 (1343)
..... ........++++|++|+|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 326 ~~~~~-~~~~~~~~i~~~~v~f~y~~-~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 326 FPTTS-TAAADQVSLTLNNVSFTYPD-QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred CCccc-CCCCCCCeEEEEEEEEECCC-CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 11111 11112346999999999854 3357999999999999999999999999999999999999999999999983
Q ss_pred ------------EEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 517 ------------AAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 517 ------------i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
++||+|+|++|++||+|||.+|.+ .++++..++++.++++++++. |+|++|.+||+|.+|||||||
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrq 482 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQR 482 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHH
Confidence 899999999999999999999976 688899999999999999999 999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|++||||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+|++
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999998888664 55566799999999999999999999999999999999999999
Q ss_pred hcCccHHHHHH
Q 000702 664 QAGTDFNALVS 674 (1343)
Q Consensus 664 ~~~~~~~~~~~ 674 (1343)
+.++.|.++++
T Consensus 562 ~~~g~y~~l~~ 572 (574)
T PRK11160 562 AQQGRYYQLKQ 572 (574)
T ss_pred hcCcHHHHHHh
Confidence 99988888764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=660.34 Aligned_cols=541 Identities=26% Similarity=0.355 Sum_probs=431.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
++.+++ ++ .++...++.++..++....|+++..+++.+... ....+.+...+++..++..++.....+...+.+.
T Consensus 7 l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 81 (567)
T COG1132 7 LLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQ 81 (567)
T ss_pred HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455 77 888888999999999999999999999987611 1112222222333333444444445555566778
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHD-IWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 206 ~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~-~~~~~~~i~~~~~~l~~~~g~~~l~~~~~ 284 (1343)
++...++..+|+|.++++...+++.++|++++++++|++.+...+..... +..+++.++..+++++......+++.++.
T Consensus 82 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 161 (567)
T COG1132 82 KIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLI 161 (567)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987655323 33345555555555554433344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000702 285 TIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFIT-F 363 (1343)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~-~ 363 (1343)
.+++..+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++..+..+...+...+......... .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (567)
T COG1132 162 LPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPL 241 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666667888888999999999999999999999999999987766665544433332222122222221 1
Q ss_pred H-HHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 000702 364 I-FWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIV 442 (1343)
Q Consensus 364 ~-~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~ 442 (1343)
. .........++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+..+..|.+|+.++++.++...+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 321 (567)
T COG1132 242 MLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC
Confidence 1 112223344566777777888899999999999999999999999999999999999999999999986542222111
Q ss_pred cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------
Q 000702 443 LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------- 515 (1343)
Q Consensus 443 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 515 (1343)
.......|+++|++|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 322 --~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~ 397 (567)
T COG1132 322 --LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS 397 (567)
T ss_pred --CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcC
Confidence 1112346999999999863 46899999999999999999999999999999999999999999999988
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+++||||+|++|++||+|||.+|++ .++++..++++.++++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 398 ~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiA 477 (567)
T COG1132 398 LDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHH
Confidence 3899999999999999999999988 688999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCcc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 668 (1343)
||++++|+|+|||||||+||+++++.+.+. +....++||+|+|+||++.+.+||+|+||++|+|++.|+|+||++.++.
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~-l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~ 556 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGL 556 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHH-HHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence 999999999999999999999998888765 4455588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000702 669 FNALVSAH 676 (1343)
Q Consensus 669 ~~~~~~~~ 676 (1343)
|.+++..+
T Consensus 557 y~~l~~~~ 564 (567)
T COG1132 557 YARLYQAQ 564 (567)
T ss_pred HHHHHHHh
Confidence 99988654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-67 Score=660.97 Aligned_cols=549 Identities=21% Similarity=0.286 Sum_probs=436.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 124 SLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDIL 203 (1343)
Q Consensus 124 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (1343)
+.++.+++.+++.+++..++.++..++.++.|++++.++|.+-...+.. ....+++++++..++..+......+...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888889999999999999999999999743221111 111122223333333444445555667788
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 204 GMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATL 282 (1343)
Q Consensus 204 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~ 282 (1343)
+.++...++..+|+|+++++...+++.+.|++++++++|++.+.+++. .+..++...+.+++++++++...++.+++.+
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999998999999999999999999988653 3444455555555554444433333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 283 IATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFIT 362 (1343)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 362 (1343)
+.+++.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.........
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566788888888999999999999999999999999999999999887777765544443332222222111
Q ss_pred HHH--HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 000702 363 FIF--WSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT 440 (1343)
Q Consensus 363 ~~~--~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~ 440 (1343)
.+. ......+.++.+|++.+..+.+|+|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 325 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Confidence 111 111223345567888888899999999999999999999999999999999999999999999998654322111
Q ss_pred cc-cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----
Q 000702 441 IV-LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---- 515 (1343)
Q Consensus 441 ~~-~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 515 (1343)
.. ....+....|+++|++|+|+++.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 326 ~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 326 HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405 (576)
T ss_pred CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 00 0111112469999999999653346899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 ---------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 ---------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.++|+||+|++|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+||+|.+||||||||+
T Consensus 406 ~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 406 QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred hcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 4899999999999999999999876 578889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+||||++++|+++|||||||+||+++++.+++. +....+++|+|+||||++.++.||+|++|++|++++.|+++++.+.
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQA-LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999998877654 5555679999999999999999999999999999999999999988
Q ss_pred CccHHHHHH
Q 000702 666 GTDFNALVS 674 (1343)
Q Consensus 666 ~~~~~~~~~ 674 (1343)
++.|.+++.
T Consensus 565 ~~~~~~l~~ 573 (576)
T TIGR02204 565 GGLYARLAR 573 (576)
T ss_pred CChHHHHHh
Confidence 887777653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=669.54 Aligned_cols=547 Identities=19% Similarity=0.248 Sum_probs=446.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 123 PSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDI 202 (1343)
Q Consensus 123 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (1343)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+....+ ....+.++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888889889999999999999999999999997753221 1122333444455555566666666667788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 203 LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVAT 281 (1343)
Q Consensus 203 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~ 281 (1343)
++.++...++..+|+|+++++..++++.++|++++++ +|++.+.+++. .+.......+.+++.+++++...++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 69999988653 333333333333444445555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 282 LIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFI 361 (1343)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 361 (1343)
++++++++.+..++.++.++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++.+..++..+...+........
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777788888888888889999999999999999999999999999888888776555444433333332222
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 000702 362 TFIFW--SSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDA 439 (1343)
Q Consensus 362 ~~~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~ 439 (1343)
..+.. .....+.++++|++.+..+.+|+|.++++..+...+..|+..+...+..+++++++++|+.++++.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22111 1122334567888888899999999999999999999999999999999999999999999999876543221
Q ss_pred ccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe---
Q 000702 440 TIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--- 516 (1343)
Q Consensus 440 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--- 516 (1343)
. ..+.......|+++|++|+|++ +++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 445 ~-~~~~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 445 G-LAALPELRGAITFENIRFRYAP-DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred C-CCCCCCCCCeEEEEEEEEEcCC-CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 1 1111112346999999999864 3457999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 517 ----------AAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 517 ----------i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
++||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|++|.+|++|.+||||||||+
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 799999999999999999999875 678889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+||||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 999999999999999999999999999888765 4555678999999999999999999999999999999999999998
Q ss_pred CccHHHHHH
Q 000702 666 GTDFNALVS 674 (1343)
Q Consensus 666 ~~~~~~~~~ 674 (1343)
++.|.++++
T Consensus 682 ~~~y~~l~~ 690 (694)
T TIGR01846 682 QGLYARLWQ 690 (694)
T ss_pred CChHHHHHH
Confidence 888888765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-67 Score=653.74 Aligned_cols=507 Identities=20% Similarity=0.241 Sum_probs=397.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
++.+++.+++.++...++.++..++..+.|++++.++|.+..... ....+.+++++++..++..++.....+...+.+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888889999999999999999999997643221 1111111111222334444444444555677888
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 206 ~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~ 284 (1343)
++...++..+|+|.++++...+++.++|++++++++|++++.+.+. .+..++...+.+++++++++...+..+++.++.
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 162 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAG 162 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654 344455555555555555554444444444444
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 285 TIISIVVT-VPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITF 363 (1343)
Q Consensus 285 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 363 (1343)
++++.++. .+..+..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02868 163 LLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAA 242 (529)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 33344456666777888899999999999999999999999999888887665554444443333333222
Q ss_pred HHHH--HHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 000702 364 IFWS--SPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATI 441 (1343)
Q Consensus 364 ~~~~--~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~ 441 (1343)
+... ....+.+++++.+.+.++.+|+|.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 322 (529)
T TIGR02868 243 AQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV 322 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence 2211 11223345677788888999999999999999999999999999999999999999999999987654221110
Q ss_pred c--cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----
Q 000702 442 V--LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---- 515 (1343)
Q Consensus 442 ~--~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 515 (1343)
. .........|+++|++|+|++ ++++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.++|
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 323 PAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS 400 (529)
T ss_pred CCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 0 001112346999999999854 34799999999999999999999999999999999999999999999999
Q ss_pred --------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 --------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 --------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 401 ~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 401 SLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred hHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 6999999999999999999999975 6889999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCC
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~ 636 (1343)
||||++++|+|+|||||||+||+++++.+.+. +....+++|+|+||||+
T Consensus 481 iARall~~~~iliLDE~TSaLD~~te~~I~~~-l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 481 LARALLADAPILLLDEPTEHLDAGTESELLED-LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999988766 45566899999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=655.44 Aligned_cols=541 Identities=21% Similarity=0.286 Sum_probs=427.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 127 LAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMH 206 (1343)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1343)
..+++.+++.+++.+++.++..++.++.|++++.++|.+.... . .+.+++.+++..++..+......+...++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 11 LQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG---D-IFPLLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999999999999999999999775432 1 11111111122222222233334445667788
Q ss_pred HHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 207 VRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIAT 285 (1343)
Q Consensus 207 ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~ 285 (1343)
++..++..+|+|.++++...+.+.+.|++++++++|++.+.+... .+..+....+..++.+++++...++.+++.++++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 166 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLG 166 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999976532 3444444444343444444443334444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 000702 286 IISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFR----WLRKALYSQAFI 361 (1343)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~----~~~~~~~~~~~~ 361 (1343)
++...+...+.++.++..++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-++..+ ..+.......+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677788888888899999999999999999999999999999998877666554433322 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 000702 362 TFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATI 441 (1343)
Q Consensus 362 ~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~ 441 (1343)
.+. .....+.+++++++.+..+.+|+|.+++++.++..+..|+..+...+..+..+..+++|+.++++.++..+....
T Consensus 247 ~~~--~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 324 (588)
T PRK13657 247 RAA--STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG 324 (588)
T ss_pred HHH--HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 211 122334556778888889999999999999999999999999999999999999999999999876543221111
Q ss_pred ccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------
Q 000702 442 VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------ 515 (1343)
Q Consensus 442 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 515 (1343)
..+.......|+++|++|+|++ ++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 325 AIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred CCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC
Confidence 1111112236999999999953 35799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 -------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 -------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
.++||||+|++|++||||||+++++ .++++..++++.+++++++..+|+|++|.+|++|.+||||||||++|
T Consensus 403 ~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRial 482 (588)
T PRK13657 403 TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAI 482 (588)
T ss_pred CHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHH
Confidence 4899999999999999999999965 67888999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGT 667 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 667 (1343)
|||++++|+|+|||||||+||+++++.+++.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++
T Consensus 483 ARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~ 561 (588)
T PRK13657 483 ARALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGG 561 (588)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCC
Confidence 99999999999999999999999999887654 45557899999999999999999999999999999999999998888
Q ss_pred cHHHHHHHH
Q 000702 668 DFNALVSAH 676 (1343)
Q Consensus 668 ~~~~~~~~~ 676 (1343)
.|.++++..
T Consensus 562 ~y~~l~~~~ 570 (588)
T PRK13657 562 RFAALLRAQ 570 (588)
T ss_pred hHHHHHHHh
Confidence 888877643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-69 Score=678.95 Aligned_cols=484 Identities=24% Similarity=0.356 Sum_probs=357.1
Q ss_pred ceEEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 450 VAIQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
..++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3699999999985322 34799999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEcccc--ccc-CccHHHHhccCCC----CCHH----HHHHHHHHhhhhhhHhhccCCCcccc
Q 000702 516 --------------TAAYVSQSA--WIQ-SGNIEENILFGSP----MDKA----KYKKVIHACSLKKDLELFSHGDQTII 570 (1343)
Q Consensus 516 --------------~i~~v~Q~~--~l~-~~ti~~Ni~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~i 570 (1343)
.++||+|+| -++ ..||+|||.++.. .+.. +..++++..++.+ .....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHH
Confidence 389999998 344 4699999987521 2221 2223333333311 01234
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEecCCCcccc-CCEEEE
Q 000702 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-A-NKTVIFVTHQVEFLPA-ADFILV 647 (1343)
Q Consensus 571 g~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~-~~t~i~vtH~~~~l~~-~d~i~~ 647 (1343)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+. ++.+. + |+|+|+|||+++.+.. ||+|++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 567788999999999999999999999999999999999998888764 44432 3 8999999999998764 999999
Q ss_pred EeCCeEEEecChHHHHhcCcc-HHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccC
Q 000702 648 LKEGRIIQAGKYDDLLQAGTD-FNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDG 726 (1343)
Q Consensus 648 l~~G~i~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1343)
|++|++++.|+++++...... |..-
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~~~~------------------------------------------------------ 267 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPYTRA------------------------------------------------------ 267 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChhhhh------------------------------------------------------
Confidence 999999999998876431100 0000
Q ss_pred CchhHHHHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 000702 727 SSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQT 806 (1343)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 806 (1343)
++.+. .. +..+..
T Consensus 268 -----------------------------------------l~~~~----------------------~~--~~~~~~-- 280 (623)
T PRK10261 268 -----------------------------------------LLAAV----------------------PQ--LGAMKG-- 280 (623)
T ss_pred -----------------------------------------hhhcc----------------------Cc--cccccc--
Confidence 00000 00 000000
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhh
Q 000702 807 EGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVV 886 (1343)
Q Consensus 807 ~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~i 886 (1343)
.. .|-.
T Consensus 281 -~~----------------------------------------------------~~~~--------------------- 286 (623)
T PRK10261 281 -LD----------------------------------------------------YPRR--------------------- 286 (623)
T ss_pred -cc----------------------------------------------------CCcc---------------------
Confidence 00 0000
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccch
Q 000702 887 DLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAS 966 (1343)
Q Consensus 887 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~ 966 (1343)
.+.
T Consensus 287 ---~~~-------------------------------------------------------------------------- 289 (623)
T PRK10261 287 ---FPL-------------------------------------------------------------------------- 289 (623)
T ss_pred ---ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred heeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 000702 967 TIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNA 1046 (1343)
Q Consensus 967 tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~ 1046 (1343)
..
T Consensus 290 --------------------------------------------------------------~~---------------- 291 (623)
T PRK10261 290 --------------------------------------------------------------IS---------------- 291 (623)
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCC-CCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCC---------CCccccc
Q 000702 1047 RLSRWILSFCKLENKIISIERIYQYSQIPG-EAPPVIEDSRPPSSWPENGTIELIDLKVRYGEN---------LPLVLHG 1116 (1343)
Q Consensus 1047 ~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~-e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vL~~ 1116 (1343)
...+. +.+...... .+ +...-++++|++++|+.. ...+|+|
T Consensus 292 -------------------------~~~~~~~~~~~~~~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~ 342 (623)
T PRK10261 292 -------------------------LEHPAKQEPPIEQDT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEK 342 (623)
T ss_pred -------------------------cccccccCccccccc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEee
Confidence 00000 000000000 00 012259999999999621 1359999
Q ss_pred ceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH---HHhhcceeecCCcc--ccC-Cchhh
Q 000702 1117 ITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH---DLRSRLGIIPQDPN--LFE-GTIRC 1190 (1343)
Q Consensus 1117 is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~---~LR~~i~iVpQdp~--lF~-gTIr~ 1190 (1343)
|||+|++||++||||+||||||||+++|.|+++|++|+|.++|.++...+.. .+|++|+||||+|. ++. -|+++
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999877643 35778999999983 665 49999
Q ss_pred hcCC-C---CCCC----HHHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCC
Q 000702 1191 NLDP-L---EEHS----DREIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261 (1343)
Q Consensus 1191 NLdp-~---~~~s----d~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaT 1261 (1343)
|+.. . .... ++++.++|+.+++. +...+.| ..||||||||++|||||+.+|++|||||||
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPt 491 (623)
T PRK10261 423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAV 491 (623)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9852 1 1111 24577888999885 3433322 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHH-HHHHHH
Q 000702 1262 ASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMF-LKLVTE 1332 (1343)
Q Consensus 1262 s~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f-~~l~~~ 1332 (1343)
++||..+.+.|.+.|++..+ +.|||+|||+++.+.. ||||+||++|+|+|.|+++++..++...| +.++.+
T Consensus 492 s~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 492 SALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 99999999999999987643 6899999999999876 99999999999999999999987655545 445543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-66 Score=648.43 Aligned_cols=529 Identities=22% Similarity=0.288 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000702 144 AGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLS 223 (1343)
Q Consensus 144 ~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~K~l~l~ 223 (1343)
.++..++..+.|++++.++|.+..........+.++++++++.++..++.....+...+.+.++...++..+|+|+++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566777889999999999775432111122333334444445555555554555667889999999999999999999
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 224 SLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVG-IASVATLIATIISIVVTVPVAKVQEE 301 (1343)
Q Consensus 224 ~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g-~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (1343)
...+.+.++|++++++++|++.+..... .+..++..++.+++++++++..++ ..+++.++++++.+.+...+.++.++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986543 455555555555545444432222 34444455555556666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 000702 302 YQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFW--SSPIFVAAVTFGT 379 (1343)
Q Consensus 302 ~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~ 379 (1343)
..++.++..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+..........+.. .....+.++.+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999988777766543332222222222221111111 1112233456778
Q ss_pred HHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCcceEEEEeeEE
Q 000702 380 SILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEF 459 (1343)
Q Consensus 380 ~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~~~~~~f 459 (1343)
+.+.++.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..+..... .+.....|+++|++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~--~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEP--VPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCC--CCCCCCcEEEEEEEE
Confidence 888899999999999999999999999999999999999999999999999876432211111 111223699999999
Q ss_pred EecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eEEEEcccccc
Q 000702 460 CWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAAYVSQSAWI 526 (1343)
Q Consensus 460 ~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~~v~Q~~~l 526 (1343)
+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++||+|+|++
T Consensus 322 ~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCC-CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 9864 346899999999999999999999999999999999999999999999987 37999999999
Q ss_pred cCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 000702 527 QSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFS 605 (1343)
Q Consensus 527 ~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s 605 (1343)
|++|++|||.+|.+ .++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999964 68889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHHH
Q 000702 606 AVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAH 676 (1343)
Q Consensus 606 ~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 676 (1343)
+||+++++++.+. +....+++|+|+||||++.++.||+|++|++|+++++|+++++++..+.|.+++..+
T Consensus 481 ~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999988765 455567999999999999999999999999999999999999999888888877654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=641.31 Aligned_cols=543 Identities=18% Similarity=0.250 Sum_probs=428.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
++.+++.+++.++...++.++..++..+.|++++.++|.+..... . ..+++..++..++..+......+...++..
T Consensus 10 l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 10 ALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--V--LPTLALWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999999999999999997654321 1 111111112223333333333445567788
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 206 ~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~ 284 (1343)
+++..++..+|+|.++++.+.+++.++|++++++++|++.+.+++. .+..+...++.+++++++++...+..+++.+++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 165 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999987653 344445555555555444444434444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 285 TIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFI 364 (1343)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 364 (1343)
+++.+.+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+..........+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777888888888888889999999999999999999999998887777665443222222211111111111
Q ss_pred H--HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 000702 365 F--WSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIV 442 (1343)
Q Consensus 365 ~--~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~ 442 (1343)
. ......+.++.+|.+.+..+.+|+|.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..++....
T Consensus 246 ~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 325 (585)
T TIGR01192 246 NRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADA 325 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccC
Confidence 1 11122334566788888899999999999999999999999999999999999999999999999865432211110
Q ss_pred cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------
Q 000702 443 LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------- 515 (1343)
Q Consensus 443 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 515 (1343)
.+.......++++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 403 (585)
T TIGR01192 326 PELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT 403 (585)
T ss_pred CCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC
Confidence 011112236999999999853 34789999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
.++||+|+|++|++|++|||.++.+ .++++.+++++.+++++.+..+|+|++|.+|++|.+||||||||++||
T Consensus 404 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 404 RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred HHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 3799999999999999999999965 567788888999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCcc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 668 (1343)
||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|++++++++++.
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~-l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 562 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNA-IDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGR 562 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCCh
Confidence 999999999999999999999998888654 5555679999999999999999999999999999999999999998888
Q ss_pred HHHHHHH
Q 000702 669 FNALVSA 675 (1343)
Q Consensus 669 ~~~~~~~ 675 (1343)
|.+++..
T Consensus 563 y~~l~~~ 569 (585)
T TIGR01192 563 FYKLLRR 569 (585)
T ss_pred HHHHHHh
Confidence 8887753
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=648.84 Aligned_cols=514 Identities=18% Similarity=0.142 Sum_probs=401.0
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000702 784 AQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAP 863 (1343)
Q Consensus 784 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p 863 (1343)
+.++..+..+..+++++.+.+... .. .. ..+..++++.++..++.++..++....+.+...+++.++++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEEN--FL--GQ-GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--cc--cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344445555556666665543210 00 00 12223444555566777888888899999999999999999999999
Q ss_pred cccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 864 MSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSREL 943 (1343)
Q Consensus 864 ~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l 943 (1343)
+.||++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.+.++++.++++.+++..++.+..++.
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 477778888888888889999999988876665555555555554555555
Q ss_pred HHHHHHhhchHHHHHHHhhccchheeecCcHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 944 VRIVSIQKSPIIHLFGESIAGASTIRGFGQEK--RFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLL 1021 (1343)
Q Consensus 944 ~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1021 (1343)
.+......+.+.+++.|.+.|+++||+|+.++ ...+++.+..+...+.................++..+...+ .+.
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 257 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGC--ALF 257 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 55666677889999999999999999999854 44555555555554443322222222212122221111111 111
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCCCC--CC-CCC--CCCCCCCce
Q 000702 1022 VSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVI--ED-SRP--PSSWPENGT 1096 (1343)
Q Consensus 1022 ~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~--~~-~~~--~~~wp~~g~ 1096 (1343)
+....+.++.|.+..++.|...+..++..+...+.+++....+.+|+.++.+.+.+++... .+ ... .+.....+.
T Consensus 258 ~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (555)
T TIGR01194 258 AAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDS 337 (555)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCce
Confidence 1112367899999999999999999999999999999999999999999975322211110 00 000 011123468
Q ss_pred EEEEEEEEEEcCC---CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhc
Q 000702 1097 IELIDLKVRYGEN---LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~ 1173 (1343)
|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 9999999999753 2369999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1174 i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
+++|||||++|++|+++|+. ++.++++++++++.+++++++.++|+||||. .+||||||||++||||++++|+
T Consensus 418 i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 418 FSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred CcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999974 3578999999999999999999999999995 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-h-cCCcEEEEeccCcccccccCEEEEEeCCEEeee
Q 000702 1254 ILVLDEATASVDTATDNLIQKIIRT-E-FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~~l~~-~-~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~ 1312 (1343)
|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999887643 2 468999999999999999999999999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-68 Score=663.37 Aligned_cols=448 Identities=24% Similarity=0.398 Sum_probs=345.2
Q ss_pred eEEEEeeEEEecCC-CCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC---------
Q 000702 451 AIQIENAEFCWYPS-SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG--------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 515 (1343)
.++++|++++|+.+ ..+++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999998531 135799999999999999999999999999999999999986 799998865
Q ss_pred --------eEEEEccccc--cc-CccHHHHhccCC----CCCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCC
Q 000702 516 --------TAAYVSQSAW--IQ-SGNIEENILFGS----PMDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN 576 (1343)
Q Consensus 516 --------~i~~v~Q~~~--l~-~~ti~~Ni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 576 (1343)
.++|++|+|. ++ ..|+++|+.++. ..+. ++.+++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3799999985 33 468999986421 1222 2333444444442210 112456778
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000702 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPA-ADFILVLKEGRI 653 (1343)
Q Consensus 577 LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i 653 (1343)
|||||||||+|||||+.+|+++||||||++||+.+.+++.+. +..+ . .|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999998887654 4443 2 38999999999998764 999999999999
Q ss_pred EEecChHHHHhcCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHH
Q 000702 654 IQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQK 733 (1343)
Q Consensus 654 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1343)
++.|+.+++..... . + ..
T Consensus 236 ~~~g~~~~~~~~~~--------------------------------------~---------------~--------~~- 253 (529)
T PRK15134 236 VEQNRAATLFSAPT--------------------------------------H---------------P--------YT- 253 (529)
T ss_pred EEeCCHHHHhhCCC--------------------------------------C---------------H--------HH-
Confidence 99888766532100 0 0 00
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCC
Q 000702 734 AIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKV 813 (1343)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 813 (1343)
. .++..
T Consensus 254 ---~-----------------------------~~~~~------------------------------------------ 259 (529)
T PRK15134 254 ---Q-----------------------------KLLNS------------------------------------------ 259 (529)
T ss_pred ---H-----------------------------HHHHh------------------------------------------
Confidence 0 00000
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhh
Q 000702 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFR 893 (1343)
Q Consensus 814 ~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~ 893 (1343)
+
T Consensus 260 -------------------------------------------------~------------------------------ 260 (529)
T PRK15134 260 -------------------------------------------------E------------------------------ 260 (529)
T ss_pred -------------------------------------------------C------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCc
Q 000702 894 LGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQ 973 (1343)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~ 973 (1343)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 974 EKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053 (1343)
Q Consensus 974 ~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~ 1053 (1343)
.
T Consensus 261 ----------------------------------------------------~--------------------------- 261 (529)
T PRK15134 261 ----------------------------------------------------P--------------------------- 261 (529)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred HHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcC---------CCCcccccceeEecCC
Q 000702 1054 SFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGE---------NLPLVLHGITCAFPGG 1124 (1343)
Q Consensus 1054 ~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vL~~is~~I~~G 1124 (1343)
+ .++... ++ +....|+++|++++|+. +..++|+|+||+|++|
T Consensus 262 -------------~------~~~~~~-------~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G 312 (529)
T PRK15134 262 -------------S------GDPVPL-------PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG 312 (529)
T ss_pred -------------c------cccccc-------CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCC
Confidence 0 000000 00 01114899999999952 1246999999999999
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---HhhcceeecCCc--cccC-CchhhhcCCC---
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LRSRLGIIPQDP--NLFE-GTIRCNLDPL--- 1195 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR~~i~iVpQdp--~lF~-gTIr~NLdp~--- 1195 (1343)
|++||+|+||||||||+++|.|++ |++|+|.+||.++...+... +|++++||||+| .+|. .|+++|+...
T Consensus 313 e~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 999999999999999999999998 48999999999998776543 477899999998 3665 4999999631
Q ss_pred C--CCC----HHHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000702 1196 E--EHS----DREIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268 (1343)
Q Consensus 1196 ~--~~s----d~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~t 1268 (1343)
. ..+ ++.+.++++..++. +...+ ++ .+||||||||++|||||+.+|+||||||||++||+.+
T Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHR-------YP----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred ccccCChHHHHHHHHHHHHHcCCCHHHHhc-------CC----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence 1 011 24567788888885 23322 22 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1269 DNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1269 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++++++
T Consensus 461 ~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 461 QAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 9999999997643 7899999999999875 9999999999999999999998654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=638.25 Aligned_cols=522 Identities=20% Similarity=0.244 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 131 KSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSA 210 (1343)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 210 (1343)
|.+++.++...++.++..++..+.|+++++++|.+....+ ....+.++++++++.++..++.....+...+.+.++...
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999999999996642221 112233444455555666666666667778899999999
Q ss_pred HHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 211 LTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWY--LHDIWMLPLQIILALAILYKNVGIASVATLIATIIS 288 (1343)
Q Consensus 211 L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~--~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~ 288 (1343)
++..+|+|+++++.. ..+...+.+++|++++.+++.. +..+...++.++.+++ ++...++.+++.++.++++
T Consensus 81 lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 81 LNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLV-CFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHH
Confidence 999999999999873 2356788899999999886542 3344455554444333 3333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000702 289 IVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFW-- 366 (1343)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~-- 366 (1343)
+.+..+..++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+..
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777778888889999999999999999999999999999999888877666554443333332222222111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCC
Q 000702 367 SSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRG 446 (1343)
Q Consensus 367 ~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~ 446 (1343)
.....+.++++|++.+.++.+|+|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..++.. .. .
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~--~ 311 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PL--P 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CC--C
Confidence 11123345668888888999999999999999999999999999999999999999999999997765432211 11 1
Q ss_pred CCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------
Q 000702 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----------- 515 (1343)
Q Consensus 447 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 515 (1343)
..+..++++|++|+|++ +++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~~~~i~~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 12246999999999853 346899999999999999999999999999999999999999999999987
Q ss_pred --eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 516 --TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 516 --~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
.++||||+|++|++|++|||.++.+ .+++++.++++.+++++.++.+|+|++|.+|++|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 3899999999999999999997655 7888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
++|+++|||||||+||+++++.+.+. +... .+++|+|++|||++.+..||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999998888764 4444 36899999999999888899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=656.79 Aligned_cols=443 Identities=23% Similarity=0.337 Sum_probs=340.0
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC--CCcEEEECC-------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK--ISGEVRLCG------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g------------- 515 (1343)
.++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 589999999984 35799999999999999999999999999999999999996 899999987
Q ss_pred -eEEEEcccccccC-ccHHHHhccCCCC------CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 -TAAYVSQSAWIQS-GNIEENILFGSPM------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 -~i~~v~Q~~~l~~-~ti~~Ni~~g~~~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
.++|++|++.++. .|++||+.++... +.+...+.++ +-++.+ |..........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHH-----HHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 2899999987764 6999999987431 2211111111 112222 22223445677899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
|||++.+|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999888776433323358999999999998865 999999999999887653321000
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhh
Q 000702 667 TDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRK 746 (1343)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1343)
.
T Consensus 234 -----------------------------------------------------------------------~-------- 234 (506)
T PRK13549 234 -----------------------------------------------------------------------D-------- 234 (506)
T ss_pred -----------------------------------------------------------------------H--------
Confidence 0
Q ss_pred hhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHH
Q 000702 747 KQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALA 826 (1343)
Q Consensus 747 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~ 826 (1343)
..+ . +. + .
T Consensus 235 --~~~---~------------~~---~-----------------------------------~----------------- 242 (506)
T PRK13549 235 --IIT---M------------MV---G-----------------------------------R----------------- 242 (506)
T ss_pred --HHH---H------------hh---C-----------------------------------c-----------------
Confidence 000 0 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHH
Q 000702 827 FGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVG 906 (1343)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~ 906 (1343)
+
T Consensus 243 ------------------------------------~------------------------------------------- 243 (506)
T PRK13549 243 ------------------------------------E------------------------------------------- 243 (506)
T ss_pred ------------------------------------C-------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHH
Q 000702 907 IIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLD 986 (1343)
Q Consensus 907 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d 986 (1343)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000702 987 CFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIE 1066 (1343)
Q Consensus 987 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~e 1066 (1343)
. .
T Consensus 244 ------------------------------------------~------------------------------------~ 245 (506)
T PRK13549 244 ------------------------------------------L------------------------------------T 245 (506)
T ss_pred ------------------------------------------c------------------------------------c
Confidence 0 0
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcC-CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000702 1067 RIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGE-NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALF 1145 (1343)
Q Consensus 1067 Ri~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~-~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~ 1145 (1343)
+ . .+... ++ +....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.
T Consensus 246 ~---~--~~~~~--------~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 246 A---L--YPREP--------HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred c---c--ccccc--------cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHh
Confidence 0 0 00000 00 11125999999999953 2245999999999999999999999999999999999
Q ss_pred cccC-CCcceEEEcCeecCCCCh-HHHhhcceeecCCc---cccC-CchhhhcCCC--CC------CC----HHHHHHHH
Q 000702 1146 RLIE-PACGRIIIDNIDISTIGL-HDLRSRLGIIPQDP---NLFE-GTIRCNLDPL--EE------HS----DREIWEAL 1207 (1343)
Q Consensus 1146 rl~~-~~~G~I~IdG~di~~i~l-~~LR~~i~iVpQdp---~lF~-gTIr~NLdp~--~~------~s----d~ei~~aL 1207 (1343)
|+++ |++|+|.++|.|+...+. +..|++++|+||+| .+|. .|+.+|+... .. .+ .+++.+++
T Consensus 310 Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 389 (506)
T PRK13549 310 GAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESI 389 (506)
T ss_pred CCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHH
Confidence 9998 599999999999875543 34677899999997 3564 5999999631 11 11 13466777
Q ss_pred HHcCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEE
Q 000702 1208 DKSQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTV 1285 (1343)
Q Consensus 1208 ~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~Tv 1285 (1343)
+++++. +. .|.++ ..||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++||
T Consensus 390 ~~~~l~~~~-------~~~~~----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 390 QRLKVKTAS-------PELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred HhcCccCCC-------ccccc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEE
Confidence 777763 22 23333 4799999999999999999999999999999999999999999998753 47899
Q ss_pred EEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1286 CTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1286 I~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|+|||+++.+.. |||+++|++|+++..|+++++.
T Consensus 459 i~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 459 IVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred EEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 999999999876 9999999999999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=655.88 Aligned_cols=437 Identities=20% Similarity=0.313 Sum_probs=336.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 589999999884 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcccccccC-ccHHHHhccCCC-----C-----CHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSP-----M-----DKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~-----~-----~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
++|++|++.++. .|++||+.++.. + +.. +..++++.+++ .........+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHH
Confidence 899999987665 599999987632 0 111 11222222222 222345667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 660 (1343)
||||+|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999888876433333358999999999998864 9999999999999877765
Q ss_pred HHHhcCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHH
Q 000702 661 DLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKK 740 (1343)
Q Consensus 661 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1343)
++... +.. +
T Consensus 231 ~~~~~-----~~~---------------------------------------------------------------~--- 239 (510)
T PRK09700 231 DVSND-----DIV---------------------------------------------------------------R--- 239 (510)
T ss_pred hCCHH-----HHH---------------------------------------------------------------H---
Confidence 43110 000 0
Q ss_pred HhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHH
Q 000702 741 AKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLV 820 (1343)
Q Consensus 741 ~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 820 (1343)
...+. ..
T Consensus 240 --------------~~~~~------------------------------------------~~----------------- 246 (510)
T PRK09700 240 --------------LMVGR------------------------------------------EL----------------- 246 (510)
T ss_pred --------------HhcCC------------------------------------------Cc-----------------
Confidence 00000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHH
Q 000702 821 VYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFAST 900 (1343)
Q Consensus 821 ~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~ 900 (1343)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHH
Q 000702 901 TIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKR 980 (1343)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~ 980 (1343)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 981 NLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLEN 1060 (1343)
Q Consensus 981 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~ 1060 (1343)
.
T Consensus 247 ---------------------------------------------~---------------------------------- 247 (510)
T PRK09700 247 ---------------------------------------------Q---------------------------------- 247 (510)
T ss_pred ---------------------------------------------c----------------------------------
Confidence 0
Q ss_pred HhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHH
Q 000702 1061 KIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTL 1140 (1343)
Q Consensus 1061 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTL 1140 (1343)
.+ +....+... ++ +....|+++|+++.|. .+|+|+||+|++||++||+|+||||||||
T Consensus 248 -----~~---~~~~~~~~~-------~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTL 305 (510)
T PRK09700 248 -----NR---FNAMKENVS-------NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTEL 305 (510)
T ss_pred -----cc---ccccccccc-------cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHH
Confidence 00 000000000 00 0112599999999763 28999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEEcCeecCCCCh-HHHhhcceeecCCc---cccCC-chhhhcCCCCC------------CC----
Q 000702 1141 IQALFRLIEPACGRIIIDNIDISTIGL-HDLRSRLGIIPQDP---NLFEG-TIRCNLDPLEE------------HS---- 1199 (1343)
Q Consensus 1141 l~~L~rl~~~~~G~I~IdG~di~~i~l-~~LR~~i~iVpQdp---~lF~g-TIr~NLdp~~~------------~s---- 1199 (1343)
+++|.|+++|++|+|.++|.++...+. ..+|++++|+||++ .+|.+ |+++|+..... ..
T Consensus 306 lk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 385 (510)
T PRK09700 306 MNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE 385 (510)
T ss_pred HHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH
Confidence 999999999999999999999876543 45678899999984 57765 99999864211 01
Q ss_pred HHHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000702 1200 DREIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT 1278 (1343)
Q Consensus 1200 d~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~ 1278 (1343)
.+++.++++..++. +. .+.++ ..||||||||++|||||+++|+||||||||++||..+.+.+.+.|++
T Consensus 386 ~~~~~~~l~~~~l~~~~-------~~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 386 QRTAENQRELLALKCHS-------VNQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred HHHHHHHHHhcCCCCCC-------ccCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 12356777777763 22 33444 46999999999999999999999999999999999999999999987
Q ss_pred hc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1279 EF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1279 ~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
.. ++.|||+|||+++.+.. ||||++|++|++++.+++.+
T Consensus 455 l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 455 LADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 53 47899999999998765 99999999999999987733
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=654.68 Aligned_cols=219 Identities=25% Similarity=0.422 Sum_probs=179.9
Q ss_pred eEEEEEEEEEEcC---CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEc-Ce---ecCCCC--
Q 000702 1096 TIELIDLKVRYGE---NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID-NI---DISTIG-- 1166 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~---~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~Id-G~---di~~i~-- 1166 (1343)
.|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 23469999999999999999999999999999999999999999999996 64 344333
Q ss_pred -hHHHhhcceeecCCccccCC-chhhhcCC-CC-CC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1167 -LHDLRSRLGIIPQDPNLFEG-TIRCNLDP-LE-EH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1167 -l~~LR~~i~iVpQdp~lF~g-TIr~NLdp-~~-~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
...+|++++|+||++.+|.. |+++|+.. .. .. .++++.++++.+++.+.- .++-++.++ ..|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHH
Confidence 23467789999999988875 99999952 11 11 123566788888875310 000123333 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecCh
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p 1315 (1343)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 6899999999999876 999999999999999999
Q ss_pred hHHhh
Q 000702 1316 GRLLE 1320 (1343)
Q Consensus 1316 ~eLl~ 1320 (1343)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 98864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=631.91 Aligned_cols=511 Identities=22% Similarity=0.260 Sum_probs=402.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 133 FWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLG-GKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSAL 211 (1343)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 211 (1343)
||+.++..+++.++..++..+.|+++++++|.+. .... ....+.+++++++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888889999999999999999999773 3221 1122233334444555566666666677788999999999
Q ss_pred HHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 212 TAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIV 290 (1343)
Q Consensus 212 ~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~~~~~~ 290 (1343)
+..+|+|.++++...+++.++|++++++++|++.+++++. .+..++...+.+++++++++...++.+++.++.+++...
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988654 455555555555555554444333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-
Q 000702 291 VTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWS-S- 368 (1343)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~-~- 368 (1343)
+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777878888888999999999999999999999999999888877665443332222222211111111111 1
Q ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCC
Q 000702 369 PIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMT 448 (1343)
Q Consensus 369 ~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~ 448 (1343)
...+.++.++.+.+..+.+|+|.+++++.+...+..|+..+...+..+.+++++++|+.++++.++...+.. ..+ ...
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~-~~~ 317 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT-AAP 317 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC-CCC
Confidence 111122234555556888999999999999999999999999999999999999999999997543222111 111 111
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------ 516 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 516 (1343)
...|+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 318 ~~~i~~~~v~f~y~~-~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPG-RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCC-CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 236999999999864 3458999999999999999999999999999999999999999999999983
Q ss_pred -EEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 517 -AAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 517 -i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
++||+|+|++|++||+|||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999865 678899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEE
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVL 648 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l 648 (1343)
|+++|||||||+||+++++.+++. +....+++|+|+||||++.+..||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999998765 45556799999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-67 Score=647.75 Aligned_cols=436 Identities=20% Similarity=0.327 Sum_probs=335.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999999884 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEccccccc-CccHHHHhccCCCC-------CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSPM-------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 517 i~~v~Q~~~l~-~~ti~~Ni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
++|++|++.++ ..|++||+.++... +....++.++ +-++.+ |..........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD-----KLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHH-----HHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 79999998765 46999999987431 2211111111 112222 222223456678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGT 667 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 667 (1343)
|||..+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999888765433322358899999999998865 999999999999876653221000
Q ss_pred cHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhh
Q 000702 668 DFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKK 747 (1343)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1343)
...
T Consensus 232 ------------------------------------------------------------------~~~----------- 234 (501)
T PRK10762 232 ------------------------------------------------------------------SLI----------- 234 (501)
T ss_pred ------------------------------------------------------------------HHH-----------
Confidence 000
Q ss_pred hhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHH
Q 000702 748 QLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAF 827 (1343)
Q Consensus 748 ~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~ 827 (1343)
+ . + +..
T Consensus 235 -----~-~------------~---------------------------------~~~----------------------- 240 (501)
T PRK10762 235 -----E-M------------M---------------------------------VGR----------------------- 240 (501)
T ss_pred -----H-H------------h---------------------------------cCC-----------------------
Confidence 0 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 000702 828 GSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGI 907 (1343)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~ 907 (1343)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHh
Q 000702 908 IGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDC 987 (1343)
Q Consensus 908 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~ 987 (1343)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000702 988 FARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIER 1067 (1343)
Q Consensus 988 ~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eR 1067 (1343)
+
T Consensus 241 -------------------------------------------------------------------------------~ 241 (501)
T PRK10762 241 -------------------------------------------------------------------------------K 241 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000702 1068 IYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1068 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl 1147 (1343)
.. ..++..+ .+ |..-.|+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus 242 ~~---~~~~~~~-------~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 242 LE---DQYPRLD-------KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred cc---ccccccc-------cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 00 0000000 00 1112589999984 379999999999999999999999999999999999
Q ss_pred cCCCcceEEEcCeecCCCChH-HHhhcceeecCCc---cccC-CchhhhcCCCC-----C----CC----HHHHHHHHHH
Q 000702 1148 IEPACGRIIIDNIDISTIGLH-DLRSRLGIIPQDP---NLFE-GTIRCNLDPLE-----E----HS----DREIWEALDK 1209 (1343)
Q Consensus 1148 ~~~~~G~I~IdG~di~~i~l~-~LR~~i~iVpQdp---~lF~-gTIr~NLdp~~-----~----~s----d~ei~~aL~~ 1209 (1343)
++|++|+|.+||.++...+.. .+|++++||||+| .+|. .|+++|+.... . .+ ++++.++++.
T Consensus 302 ~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (501)
T PRK10762 302 LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381 (501)
T ss_pred CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHh
Confidence 999999999999999876653 4678899999997 3554 59999996311 0 11 2346677777
Q ss_pred cCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 000702 1210 SQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCT 1287 (1343)
Q Consensus 1210 ~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~ 1287 (1343)
+++. +. .+.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+
T Consensus 382 ~~l~~~~-------~~~~~----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 450 (501)
T PRK10762 382 FNIKTPS-------MEQAI----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450 (501)
T ss_pred cCCCCCC-------ccCch----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEE
Confidence 7763 22 23333 4799999999999999999999999999999999999999999999864 4789999
Q ss_pred eccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1288 IAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1288 IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 451 vtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 451 VSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9999999866 9999999999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=645.14 Aligned_cols=447 Identities=23% Similarity=0.359 Sum_probs=342.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|++++|. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 589999999984 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcccccccC-ccHHHHhccCCCCCH---HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSPMDK---AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~~~~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
++|++|++.++. .|++||+.++..... ++..++++..++. ........+|||||||||+|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHH
Confidence 799999987665 699999998754221 2333334433332 2234566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCccHHH
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 671 (1343)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~----- 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD----- 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----
Confidence 9999999999999999999888876543333358999999999998764 9999999999999988876653210
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhhhhhH
Q 000702 672 LVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQ 751 (1343)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1343)
.... ..
T Consensus 232 ~~~~-------~~------------------------------------------------------------------- 237 (510)
T PRK15439 232 IIQA-------IT------------------------------------------------------------------- 237 (510)
T ss_pred HHHH-------Hh-------------------------------------------------------------------
Confidence 0000 00
Q ss_pred HHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 000702 752 EEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSW 831 (1343)
Q Consensus 752 ~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~ 831 (1343)
+.. .... . ..
T Consensus 238 ------~~~----------------------------------------~~~~----~-~~------------------- 247 (510)
T PRK15439 238 ------PAA----------------------------------------REKS----L-SA------------------- 247 (510)
T ss_pred ------Ccc----------------------------------------cccc----c-cc-------------------
Confidence 000 0000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 000702 832 FIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVM 911 (1343)
Q Consensus 832 ~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~ 911 (1343)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhh
Q 000702 912 TMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP 991 (1343)
Q Consensus 912 ~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~ 991 (1343)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 000702 992 FFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQY 1071 (1343)
Q Consensus 992 ~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~ 1071 (1343)
.++. .
T Consensus 248 -------------------------------------------------------------------------~~~~-~- 252 (510)
T PRK15439 248 -------------------------------------------------------------------------SQKL-W- 252 (510)
T ss_pred -------------------------------------------------------------------------cccc-c-
Confidence 0000 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC
Q 000702 1072 SQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA 1151 (1343)
Q Consensus 1072 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~ 1151 (1343)
...|...+ ..+ +..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|+
T Consensus 253 ~~~~~~~~------~~~---~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~ 316 (510)
T PRK15439 253 LELPGNRR------QQA---AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR 316 (510)
T ss_pred cccccccc------ccC---CCCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 00000000 000 1112489999983 2699999999999999999999999999999999999999
Q ss_pred cceEEEcCeecCCCChHH-HhhcceeecCCc---cccCC-chhhhcCCC-----C---CC--CHHHHHHHHHHcCCchHH
Q 000702 1152 CGRIIIDNIDISTIGLHD-LRSRLGIIPQDP---NLFEG-TIRCNLDPL-----E---EH--SDREIWEALDKSQLGDIV 1216 (1343)
Q Consensus 1152 ~G~I~IdG~di~~i~l~~-LR~~i~iVpQdp---~lF~g-TIr~NLdp~-----~---~~--sd~ei~~aL~~~~L~~~i 1216 (1343)
+|+|.++|.++...+... +|++|+|+||++ .+|.. |+++|+... . .. .++++.++|+..++..
T Consensus 317 ~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 394 (510)
T PRK15439 317 GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-- 394 (510)
T ss_pred CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC--
Confidence 999999999998776654 467899999996 36654 999998421 0 11 1123556677776631
Q ss_pred hcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccc
Q 000702 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTV 1295 (1343)
Q Consensus 1217 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti 1295 (1343)
...+.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+
T Consensus 395 ----~~~~~~~----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i 466 (510)
T PRK15439 395 ----NHAEQAA----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI 466 (510)
T ss_pred ----CCccCcc----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 1234444 4799999999999999999999999999999999999999999998754 378999999999999
Q ss_pred cc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1296 ID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1296 ~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
.+ ||||++|++|+++..|+++++.++
T Consensus 467 ~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 467 EQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHhCCEEEEEECCEEEEEEccccCCHH
Confidence 76 999999999999999999887643
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=686.89 Aligned_cols=251 Identities=19% Similarity=0.262 Sum_probs=202.2
Q ss_pred HHHHHHHHHhhhHHHHHHhh--cCCCCCCCCCCCCCCCCCCCCCc--eEEEEEEEEEEc--CCCCcccccceeEecCCCE
Q 000702 1053 LSFCKLENKIISIERIYQYS--QIPGEAPPVIEDSRPPSSWPENG--TIELIDLKVRYG--ENLPLVLHGITCAFPGGKK 1126 (1343)
Q Consensus 1053 ~~~~~~e~~~~s~eRi~~~~--~~~~e~~~~~~~~~~~~~wp~~g--~I~f~nvs~~Y~--~~~~~vL~~is~~I~~Gek 1126 (1343)
+...+.|..+.++||..++. +.+.|.+.......+|. ..| .++++||+++|+ ++.+++|+|||++|+|||+
T Consensus 715 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~ 791 (1394)
T TIGR00956 715 KAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTL 791 (1394)
T ss_pred hcccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEE
Confidence 33345677788899998763 33333322111111111 133 479999999995 3345799999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC---CCcceEEEcCeecCCCChHHHhhcceeecCCccc-cCCchhhhcCCC------C
Q 000702 1127 IGIVGRTGSGKSTLIQALFRLIE---PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL-FEGTIRCNLDPL------E 1196 (1343)
Q Consensus 1127 vgIVGrTGsGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~l-F~gTIr~NLdp~------~ 1196 (1343)
+||+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++.+ +..|+||||+.. .
T Consensus 792 ~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999997 78899999999985 3578999999998764 567999999731 1
Q ss_pred CCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHH
Q 000702 1197 EHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR-ILVLDEATASVDTATDNL 1271 (1343)
Q Consensus 1197 ~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~-ILlLDEaTs~lD~~te~~ 1271 (1343)
+.+++ .+.++++..+|.+ -.|+.+++.|.+||||||||++|||||+.+|+ ||+||||||+||..+...
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~ 940 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Confidence 23443 3567788887754 36888998888999999999999999999997 999999999999999999
Q ss_pred HHHHHHHh-cCCcEEEEeccCcccc--cccCEEEEEeCC-EEeeecChhH
Q 000702 1272 IQKIIRTE-FKDCTVCTIAHRIPTV--IDSDLVLVLSDG-RVAEFDTPGR 1317 (1343)
Q Consensus 1272 I~~~l~~~-~~~~TvI~IaHrl~ti--~~~DrIlvl~~G-~ive~g~p~e 1317 (1343)
|++.|++. .+++|||+++|+++.. ..||||++|++| +++++|++.+
T Consensus 941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999986 4689999999999974 569999999997 9999999754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-66 Score=641.12 Aligned_cols=201 Identities=18% Similarity=0.321 Sum_probs=173.9
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999974 3599999999999999999999999999999999999999999999998 3579
Q ss_pred eeecCCcc--ccC-CchhhhcCCCC--CCCHHHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1175 GIIPQDPN--LFE-GTIRCNLDPLE--EHSDREIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1175 ~iVpQdp~--lF~-gTIr~NLdp~~--~~sd~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+|+||++. ++. .|+++|+..+. ...++++.++|+..++. +.. +.++ .+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------KKSV----KVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------cCcc----cccCHHHHHHHHHHHHH
Confidence 99999984 443 59999986432 23355688889998884 332 2222 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEe-eecChhHHhhc
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVA-EFDTPGRLLED 1321 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~iv-e~g~p~eLl~~ 1321 (1343)
+++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||||++|++|+++ ..|++.++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999875 4699999999999876 9999999999998 77999988754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=573.17 Aligned_cols=544 Identities=22% Similarity=0.297 Sum_probs=413.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 124 SLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKET-FPHEGYILAGIFFSAKLVETITTRQWYLGVDI 202 (1343)
Q Consensus 124 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (1343)
++++.+++ .|+.+++++++.++..+....-=.+-+++|..-.-... .....++-+++.=...+..++..+.-...+..
T Consensus 6 p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~ 84 (573)
T COG4987 6 PYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHD 84 (573)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34555555 77788888777777666665555555666643211000 00112222333333445555555555566677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 000702 203 LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQII--LALAILYKNVGIASVA 280 (1343)
Q Consensus 203 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~--~~~~~l~~~~g~~~l~ 280 (1343)
...++-+.||..+|+|....++.-....++||+.|++..||+.+++.+......+...+-++ +.+.+-+..++.+.++
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 78899999999999999999999889999999999999999999998766655554443332 2333336777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 281 TLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF 360 (1343)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 360 (1343)
++...++.+.++..+.++.++..++..+.+....+.+.|.+.|+...+++|.++.+.+.++..-+.-.+..++.......
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~ 244 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGL 244 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999888776544333333333333322
Q ss_pred HHHHHHHH-HHHHH-HHHHHHHHHhCCCcC-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccccc
Q 000702 361 ITFIFWSS-PIFVA-AVTFGTSILLGAQLT-AGSVLSAMATFRILQEPLRNF-PDLVSMMAQTKVSLDRISGFLQEEELQ 436 (1343)
Q Consensus 361 ~~~~~~~~-~~~~~-~~~f~~~~~~~~~lt-~~~~f~~l~l~~~l~~pl~~l-~~~~~~~~~a~~s~~Ri~~fl~~~e~~ 436 (1343)
..++.... ...++ .+.+.+...-.|..+ +..+...+..|..+ .++..+ |.++..+.+...|.+|+.+.++.+++.
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 22222111 11111 111122212223444 23333333323332 333333 378889999999999999999887654
Q ss_pred cccccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-
Q 000702 437 EDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG- 515 (1343)
Q Consensus 437 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g- 515 (1343)
....+..+.. +..++++|++|+|+. ++.++|+|+||++++||++||+|+||||||||+++|.|-++|++|+|..+|
T Consensus 324 ~~~~~~~~~~--~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~ 400 (573)
T COG4987 324 TFPDEQTATT--GQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400 (573)
T ss_pred CCCccccCCc--cceeeeccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc
Confidence 3321111111 126999999999864 456899999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 ------------TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 ------------~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.+++++|.+.+|++|+|||+.+++| .++++..++++..+|++.++..|+|++|.+||.|..||||||
T Consensus 401 ~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~ 480 (573)
T COG4987 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480 (573)
T ss_pred ChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHH
Confidence 3789999999999999999999988 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 662 (1343)
||++|||++++|++++||||||.+||+.|++++++.+. ...+|||+|+||||+..++.||+|++|++|+++++|+|.++
T Consensus 481 rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhh
Confidence 99999999999999999999999999999999987644 45679999999999999999999999999999999999999
Q ss_pred HhcCccHHHHH
Q 000702 663 LQAGTDFNALV 673 (1343)
Q Consensus 663 ~~~~~~~~~~~ 673 (1343)
+.+++.|.++.
T Consensus 560 l~~~g~~~~l~ 570 (573)
T COG4987 560 LANNGRYKRLY 570 (573)
T ss_pred hccccHHHHHh
Confidence 99888887764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=642.86 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=176.2
Q ss_pred eEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CcceEEEcCeecCCCCh-HHHhh
Q 000702 1096 TIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-ACGRIIIDNIDISTIGL-HDLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-~~G~I~IdG~di~~i~l-~~LR~ 1172 (1343)
.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999432 23599999999999999999999999999999999999995 89999999999875443 46788
Q ss_pred cceeecCCc---cccC-CchhhhcCCCC-----C---CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCCh
Q 000702 1173 RLGIIPQDP---NLFE-GTIRCNLDPLE-----E---HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1173 ~i~iVpQdp---~lF~-gTIr~NLdp~~-----~---~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
+++++||++ .+|. .|+++|+.... . .. .+++.+++++.++.+. -.|.++ ..|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFLPI----GRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccCcc----ccCCH
Confidence 999999997 3665 59999997421 1 11 1346677777776321 123444 46999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecC
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~ 1314 (1343)
|||||++|||||+++|++|||||||++||+.+.+.+++.|++.. ++.|||+|||+++.+.. ||||++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999888753 47899999999999876 99999999999998776
Q ss_pred hhHH
Q 000702 1315 PGRL 1318 (1343)
Q Consensus 1315 p~eL 1318 (1343)
.+++
T Consensus 487 ~~~~ 490 (500)
T TIGR02633 487 NHAL 490 (500)
T ss_pred cccC
Confidence 5544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=642.04 Aligned_cols=435 Identities=22% Similarity=0.317 Sum_probs=334.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|++++|. ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 589999999984 35799999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcccccccC-ccHHHHhccCCC------CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSP------MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
++|++|++.++. .|++||+.++.. .+.. +..++++.+++ .........+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV-----------DIDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC-----------CCCcCCchhhCCHHHHHHH
Confidence 899999988765 599999998642 1221 22223333322 1223456678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+++..++..+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~--- 226 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA--- 226 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc---
Confidence 99999999999999999999999999888876543333358999999999998765 99999999999985432100
Q ss_pred cCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhh
Q 000702 665 AGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRS 744 (1343)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1343)
. . . .
T Consensus 227 -------------------------------~---------~----------~--------------~------------ 230 (501)
T PRK11288 227 -------------------------------Q---------V----------D--------------R------------ 230 (501)
T ss_pred -------------------------------c---------C----------C--------------H------------
Confidence 0 0 0 0
Q ss_pred hhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHH
Q 000702 745 RKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMA 824 (1343)
Q Consensus 745 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~ 824 (1343)
++ +.... .. .
T Consensus 231 --------~~-------------~~~~~------------------------------~~----~--------------- 240 (501)
T PRK11288 231 --------DQ-------------LVQAM------------------------------VG----R--------------- 240 (501)
T ss_pred --------HH-------------HHHHh------------------------------cC----C---------------
Confidence 00 00000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHH
Q 000702 825 LAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL 904 (1343)
Q Consensus 825 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~ 904 (1343)
+
T Consensus 241 --------------------------------------~----------------------------------------- 241 (501)
T PRK11288 241 --------------------------------------E----------------------------------------- 241 (501)
T ss_pred --------------------------------------C-----------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHH
Q 000702 905 VGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYL 984 (1343)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~ 984 (1343)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000702 985 LDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIIS 1064 (1343)
Q Consensus 985 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s 1064 (1343)
.
T Consensus 242 --------------------------------------------~----------------------------------- 242 (501)
T PRK11288 242 --------------------------------------------I----------------------------------- 242 (501)
T ss_pred --------------------------------------------c-----------------------------------
Confidence 0
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHH
Q 000702 1065 IERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL 1144 (1343)
Q Consensus 1065 ~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L 1144 (1343)
++. .+.++. + +....++++|+++. .+++|+||+|++||++||+|+||||||||+++|
T Consensus 243 -~~~-----~~~~~~-------~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l 299 (501)
T PRK11288 243 -GDI-----YGYRPR-------P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLL 299 (501)
T ss_pred -ccc-----cccccc-------C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Confidence 000 000000 0 01125899999842 389999999999999999999999999999999
Q ss_pred hcccCCCcceEEEcCeecCCCCh-HHHhhcceeecCCcc---ccC-CchhhhcCCCC--C-------CC----HHHHHHH
Q 000702 1145 FRLIEPACGRIIIDNIDISTIGL-HDLRSRLGIIPQDPN---LFE-GTIRCNLDPLE--E-------HS----DREIWEA 1206 (1343)
Q Consensus 1145 ~rl~~~~~G~I~IdG~di~~i~l-~~LR~~i~iVpQdp~---lF~-gTIr~NLdp~~--~-------~s----d~ei~~a 1206 (1343)
.|+++|++|+|.+||.++...+. +.+|++++|+||+|. +|. .|+.+|+.... . .. ++++.+.
T Consensus 300 ~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
T PRK11288 300 YGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRF 379 (501)
T ss_pred cCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHH
Confidence 99999999999999999875443 456789999999983 554 79999986321 0 01 1346677
Q ss_pred HHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEE
Q 000702 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTV 1285 (1343)
Q Consensus 1207 L~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~Tv 1285 (1343)
++..++.+ +-.++++ .+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.||
T Consensus 380 l~~~~l~~------~~~~~~~----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 449 (501)
T PRK11288 380 IRSLNIKT------PSREQLI----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449 (501)
T ss_pred HHhcCccc------CCccCcc----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEE
Confidence 77777621 1134444 4799999999999999999999999999999999999999999998754 37899
Q ss_pred EEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1286 CTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1286 I~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|+|||+++.+.. ||||++|++|++++.|++++..
T Consensus 450 iivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 450 LFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999865 9999999999999999998765
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=574.86 Aligned_cols=530 Identities=23% Similarity=0.321 Sum_probs=417.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 138 ALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFP---HEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAM 214 (1343)
Q Consensus 138 ~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 214 (1343)
+.+.++.+..-.+....|++++.++|.+...+..+ ......+.+++++.+..+++.-...+....+..++-......
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444456788889999999999886322212 112233444555555555555444455566777777888889
Q ss_pred HHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000702 215 VYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASV-ATLIATIISIVVT 292 (1343)
Q Consensus 215 i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l-~~~~~~~~~~~~~ 292 (1343)
+|++.+.++.+.+.+..+|++.+.|..-...+.++.. .+..+....+++.+....+++..|.+.. +.++.+..+..+.
T Consensus 113 vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T 192 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT 192 (591)
T ss_pred HHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE
Confidence 9999999999999999999999999999988988764 5566677778888888889999996543 3344555566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000702 293 VPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEM-RGVEFRWLRKALYSQAFITFIF---WSS 368 (1343)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~-r~~e~~~~~~~~~~~~~~~~~~---~~~ 368 (1343)
+.+..+..+++++.+++.++-.+..-+.|.|...||.|+-|+.-.++.... ++.|-...+....+. +.++.. +++
T Consensus 193 i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~-~lnfgQ~~iFsv 271 (591)
T KOG0057|consen 193 IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLA-FLNFGQKAIFSV 271 (591)
T ss_pred EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHH-HHHHHHHHHHHH
Confidence 777888889999999999999999999999999999999998777666543 333322222222222 111111 111
Q ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCC
Q 000702 369 PIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMT 448 (1343)
Q Consensus 369 ~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~ 448 (1343)
.++.++..+..-+.++.+|.+.+....+++..|..|+..+...+..+.++..-+.-+....+.++..... ..+....
T Consensus 272 -~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~ 348 (591)
T KOG0057|consen 272 -ALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELF 348 (591)
T ss_pred -HHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccC
Confidence 1222233344445577899999999999999999999999999999999888777665544433322211 1121223
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
+..|+|+|++|+|.+ ++++|+++||+|++||++||||+|||||||++++|+++++ .+|+|.+||
T Consensus 349 ~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred CCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhh
Confidence 346999999999864 4679999999999999999999999999999999999999 999999999
Q ss_pred eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 516 TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
.|||||||..|||+||.+||.+|++ ..+++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+++|
T Consensus 426 ~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 426 SIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred heeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 3899999999999999999999998 456677777778899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHH
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 674 (1343)
|+|+++|||||+||.++++.+++.. .....+||+|+|.||++.+++||+|++++||++.+.|+|+|+++.++.|.+++.
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i-~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMI-MDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHH-HHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 9999999999999999999999764 457789999999999999999999999999999999999999997777777764
Q ss_pred H
Q 000702 675 A 675 (1343)
Q Consensus 675 ~ 675 (1343)
.
T Consensus 585 ~ 585 (591)
T KOG0057|consen 585 T 585 (591)
T ss_pred c
Confidence 3
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=675.36 Aligned_cols=549 Identities=17% Similarity=0.176 Sum_probs=409.7
Q ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 123 PSLALAILKSFWKEA-ALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVD 201 (1343)
Q Consensus 123 ~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (1343)
.+.++.+++..++.. ++.+++.++..++....|+.++...+.-..........+.+ .++++..++..++.....+...
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~iy~~l~i~~~~~~~~~~~~~~ 1030 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFAVFGYSMAVS 1030 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666776654332 23334445556667778888877665321110011111111 1222222222222222233345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 202 ILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVA 280 (1343)
Q Consensus 202 ~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~ 280 (1343)
..+.+.-..++..+|+++++.+..++++.++|+++|++++|++.+++.+. .+..+...++.++.++++++....+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888999999999999999999999999999999999999988654 45566666666666666555444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 281 TLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAF 360 (1343)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 360 (1343)
.+.++++++.+..++.+..++.++.....++...+.+.|.++|+++||.|++|+.|.++..+..+...+...........
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555556656667777889999999999999999999999888776655444332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-
Q 000702 361 ITFIFWSSPIFVAAVTFGTSILL-GAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQED- 438 (1343)
Q Consensus 361 ~~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~- 438 (1343)
..........+ .++..+.+.+. .+.+++|.+.+++.+...+..|+..+...+..+..+.+|.+|+.++++.+++.+.
T Consensus 1191 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1191 LAVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 11111111111 11222333333 5779999999999999999999999999999999999999999999976644321
Q ss_pred -cccccCC-CCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-
Q 000702 439 -ATIVLPR-GMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG- 515 (1343)
Q Consensus 439 -~~~~~~~-~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g- 515 (1343)
.....+. -+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 0111111 1234579999999999653 35799999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 516 ------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 516 ------------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
+++||||+|.+|+|||||||....++++++..++++.|++++.+..+|+|++|.+||+|.+|||||||
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 38999999999999999999843468889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|++||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|+||++|+|++.|+|+||+
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999997766 55677777899999999999999999999999999999999999999
Q ss_pred hcCccHHHHHHH
Q 000702 664 QAGTDFNALVSA 675 (1343)
Q Consensus 664 ~~~~~~~~~~~~ 675 (1343)
++++.|.++++.
T Consensus 1508 ~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1508 QQRGIFYSMAKD 1519 (1522)
T ss_pred hCCCHHHHHHHH
Confidence 888888887654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=632.89 Aligned_cols=436 Identities=22% Similarity=0.342 Sum_probs=329.9
Q ss_pred EeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------eEEEE
Q 000702 455 ENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------TAAYV 520 (1343)
Q Consensus 455 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i~~v 520 (1343)
+|++++|. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 67888874 35799999999999999999999999999999999999999999999987 27999
Q ss_pred ccccccc-CccHHHHhccCCC------CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 000702 521 SQSAWIQ-SGNIEENILFGSP------MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593 (1343)
Q Consensus 521 ~Q~~~l~-~~ti~~Ni~~g~~------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~ 593 (1343)
+|++.++ +.|++||+.++.. .+..+..+.+ .+-++.+ |..........+|||||||||+||||++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHH-----HHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 9998765 5799999998642 1221111111 1112222 22333456678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCccHHHH
Q 000702 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNAL 672 (1343)
Q Consensus 594 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 672 (1343)
+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------- 224 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------- 224 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-------
Confidence 999999999999999999888876433323358999999999998764 999999999999987664331000
Q ss_pred HHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhhhhhHH
Q 000702 673 VSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQE 752 (1343)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1343)
...+
T Consensus 225 -------------------------------------------------------------~~~~--------------- 228 (491)
T PRK10982 225 -------------------------------------------------------------KIIA--------------- 228 (491)
T ss_pred -------------------------------------------------------------HHHH---------------
Confidence 0000
Q ss_pred HHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 000702 753 EERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWF 832 (1343)
Q Consensus 753 e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~ 832 (1343)
...|.
T Consensus 229 --~~~~~------------------------------------------------------------------------- 233 (491)
T PRK10982 229 --MMVGR------------------------------------------------------------------------- 233 (491)
T ss_pred --HHhCC-------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 000702 833 IFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMT 912 (1343)
Q Consensus 833 ~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~ 912 (1343)
T Consensus 234 -------------------------------------------------------------------------------- 233 (491)
T PRK10982 234 -------------------------------------------------------------------------------- 233 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhH
Q 000702 913 MVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPF 992 (1343)
Q Consensus 913 ~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~ 992 (1343)
T Consensus 234 -------------------------------------------------------------------------------- 233 (491)
T PRK10982 234 -------------------------------------------------------------------------------- 233 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 000702 993 FCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYS 1072 (1343)
Q Consensus 993 ~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~ 1072 (1343)
.. .+
T Consensus 234 -----------------------------------~~------------------------------------~~----- 237 (491)
T PRK10982 234 -----------------------------------SL------------------------------------TQ----- 237 (491)
T ss_pred -----------------------------------Cc------------------------------------cc-----
Confidence 00 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCc
Q 000702 1073 QIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152 (1343)
Q Consensus 1073 ~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~ 1152 (1343)
..+.+. .+ +....|+++|++++| .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++
T Consensus 238 ~~~~~~-------~~----~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 302 (491)
T PRK10982 238 RFPDKE-------NK----PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA 302 (491)
T ss_pred cccccc-------CC----CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc
Confidence 000000 00 112259999999975 249999999999999999999999999999999999999999
Q ss_pred ceEEEcCeecCCCChH-HHhhcceeecCCcc---ccC-Cchhhh-----cCCC----CCCC----HHHHHHHHHHcCCch
Q 000702 1153 GRIIIDNIDISTIGLH-DLRSRLGIIPQDPN---LFE-GTIRCN-----LDPL----EEHS----DREIWEALDKSQLGD 1214 (1343)
Q Consensus 1153 G~I~IdG~di~~i~l~-~LR~~i~iVpQdp~---lF~-gTIr~N-----Ldp~----~~~s----d~ei~~aL~~~~L~~ 1214 (1343)
|+|.+||.+++..+.. .+|+.++|+||++. +|. .|+++| +... ...+ ++++.+.++..++.+
T Consensus 303 G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 382 (491)
T PRK10982 303 GTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT 382 (491)
T ss_pred cEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC
Confidence 9999999999877654 35778999999963 555 366655 3211 1011 223455666665531
Q ss_pred HHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcc
Q 000702 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIP 1293 (1343)
Q Consensus 1215 ~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ 1293 (1343)
+.+|.++ .+||||||||++||||++++|+||||||||++||+.+...+.+.|++.. ++.|||+|||+++
T Consensus 383 ------~~~~~~~----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 383 ------PGHRTQI----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred ------CCccccc----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 1134444 5799999999999999999999999999999999999999999997753 4789999999999
Q ss_pred cccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1294 TVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1294 ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
.+.. ||||++|++|+++..++++++.
T Consensus 453 ~~~~~~d~v~~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 453 ELLGITDRILVMSNGLVAGIVDTKTTT 479 (491)
T ss_pred HHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9865 9999999999999888775443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=632.38 Aligned_cols=439 Identities=22% Similarity=0.326 Sum_probs=333.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------A 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 517 (1343)
.++++|++++|. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLS---DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcC---CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 488999999984 246999999999999999999999999999999999999999999998652 6
Q ss_pred EEEcccccc---------cCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSAWI---------QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~~l---------~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|++.. +..|+++|+.++.. ++++.+++++..++.+ .......+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITA-----------LLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHh-----------hhhCCcccCCHHHHHHHHHH
Confidence 899998643 24689999876532 2334455555554432 23356678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGT 667 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 667 (1343)
||++.+|++|||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999888876543323358999999999998765 99999999999999888766532100
Q ss_pred cHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhhh
Q 000702 668 DFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKK 747 (1343)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1343)
... . . .
T Consensus 228 -~~~-----------~----------------------~----------------------------------~------ 233 (490)
T PRK10938 228 -VAQ-----------L----------------------A----------------------------------H------ 233 (490)
T ss_pred -hhh-----------h----------------------h----------------------------------h------
Confidence 000 0 0 0
Q ss_pred hhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHHH
Q 000702 748 QLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAF 827 (1343)
Q Consensus 748 ~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~ 827 (1343)
.+ . +... ..+
T Consensus 234 ----~~-~----------------------------------------------~~~~---~~~---------------- 243 (490)
T PRK10938 234 ----SE-Q----------------------------------------------LEGV---QLP---------------- 243 (490)
T ss_pred ----hh-c----------------------------------------------cCcc---ccC----------------
Confidence 00 0 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 000702 828 GSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGI 907 (1343)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~ 907 (1343)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHh
Q 000702 908 IGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDC 987 (1343)
Q Consensus 908 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~ 987 (1343)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000702 988 FARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIER 1067 (1343)
Q Consensus 988 ~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eR 1067 (1343)
+
T Consensus 244 -------------------------------------------------------------------------------~ 244 (490)
T PRK10938 244 -------------------------------------------------------------------------------E 244 (490)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000702 1068 IYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1068 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl 1147 (1343)
..+... .. ..+ .....|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus 245 -------~~~~~~--~~-~~~---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 245 -------PDEPSA--RH-ALP---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred -------cccccc--cc-ccC---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 000000 00 000 01225999999999974 3599999999999999999999999999999999998
Q ss_pred cCC-CcceEEEcCeecCC-CChHHHhhcceeecCCccccC---CchhhhcCCC--C------CCC---HHHHHHHHHHcC
Q 000702 1148 IEP-ACGRIIIDNIDIST-IGLHDLRSRLGIIPQDPNLFE---GTIRCNLDPL--E------EHS---DREIWEALDKSQ 1211 (1343)
Q Consensus 1148 ~~~-~~G~I~IdG~di~~-i~l~~LR~~i~iVpQdp~lF~---gTIr~NLdp~--~------~~s---d~ei~~aL~~~~ 1211 (1343)
.++ ++|+|.++|.++.. ......|++++++||++.++. .|+++++... . ... ++++.++++..+
T Consensus 310 ~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (490)
T PRK10938 310 HPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILG 389 (490)
T ss_pred CCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcC
Confidence 875 69999999987642 233456889999999987642 4677775321 1 111 235678888888
Q ss_pred Cch-HHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEe
Q 000702 1212 LGD-IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-D-CTVCTI 1288 (1343)
Q Consensus 1212 L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~-~TvI~I 1288 (1343)
+.+ .. +.++ ..||||||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ + +|||+|
T Consensus 390 l~~~~~-------~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 390 IDKRTA-------DAPF----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458 (490)
T ss_pred Cchhhc-------cCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 764 32 2233 47999999999999999999999999999999999999999999998643 3 479999
Q ss_pred ccCcccccc--cCEEEEEeCCEEeeec
Q 000702 1289 AHRIPTVID--SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1289 aHrl~ti~~--~DrIlvl~~G~ive~g 1313 (1343)
||+++.+.. ||||++|++|++++.-
T Consensus 459 sHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 459 SHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred ecchhhhhhhhheeEEEecCCceEEee
Confidence 999999974 7999999999998764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=653.00 Aligned_cols=216 Identities=18% Similarity=0.220 Sum_probs=188.4
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhc
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~ 1173 (1343)
...|+++|++++|+....++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+ +....|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997543569999999999999999999999999999999999999999999999999975 45677889
Q ss_pred ceeecCCccccCC-chhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPL---EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
|||+||++.++.. |++|||..+ ...+. +.+.++++.++|.++..+.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998865 999999632 11222 33556788899877654332 46899999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998853 57999999999999876 999999999999999999999754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-64 Score=626.57 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=168.8
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 469999999999653 599999999999999999999999999999999999999999999954 2 159
Q ss_pred eeecCCc-cccC-CchhhhcCCCCC-----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1175 GIIPQDP-NLFE-GTIRCNLDPLEE-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1175 ~iVpQdp-~lF~-gTIr~NLdp~~~-----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
+|+||++ .++. -|+++|+..... ..+.+..++++..++.+.. ++..+ ..||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD------QQKKV----GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999997 5665 499999863211 1234456677877774211 22333 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeC-CEEee-ecChhHHhhcC
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSD-GRVAE-FDTPGRLLEDK 1322 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~-G~ive-~g~p~eLl~~~ 1322 (1343)
++.+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||||++|++ |++.+ .|+++++++++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999875 4 489999999998876 999999996 88874 67888887653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-65 Score=557.88 Aligned_cols=457 Identities=26% Similarity=0.431 Sum_probs=350.8
Q ss_pred eEEEEeeEEEecC-CCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC---------
Q 000702 451 AIQIENAEFCWYP-SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG--------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~-~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 515 (1343)
.++++|++..|.. ++...++++|||++++||.+|+||+||||||-..++++|+++. -+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 5788888877753 3356799999999999999999999999999999999999985 468999887
Q ss_pred --------eEEEEcccccc-cC--cc----HHHHhccCCCCCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCC
Q 000702 516 --------TAAYVSQSAWI-QS--GN----IEENILFGSPMDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN 576 (1343)
Q Consensus 516 --------~i~~v~Q~~~l-~~--~t----i~~Ni~~g~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 576 (1343)
+|+.++|+|-- .| -| |.|-|......+. ++..+.++..++.+- ...+......
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 48999999963 22 23 4455555444332 223333333333221 1234456778
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000702 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRI 653 (1343)
Q Consensus 577 LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i 653 (1343)
|||||||||-||-||..+|++||-||||.|||..+..+|++. ++.+. .|..+++|||++..+.. ||+|+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L-l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL-LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH-HHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 999999999999999999999999999999999999999864 44332 38999999999999876 999999999999
Q ss_pred EEecChHHHHhcCcc-HHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHH
Q 000702 654 IQAGKYDDLLQAGTD-FNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQ 732 (1343)
Q Consensus 654 ~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1343)
+|+|+.+++...... |.+..-
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll---------------------------------------------------------- 258 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLL---------------------------------------------------------- 258 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHH----------------------------------------------------------
Confidence 999998877642110 000000
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 000702 733 KAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPK 812 (1343)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 812 (1343)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchh
Q 000702 813 VNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPF 892 (1343)
Q Consensus 813 ~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~ 892 (1343)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecC
Q 000702 893 RLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFG 972 (1343)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~ 972 (1343)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000702 973 QEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWI 1052 (1343)
Q Consensus 973 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~ 1052 (1343)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCC---------CCcccccceeEecC
Q 000702 1053 LSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGEN---------LPLVLHGITCAFPG 1123 (1343)
Q Consensus 1053 ~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vL~~is~~I~~ 1123 (1343)
..|+ .+..+|..-...--++.+||.+.|+-. .-.+.+||||+.++
T Consensus 259 ----------------------~aeP----~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~ 312 (534)
T COG4172 259 ----------------------AAEP----SGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR 312 (534)
T ss_pred ----------------------hcCC----CCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecC
Confidence 0000 000011111122346777777777421 12479999999999
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---HhhcceeecCCccc-cC--CchhhhcC----
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LRSRLGIIPQDPNL-FE--GTIRCNLD---- 1193 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR~~i~iVpQdp~l-F~--gTIr~NLd---- 1193 (1343)
||.+||||+||||||||-.+|+|+++++ |+|.++|.||...+.++ +|+++-+|+|||+= ++ .||-+-+.
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 9999999999999999999999999876 99999999999988776 78999999999971 11 24444332
Q ss_pred CCC-CC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000702 1194 PLE-EH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268 (1343)
Q Consensus 1194 p~~-~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~t 1268 (1343)
-.. .. .|+.+.+||+.+||+.-..+. -...||||||||+|||||+.-+|++++||||||+||..-
T Consensus 392 vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R----------YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 392 VHEPKLSAAERDQRVIEALEEVGLDPATRNR----------YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCChhHhhc----------CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 111 22 356689999999998755432 125699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHHH-HHHH
Q 000702 1269 DNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFL-KLVT 1331 (1343)
Q Consensus 1269 e~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f~-~l~~ 1331 (1343)
.++|.+.|++.- .+-+-++|+|+|..++. ||+|+||.+|+|||+|+-+++++++...|. +|+.
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L~~ 528 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHHHH
Confidence 999999998764 36799999999999976 999999999999999999999999988775 4444
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=674.05 Aligned_cols=474 Identities=19% Similarity=0.221 Sum_probs=374.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 841 ATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLL 920 (1343)
Q Consensus 841 ~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1343)
...+.+....+...+++++++.|..++++.++|+++||+++|++.++... ..+..++...+.++++++++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667777778889999999999999999999999999999999999875 44555555554444443333221001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 000702 921 LVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIE 1000 (1343)
Q Consensus 921 ~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 1000 (1343)
+.++++++++.+..++.+..+..++.....+....+.+.|.++|+++||+|++|+.+.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222344445555666666667777788999999999999999999999999988877665554443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCCC
Q 000702 1001 WLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPP 1080 (1343)
Q Consensus 1001 wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1080 (1343)
+.......... ++.++.+.......+.++++.+..++++...+..++..+...+..+.....|.+|+.++++.+++...
T Consensus 525 ~~~~~~~~~~~-~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIPV-VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 32222211111 11111222222346789999999999999999999999999999999999999999999976543211
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcC
Q 000702 1081 VIEDSRPPSSWPENGTIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1081 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG 1159 (1343)
. .+ ...+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ~----~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 Q----NP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred c----cC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 11 111234579999999999753 35799999999999999999999999999999999999999999773
Q ss_pred eecCCCChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1160 IDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1160 ~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
.+|++|+||||+|.+|+|||||||..+.++++++++++++.|+|.+++..+|+|+||.|||+|.+||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHH
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQ-KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~-~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eL 1318 (1343)
||||||||++++|+|+|||||||+||++|++.|. +.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+||
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999775 557766789999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHhc
Q 000702 1319 LEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1319 l~~~~~~f~~l~~~~~ 1334 (1343)
++ +++.|+++++...
T Consensus 827 ~~-~~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SK-SGSLFKKLMENAG 841 (1495)
T ss_pred Hh-cchhHHHHHHhcc
Confidence 97 4688999987543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=662.85 Aligned_cols=549 Identities=16% Similarity=0.174 Sum_probs=389.4
Q ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 123 PSLALAILKSFWKE--AALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGV 200 (1343)
Q Consensus 123 ~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (1343)
.+.++.+++..++. +++.+++.++..++....|+.++...+....... ....| .+++++..++..++.....+..
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~~~~--~~i~~~l~~~~~i~~~~~~~~~ 977 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH-GPLFY--NLIYALLSFGQVLVTLLNSYWL 977 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-chhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666654322 2222333444556666777777766653221111 11112 2222223333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 201 DILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASV 279 (1343)
Q Consensus 201 ~~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l 279 (1343)
.+.+.+.-..|+..+|+++++.+..+++++++|+++|++++|++.+++... .+..+....+.++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999999999999999999999999999999999988654 4455555555555555444332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 280 ATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQA 359 (1343)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 359 (1343)
+.+.++++++.+..++.+..++.++.....+....+.+.|.++|+++||.|++|+.|.+...+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333444445555555666777889999999999999999998887766555444332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000702 360 FITFIFWSSPIFVAAVTFGTSILLG-AQLT-----AGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE 433 (1343)
Q Consensus 360 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~lt-----~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~ 433 (1343)
...........++ ++..+.+.+.. +... ++.+-.++++...+..++..+......+..+.+|++|+.++++.|
T Consensus 1138 wl~~~l~~~~~~~-i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1138 WLAIRLETLGGLM-IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111000111111 11122222332 2111 233333444555666777777777888899999999999999876
Q ss_pred cccccccc-c-cCC-CCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcE
Q 000702 434 ELQEDATI-V-LPR-GMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510 (1343)
Q Consensus 434 e~~~~~~~-~-~~~-~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 510 (1343)
++.+.... . .+. .+..+.|+|+|++|+|.++ .+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~ 1295 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce
Confidence 54321110 1 111 1223579999999999643 357999999999999999999999999999999999999999999
Q ss_pred EEECC-------------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCC
Q 000702 511 VRLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577 (1343)
Q Consensus 511 i~~~g-------------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 577 (1343)
|.+|| +++||||+|.+|+|||||||.++.++++++..++++.|++++.++.+|+|++|.|||+|.+|
T Consensus 1296 I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nL 1375 (1622)
T PLN03130 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375 (1622)
T ss_pred EEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCC
Confidence 99998 38999999999999999999999889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEec
Q 000702 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAG 657 (1343)
Q Consensus 578 SgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g 657 (1343)
|||||||+|||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|+||++|+|++.|
T Consensus 1376 SgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999998776 45677777899999999999999999999999999999999
Q ss_pred ChHHHHhc-CccHHHHHHHHH
Q 000702 658 KYDDLLQA-GTDFNALVSAHH 677 (1343)
Q Consensus 658 ~~~~l~~~-~~~~~~~~~~~~ 677 (1343)
+|+||+++ ++.|.++++...
T Consensus 1455 t~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1455 TPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CHHHHHhCCCCHHHHHHHHcC
Confidence 99999987 578888876543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=612.97 Aligned_cols=472 Identities=16% Similarity=0.187 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 000702 829 SSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGII 908 (1343)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~ 908 (1343)
..++.+++.++....+.+...+++.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344567788888889999999999999999999999999999999999999999999987654 4677788888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcH---HHHHHHHHHHH
Q 000702 909 GVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQE---KRFMKRNLYLL 985 (1343)
Q Consensus 909 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~---~~~~~~~~~~~ 985 (1343)
+++++++|.+++++++.+++.+++..++.+..+...+......+.+.+++.|.++|+.+++ ++.+ +.+.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 9999999999887777666666666666666666666667778889999999999999995 5543 35566666665
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000702 986 DCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISI 1065 (1343)
Q Consensus 986 d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~ 1065 (1343)
+...+..................+..++ ++.++......+..+.+.+++...+...+..++..+...+.++.....+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 296 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGA--IGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAF 296 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433322111111111111111111 11111111111112333344444444556688899999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000702 1066 ERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALF 1145 (1343)
Q Consensus 1066 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~ 1145 (1343)
+|+.++.+.+.+++.. ...+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+
T Consensus 297 ~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 297 NKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999987654432111 11111 223579999999999743 46999999999999999999999999999999999
Q ss_pred cccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCc
Q 000702 1146 RLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLET 1225 (1343)
Q Consensus 1146 rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt 1225 (1343)
|+++|++|+|.+||+|+++++.+++|+++++|||||.+|++|+++| ..+.+|++++++++++++.+.+.. ++|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC--
Confidence 9999999999999999999999999999999999999999999999 245778899999999998877652 4332
Q ss_pred ccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccccCEEEE
Q 000702 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLV 1303 (1343)
Q Consensus 1226 ~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIlv 1303 (1343)
.+|.+||||||||++||||++++|+|||||||||+||+++++.|.+.+.+.. +++|+|+||||++++..||+|++
T Consensus 445 ---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~ 521 (547)
T PRK10522 445 ---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE 521 (547)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE
Confidence 1478999999999999999999999999999999999999999999997655 47999999999999999999999
Q ss_pred EeCCEEeee-cChhHHh
Q 000702 1304 LSDGRVAEF-DTPGRLL 1319 (1343)
Q Consensus 1304 l~~G~ive~-g~p~eLl 1319 (1343)
|++|+++|. |++.+-.
T Consensus 522 l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 522 MRNGQLSELTGEERDAA 538 (547)
T ss_pred EECCEEEEecCCchhhh
Confidence 999999988 4554443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=623.04 Aligned_cols=480 Identities=24% Similarity=0.357 Sum_probs=335.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--eEEEEcccccccC
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSAWIQS 528 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 528 (1343)
.++++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ .++|++|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999842 35799999999999999999999999999999999999999999999975 6999999998874
Q ss_pred -ccHHHHhccCCCC------------------CH---------HHHHHHHHHhhhhh-------hHhhccCCCccccCCC
Q 000702 529 -GNIEENILFGSPM------------------DK---------AKYKKVIHACSLKK-------DLELFSHGDQTIIGDR 573 (1343)
Q Consensus 529 -~ti~~Ni~~g~~~------------------~~---------~~~~~~~~~~~l~~-------~~~~l~~g~~t~ig~~ 573 (1343)
.|++|||.++... ++ .++.++++.++..+ -++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 6999999876310 01 12233333443221 11222 221 13556
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000702 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGR 652 (1343)
Q Consensus 574 g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~ 652 (1343)
..+|||||||||+||||++.+|+++||||||++||+.+.+++.+ .+... ++|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 78999999999999999999999999999999999999887765 45443 4699999999999875 99999999999
Q ss_pred EE-EecChHHHHhcCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhH
Q 000702 653 II-QAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASE 731 (1343)
Q Consensus 653 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1343)
++ +.|+++++.+... ...+.
T Consensus 236 i~~~~g~~~~~~~~~~----------~~~~~------------------------------------------------- 256 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKE----------KRLEQ------------------------------------------------- 256 (552)
T ss_pred EEEecCCHHHHHHHHH----------HHHHH-------------------------------------------------
Confidence 75 7899988754210 00000
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCC
Q 000702 732 QKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQP 811 (1343)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 811 (1343)
.....+. ...+....+. |+. .
T Consensus 257 ~~~~~~~------~~~~~~~~~~-------------------------------------------~~~---~------- 277 (552)
T TIGR03719 257 EEKEESA------RQKALKRELE-------------------------------------------WVR---S------- 277 (552)
T ss_pred HHHHHHH------HHHHHHHHHH-------------------------------------------HHH---h-------
Confidence 0000000 0000000000 000 0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccch
Q 000702 812 KVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIP 891 (1343)
Q Consensus 812 ~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~ 891 (1343)
.+
T Consensus 278 --------------------------------------------------~~---------------------------- 279 (552)
T TIGR03719 278 --------------------------------------------------SP---------------------------- 279 (552)
T ss_pred --------------------------------------------------hh----------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeec
Q 000702 892 FRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGF 971 (1343)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf 971 (1343)
..++.
T Consensus 280 -----------------------------------------------~~~~~---------------------------- 284 (552)
T TIGR03719 280 -----------------------------------------------KARQA---------------------------- 284 (552)
T ss_pred -----------------------------------------------hhHHH----------------------------
Confidence 00000
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000702 972 GQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051 (1343)
Q Consensus 972 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~ 1051 (1343)
+
T Consensus 285 --------~----------------------------------------------------------------------- 285 (552)
T TIGR03719 285 --------K----------------------------------------------------------------------- 285 (552)
T ss_pred --------H-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEc
Q 000702 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVG 1131 (1343)
Q Consensus 1052 ~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVG 1131 (1343)
.+......++..+. . ++..+.......+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+|
T Consensus 286 ------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G 355 (552)
T TIGR03719 286 ------SKARLARYEELLSQ-E-FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIG 355 (552)
T ss_pred ------HHHHHHHHHhhhhh-c-ccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEEC
Confidence 00000000111000 0 0000000000000000012235999999999964 359999999999999999999
Q ss_pred CCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCcc-ccC-CchhhhcCCCC---CC--CHHHHH
Q 000702 1132 RTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPN-LFE-GTIRCNLDPLE---EH--SDREIW 1204 (1343)
Q Consensus 1132 rTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~-lF~-gTIr~NLdp~~---~~--sd~ei~ 1204 (1343)
+||||||||+++|.|++.|++|+|.+++ + .+|+|+||++. ++. -|+++|+.... .. .+.+..
T Consensus 356 ~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 424 (552)
T TIGR03719 356 PNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR 424 (552)
T ss_pred CCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH
Confidence 9999999999999999999999999954 2 16999999973 564 49999996421 11 133455
Q ss_pred HHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcE
Q 000702 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCT 1284 (1343)
Q Consensus 1205 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~T 1284 (1343)
++++..++.+.. .+.++ ..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. . .|
T Consensus 425 ~~l~~~~l~~~~------~~~~~----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~ 492 (552)
T TIGR03719 425 AYVGRFNFKGSD------QQKKV----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GC 492 (552)
T ss_pred HHHHhCCCChhH------hcCch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-Ce
Confidence 677777774321 12233 479999999999999999999999999999999999999999999976 3 48
Q ss_pred EEEeccCcccccc-cCEEEEEeC-CEEeee-cChhHHhhc
Q 000702 1285 VCTIAHRIPTVID-SDLVLVLSD-GRVAEF-DTPGRLLED 1321 (1343)
Q Consensus 1285 vI~IaHrl~ti~~-~DrIlvl~~-G~ive~-g~p~eLl~~ 1321 (1343)
||+|||+++.+.. ||||++|++ |++.++ |+++++.+.
T Consensus 493 viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 493 AVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 9999999999876 999999997 688744 777776543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=562.19 Aligned_cols=539 Identities=22% Similarity=0.308 Sum_probs=410.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 000702 133 FWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPH-EGYILAGIFFSAKLV--ETITTRQWYLGVDILGMHVRS 209 (1343)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~ir~ 209 (1343)
..-..+.+.++..+.-++....|.+.+.+.+.+..+....+ ..+.++++-++-... ..+....-.+..-++..--..
T Consensus 213 lql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR 292 (790)
T KOG0056|consen 213 LQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTR 292 (790)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHH
Confidence 33444555666667777888889999999998875443222 122232222221110 112222222222334444455
Q ss_pred HHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000702 210 ALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWY-LHDIWMLPLQIILALAILYK-NVGIASVATLIATII 287 (1343)
Q Consensus 210 ~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~-~~g~~~l~~~~~~~~ 287 (1343)
.+...+|+|.+.|+....-+.++|+++..|....+.+. +..+ ..++....+.++++++.++. ...|-.++.++++.+
T Consensus 293 ~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~l 371 (790)
T KOG0056|consen 293 EIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLL 371 (790)
T ss_pred HHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 67789999999999998888899999988877666655 3322 23333334455555543332 222444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 288 SIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWED----RYRIQLEEMRGVEFRWLRKALYSQAFITF 363 (1343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~----~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 363 (1343)
++-+.+.+.....++++++...-.+....-.+.+-|.+++|.|+.|+ ++.+.|.+..+.|-+.+.....+......
T Consensus 372 Y~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~ 451 (790)
T KOG0056|consen 372 YCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNG 451 (790)
T ss_pred HhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555555666677777777666666677889999999999999886 45555666666665543333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q 000702 364 IFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVL 443 (1343)
Q Consensus 364 ~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~ 443 (1343)
++ ...++....+.+|.+..+.+|.|....+.+|+-.+..|++.+......++...+-++|+.+.++++++..+.....
T Consensus 452 Ii--~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 452 II--GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hh--hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 21 1112233445667777889999999999999999999999999999999999999999999998876554433223
Q ss_pred CCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------
Q 000702 444 PRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------- 515 (1343)
Q Consensus 444 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 515 (1343)
|-....+.|+++|++|.|++ ++|+|+||||++.||+.+|+|||||+||||++++|.++++..+|+|.+||
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 33334567999999999965 58999999999999999999999999999999999999999999999999
Q ss_pred -----eEEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lAR 589 (1343)
.||.||||..+||+||..||.+|++ ..+++..++.+|+++++.+-.+|+|++|.|||+|-.||||+|||||+||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 3899999999999999999999988 4566777888999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc-Ccc
Q 000702 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA-GTD 668 (1343)
Q Consensus 590 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 668 (1343)
+++++|.|++|||+|||||.++++.| +.++.....++|.|+|+||++++-+||.|++++||+|+|.|+|+|+++. ++.
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 99999999999999999999998887 6788888899999999999999999999999999999999999999987 889
Q ss_pred HHHHHHHHH
Q 000702 669 FNALVSAHH 677 (1343)
Q Consensus 669 ~~~~~~~~~ 677 (1343)
|.++++.+.
T Consensus 767 Ya~MWq~qq 775 (790)
T KOG0056|consen 767 YADMWQAQQ 775 (790)
T ss_pred HHHHHHHHH
Confidence 999986544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-61 Score=649.72 Aligned_cols=471 Identities=16% Similarity=0.179 Sum_probs=366.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 204 GMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATL 282 (1343)
Q Consensus 204 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~ 282 (1343)
+.+....++..+|+++++.+..++++.++|+++|++++|++.+++.+. .+..++...+.++.++++++...++.+++.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445788999999999999999999999999999999999988654 4555556666666655555444333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000702 283 IATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRK----ALYSQ 358 (1343)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~----~~~~~ 358 (1343)
.++++++.+..++.+..++.++......+...+.++|.++|+++||.|++|+.+.++..+.-+...+.... ..+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333444555566666666667777788999999999999999999998888776554433332211 11221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-
Q 000702 359 AFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQE- 437 (1343)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~- 437 (1343)
....++.......+.++....+....+.+++|.+..++.+...+..|+..+...+..+..+..|++|+.++++..+.++
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1111111111111111111122222345789988888888889999999999999999999999999999996322111
Q ss_pred cc------------------------cccc-----CCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcC
Q 000702 438 DA------------------------TIVL-----PRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGM 488 (1343)
Q Consensus 438 ~~------------------------~~~~-----~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~ 488 (1343)
.. .... +.....+.|+|+|++|+|++ +.+++|+|+||+|++||++||||+
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~-~~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE-GLPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCC-CCCceeecceEEECCCCEEEEECC
Confidence 00 0000 01112346999999999964 335699999999999999999999
Q ss_pred CCCCHHHHHHHHhcCccCCCcEEEECC-------------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhh
Q 000702 489 VGSGKSSLLSCILGEIPKISGEVRLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL 555 (1343)
Q Consensus 489 ~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l 555 (1343)
||||||||+++|+|+++|++|+|.+|| .++||||+|.+|+|||||||..+.++++++++++++.|++
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 999999999999999999999999998 3799999999999999999998778899999999999999
Q ss_pred hhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEec
Q 000702 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD-ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634 (1343)
Q Consensus 556 ~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~-~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH 634 (1343)
++.+..+|+|++|.+||+|.+|||||||||+|||||+++ |+|||||||||+||+++++.| ++.++...+++|+|+|||
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~IAH 1503 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIAH 1503 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEEec
Confidence 999999999999999999999999999999999999996 899999999999999998777 455667778999999999
Q ss_pred CCCccccCCEEEEEeCCeEEEecChHHHHhc-CccHHHHHHHH
Q 000702 635 QVEFLPAADFILVLKEGRIIQAGKYDDLLQA-GTDFNALVSAH 676 (1343)
Q Consensus 635 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 676 (1343)
|++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++...
T Consensus 1504 Rl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred cHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999999999974 77888887654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=620.07 Aligned_cols=200 Identities=21% Similarity=0.321 Sum_probs=168.8
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 36999999999964 35999999999999999999999999999999999999999999999741 269
Q ss_pred eeecCCc--cccC-CchhhhcCC-CCCCCHHHHHHHHHHcCCch-HHhcccCCCCcccccCCCCCChhHHHHHHHHHHHh
Q 000702 1175 GIIPQDP--NLFE-GTIRCNLDP-LEEHSDREIWEALDKSQLGD-IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249 (1343)
Q Consensus 1175 ~iVpQdp--~lF~-gTIr~NLdp-~~~~sd~ei~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1249 (1343)
+|+||++ .++. .|+.+++.. .....++++.+.|+..++.. .. +.++ ..||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-------~~~~----~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV-------TEET----RRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh-------cCch----hhCCHHHHHHHHHHHHHh
Confidence 9999985 3433 378877632 22234566788888888743 22 2333 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEe-eecChhHHhh
Q 000702 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVA-EFDTPGRLLE 1320 (1343)
Q Consensus 1250 ~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~iv-e~g~p~eLl~ 1320 (1343)
++|++|||||||++||..+...+.+.|++. + .|||+|||+++.+.. ||||++|++|+++ ..|++++..+
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999875 4 599999999999876 9999999999998 6788888743
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=546.87 Aligned_cols=489 Identities=21% Similarity=0.227 Sum_probs=379.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHH
Q 000702 823 MALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTI 902 (1343)
Q Consensus 823 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~ 902 (1343)
+++.++..++-.+|+.++...+.+.-.+++...+...+++|..--...+..+.+ +|++.+..++...-...+...-
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 334455677889999999999999999999999999988877644333333333 3566665554442221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHH
Q 000702 903 QLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNL 982 (1343)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~ 982 (1343)
-+-..+++++.++|++.++.+.-.++.+.+...--..+++-.+..++....-..+...+..+.++|+|.|......+++.
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 23344566777888887766655444444444444445555555566666677888999999999999999887777766
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 983 YLLDCFARPFFCSLAAIEWLCLRMELLSTFV-FAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENK 1061 (1343)
Q Consensus 983 ~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~-~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~ 1061 (1343)
+....+....-.....+.-++.....+=.+. ..+..+-..+...|.+++|++...-...-....++...+..|.++-..
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~A 305 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAA 305 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 5554444333222222222222111111111 111111223344788999887766666666778889999999999999
Q ss_pred hhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHH
Q 000702 1062 IISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLI 1141 (1343)
Q Consensus 1062 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl 1141 (1343)
..|..|+.+..+..++..... ..| ..+|.+.++++++.-++...|+|+|+||+++|||-+|||||||||||||.
T Consensus 306 r~s~~Rl~~lL~~~p~~~~~m---~LP---~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa 379 (580)
T COG4618 306 RQSYKRLNELLAELPAAAERM---PLP---APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA 379 (580)
T ss_pred HHHHHHHHHHHHhCccccCCC---CCC---CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH
Confidence 999999999987544432211 111 13689999999997777777999999999999999999999999999999
Q ss_pred HHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhccc
Q 000702 1142 QALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKD 1220 (1343)
Q Consensus 1142 ~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp 1220 (1343)
++|.|...|.+|+|.+||-|+++.+.++|-++|||.|||-.||+|||.|||.-|+ +.+++.|.+|.+.++.||.|.++|
T Consensus 380 R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP 459 (580)
T COG4618 380 RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLP 459 (580)
T ss_pred HHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999998665 778888999999999999999999
Q ss_pred CCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccC
Q 000702 1221 QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSD 1299 (1343)
Q Consensus 1221 ~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D 1299 (1343)
+||||.|||+|..||||||||++||||++.+|+++|||||.||||.+-|+.+.++|.+.. +++|+|+||||.+.+..+|
T Consensus 460 ~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 460 QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred CCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999988654 6899999999999999999
Q ss_pred EEEEEeCCEEeeecChhHHhhc
Q 000702 1300 LVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1300 rIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
+|+||++|++..||+-+|.+++
T Consensus 540 kilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 540 KILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred eeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999875
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=585.94 Aligned_cols=515 Identities=15% Similarity=0.130 Sum_probs=383.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILK-SFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILG 204 (1343)
Q Consensus 126 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (1343)
+..+++ .+|+.+++++++.++..++..+.|++++.+++...... ....+.++ ++ .++..++.....+...+.+
T Consensus 8 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~ 81 (555)
T TIGR01194 8 ILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--QGSLFSFG-GL---CLLALLFRIGADIFPAYAG 81 (555)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--chHHHHHH-HH---HHHHHHHHHHHHHHHHHHH
Confidence 444778 88999999999999999999999999998886421110 01111111 11 1222233334444557788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 205 MHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 205 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~ 284 (1343)
.++...++..+|+|+++++...+++.++|++++++++|++.+++++..+..++...+.++++++++++.....+++.+++
T Consensus 82 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~ 161 (555)
T TIGR01194 82 MHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765555555555555555555544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 285 TIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWED--RYRIQLEEMRGVEFRWLRKALYSQAFIT 362 (1343)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~--~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 362 (1343)
+++.+.+..+..++.++..++..+..++..+.+.|.++|++++|.++.++ ...+++.+..++..+...+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44545555566667777778888888999999999999999999999853 3333333322222111111111111111
Q ss_pred HHHHHHHHH-HH-HHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---c
Q 000702 363 FIFWSSPIF-VA-AVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQ---E 437 (1343)
Q Consensus 363 ~~~~~~~~~-~~-~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~---~ 437 (1343)
.+......+ +. .+.++.+ .+.+|+|.+++++.+...+..|+..+.+.+..++++.+|++|+.++++.++.+ .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 111111111 11 1111111 25799999999999999999999999999999999999999999998642211 0
Q ss_pred ccc--ccc---CCCCCcceEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcE
Q 000702 438 DAT--IVL---PRGMTNVAIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510 (1343)
Q Consensus 438 ~~~--~~~---~~~~~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 510 (1343)
+.. ... +.......|+++|++|+|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 000 000 1011124699999999996421 246999999999999999999999999999999999999999999
Q ss_pred EEECCe-------------EEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCC
Q 000702 511 VRLCGT-------------AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577 (1343)
Q Consensus 511 i~~~g~-------------i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 577 (1343)
|.++|. ++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 999983 7999999999999999995 23456778888999999999999999999984 789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccccCCEEEEEeCCeEEEe
Q 000702 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPAADFILVLKEGRIIQA 656 (1343)
Q Consensus 578 SgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~ 656 (1343)
|||||||++||||++++|+++|||||||+||+++++.+.+.+++.. .+++|+|+||||++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998877665433 468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=534.92 Aligned_cols=529 Identities=21% Similarity=0.299 Sum_probs=426.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 122 TPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVD 201 (1343)
Q Consensus 122 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (1343)
......+.+..++..++..++++.+-.++.+..|+.+-++-|-+-...+.+ ....+.++....++++.+++..-.+...
T Consensus 10 ~~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~-TLv~Ltvlal~ly~~~glLd~iR~~~l~ 88 (580)
T COG4618 10 PKNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP-TLVMLTVLALGLYAFQGLLDAIRSRVLV 88 (580)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888999999999999999999999988888775443322 2344455555667777788877778889
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 202 ILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWY-----LHDIWMLPLQIILALAILYKNVGI 276 (1343)
Q Consensus 202 ~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-----~~~~~~~~~~i~~~~~~l~~~~g~ 276 (1343)
|++.++...|...+|.-+.+.+..........+.+ .|.+.+..|... +.+..-.|+-+.+ ++++.-.+|+
T Consensus 89 Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~ 163 (580)
T COG4618 89 RIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999976655443222233333 488888887531 2222234553333 4555566787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 277 ASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALY 356 (1343)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 356 (1343)
.+++|.++++.+..++- +..++-.++-.+..-++.....-..+|.++|+.+|+.+...+++.+....-++......-
T Consensus 164 ~a~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd 240 (580)
T COG4618 164 IALAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASD 240 (580)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 77777766655554444 444556667778888899999999999999999999999999998887776666555443
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000702 357 SQAFITF----IFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQE 432 (1343)
Q Consensus 357 ~~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~ 432 (1343)
....... +-... -..++..|+|+++.+++|+|.+++...+.+....|+......+.++..|+.|++|++++|..
T Consensus 241 ~~~~~~~~Sr~~Rm~l--Qs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~ 318 (580)
T COG4618 241 RNGAFGALSRALRMAL--QSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318 (580)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322221 11222 23456789999999999999999999999999999999999999999999999999999976
Q ss_pred cccccccccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEE
Q 000702 433 EELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512 (1343)
Q Consensus 433 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~ 512 (1343)
....... ...| .....+.++++++. +++.++|+++||||++.+||-++|+||||||||||.++|.|.++|++|.|+
T Consensus 319 ~p~~~~~-m~LP--~P~g~L~Ve~l~~~-PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 319 LPAAAER-MPLP--APQGALSVERLTAA-PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred CccccCC-CCCC--CCCceeeEeeeeec-CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 5433221 2233 33457999999996 667778999999999999999999999999999999999999999999999
Q ss_pred ECC-------------eEEEEcccccccCccHHHHhc-cCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCC
Q 000702 513 LCG-------------TAAYVSQSAWIQSGNIEENIL-FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLS 578 (1343)
Q Consensus 513 ~~g-------------~i~~v~Q~~~l~~~ti~~Ni~-~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 578 (1343)
+|| +|||.||+..+|.|||+|||+ |+.+.|++++-++.++++.++-+-.+|+||+|.||+.|.+||
T Consensus 395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LS 474 (580)
T COG4618 395 LDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLS 474 (580)
T ss_pred ecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCC
Confidence 998 599999999999999999996 777888888888888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000702 579 GGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 579 gGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 658 (1343)
|||||||+||||+|.+|.+++||||-|+||.+-+..+.+.+..-..+|.|+|+||||++.+..+|+|.+|+||++...|+
T Consensus 475 gGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~ 554 (580)
T COG4618 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGP 554 (580)
T ss_pred chHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCC
Confidence 99999999999999999999999999999999988887665555567999999999999999999999999999999999
Q ss_pred hHHHHhc
Q 000702 659 YDDLLQA 665 (1343)
Q Consensus 659 ~~~l~~~ 665 (1343)
-+|++++
T Consensus 555 r~eVLa~ 561 (580)
T COG4618 555 REEVLAK 561 (580)
T ss_pred HHHHHHH
Confidence 9998753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-61 Score=608.77 Aligned_cols=200 Identities=22% Similarity=0.352 Sum_probs=166.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999 4332 599
Q ss_pred eecCCc-cccCC-chhhhcCCCC-CC--C--HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1176 IIPQDP-NLFEG-TIRCNLDPLE-EH--S--DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1176 iVpQdp-~lF~g-TIr~NLdp~~-~~--s--d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
|+||++ .++.. |+++|+.... .. . +.++.+.|+..++... ..+.++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK------RAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH------HHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46654 9999996421 11 1 4456777777776421 123333 46999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEe-CCEEeee-cChhHHhh
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS-DGRVAEF-DTPGRLLE 1320 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~-~G~ive~-g~p~eLl~ 1320 (1343)
+.+|++|||||||++||..+...+.+.|++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ |++.+-++
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999999875 5699999999998865 99999998 8999886 56766643
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-60 Score=570.03 Aligned_cols=485 Identities=26% Similarity=0.380 Sum_probs=346.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--eEEEEcccccccC
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSAWIQS 528 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 528 (1343)
.|.++|++++|. ++++|+|+||++.+|++++|||+|||||||||++|+|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 588999999983 57899999999999999999999999999999999999999999999987 6999999998875
Q ss_pred -ccHHHHhccCCCCC---HHHHHHHHHH---------------------hhhhhhHhhccC--CCccccCCCCCCCChHH
Q 000702 529 -GNIEENILFGSPMD---KAKYKKVIHA---------------------CSLKKDLELFSH--GDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 529 -~ti~~Ni~~g~~~~---~~~~~~~~~~---------------------~~l~~~~~~l~~--g~~t~ig~~g~~LSgGQ 581 (1343)
.||+|.+..|...- ..+++++... ..++..++..-. |.... .....+|||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 59999998875310 1111211110 011112222111 22222 45667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeE-EEecCh
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRI-IQAGKY 659 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i-~~~g~~ 659 (1343)
|.||+|||||..+||+|||||||++||.++..++ ++.+.. .+| |+|+|||+.+||+. |++|+.+++|++ .+.|+|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 9999999999999999999999999999986665 666554 356 99999999999987 999999999988 588999
Q ss_pred HHHHhcCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHH
Q 000702 660 DDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKK 739 (1343)
Q Consensus 660 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1343)
+.+++......+. .....+
T Consensus 236 ~~~~~~r~~~~~~-----------------------------------------------------------~~~~~~-- 254 (530)
T COG0488 236 SSYLEQKAERLRQ-----------------------------------------------------------EAAAYE-- 254 (530)
T ss_pred HHHHHHHHHHHHH-----------------------------------------------------------HHHHHH--
Confidence 9876532110000 000000
Q ss_pred HHhhhhhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHH
Q 000702 740 KAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLL 819 (1343)
Q Consensus 740 ~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 819 (1343)
+ ..+.....++ ++.... .
T Consensus 255 -~---~~~~~~~~~~-------------~i~r~~------------------------------~--------------- 272 (530)
T COG0488 255 -K---QQKELAKEQE-------------WIRRGK------------------------------A--------------- 272 (530)
T ss_pred -H---HHHHHHHHHH-------------HHHHHH------------------------------h---------------
Confidence 0 0000000000 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHH
Q 000702 820 VVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFAS 899 (1343)
Q Consensus 820 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~ 899 (1343)
T Consensus 273 -------------------------------------------------------------------------------- 272 (530)
T COG0488 273 -------------------------------------------------------------------------------- 272 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHH
Q 000702 900 TTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMK 979 (1343)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~ 979 (1343)
...+++
T Consensus 273 ------------------------------------~~~~~k-------------------------------------- 278 (530)
T COG0488 273 ------------------------------------AASKAK-------------------------------------- 278 (530)
T ss_pred ------------------------------------ccchHH--------------------------------------
Confidence 000000
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 980 RNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLE 1059 (1343)
Q Consensus 980 ~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e 1059 (1343)
..+
T Consensus 279 -----------------------------------------------------------------------------~a~ 281 (530)
T COG0488 279 -----------------------------------------------------------------------------KAK 281 (530)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHhhhHHHHHHh--hcCCCCCCCCC-CCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCC
Q 000702 1060 NKIISIERIYQY--SQIPGEAPPVI-EDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSG 1136 (1343)
Q Consensus 1060 ~~~~s~eRi~~~--~~~~~e~~~~~-~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsG 1136 (1343)
..+...+++.+- ...|....... ....++..-..+-.++++|+++.|+++ .++++++||.|++|+|||||||||+|
T Consensus 282 sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~G 360 (530)
T COG0488 282 SRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAG 360 (530)
T ss_pred HHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCC
Confidence 001111121110 00011100000 001111111234469999999999765 57999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCc-cccC-CchhhhcCCCC-CCCHHHHHHHHHHcCCc
Q 000702 1137 KSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP-NLFE-GTIRCNLDPLE-EHSDREIWEALDKSQLG 1213 (1343)
Q Consensus 1137 KSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp-~lF~-gTIr~NLdp~~-~~sd~ei~~aL~~~~L~ 1213 (1343)
||||+++|.|-..|.+|+|.++- .-++||.+|+. .++. .|+-+++.... +..+.++...|.+.++.
T Consensus 361 KSTLlk~l~g~~~~~~G~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 361 KSTLLKLLAGELGPLSGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred HHHHHHHHhhhcccCCceEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 99999999999999999998864 13599999998 4443 38888886433 44478899999999886
Q ss_pred hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcc
Q 000702 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293 (1343)
Q Consensus 1214 ~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1293 (1343)
.-- ..++| ..||||||-|+.||+.++.+|++|||||||.+||.+|-..+.++|.+ |+| |||+|||+..
T Consensus 430 ~~~------~~~~v----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~ 497 (530)
T COG0488 430 GED------QEKPV----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRY 497 (530)
T ss_pred hHH------HhCch----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHH
Confidence 432 23445 47999999999999999999999999999999999999999999985 544 9999999999
Q ss_pred cccc-cCEEEEEeCCEEeee-cChhHHhhc
Q 000702 1294 TVID-SDLVLVLSDGRVAEF-DTPGRLLED 1321 (1343)
Q Consensus 1294 ti~~-~DrIlvl~~G~ive~-g~p~eLl~~ 1321 (1343)
.+.. |++|+++++ ++.++ |.+++..+.
T Consensus 498 Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 498 FLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9977 999999999 88888 788887754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-58 Score=620.72 Aligned_cols=470 Identities=21% Similarity=0.228 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 200 VDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIAS 278 (1343)
Q Consensus 200 ~~~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~ 278 (1343)
..+.+.+.-..+...+|+++++.+..++++.++|+++|+++.|++.+++.+. .+..+....+.+++.+++++...++.+
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888899999999999999999999999999999999999988654 455555566666666655555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH----H
Q 000702 279 VATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRK----A 354 (1343)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~----~ 354 (1343)
++.+.++++++.+..++.+..++.++.....++...+.+.|.++|+.+||.|++|+.|.++..+.-+...+.... .
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344445555555666666677778888999999999999999999999988877655432221111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000702 355 LYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEE 434 (1343)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e 434 (1343)
.+......++ ...++.++.+ ..+.....++|.+..+++++..+..++..+...+..+..+.+|++|+.+|++.++
T Consensus 1109 ~wl~~~~~~i---~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~ 1183 (1490)
T TIGR01271 1109 RWFQMRIDII---FVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQ 1183 (1490)
T ss_pred HHHHHHHHHH---HHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1111111111 1011111111 1111123455666666667777888888888889999999999999999997654
Q ss_pred ccccccc----------------ccC-CCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHH
Q 000702 435 LQEDATI----------------VLP-RGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLL 497 (1343)
Q Consensus 435 ~~~~~~~----------------~~~-~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl 497 (1343)
+...... ..+ .-+..+.|+|+|++|+|++ +.+++|+|+||+|++||++||||+||||||||+
T Consensus 1184 e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl 1262 (1490)
T TIGR01271 1184 EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL 1262 (1490)
T ss_pred ccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEcCCCEEEEECCCCCCHHHHH
Confidence 4221100 000 0112357999999999965 346899999999999999999999999999999
Q ss_pred HHHhcCccCCCcEEEECC-------------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccC
Q 000702 498 SCILGEIPKISGEVRLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSH 564 (1343)
Q Consensus 498 ~~l~g~~~~~~G~i~~~g-------------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~ 564 (1343)
++|+|+++ .+|+|.++| +++||||+|.+|+|||||||....++++++..++++.|++.+.+..+|+
T Consensus 1263 ~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~ 1341 (1490)
T TIGR01271 1263 SALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPD 1341 (1490)
T ss_pred HHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcc
Confidence 99999997 799999998 3899999999999999999987777889999999999999999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCE
Q 000702 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADF 644 (1343)
Q Consensus 565 g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~ 644 (1343)
|++|.|||+|.+||||||||++|||||+++|+|+|||||||+||+++++.|.+ .++...+++|+|+||||++.+..||+
T Consensus 1342 GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~ti~~~Dr 1420 (1490)
T TIGR01271 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEALLECQQ 1420 (1490)
T ss_pred ccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999887754 56667789999999999999999999
Q ss_pred EEEEeCCeEEEecChHHHHhcCccHHHHHHHHH
Q 000702 645 ILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHH 677 (1343)
Q Consensus 645 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 677 (1343)
|++|++|+|++.|+|++|++.++.|.++++...
T Consensus 1421 IlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1421 FLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 999999999999999999987788888876544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=614.78 Aligned_cols=212 Identities=22% Similarity=0.263 Sum_probs=177.8
Q ss_pred eEEEEEEEEEEcC-----------CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CcceEEEcCeec
Q 000702 1096 TIELIDLKVRYGE-----------NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP--ACGRIIIDNIDI 1162 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~-----------~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~--~~G~I~IdG~di 1162 (1343)
.+.|+||++..+. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998742 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCChHHHhhcceeecCCccccC-CchhhhcCCC------CCCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCC
Q 000702 1163 STIGLHDLRSRLGIIPQDPNLFE-GTIRCNLDPL------EEHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENG 1231 (1343)
Q Consensus 1163 ~~i~l~~LR~~i~iVpQdp~lF~-gTIr~NLdp~------~~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1231 (1343)
++ ..+|+.++||+|++.++. .|++|||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 43 456788999999998876 4999999531 122333 36778888888654 356666443
Q ss_pred -CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccc-c-cccCEEEEEeC-
Q 000702 1232 -DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPT-V-IDSDLVLVLSD- 1306 (1343)
Q Consensus 1232 -~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t-i-~~~DrIlvl~~- 1306 (1343)
..||||||||++|||||+.+|+||+||||||+||..+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999864 47899999999984 4 56999999996
Q ss_pred CEEeeecChhH
Q 000702 1307 GRVAEFDTPGR 1317 (1343)
Q Consensus 1307 G~ive~g~p~e 1317 (1343)
|+++.+|++.+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998753
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=597.16 Aligned_cols=200 Identities=20% Similarity=0.267 Sum_probs=166.4
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhc
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~ 1173 (1343)
...|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.+
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 3469999999999643 3599999999999999999999999999999999999999999999876 347
Q ss_pred ceeecCCccccCCchhhhcC-----CCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1174 LGIIPQDPNLFEGTIRCNLD-----PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1174 i~iVpQdp~lF~gTIr~NLd-----p~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
|+|+||++. ...++.+|.. .+...+++++.++|+..++.+... +.+ ...||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~~~----~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQP----MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------cCC----ccccCHHHHHHHHHHHHH
Confidence 999999973 2224444421 122345778889999999864221 122 257999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEe-eecChhHH
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVA-EFDTPGRL 1318 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~iv-e~g~p~eL 1318 (1343)
+++|++|||||||++||..+...+.+.|++. + .|||+|||+++.+.. ||||++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999864 4 499999999999876 9999999999998 56777664
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=559.36 Aligned_cols=513 Identities=17% Similarity=0.141 Sum_probs=370.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 125 LALAILKSFWKEAALNAVFAGLNTIVSYVG-PYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDIL 203 (1343)
Q Consensus 125 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (1343)
+++.+++.+++.++...++.++..++.++. |++.+.++|.+... ....+.+++++++..+ +.....+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMA----VTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 567888999999999999999999988874 77888888865321 1111111111211111 222333445667
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 204 GMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLI 283 (1343)
Q Consensus 204 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~ 283 (1343)
+.++...++..+|+|+++++...+++.++|++++++++|++.+..++..+..++...+.+++++++++...+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888899999999999999999999999999999999999998765556667777777777777766655555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 284 ATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQA--WEDRYRIQLEEMRGVEFRWLRKALYSQAFI 361 (1343)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~--~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 361 (1343)
++++.+.+..++.++.++..++.++..+++.+.+.|.++|++++++.+ .++.+.+++++..++-.+...+........
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 666666677788888888888999999999999999999999997432 223444444433222111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 000702 362 TFIFWSSPIFVAAVTFGTSILLGA---QLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQED 438 (1343)
Q Consensus 362 ~~~~~~~~~~~~~~~f~~~~~~~~---~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~ 438 (1343)
....... ..+.++.+.+.++ ..+.+.+.++..+...+..|+..+...+..++++.++.+|+.++++.++..+.
T Consensus 236 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 236 VNWSNIM----MLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 1111011 1111222222211 12223333333333346789999999999999999999999999865432211
Q ss_pred cccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---
Q 000702 439 ATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--- 515 (1343)
Q Consensus 439 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 515 (1343)
.. ..+ ......++++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~-~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 312 PR-PQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred cc-ccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 11 111 111236999999999963 35799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 ----------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 ----------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.++||+|+|++|++|++|| +...++++.+++++.+++..++.. ++|. .+|.+||||||||+
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl 458 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRL 458 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHH
Confidence 3899999999999999999 445666777777777776655542 3321 24889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCccccCCEEEEEeCCeEEEe-cChHH
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQA-GKYDD 661 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~-g~~~~ 661 (1343)
+||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+||||++.+..||+|++|++|++++. |+..+
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 999999999999999999999999998888765443322 48999999999999999999999999999875 44433
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=577.04 Aligned_cols=191 Identities=25% Similarity=0.352 Sum_probs=163.6
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred eecCCccc-cCCchhhhcCCC-CCC-CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1176 IIPQDPNL-FEGTIRCNLDPL-EEH-SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1176 iVpQdp~l-F~gTIr~NLdp~-~~~-sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
|+||++.+ ++.|+++|+... ..+ ....+.++++..++.+... .++ .+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 456999999642 122 2335677888888865443 333 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecC
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~ 1314 (1343)
+||||||||++||.++...+.+.|++..+ ++|+|+|+|+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998643 7899999999998865 999999975 8877765
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=572.19 Aligned_cols=511 Identities=14% Similarity=0.113 Sum_probs=403.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 778 IPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNP----MVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFV 853 (1343)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 853 (1343)
+.+.+++.++..++.+..+++.+...+.....+. ... ..++.+++++.++..+..++...+......+..+.+|+
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777788888888765543211110 011 11222233333444455555556666667777888888
Q ss_pred HHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000702 854 KMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTM-VTWQVLLLVIPMAVACLWM 932 (1343)
Q Consensus 854 ~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ip~~~~~~~~ 932 (1343)
+.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.++.++. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888888889999997 8999999999999999999999999999999999888877775 8888888877778888888
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000702 933 QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTF 1012 (1343)
Q Consensus 933 ~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 1012 (1343)
.+++.+..+++.+......+.+.+.+.|.++|+++||+|+.++.+.+++.+..+...+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988888887777777777777776666432
Q ss_pred H-HHH---HHHHHHHhc----CCCCCHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCCC-
Q 000702 1013 V-FAF---CMVLLVSFP----HGAIDPSMA-GLAVTY---GLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAP- 1079 (1343)
Q Consensus 1013 ~-~~~---~~~~~~~~~----~g~~~~~~~-gl~l~~---~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~~- 1079 (1343)
. ..+ .+...+... .|.++.|.. +.+++| ..++..++..+...+.++.....+.+|+.++.+.+++..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 111 111112221 267777753 334444 556788899999999999999999999999986433211
Q ss_pred -----CCCCCCC--------C------CCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHH
Q 000702 1080 -----PVIEDSR--------P------PSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTL 1140 (1343)
Q Consensus 1080 -----~~~~~~~--------~------~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTL 1140 (1343)
...+... . .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000000 0 0000134679999999999643 369999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCC--------CCCCHHHHHHHHHHcCC
Q 000702 1141 IQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL--------EEHSDREIWEALDKSQL 1212 (1343)
Q Consensus 1141 l~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~--------~~~sd~ei~~aL~~~~L 1212 (1343)
+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+++|+... .+.++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999742 23578899999999999
Q ss_pred chHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q 000702 1213 GDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292 (1343)
Q Consensus 1213 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl 1292 (1343)
.+++.+ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999986 46799999999999999999999999999999999999999999999874 89999999999
Q ss_pred ccccccCEEEEEeC
Q 000702 1293 PTVIDSDLVLVLSD 1306 (1343)
Q Consensus 1293 ~ti~~~DrIlvl~~ 1306 (1343)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=533.08 Aligned_cols=443 Identities=24% Similarity=0.360 Sum_probs=335.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|++.+|+ +.++|+|+||++.+||++|++|+||+|||||+|.|.|.|+|++|+|.++|.
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 588999999985 468999999999999999999999999999999999999999999999994
Q ss_pred EEEEcccccc-cCccHHHHhccCCCCC-------HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 517 AAYVSQSAWI-QSGNIEENILFGSPMD-------KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 517 i~~v~Q~~~l-~~~ti~~Ni~~g~~~~-------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
|+.|.|+.-+ .+-||.|||.+|++.. ..+.++.. ..+ ++.+. ..........+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A--~~~---l~~lg--~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA--REL---LARLG--LDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH--HHH---HHHcC--CCCChhhhhhhCCHHHHHHHHHH
Confidence 7999999775 5789999999997632 22222211 111 12111 11114456677999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh-HHHHhcC
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKY-DDLLQAG 666 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~l~~~~ 666 (1343)
||+..+++|+|||||||+|+.+..+++|+...+...+|.++|+|||+++.+.. ||+|.||+||+.+..++. .++-
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~--- 234 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS--- 234 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC---
Confidence 99999999999999999999999999997654555579999999999998765 999999999999865431 1100
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhhhh
Q 000702 667 TDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRK 746 (1343)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1343)
.+.
T Consensus 235 -----------------------------------------------------------------~~~------------ 237 (500)
T COG1129 235 -----------------------------------------------------------------EDE------------ 237 (500)
T ss_pred -----------------------------------------------------------------HHH------------
Confidence 000
Q ss_pred hhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHHHH
Q 000702 747 KQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALA 826 (1343)
Q Consensus 747 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~ 826 (1343)
+. +.+
T Consensus 238 --lv-------------------~~M------------------------------------------------------ 242 (500)
T COG1129 238 --LV-------------------RLM------------------------------------------------------ 242 (500)
T ss_pred --HH-------------------HHh------------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHHHH
Q 000702 827 FGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVG 906 (1343)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~ 906 (1343)
+|+
T Consensus 243 ---------------------------------------------vGr-------------------------------- 245 (500)
T COG1129 243 ---------------------------------------------VGR-------------------------------- 245 (500)
T ss_pred ---------------------------------------------hCc--------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHHHH
Q 000702 907 IIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLD 986 (1343)
Q Consensus 907 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d 986 (1343)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000702 987 CFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIE 1066 (1343)
Q Consensus 987 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~e 1066 (1343)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhc
Q 000702 1067 RIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1067 Ri~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~r 1146 (1343)
+..+.-++.+ ++ -+..-.++++|++.. ..++|+||++++||++||.|-=|||+|-++++|+|
T Consensus 246 ---~~~~~~~~~~-------~~--~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG 307 (500)
T COG1129 246 ---ELEDLFPEPP-------EE--GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFG 307 (500)
T ss_pred ---chhhhccccc-------cc--CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhC
Confidence 0000000000 00 011224678887753 15899999999999999999999999999999999
Q ss_pred ccCCCcceEEEcCeecCCCChH-HHhhcceeecCCcc----ccCCchhhhcCCC--CCCCHH-HHHHHHHHcCCchHHhc
Q 000702 1147 LIEPACGRIIIDNIDISTIGLH-DLRSRLGIIPQDPN----LFEGTIRCNLDPL--EEHSDR-EIWEALDKSQLGDIVRG 1218 (1343)
Q Consensus 1147 l~~~~~G~I~IdG~di~~i~l~-~LR~~i~iVpQdp~----lF~gTIr~NLdp~--~~~sd~-ei~~aL~~~~L~~~i~~ 1218 (1343)
.-++.+|+|.+||.++.--++. ..+..|+|||-|.- +...+|++|+... ..++.. -+...-++.-..+++.+
T Consensus 308 ~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~ 387 (500)
T COG1129 308 ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRR 387 (500)
T ss_pred CCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHh
Confidence 9999999999999988777665 58899999998874 4456999999632 111100 12222223333344444
Q ss_pred c---cCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccc
Q 000702 1219 K---DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPT 1294 (1343)
Q Consensus 1219 l---p~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t 1294 (1343)
+ ..+.+.++ .+||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.+..
T Consensus 388 l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE 463 (500)
T COG1129 388 LRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE 463 (500)
T ss_pred cCcccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 3 23455666 4799999999999999999999999999999999999999999999865 57999999999999
Q ss_pred cc-ccCEEEEEeCCEEeeecChhH
Q 000702 1295 VI-DSDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1295 i~-~~DrIlvl~~G~ive~g~p~e 1317 (1343)
+. .||||+||.+|+++..=+.++
T Consensus 464 ll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 464 LLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHhhCCEEEEEECCEEEEEecccc
Confidence 87 599999999999987544433
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-57 Score=499.28 Aligned_cols=466 Identities=24% Similarity=0.337 Sum_probs=372.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000702 203 LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWY-LHDIWMLPLQIILALAILYKNVGIA-SVA 280 (1343)
Q Consensus 203 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~~g~~-~l~ 280 (1343)
.+......+....|.|+++|+..+..+..+|.+.--+....+-++.+..+ +..+....+++.+..+++++..|+. +.+
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~ 88 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALT 88 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHH
Confidence 34444556777899999999999888888887766665555556555443 3455556678888888888887754 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHH
Q 000702 281 TLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGV----EFRWLRKALY 356 (1343)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~----e~~~~~~~~~ 356 (1343)
.++.+++++.+...........+++..++-.+-...-.++|-+..++|.|+-|+.+..+..+..+. +.+......+
T Consensus 89 t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 89 TLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555566666666666677889999999999999998777666554433 3332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000702 357 SQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQ 436 (1343)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~ 436 (1343)
+......++. ..+....+.+...+..+.+|.|.+...-++...+..|++.+......+.+++.-.+++.+.+..+...
T Consensus 169 Ln~gQ~~I~~--~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v 246 (497)
T COG5265 169 LNFGQTAIFS--TGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEV 246 (497)
T ss_pred HHHhhHHHHH--HHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhh
Confidence 2222122211 11222334455556678999999999999999999999999999999999999999999999876544
Q ss_pred cccccccCCC-CCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC
Q 000702 437 EDATIVLPRG-MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515 (1343)
Q Consensus 437 ~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 515 (1343)
.+.....+-. ...+.+.|+|++|.|.+ .+|+|+++||++++|+.++|||++|+||||++++|.++|++++|.|.++|
T Consensus 247 ~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~ 324 (497)
T COG5265 247 SDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG 324 (497)
T ss_pred ccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcc
Confidence 3322111111 22346999999999864 57999999999999999999999999999999999999999999999999
Q ss_pred e-------------EEEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 T-------------AAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ~-------------i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
+ ||.|||+..|||+|+..||.+|.| ..+++...+.+++++++.++.+|+|++|.|||+|-.||||+
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 4 899999999999999999999988 46778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
|||||+||+++++|+|++|||+|||||.+|++.| +..++...+|+|.++|+||++++-.||.|+||+||+|+|.|+|+|
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHH
Confidence 9999999999999999999999999999998887 455777789999999999999999999999999999999999999
Q ss_pred HHhcCccHHHHH
Q 000702 662 LLQAGTDFNALV 673 (1343)
Q Consensus 662 l~~~~~~~~~~~ 673 (1343)
|++.++.|.+++
T Consensus 484 ll~~~g~ya~mw 495 (497)
T COG5265 484 LLAAGGLYAEMW 495 (497)
T ss_pred HHHcCChHHHHh
Confidence 999999998876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=553.59 Aligned_cols=469 Identities=20% Similarity=0.244 Sum_probs=367.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 200 VDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIAS 278 (1343)
Q Consensus 200 ~~~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~~~ 278 (1343)
....+.+.-..|-..++++.++-+.++++.+++|.|+|+++.|++.+++... .+..+....++++..++++-....+..
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fl 961 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFL 961 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 3456777778888999999999999999999999999999999999987655 445555555666655555554444544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 279 VATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQ 358 (1343)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~ 358 (1343)
++.+.+.++++.+..++.+..+...+--...+.=-.+.++|.++|+-+|+.|+.|++|.++..+.-+.-.+.. ....
T Consensus 962 i~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~~~ 1038 (1381)
T KOG0054|consen 962 IAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FLSI 1038 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HHHH
Confidence 4444444444444444444444444433344444567899999999999999999999988776544332211 1111
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000702 359 AFITFIF----WSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEE 434 (1343)
Q Consensus 359 ~~~~~~~----~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e 434 (1343)
+.+..+. ....+++.++++.+.....+..++|.+=-++++.-.+..-+..+......+-.-.+|.+|+.+|.+.|+
T Consensus 1039 ~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~ 1118 (1381)
T KOG0054|consen 1039 SANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPS 1118 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCC
Confidence 1111111 111112222222222222222778999889999888999999999999999999999999999999665
Q ss_pred cccccc-cc--cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEE
Q 000702 435 LQEDAT-IV--LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511 (1343)
Q Consensus 435 ~~~~~~-~~--~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i 511 (1343)
+.+... .. .+.-+.++.|+|+|++.+|.++ ..++||||||+|+|||+++|||++|||||||+++|-+..+|.+|+|
T Consensus 1119 E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1119 EAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred CCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence 421111 11 1112356789999999998764 4689999999999999999999999999999999999999999999
Q ss_pred EECC-------------eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCC
Q 000702 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLS 578 (1343)
Q Consensus 512 ~~~g-------------~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 578 (1343)
.+|| +++.+||||.+|+||||.|+==-.++++++++++++.|+|.+.++.+|.|+++.|.|+|.|+|
T Consensus 1198 ~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1198 LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 9998 479999999999999999996555678999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000702 579 GGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 579 gGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 658 (1343)
-||||-+||||||+++++|++|||+|+++|++| ..++++.++...+++|||.|+||++++-++|||+|||+|+|+|.|+
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~T-D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHH-HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCC
Confidence 999999999999999999999999999999999 6677888999899999999999999999999999999999999999
Q ss_pred hHHHHhcCc-cHHHHH
Q 000702 659 YDDLLQAGT-DFNALV 673 (1343)
Q Consensus 659 ~~~l~~~~~-~~~~~~ 673 (1343)
|++|+++++ .|..+.
T Consensus 1357 P~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1357 PAELLSDKDSLFSSLL 1372 (1381)
T ss_pred hHHHHhCCcchHHHHH
Confidence 999997744 443343
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-54 Score=544.26 Aligned_cols=517 Identities=15% Similarity=0.088 Sum_probs=377.6
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWK-----EAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETF-P-HEGYILAGIFFSAKLVETITTRQWYL 198 (1343)
Q Consensus 126 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 198 (1343)
++.++++||+ .++...++.++.+++....|++.+.++|.+.+.+.. . ...+.+++++++..++.++..+...+
T Consensus 82 l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~ 161 (659)
T TIGR00954 82 LLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKE 161 (659)
T ss_pred HHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655 577788888889999999999999999987643311 0 01122233333333444433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000702 199 GVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGI- 276 (1343)
Q Consensus 199 ~~~~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~~g~- 276 (1343)
...++..++...++...|+|....+..++++ ++|++++++++|++.+.+.+. .+..+...++.++.+++.++..+++
T Consensus 162 ~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~ 240 (659)
T TIGR00954 162 LKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSV 240 (659)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 2333344444444444444444444444444 689999999999999987654 5666777777777777777764554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 277 ASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALY 356 (1343)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 356 (1343)
.+++.++.+++...+..++.+++.+..++..+..++..+...|.++|+++||.|+.|+...+++++.-++..+...+...
T Consensus 241 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~ 320 (659)
T TIGR00954 241 GPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIK 320 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677778889999999999999999999999999999999999999998888777665554444444433
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHh-C----CCcCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 357 SQAFITFIFWSS----PIFVAAVTFGTSILL-G----AQLTAGSVLS-AM---ATFRILQEPLRNFPDLVSMMAQTKVSL 423 (1343)
Q Consensus 357 ~~~~~~~~~~~~----~~~~~~~~f~~~~~~-~----~~lt~~~~f~-~l---~l~~~l~~pl~~l~~~~~~~~~a~~s~ 423 (1343)
..+....+.... ...+..+..+..++. . +.+|.|..++ ++ .++..+..|+..+.+.+..++++.++.
T Consensus 321 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~ 400 (659)
T TIGR00954 321 FRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFT 400 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322221111 112222222332332 2 6788887554 33 346677999999999999999999999
Q ss_pred HHHHHhhcccccccc------cccc-----------------cCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCC
Q 000702 424 DRISGFLQEEELQED------ATIV-----------------LPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRG 480 (1343)
Q Consensus 424 ~Ri~~fl~~~e~~~~------~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G 480 (1343)
+|+.++++.++.... .... .........++++|++|.|+. ++++|+|+||++++|
T Consensus 401 ~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~G 478 (659)
T TIGR00954 401 ARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSG 478 (659)
T ss_pred HHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCC
Confidence 999999975432110 0000 000012236999999998753 357999999999999
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--eEEEEcccccccCccHHHHhccCC--------CCCHHHHHHHH
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSAWIQSGNIEENILFGS--------PMDKAKYKKVI 550 (1343)
Q Consensus 481 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~~ti~~Ni~~g~--------~~~~~~~~~~~ 550 (1343)
|+++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|+++++|++|||.++. ..++++.++++
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 558 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999875 699999999999999999999874 24566778889
Q ss_pred HHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEE
Q 000702 551 HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVI 630 (1343)
Q Consensus 551 ~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i 630 (1343)
+.+++.+.++. |.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+. ++. .|+|+|
T Consensus 559 ~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~--~~~tvI 633 (659)
T TIGR00954 559 DNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE--FGITLF 633 (659)
T ss_pred HHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH--cCCEEE
Confidence 99999887777 999999876 5779999999999999999999999999999999999998887654 333 389999
Q ss_pred EEecCCCccccCCEEEEEeC
Q 000702 631 FVTHQVEFLPAADFILVLKE 650 (1343)
Q Consensus 631 ~vtH~~~~l~~~d~i~~l~~ 650 (1343)
+||||++.++.||+|++|++
T Consensus 634 ~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 634 SVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEeCchHHHHhCCEEEEEeC
Confidence 99999999999999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=493.55 Aligned_cols=439 Identities=24% Similarity=0.404 Sum_probs=343.0
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.+++++++..|+ +..+++||||++++||++|++|+||+|||||+++|.|.|+|++|+|.++|+
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 689999999985 467999999999999999999999999999999999999999999999994
Q ss_pred EEEEccccccc-CccHHHHhccCCCC------CHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSPM------DKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 517 i~~v~Q~~~l~-~~ti~~Ni~~g~~~------~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
||.|.|++-++ +.||.|||..|.+- +.. +.++..+.+++ .-...+....||-|+||||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl-----------~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL-----------PVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC-----------CCCccceeecCCcchhHHH
Confidence 79999998764 78999999999863 222 23333333333 2233466778999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
.|-+|||++|++||||||||.|-|...+++|+.+.+....|+|+|+|||+++.+.. ||++.||++|+++..-+ ..
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~-- 225 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PV-- 225 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CC--
Confidence 99999999999999999999999999999998755555679999999999998765 99999999999864211 00
Q ss_pred cCccHHHHHHHHHHhhhhcCCCCCCCCCCcccccccCcccCCCcCCCCCCCCcccccccccCCchhHHHHHHHHHHHhhh
Q 000702 665 AGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRS 744 (1343)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1343)
. + . . .+...+
T Consensus 226 ----------------------~--------~---------~------------t------------~~ela~------- 235 (501)
T COG3845 226 ----------------------A--------E---------T------------T------------EEELAE------- 235 (501)
T ss_pred ----------------------C--------C---------C------------C------------HHHHHH-------
Confidence 0 0 0 0 000000
Q ss_pred hhhhhhHHHHHhcCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCChhHHHHHHHH
Q 000702 745 RKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMA 824 (1343)
Q Consensus 745 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~ 824 (1343)
++
T Consensus 236 ------------------------------------lM------------------------------------------ 237 (501)
T COG3845 236 ------------------------------------LM------------------------------------------ 237 (501)
T ss_pred ------------------------------------Hh------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHHHHHHHHH
Q 000702 825 LAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQL 904 (1343)
Q Consensus 825 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~ 904 (1343)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHHHHHHHHH
Q 000702 905 VGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYL 984 (1343)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~~~~~~~~ 984 (1343)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000702 985 LDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIIS 1064 (1343)
Q Consensus 985 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s 1064 (1343)
+ ...+.
T Consensus 238 -------------------------------------v---G~~v~---------------------------------- 243 (501)
T COG3845 238 -------------------------------------V---GREVV---------------------------------- 243 (501)
T ss_pred -------------------------------------c---CCccc----------------------------------
Confidence 0 00000
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHH
Q 000702 1065 IERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQAL 1144 (1343)
Q Consensus 1065 ~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L 1144 (1343)
.+.+ .++.-|..-.++++|++..-+.+ -+.+++|||+|++||++||.|-.|-|-|-|+.+|
T Consensus 244 ---------~~~~---------~~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eai 304 (501)
T COG3845 244 ---------LRVV---------KPPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304 (501)
T ss_pred ---------cccc---------cCCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHH
Confidence 0000 01112334579999999976543 3579999999999999999999999999999999
Q ss_pred hcccCCCcceEEEcCeec-CCCChHHHhh-cceeecCCcc----ccCCchhhhcCCCCC----------CCHHHHHHHHH
Q 000702 1145 FRLIEPACGRIIIDNIDI-STIGLHDLRS-RLGIIPQDPN----LFEGTIRCNLDPLEE----------HSDREIWEALD 1208 (1343)
Q Consensus 1145 ~rl~~~~~G~I~IdG~di-~~i~l~~LR~-~i~iVpQdp~----lF~gTIr~NLdp~~~----------~sd~ei~~aL~ 1208 (1343)
.|+..|.+|+|.++|.|+ ...+....|+ .+++||.|.+ ..+-|+.+|+-+... .+-.++.+..+
T Consensus 305 sGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~ 384 (501)
T COG3845 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384 (501)
T ss_pred hCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH
Confidence 999999999999999997 6667777654 6999999994 567799999853321 12233333222
Q ss_pred HcCCchHHhc---ccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcE
Q 000702 1209 KSQLGDIVRG---KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCT 1284 (1343)
Q Consensus 1209 ~~~L~~~i~~---lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~T 1284 (1343)
+ .+++ .+.+.++++ .+||||+.|++-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.
T Consensus 385 ~-----li~~fdVr~~~~~~~a----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~A 455 (501)
T COG3845 385 E-----LIEEFDVRAPSPDAPA----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKA 455 (501)
T ss_pred H-----HHHHcCccCCCCCcch----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCE
Confidence 1 1222 134555555 5899999999999999999999999999999999999999999888765 5899
Q ss_pred EEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1285 VCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1285 vI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
|++|+-+|+.+.. ||||.||.+|+++....|++
T Consensus 456 VLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 456 VLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999876 99999999999998888776
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=490.82 Aligned_cols=238 Identities=35% Similarity=0.634 Sum_probs=228.4
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|.|+|+|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.|||+|+..++...+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997655679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCE
Q 000702 1175 GIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1175 ~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~I 1254 (1343)
+||||+|.+|++|+++|++++...+++++|++++.++|.+++.++|.+||+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHHhc
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1255 LlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~~~ 1334 (1343)
|||||||++||+++++.+++.|++.+++||||+||||++++..||||+||++|+++++|+|++|+++ .+.|++|+.+.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999985 589999997765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=469.22 Aligned_cols=258 Identities=22% Similarity=0.354 Sum_probs=220.6
Q ss_pred HHhhhHHHHHHhhcCCCCCCCCCC------C---CCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEE
Q 000702 1060 NKIISIERIYQYSQIPGEAPPVIE------D---SRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIV 1130 (1343)
Q Consensus 1060 ~~~~s~eRi~~~~~~~~e~~~~~~------~---~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIV 1130 (1343)
..+++++|+.+|...+.|.....+ . ...+..||..+.|+|+|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 446677777777766554322111 1 0113469999999999999999765567999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecC--CCChHHHhhcceeecCCccccCCchhhhcCCC---CCCCH
Q 000702 1131 GRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIS--TIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL---EEHSD 1200 (1343)
Q Consensus 1131 GrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~--~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~---~~~sd 1200 (1343)
||||||||||+++|+|+++ |++|+|.|||+|++ ++++..+|++++||||+|.+|++|+++|++.. ..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 45667899999999999999999999999832 23555
Q ss_pred HHH-----HHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000702 1201 REI-----WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275 (1343)
Q Consensus 1201 ~ei-----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~ 1275 (1343)
++. .++++.+++++ ++++.+++.|.+||||||||+|||||++++|+||||||||++||+++.+.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 55677777643 456778899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1276 IRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1276 l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
|++.++++|+|+||||++++.+ ||||+||++|+|+|.|+|+++..++..
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence 9999889999999999999988 999999999999999999999976653
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=440.64 Aligned_cols=193 Identities=22% Similarity=0.349 Sum_probs=160.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|.|.||+|+|.++. .++++++|-|.++++||+|||||+|||||++++.|.+.|..|.|.-.- ..+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccch
Confidence 599999999998764 799999999999999999999999999999999999999999885432 12233
Q ss_pred eecCCc---cccCCchhhhcCC-CC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1176 IIPQDP---NLFEGTIRCNLDP-LE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1176 iVpQdp---~lF~gTIr~NLdp-~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
+.-|.- ..++-|.-+|+.| +. ....+++...|.++||..-.+ +.++ ++||+|||.|+++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPM----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccch----hhcccccchhHHHHHHHhc
Confidence 333433 3455666666643 33 355678889999999975433 3444 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
.|.||||||||++||.+|-..+.++|.+ |. .+||+|+|+...|.+ +++|++.++|.+...
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe-~~-Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE-FP-GGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc-cC-CceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 9999999999999999999999999975 44 499999999999987 999999999998765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=393.02 Aligned_cols=222 Identities=27% Similarity=0.446 Sum_probs=195.9
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecC-CCChHHHhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIS-TIGLHDLRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~-~i~l~~LR~~i 1174 (1343)
-|+++||+.+|+.. .||+|||++|++||.+.||||||||||||+++|.|+-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999854 5999999999999999999999999999999999999999999999998774 33788899999
Q ss_pred eeecCCccccCC-chhhhcCCCC----CCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE----EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~----~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
|+|+|+..||.- |+-+|+.... ..+. +.-.+.|+++||.+....-|. .|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999975 9999996331 2222 234567899999998887774 6899999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
|||.-+|+++++|||||+||+|.-..+.+.+++..+ |.|+|+|||.+....+ +|||+.||+|+|+|.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999988654 6899999999999988 99999999999999999999998876
Q ss_pred c-HHHHHH
Q 000702 1324 S-MFLKLV 1330 (1343)
Q Consensus 1324 ~-~f~~l~ 1330 (1343)
. +-++..
T Consensus 229 ~~R~~~FL 236 (240)
T COG1126 229 SERTRQFL 236 (240)
T ss_pred CHHHHHHH
Confidence 4 344433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=409.80 Aligned_cols=226 Identities=30% Similarity=0.467 Sum_probs=198.8
Q ss_pred EEEEEEEEEEcCC---CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC---hHHH
Q 000702 1097 IELIDLKVRYGEN---LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHDL 1170 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---l~~L 1170 (1343)
|+++||++.|... ...+|+||||+|++||+.||||+||||||||++++.|+-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 346999999999999999999999999999999999999999999999999988876 5567
Q ss_pred hhcceeecCCccccC-CchhhhcC-CCC--CCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1171 RSRLGIIPQDPNLFE-GTIRCNLD-PLE--EHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1171 R~~i~iVpQdp~lF~-gTIr~NLd-p~~--~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
|++||+|+|++.|++ -|+.+|+. |.. ..+.+ .+.+.|+.+||.|.-.+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999998 69999997 332 23444 4677899999988876655 58999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
+|||||..+|+||+.|||||+||++|.+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999988643 37899999999999988 9999999999999999999999
Q ss_pred hcCCc-HHHHHHHHh
Q 000702 1320 EDKSS-MFLKLVTEY 1333 (1343)
Q Consensus 1320 ~~~~~-~f~~l~~~~ 1333 (1343)
.++.. .=++++.+.
T Consensus 231 ~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 231 ANPKHAITQEFIGET 245 (339)
T ss_pred cCcchHHHHHHHHhh
Confidence 98844 445565543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=415.68 Aligned_cols=240 Identities=51% Similarity=0.792 Sum_probs=224.9
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhh
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~ 1172 (1343)
..|.|+++|++++|+....++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45789999999999764456999999999999999999999999999999999999999999999999999998889999
Q ss_pred cceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876545567788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHHH
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~~ 1332 (1343)
++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.+++.|+.++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998777899999999999999999999999999999999999998888889988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=379.83 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=198.9
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCc-----ceEEEcCeecCC--CCh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC-----GRIIIDNIDIST--IGL 1167 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~-----G~I~IdG~di~~--i~l 1167 (1343)
..++++|+++.|+.. .+|+|||++|++++.+|++|||||||||++++|.|+.+..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 469999999999854 59999999999999999999999999999999999999875 999999999976 578
Q ss_pred HHHhhcceeecCCccccCCchhhhcCCCC-------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1168 HDLRSRLGIIPQDPNLFEGTIRCNLDPLE-------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~gTIr~NLdp~~-------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
..||+++|.|+|.|.-|..||++|+.+.. ..-|+-+.++|+++.||+.+... +.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHHH
Confidence 89999999999999999999999997542 12245578899999999998643 33456779999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
||||||||.-+|+||+||||||+||+.+...|.+.|.+..++-||++|||.+.-... +|+...+-.|+++|+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999889999999999988766 9999999999999999999999
Q ss_pred hcCC
Q 000702 1320 EDKS 1323 (1343)
Q Consensus 1320 ~~~~ 1323 (1343)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=409.77 Aligned_cols=193 Identities=22% Similarity=0.301 Sum_probs=166.9
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhc
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~ 1173 (1343)
...+++.+|+|.|.++.++.+++++++++.-+++++||++|+||||+++++.+-.+|.+|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 446999999999999887899999999999999999999999999999999999999999998876 789
Q ss_pred ceeecCCccccCCchhhhc---C----CCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1174 LGIIPQDPNLFEGTIRCNL---D----PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1174 i~iVpQdp~lF~gTIr~NL---d----p~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|++-.|..+=| ..-|. | .++..+++|+.+.|...||..-+... + + ..||||||-|+++|-
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~-----s-i----~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ-----S-I----ASLSGGQKSRVAFAA 495 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc-----c-c----cccCCcchhHHHHHH
Confidence 99999988744 22222 1 12334899999999999987655432 2 2 469999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
....+|.+|||||||.+||.++-..+-++|+. |.| -||+|+|+.+.|.. |+.++|.++|+|.-+
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 99999999999999999999999999999974 654 79999999999976 999999999999863
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=401.97 Aligned_cols=234 Identities=32% Similarity=0.510 Sum_probs=215.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred ecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
+||++.+|+.|+++|+.... ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998543 34566788888889999999999999999888888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHH
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~ 1331 (1343)
||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|+.++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999988778999999999999988999999999999999999999975 677877664
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=381.75 Aligned_cols=217 Identities=29% Similarity=0.471 Sum_probs=196.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+|+|||++|.+ ..+++|+||+|++||.+.++|+|||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999984 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCc--hHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLG--DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|-|..-||.- ||.+|+..-. ..+ ++.+.+.|+.++|. +|..+.|. .|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHHH
Confidence 9999999975 9999996322 233 45577889999996 47766664 68999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccc-cccCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
||..+|+||+||||.++||+-|...+|+-+.+..+ ++|+++|||+++.. +-+|||.||++|+|+.+|+|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999998876543 68999999999875 5599999999999999999999999988
Q ss_pred cHH
Q 000702 1324 SMF 1326 (1343)
Q Consensus 1324 ~~f 1326 (1343)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 777
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=417.42 Aligned_cols=263 Identities=22% Similarity=0.315 Sum_probs=218.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCcceEEEEeeEEEecCC
Q 000702 385 AQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPS 464 (1343)
Q Consensus 385 ~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 464 (1343)
+.+++..+|+.+++|+.+..|+..+|..... ..|+..|+..++.+...... ..+....|+++|++++|..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~- 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN- 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC-
Confidence 5688999999999999999998887765443 56899998776533211111 1122347999999999863
Q ss_pred CCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC---------------eEEEEcccc
Q 000702 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG---------------TAAYVSQSA 524 (1343)
Q Consensus 465 ~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------------~i~~v~Q~~ 524 (1343)
..+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 93 ~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 34579999999999999999999999999999999999997 5799998765 489999999
Q ss_pred cccCccHHHHhccCCCC---C-HH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000702 525 WIQSGNIEENILFGSPM---D-KA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 525 ~l~~~ti~~Ni~~g~~~---~-~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ 596 (1343)
|+|++|++|||.|+..+ + ++ .++++++.|++.+++ ++.++++|.+|||||||||+||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999987532 2 22 256667777765443 467899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 597 illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|+||||||++||+++.+++ .+++..+.+++|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999998875 5677777778999999999999877 999999999999999999998754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=395.88 Aligned_cols=221 Identities=62% Similarity=0.960 Sum_probs=209.2
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|.|+++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999975445699999999999999999999999999999999999999999999999999988888899999
Q ss_pred eeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCE
Q 000702 1175 GIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1175 ~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~I 1254 (1343)
+|+||+|.+|++|+++|++++...+.+++.++++..++.+++..+|.|+++...+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecCh
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1255 LlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p 1315 (1343)
|||||||++||+.+...+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=365.07 Aligned_cols=201 Identities=31% Similarity=0.465 Sum_probs=171.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.|+++|++.+|. +..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999874 46799999999999999999999999999999999999999999999999 2
Q ss_pred EEEEccccccc-CccHHHHhccCCC----CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSP----MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 517 i~~v~Q~~~l~-~~ti~~Ni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
+|+|+|+..|| ..||.|||..+.- .++ ++-.+.++..+|.+-.+. ....|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHH
Confidence 68999998887 5899999998742 222 223334444555444433 456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||||..+|+++++|||||||||+...++.+-.......|.|.|+|||.+.|... ||||+.|++|+|+++|+++++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999998887544445579999999999999976 999999999999999999998765
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=390.12 Aligned_cols=232 Identities=34% Similarity=0.547 Sum_probs=212.4
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+....++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred ecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
+||+|.+|..|+++|+.... ..+.+++.+.++..++.+++..+|.|+++.......+||+|||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998643 34566777888899999999999999999888888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHH
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKL 1329 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l 1329 (1343)
||||||++||+.+...+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.++ .+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 999999999999999999999988788999999999999988999999999999999999999864 4555543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=381.16 Aligned_cols=207 Identities=62% Similarity=0.940 Sum_probs=189.1
Q ss_pred CCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH
Q 000702 1091 WPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL 1170 (1343)
Q Consensus 1091 wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L 1170 (1343)
||..+.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999988888888
Q ss_pred hhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1171 RSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1171 R~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
|+.++|+||+|.+|++|+++|+..+...+++++.++++ +.+....||+||+||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665556666666554 123456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecCh
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p 1315 (1343)
+|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999988778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=405.22 Aligned_cols=224 Identities=29% Similarity=0.451 Sum_probs=194.6
Q ss_pred EEEEEEEEEEcCC--CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---Hh
Q 000702 1097 IELIDLKVRYGEN--LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR 1171 (1343)
|+++||+++|+.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hcceeecCCccccC-CchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1172 SRLGIIPQDPNLFE-GTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~-gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
++|++|||++.+|. .|+++|+... ...+ ++.+.++|+.++|.+...+.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 6999999631 1222 234778899999987655443 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||+.+|+|||||||||+||++|...|.+.|++..+ +.|||+|||+++.+.. ||||++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998654 7899999999999966 99999999999999999999987
Q ss_pred cCCcHH-HHHHH
Q 000702 1321 DKSSMF-LKLVT 1331 (1343)
Q Consensus 1321 ~~~~~f-~~l~~ 1331 (1343)
++...+ ++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 665434 44443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=386.24 Aligned_cols=226 Identities=40% Similarity=0.614 Sum_probs=209.7
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|.|+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 469999999999642 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred eeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1175 GIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1175 ~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
+|+||+|.+|.+|+++|+.... ...++++.++++.+++.+++..+|.|+++.+.....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345677888999999999999999999999888889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1254 ILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
+|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999999888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=380.89 Aligned_cols=213 Identities=32% Similarity=0.516 Sum_probs=188.9
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.++++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+..|.+|+|++||.|+.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999984 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcc-ccCCchhhhcC----C----CCCCC--HH-HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1176 IIPQDPN-LFEGTIRCNLD----P----LEEHS--DR-EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1176 iVpQdp~-lF~gTIr~NLd----p----~~~~s--d~-ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
||||++. -|.-|++|=+. | +...+ |+ .+.+||+.+++.++..+. + ..||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHHH
Confidence 9999975 44558888663 2 22222 33 478899999998886542 2 469999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccc-cccCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||.++|+||+|||||++||....-.|++.+++.. ++.|+|+|.|+++.. ..||++++|++|+++..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 369999999999876 5599999999999999999999985
Q ss_pred c
Q 000702 1321 D 1321 (1343)
Q Consensus 1321 ~ 1321 (1343)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=386.25 Aligned_cols=233 Identities=38% Similarity=0.587 Sum_probs=214.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999754 345677788899999999999999999999998888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHHH
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~~ 1331 (1343)
||||||++||+++...+.+.|++..++.|+|+++|+++.+..|||+++|++|++++.|+++++.+ ..+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHh
Confidence 99999999999999999999988766889999999999998899999999999999999999986 4577777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=367.94 Aligned_cols=227 Identities=28% Similarity=0.440 Sum_probs=189.3
Q ss_pred eEEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC-hHHHhh
Q 000702 1096 TIELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG-LHDLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-l~~LR~ 1172 (1343)
.++++|+++.|+... .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+..... -...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998653 25999999999999999999999999999999999999999999999997765543 335788
Q ss_pred cceeecCCccc-cC--CchhhhcC-CCC----CCCHHHHHHHHHHcCCchH-HhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1173 RLGIIPQDPNL-FE--GTIRCNLD-PLE----EHSDREIWEALDKSQLGDI-VRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1173 ~i~iVpQdp~l-F~--gTIr~NLd-p~~----~~sd~ei~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
.+.+|+|||.- ++ -||++-|. |.. .-..++++++|+.+||.+- ..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999962 21 35555553 322 1234569999999999764 44445 368999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCc--EEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC--TVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~--TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||.-+|++||+|||||+||.-..+.|.+.+.+..+++ |.|+|||++..+.. ||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998876654 99999999999987 99999999999999999999998
Q ss_pred cCCcHHH-HHHHHh
Q 000702 1321 DKSSMFL-KLVTEY 1333 (1343)
Q Consensus 1321 ~~~~~f~-~l~~~~ 1333 (1343)
.+.-.|. .|.+..
T Consensus 232 ~~~h~ytr~Ll~a~ 245 (252)
T COG1124 232 HPSHPYTRELLEAV 245 (252)
T ss_pred CCccHHHHHHHHhh
Confidence 7444454 444443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=362.59 Aligned_cols=226 Identities=31% Similarity=0.507 Sum_probs=199.8
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH---HHh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH---DLR 1171 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~---~LR 1171 (1343)
-.|++++|+++|+.. .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 469999999999754 699999999999999999999999999999999999999999999999999999864 479
Q ss_pred hcceeecCCccccCC-chhhhcC-CCCCC---CHHHH----HHHHHHcCCchH-HhcccCCCCcccccCCCCCChhHHHH
Q 000702 1172 SRLGIIPQDPNLFEG-TIRCNLD-PLEEH---SDREI----WEALDKSQLGDI-VRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~g-TIr~NLd-p~~~~---sd~ei----~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
+++|+++|...||+. ||+||+. |..+| +++++ ...|+.|||..- ....| +.||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999987 9999997 44443 44444 345788999876 33344 5789999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
.+||||+.-+|+||++|||||+||+-+...+-+.|++..+ +.|+++|||+++++.. ||||+++.+|+|+-.|+|+||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999998888876543 7899999999999977 899999999999999999999
Q ss_pred hhcCCcHHHHHHHHh
Q 000702 1319 LEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1319 l~~~~~~f~~l~~~~ 1333 (1343)
.+.++...++.+...
T Consensus 234 ~~sd~P~v~qf~~G~ 248 (263)
T COG1127 234 LASDDPWVRQFFNGI 248 (263)
T ss_pred HhCCCHHHHHHhcCC
Confidence 998888888877643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=384.39 Aligned_cols=233 Identities=36% Similarity=0.616 Sum_probs=211.2
Q ss_pred EEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1097 IELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
|+++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999753 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred eecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCE
Q 000702 1176 IIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1176 iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~I 1254 (1343)
|+||+|.+|..|+++|+... .....+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999754 23456677888888999999999999999998888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHH
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1255 LlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~ 1330 (1343)
|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+++++.+. .+..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999987678999999999999988999999999999999999999864 45555544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=378.80 Aligned_cols=219 Identities=33% Similarity=0.520 Sum_probs=201.2
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|.|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999975334699999999999999999999999999999999999999999999999999888877788999
Q ss_pred eeecCCccccCCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1175 GIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1175 ~iVpQdp~lF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
+++||+|.+|..|+++|+.... ..+.+++.++++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997542 345567888999999999999999999999988889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeec
Q 000702 1254 ILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g 1313 (1343)
+|||||||++||.++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=387.13 Aligned_cols=222 Identities=28% Similarity=0.396 Sum_probs=200.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.|+++|++++|++ +..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 4899999999863 24579999999999999999999999999999999999998 799999988 38
Q ss_pred EEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000702 518 AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597 (1343)
Q Consensus 518 ~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~i 597 (1343)
+|+||+|++|++|+++|+....+++++++.++++.+++...+..+|.+++|.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964445667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHH
Q 000702 598 YLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675 (1343)
Q Consensus 598 llLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 675 (1343)
+||||||++||+.+.+.+. +.+....+++|+|+|||+++.+..||+|++|++|++++.|+++++++....+.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~-~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIR-KTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 9999999999999977665 4555555689999999999988889999999999999999999999876666666543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=389.14 Aligned_cols=216 Identities=26% Similarity=0.438 Sum_probs=196.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+.+|++.. +|+|+||+|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998643 999999999999999999999999999999999999999999999999999999887 6899
Q ss_pred eecCCccccCC-chhhhcCCCCC-------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLEE-------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~~-------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
+|+|++.||.. ||++||.+.-+ .-++++.++++..++.+.+++.|. .||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999976 99999974321 235678899999999999988875 689999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
|+++|++++||||.|+||......+...|++..+ +.|+|.|||+....+. +|||.||.+|+|.+.|+|.|+..++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999998888877543 5799999999877655 999999999999999999999999888
Q ss_pred HH
Q 000702 1325 MF 1326 (1343)
Q Consensus 1325 ~f 1326 (1343)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 77
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=376.36 Aligned_cols=215 Identities=28% Similarity=0.470 Sum_probs=196.0
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecC-CCChHHHhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIS-TIGLHDLRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~-~i~l~~LR~~i 1174 (1343)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.|++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 78999999999999999999999999999999999999999999999999998 47889999999
Q ss_pred eeecCCc--cccCCchhhhcCCCC---CCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDP--NLFEGTIRCNLDPLE---EHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp--~lF~gTIr~NLdp~~---~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
|+|+|+| .+|..||.+.+.+.. ..+.+ .+.++|+.+++.++....| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999997542 23443 4778999999988754444 57999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--cEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~--~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
.+|..+|+|||||||||+||+...+.+.+.+++..++ .|+|+|||+++.+.. |||++||++|+++.+|+|+++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999999999999999987654 699999999999988 9999999999999999999999754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=372.80 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=183.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+.. +||+||||+|++||.+||+||||||||||+++++|++.|++|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 49999999999999999999999999999999999999999999999998766432 57899
Q ss_pred eecCCcc---ccCCchhhhcCCCC-----------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1176 IIPQDPN---LFEGTIRCNLDPLE-----------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1176 iVpQdp~---lF~gTIr~NLdp~~-----------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
||||... -|.-||++-+.... ..+.+++.+||+++++.++..+ +++ .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHH
Confidence 9999663 47789998775321 1224779999999999987543 453 599999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
+.|||||+++|++|+|||||+++|+.++..|.+.|++..+ ||||++|+|+++.+.. ||+|+.|. +++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999998765 8999999999999876 99999997 6788999999998
Q ss_pred hc
Q 000702 1320 ED 1321 (1343)
Q Consensus 1320 ~~ 1321 (1343)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=397.86 Aligned_cols=219 Identities=28% Similarity=0.386 Sum_probs=185.8
Q ss_pred CCceEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----
Q 000702 1093 ENGTIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI---- 1165 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i---- 1165 (1343)
....|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345699999999997432 3699999999999999999999999999999999999999999999999998753
Q ss_pred ------------ChHHHhhcceeecCCc--cccCCchhhhcCCCC---CCCHHH----HHHHHHHcCCchHHhcccCCCC
Q 000702 1166 ------------GLHDLRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSDRE----IWEALDKSQLGDIVRGKDQKLE 1224 (1343)
Q Consensus 1166 ------------~l~~LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd~e----i~~aL~~~~L~~~i~~lp~gLd 1224 (1343)
....+|++++||||+| .+|++|+++|+.... ..++++ +.++++.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 3567899999999998 689999999996431 223333 344555555531
Q ss_pred cccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-ccCEEE
Q 000702 1225 TPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI-DSDLVL 1302 (1343)
Q Consensus 1225 t~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrIl 1302 (1343)
......+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||||+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 12344567899999999999999999999999999999999999999999998753 4789999999999875 599999
Q ss_pred EEeCCEEeeecChhHHhhc
Q 000702 1303 VLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1303 vl~~G~ive~g~p~eLl~~ 1321 (1343)
||++|++++.|+|+++.++
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=380.75 Aligned_cols=211 Identities=34% Similarity=0.521 Sum_probs=186.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCcceEEEcCeecCCCC--hHH
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI-----EPACGRIIIDNIDISTIG--LHD 1169 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~-----~~~~G~I~IdG~di~~i~--l~~ 1169 (1343)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999753 5999999999999999999999999999999999999 999999999999998876 567
Q ss_pred HhhcceeecCCccccCCchhhhcCCCC---C-C----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1170 LRSRLGIIPQDPNLFEGTIRCNLDPLE---E-H----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~gTIr~NLdp~~---~-~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
+|++++|+||++.+|..|+++|+.... . . .++++.++++.+++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 888999999999999889999996421 1 1 13457888999998766544321 35799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
++|||||+++|++|||||||++||+++...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987666899999999998865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=414.81 Aligned_cols=199 Identities=25% Similarity=0.325 Sum_probs=168.3
Q ss_pred CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCcceEEEcCeecCCCChHHHhhcceeecCCcc-ccC
Q 000702 1109 NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPN-LFE 1185 (1343)
Q Consensus 1109 ~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~--~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~-lF~ 1185 (1343)
+....|+|||=-++||--.|++|.||||||||++.|.+-.. .-+|.|+|||.+..+ +..++++|||.|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999998654 347999999998765 788999999999885 444
Q ss_pred CchhhhcCC------CCCCCHHH----HHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC-CE
Q 000702 1186 GTIRCNLDP------LEEHSDRE----IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA-RI 1254 (1343)
Q Consensus 1186 gTIr~NLdp------~~~~sd~e----i~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~-~I 1254 (1343)
-||||-|.+ -.+.+++| +.++.+..+|.++- |..||.-|..||..||.||.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 599999852 12344444 56777777776653 45688888999999999999999999999 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccc--cccCEEEEEe-CCEEeeecChhH
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTV--IDSDLVLVLS-DGRVAEFDTPGR 1317 (1343)
Q Consensus 1255 LlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti--~~~DrIlvl~-~G~ive~g~p~e 1317 (1343)
|.||||||+||.++...|.+.+|+.. .|+||++.=|.++.. +.+||++.|+ .|+.|-+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999865 589999999999864 5699999997 578999988654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=381.77 Aligned_cols=212 Identities=32% Similarity=0.460 Sum_probs=185.9
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh---HHHhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL---HDLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l---~~LR~~ 1173 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999987764 567889
Q ss_pred ceeecCCccccCC-chhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1244 (1343)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.++..+.+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 999999642 1122 234677888888866543322 4799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1245 ARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998643 7899999999998876 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=345.26 Aligned_cols=207 Identities=27% Similarity=0.399 Sum_probs=187.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---Hhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR~~ 1173 (1343)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|+||||||||+++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999987 77999999999999999999999999999999999999999999999999999998665 8999
Q ss_pred ceeecCCccccCC-chhhhcCC-CC--CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDP-LE--EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp-~~--~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
||+|+||.-|... |+.||+.+ .. ..+ .+.+.++|+.+||.+....+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999988765 99999973 21 122 3457889999999999998885 6899999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccC-EEEEEeCCEEeeecCh
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSD-LVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D-rIlvl~~G~ive~g~p 1315 (1343)
||+..+|++||-||||.+||+++...|++.+.+.- .|.||++.||+.+.+.++. |++.+++|+++....+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998754 4899999999999998854 7999999999987654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=361.50 Aligned_cols=204 Identities=30% Similarity=0.444 Sum_probs=177.8
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---H-
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---L- 1170 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---L- 1170 (1343)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|.++-.|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999997543 36999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hhcceeecCCccccCC-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHh-cccCCCCcccccCCCCCChhHHHH
Q 000702 1171 RSRLGIIPQDPNLFEG-TIRCNLDP---LEEH----SDREIWEALDKSQLGDIVR-GKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1171 R~~i~iVpQdp~lF~g-TIr~NLdp---~~~~----sd~ei~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
|++||+|+|+..|++. |++||+.. +... ..+...+.++.+||.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999999876 99999972 2222 2345677788889986655 334 4789999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEee
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive 1311 (1343)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++..+ ++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999998743 689999999999999999999999999543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=377.83 Aligned_cols=223 Identities=31% Similarity=0.475 Sum_probs=194.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998888888899999
Q ss_pred eecCCccccCCchhhhcCCCC---CCCHHHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcC
Q 000702 1176 IIPQDPNLFEGTIRCNLDPLE---EHSDREIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ 1251 (1343)
Q Consensus 1176 iVpQdp~lF~gTIr~NLdp~~---~~sd~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~ 1251 (1343)
|+||+|.+|..|+++|+.... ...++++.+.++..++. +.... ...+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR-----------DVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997432 22345677888888885 33222 3357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHHHH
Q 000702 1252 ARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328 (1343)
Q Consensus 1252 ~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~ 1328 (1343)
|++|||||||++||.++.+.+.+.|++.. .++|||++||+++.+.. ||||++|++|++++.|++++++.++...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998764 37899999999999875 9999999999999999999998765545555
Q ss_pred HHH
Q 000702 1329 LVT 1331 (1343)
Q Consensus 1329 l~~ 1331 (1343)
.+.
T Consensus 230 ~~~ 232 (241)
T PRK14250 230 LFI 232 (241)
T ss_pred HHH
Confidence 443
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=379.66 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=193.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCcceEEEcCeecCCCChHHHhh
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE---PACGRIIIDNIDISTIGLHDLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~l~~LR~ 1172 (1343)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.|+...+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999974 369999999999999999999999999999999999985 68999999999999888888899
Q ss_pred cceeecCCccccCCchhhhcCCCC---C------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1173 RLGIIPQDPNLFEGTIRCNLDPLE---E------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~gTIr~NLdp~~---~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+++..+ ..+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996431 1 1234577889999997665432 23345789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
||||++++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987778999999999998865 9999999999999999999998654
Q ss_pred C
Q 000702 1323 S 1323 (1343)
Q Consensus 1323 ~ 1323 (1343)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=355.06 Aligned_cols=221 Identities=26% Similarity=0.407 Sum_probs=193.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC---hHHHhh
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHDLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---l~~LR~ 1172 (1343)
.|+++||+..|+.+ ..+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999744 56999999999999999999999999999999999999999999999999999988 667899
Q ss_pred cceeecCCccccCC-chhhhcCC------------CCCCCH---HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCCh
Q 000702 1173 RLGIIPQDPNLFEG-TIRCNLDP------------LEEHSD---REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~g-TIr~NLdp------------~~~~sd---~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
+||+|+|+|.|-.. |+-+|+.. ++-++. ....+||+++|+.+..... .++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999998865 89999731 233333 3478899999998876543 257999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
||+||++|||||.++|+|++-|||||+||+++.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999865 47899999999999876 9999999999999999
Q ss_pred ChhHHhhcCCcHHHHHHH
Q 000702 1314 TPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1314 ~p~eLl~~~~~~f~~l~~ 1331 (1343)
++.||-+ ..+...+.
T Consensus 231 ~~~el~~---~~~~~iYg 245 (258)
T COG3638 231 PASELTD---EALDEIYG 245 (258)
T ss_pred ChhhhhH---HHHHHHhc
Confidence 9999643 34555554
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=385.70 Aligned_cols=215 Identities=29% Similarity=0.425 Sum_probs=191.4
Q ss_pred eEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1096 TIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
.|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred eeecCCc--cccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDP--NLFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp--~lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+++||+| .++..|+++|+.... ..+ ++.+.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 356779999997431 122 345788999999977665443 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988653 7899999999999888999999999999999999998764
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=395.08 Aligned_cols=224 Identities=27% Similarity=0.432 Sum_probs=192.4
Q ss_pred EEEEEEEEEEcC--CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---Hh
Q 000702 1097 IELIDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR 1171 (1343)
|+++||+++|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hcceeecCCccccC-CchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1172 SRLGIIPQDPNLFE-GTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~-gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
++|+||||++.+|. .|+++|+... ...+ ++++.++++.+++.++..+.| .+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-----------AQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999986 6999999632 1222 245677888888876544332 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998653 7899999999999876 99999999999999999999987
Q ss_pred cCCcHHH-HHHH
Q 000702 1321 DKSSMFL-KLVT 1331 (1343)
Q Consensus 1321 ~~~~~f~-~l~~ 1331 (1343)
++...+. .++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 6544343 3443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=393.20 Aligned_cols=218 Identities=23% Similarity=0.356 Sum_probs=192.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 4699999999999999999999999999999999999999999999999999987765 47899
Q ss_pred eecCCccccC-CchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFE-GTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~-gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
+|||++.+|. .|+++|+.... ..+ .+++.++++.++|.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997431 122 245778899999988776655 3789999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987654 6899999999998765 999999999999999999999988766
Q ss_pred HHH
Q 000702 1325 MFL 1327 (1343)
Q Consensus 1325 ~f~ 1327 (1343)
.|.
T Consensus 229 ~~~ 231 (356)
T PRK11650 229 TFV 231 (356)
T ss_pred HHH
Confidence 553
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=372.75 Aligned_cols=217 Identities=30% Similarity=0.463 Sum_probs=197.6
Q ss_pred CCceEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHh
Q 000702 1093 ENGTIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR 1171 (1343)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999753 23699999999999999999999999999999999999999999999999999888777888
Q ss_pred hcceeecCCccccCCchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1172 SRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
++++|+||+|.+|.+|+++|++.. .....+++++..+..++.+++..++.|+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999853 3334556677777788889999998899988888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEE
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~i 1309 (1343)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=392.18 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=192.6
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.+ |++|
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999974 4599999999999999999999999999999999999999999999999999887654 5789
Q ss_pred eeecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
++|||++.+|.. |+++|+.+.- ..+ ++++.++++.+++.++..+.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 9999997421 122 346788999999977655443 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
||+++|++|+||||||+||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||+||++|++++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 7899999999999855 99999999999999999999998887
Q ss_pred cHH
Q 000702 1324 SMF 1326 (1343)
Q Consensus 1324 ~~f 1326 (1343)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 655
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=371.64 Aligned_cols=210 Identities=25% Similarity=0.358 Sum_probs=183.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++||+++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753246999999999999999999999999999999999999999999999999987643 567889999
Q ss_pred ecCCcccc-CCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLF-EGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF-~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+... +.+ .+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-------KRA----RTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-------Chh----hhCCHHHHHHHHHHHHH
Confidence 99999998 579999986321 112 245778888888865443 222 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999875 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=384.30 Aligned_cols=215 Identities=31% Similarity=0.488 Sum_probs=186.3
Q ss_pred eEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC--hHHH
Q 000702 1096 TIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG--LHDL 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--l~~L 1170 (1343)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999997532 36999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hhcceeecCCc--cccCCchhhhcCCCC---CCCH----HHHHHHHHHcCCc--hHHhcccCCCCcccccCCCCCChhHH
Q 000702 1171 RSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSD----REIWEALDKSQLG--DIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1171 R~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd----~ei~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
|++|+||||+| .+|..|+++|+.... ..++ +.+.++++.++|. ++. |. ....||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~~----~~~~LSgGq~ 150 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-------DK----SPFELSGGQK 150 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-------cC----CcccCCHHHH
Confidence 89999999998 578899999996421 2233 3467888888885 222 22 2357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-ccCEEEEEeCCEEeeecChh
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~ 1316 (1343)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|+++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 789999999999985 49999999999999999999
Q ss_pred HHhhc
Q 000702 1317 RLLED 1321 (1343)
Q Consensus 1317 eLl~~ 1321 (1343)
++++.
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=376.90 Aligned_cols=222 Identities=24% Similarity=0.349 Sum_probs=191.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~l~ 1168 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999974 3599999999999999999999999999999999999997 48999999999864 3445
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---C-C----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---E-H----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~-~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||+|.+|..|+++|+.... . . .++.+.++++.+++.+.+. ..+|+. ..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~~----~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNTN----ALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhCC----cccCCHHHHH
Confidence 6788999999999999999999996421 1 1 1345778888888865432 334443 4689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999865 9999999999999999999998
Q ss_pred hcCCcHH
Q 000702 1320 EDKSSMF 1326 (1343)
Q Consensus 1320 ~~~~~~f 1326 (1343)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654433
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=376.40 Aligned_cols=220 Identities=26% Similarity=0.397 Sum_probs=191.2
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--CC
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--IG 1166 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~ 1166 (1343)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999974 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHHhhcceeecCCccccCCchhhhcCCCC----CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1167 LHDLRSRLGIIPQDPNLFEGTIRCNLDPLE----EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1167 l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~----~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
...+|++++|+||+|.+|..|+++|+.... ..+ +++++++++.+++.+.+.. ...+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 667899999999999999999999997421 122 2457888999888654322 2233456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
|||++|||||+++|+||||||||++||.++.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcC
Q 000702 1318 LLEDK 1322 (1343)
Q Consensus 1318 Ll~~~ 1322 (1343)
+.+.+
T Consensus 242 ~~~~~ 246 (260)
T PRK10744 242 IFTKP 246 (260)
T ss_pred HHhCC
Confidence 98654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=374.62 Aligned_cols=221 Identities=29% Similarity=0.455 Sum_probs=190.6
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-----cceEEEcCeecCCC--ChHH
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA-----CGRIIIDNIDISTI--GLHD 1169 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~i--~l~~ 1169 (1343)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999999763 4556
Q ss_pred HhhcceeecCCccccCCchhhhcCCC---CC-CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1170 LRSRLGIIPQDPNLFEGTIRCNLDPL---EE-HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~gTIr~NLdp~---~~-~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
.|++++|+||++.+|..|+++|+... .. .+ ++++.++++.+++.+.+.. .++ ....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RLH----DSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hhh----CCcccCCHHHHHH
Confidence 78899999999999999999999632 11 12 2457788999998744421 122 2335899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+++++.+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999998865 99999999999999999999987
Q ss_pred cCCcHH
Q 000702 1321 DKSSMF 1326 (1343)
Q Consensus 1321 ~~~~~f 1326 (1343)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 654444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=381.06 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=192.1
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eecCCc--cccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDP--NLFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp--~lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|+||+| .++..|+++||.... ..+ ++++.++++.++|.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 466789999997421 122 244778889999987766554 379999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||+.+|+||||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998654 7899999999999988999999999999999999998753
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=344.56 Aligned_cols=472 Identities=21% Similarity=0.288 Sum_probs=340.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChhhhHHHHhhhhhhhcccchhhHHHH
Q 000702 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGF 897 (1343)
Q Consensus 818 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G~ilnR~s~D~~~id~~l~~~~~~~ 897 (1343)
++..|.++.....+.+.+.......++...-.+++.++.++++.+|+.-+++...++++.++++|+..|. .-...+..+
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~ 128 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPEL 128 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHH
Confidence 4444444444445555666777788899999999999999999999999999999999999999999998 333445668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhccchheeecCcHHHH
Q 000702 898 ASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRF 977 (1343)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~r~l~rl~~~~~sp~~~~~~etl~G~~tIraf~~~~~~ 977 (1343)
.+..+..+++.+.+++.+|++.++.+..+++.++.+...++.--+-.+...+....+..+++..++|.+..+..+...++
T Consensus 129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~ 208 (546)
T COG4615 129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY 208 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence 88888899999999999999887776666655554433333333333334445567889999999999999987755444
Q ss_pred HHHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000702 978 MKRNLY------LLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRW 1051 (1343)
Q Consensus 978 ~~~~~~------~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~ 1051 (1343)
...... .-+...+..........|-++.+-.+.+.++.+. ...+.-+...+.......+.+-+++..+
T Consensus 209 ~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la------l~~~w~st~~a~tivlvlLflr~pL~s~ 282 (546)
T COG4615 209 VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA------LSLGWASTNVAATIVLVLLFLRTPLLSA 282 (546)
T ss_pred HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhhccchhhHHHHHHHHHHHHhhHHHHH
Confidence 332211 1111222222222344454443322222211111 1111111111111222233456778888
Q ss_pred HHHHHHHHHHhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEc
Q 000702 1052 ILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVG 1131 (1343)
Q Consensus 1052 ~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVG 1131 (1343)
+.....+-...++.+++.++...|..+. .....+.++| ..||++||.|.|.+.. --+..||++|++||.|=|+|
T Consensus 283 vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG 356 (546)
T COG4615 283 VGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIG 356 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEEC
Confidence 8888888888999999998875332211 1111222234 4699999999998763 35788999999999999999
Q ss_pred CCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcC
Q 000702 1132 RTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQ 1211 (1343)
Q Consensus 1132 rTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~ 1211 (1343)
.|||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|+-|-+||+.++- |.+..+.+.+..-|++..
T Consensus 357 ~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 357 GNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLE 432 (546)
T ss_pred CCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997652 333466666766666655
Q ss_pred CchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEec
Q 000702 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIA 1289 (1343)
Q Consensus 1212 L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~Ia 1289 (1343)
+.....-..+.+ ++ ..||-|||.|+++--|++-+.+|+++||=-+--|+.=.+...+.+--.. .|+||+.||
T Consensus 433 l~~ktsl~d~~f-s~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 433 LAHKTSLNDGRF-SN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred HhhhhcccCCcc-cc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 544332221111 11 3699999999999999999999999999999999999998877665433 489999999
Q ss_pred cCcccccccCEEEEEeCCEEeee
Q 000702 1290 HRIPTVIDSDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1290 Hrl~ti~~~DrIlvl~~G~ive~ 1312 (1343)
|+-.-...+||++.|++|+++|.
T Consensus 507 HDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 507 HDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999987
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=380.53 Aligned_cols=212 Identities=27% Similarity=0.404 Sum_probs=188.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred eecCCc--cccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDP--NLFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp--~lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 678899999997421 122 345788899999977665544 369999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHh
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
||+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+. .||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 3789999999999985 49999999999999999997653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=362.87 Aligned_cols=207 Identities=27% Similarity=0.372 Sum_probs=174.2
Q ss_pred EEEEeeEEEecCC--CCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------
Q 000702 452 IQIENAEFCWYPS--SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 515 (1343)
|+++++++.|+.. ....+|+||||+|++||+.+|+|.||+|||||++++.|+-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999988752 134699999999999999999999999999999999999999999999999
Q ss_pred --eEEEEcccccccC-ccHHHHhccCCCC----CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 516 --TAAYVSQSAWIQS-GNIEENILFGSPM----DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 516 --~i~~v~Q~~~l~~-~ti~~Ni~~g~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+||+++|++-+++ .||.+||.|..+. ..+..++|.+.+.+. |+....+....+|||||||||+||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV--------gL~dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV--------GLSDKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc--------CChhhhccCchhcCcchhhHHHHH
Confidence 3899999998876 8999999997552 233444455444332 222233456789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
|||..+|+||+.|||||||||++.+.|++.+.+-. .-|-|+++|||.++.++. ||||.+|++|+++++|+..++..+.
T Consensus 154 RALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 154 RALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999987543322 238999999999999987 9999999999999999999987653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=372.45 Aligned_cols=213 Identities=25% Similarity=0.429 Sum_probs=184.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999974 469999999999999999999999999999999999999999999999999876553 367899
Q ss_pred eecCCccccC-CchhhhcCCCCC---C----C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1176 IIPQDPNLFE-GTIRCNLDPLEE---H----S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1176 iVpQdp~lF~-gTIr~NLdp~~~---~----s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
|+||+|.+|. .|+++|+..... . . ++++.++++..++.+...+.+ .+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----------AQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 9999999986 599999974211 1 1 234667788888865544322 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999987643 6899999999998765 99999999999999999999986
Q ss_pred cCC
Q 000702 1321 DKS 1323 (1343)
Q Consensus 1321 ~~~ 1323 (1343)
++.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=375.50 Aligned_cols=219 Identities=25% Similarity=0.388 Sum_probs=189.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~l~ 1168 (1343)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 589999999999875 3455
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC----CC----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL----EE----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~----~~----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||++.+|.+|+++|+... .. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 778899999999999999999999632 11 123467788899888665432 123344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCC
Q 000702 1320 EDKS 1323 (1343)
Q Consensus 1320 ~~~~ 1323 (1343)
+.+.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=369.30 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=176.8
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH---HHhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH---DLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~---~LR~~ 1173 (1343)
|+++|++++|+++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999975434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred ceeecCCccccC-CchhhhcCCC----C---CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLFE-GTIRCNLDPL----E---EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF~-gTIr~NLdp~----~---~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++|+||+|.+|. .|+++|+... . ...++++.++++.+++.++....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999987 5999999632 1 112456888999999877655443 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEE
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~i 1309 (1343)
|||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 37899999999999875 899999999975
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.40 Aligned_cols=212 Identities=27% Similarity=0.452 Sum_probs=182.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcce
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i~ 1175 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999988876654 56799
Q ss_pred eecCCccccCC-chhhhcCCCC----CC-------------CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChh
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLE----EH-------------SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~----~~-------------sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1237 (1343)
|+||+|.+|.+ |+++|+.... .. ..+.+.++++..++.+.. ......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-----------DRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-----------hCChhhCCHH
Confidence 99999999987 9999986321 10 122355666666664432 2233579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecCh
Q 000702 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1238 QrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p 1315 (1343)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998764 57899999999999866 999999999999999999
Q ss_pred hHHhhc
Q 000702 1316 GRLLED 1321 (1343)
Q Consensus 1316 ~eLl~~ 1321 (1343)
+++.++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=333.12 Aligned_cols=210 Identities=27% Similarity=0.426 Sum_probs=186.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|.+++|.++|... + =.++++|++||+|||+|+||||||||++++.||..|.+|+|.|+|+|....++.+ +-+++
T Consensus 2 l~L~~V~~~y~~~-~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSM 75 (231)
T ss_pred ccccceEEeeCcc-e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhh
Confidence 5678999999753 2 2478999999999999999999999999999999999999999999998877764 56999
Q ss_pred ecCCccccCC-chhhhcCCC----CCC---CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL----EEH---SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~----~~~---sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
++||..||.- ||++|+..+ -.. ..+.+..++.++||.++.+++|. .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999976 999999743 222 34568999999999999999985 5799999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++++|||+..|+-+++++..+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999888887765 46799999999998866 99999999999999999999997554
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=374.23 Aligned_cols=211 Identities=29% Similarity=0.455 Sum_probs=184.0
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC---hHHHhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHDLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---l~~LR~~ 1173 (1343)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999752 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred ceeecCCccccC-CchhhhcCCCC---------------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChh
Q 000702 1174 LGIIPQDPNLFE-GTIRCNLDPLE---------------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237 (1343)
Q Consensus 1174 i~iVpQdp~lF~-gTIr~NLdp~~---------------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1237 (1343)
++++||++.+|. .|+++|+.... ...++++.++++..++.+.... .+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----------RADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----------CcccCCHH
Confidence 999999999887 69999996310 1123456777888887654322 33579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCccccc-ccCEEEEEeCCEEeeecC
Q 000702 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1238 QrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~ 1314 (1343)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 3789999999999998 499999999999999999
Q ss_pred hhHHh
Q 000702 1315 PGRLL 1319 (1343)
Q Consensus 1315 p~eLl 1319 (1343)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99974
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=390.43 Aligned_cols=216 Identities=24% Similarity=0.363 Sum_probs=192.0
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999887764 67899
Q ss_pred eecCCccccC-CchhhhcCCC-C--CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFE-GTIRCNLDPL-E--EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~-gTIr~NLdp~-~--~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
+|||++.+|. .|+++|+.+. . ..+ ++.+.++++..+|.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999742 1 122 345788899998877665444 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+++++|+|+++.+++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987654 6899999999998765 999999999999999999999988776
Q ss_pred HH
Q 000702 1325 MF 1326 (1343)
Q Consensus 1325 ~f 1326 (1343)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 66
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=362.82 Aligned_cols=199 Identities=27% Similarity=0.372 Sum_probs=182.8
Q ss_pred EEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhc
Q 000702 1097 IELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~ 1173 (1343)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997642 3699999999999999999999999999999999999999999999999 6
Q ss_pred ceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1174 i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
|+|+||+|.+|++|+++|+.+....++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765566777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHhcC-CcEEEEeccCcccccccCEEEEEeCCE
Q 000702 1254 ILVLDEATASVDTATDNLIQK-IIRTEFK-DCTVCTIAHRIPTVIDSDLVLVLSDGR 1308 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~-~l~~~~~-~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1308 (1343)
+++|||||++||.++.+.+.+ .+++..+ +.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 5665533 689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=375.30 Aligned_cols=465 Identities=21% Similarity=0.212 Sum_probs=329.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccChh------hhHHHHhhhhhhhcccch
Q 000702 818 LLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAG------RILNRVSIDQSVVDLDIP 891 (1343)
Q Consensus 818 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~vl~~p~~ff~~~~~G------~ilnR~s~D~~~id~~l~ 891 (1343)
.+.+|..++.+...+...+.++...+..+--.-+-+.++++-+... .||.....| ..=+|+..|+...-...-
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 4566777777777777778887777777777777777777777666 555444333 233688888876665544
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000702 892 FRLGGFASTTIQLVGIIGVMTM--------------VTWQVLLL-VIPM----AVACLWMQKYYMASSRELVRIVSIQKS 952 (1343)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-~ip~----~~~~~~~~~~~~~~~r~l~rl~~~~~s 952 (1343)
.....++.+++++++..+++.- ..|.+++. ++.. .++.+++.+...+-.-+..+.|..-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 4455555555555544443331 11112211 1111 122234555555555666666666665
Q ss_pred hHHHHHHHhhccchheeecCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCH
Q 000702 953 PIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVL-LVSFPHGAIDP 1031 (1343)
Q Consensus 953 p~~~~~~etl~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~~~~ 1031 (1343)
-+. -.-+..+.|-.|+.|+...++.....+.-...+......+.++...-...+-+.+.+-.++ .-.+..|.++-
T Consensus 247 ~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 443 3344566677788777776666666665555555555555444444433333222111111 12245788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc------CCCCCCCCCCCCCCCCCCCCCceEEEEEEEEE
Q 000702 1032 SMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQ------IPGEAPPVIEDSRPPSSWPENGTIELIDLKVR 1105 (1343)
Q Consensus 1032 ~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~------~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~ 1105 (1343)
|.+..+.....++...+.|++..+..+..-..++.|+.++.+ .+.+.+.... .+....-.....|+|+|+++.
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 998888888899999999999999999999999999999974 2222221100 000000001468999999999
Q ss_pred EcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccC
Q 000702 1106 YGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFE 1185 (1343)
Q Consensus 1106 Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~ 1185 (1343)
-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+.+..+|+|.+-. -+++-++||.|++-.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87655 689999999999999999999999999999999999999999986641 145889999999999
Q ss_pred CchhhhcC-CCC--CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000702 1186 GTIRCNLD-PLE--EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATA 1262 (1343)
Q Consensus 1186 gTIr~NLd-p~~--~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs 1262 (1343)
||+||-|. |.. +++|+|+.++|.+|+|.+++.++.+- +. =..-||+||||||++||.||++|++++||||||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 99999997 443 38999999999999999999887432 21 234699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEe
Q 000702 1263 SVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLS 1305 (1343)
Q Consensus 1263 ~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~ 1305 (1343)
+||.+++..+.+.++++.+++|+|.|+||.....-.++.+-++
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999977776677766554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=390.86 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=182.5
Q ss_pred CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH----hhcceeecCCccccCC
Q 000702 1111 PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL----RSRLGIIPQDPNLFEG 1186 (1343)
Q Consensus 1111 ~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L----R~~i~iVpQdp~lF~g 1186 (1343)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+...+ |++++||||++.+|..
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 000702 1187 -TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258 (1343)
Q Consensus 1187 -TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLD 1258 (1343)
|+++|+.... ..+ .+++.++|+.++|.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999996321 122 355788899999977765544 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHH
Q 000702 1259 EATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1259 EaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f 1326 (1343)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998764 37899999999998654 99999999999999999999998765444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=380.70 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=196.3
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++||+.+|+ ...+++|+||+|++||.+.++|||||||||++++|.||..|++|+|.+||.||..++++. +.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--ccc
Confidence 4699999999998 346999999999999999999999999999999999999999999999999999999874 789
Q ss_pred eeecCCccccCC-chhhhcCCCCC----CCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE----HSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~----~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++|+|+..||.- ||++|+.+.-. ..+ +.+.++|+.++|.++-.+.|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999975 99999975422 233 367899999999998877764 6899999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccc-cccCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
|||..+|++|+||||-|+||..-...++.-+++..+ +.|.|.|||+-+.. .-+|||.||++|+|...|+|+|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999999988887543 78999999998765 569999999999999999999999999
Q ss_pred CcHHH
Q 000702 1323 SSMFL 1327 (1343)
Q Consensus 1323 ~~~f~ 1327 (1343)
...|-
T Consensus 229 ~~~fV 233 (352)
T COG3842 229 ATRFV 233 (352)
T ss_pred chHHH
Confidence 88773
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=381.67 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=184.4
Q ss_pred eEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----ChH
Q 000702 1096 TIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI----GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~l~ 1168 (1343)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997432 3699999999999999999999999999999999999999999999999999754 345
Q ss_pred HHhhcceeecCCc--cccCCchhhhcCCCC---CCCH----HHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhH
Q 000702 1169 DLRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSD----REIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd----~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
.+|++|+||||+| .+|..|+++|+.... ..+. +.+.++++.++|. +.. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM-----------SQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh-----------hCCcccCCHHH
Confidence 7899999999998 588899999996421 1232 3355667777664 222 22346899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCccccc-ccCEEEEEeCCEEeeecCh
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p 1315 (1343)
|||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|++
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999764 4799999999999985 5999999999999999999
Q ss_pred hHHhhc
Q 000702 1316 GRLLED 1321 (1343)
Q Consensus 1316 ~eLl~~ 1321 (1343)
+++.++
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 998864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=371.69 Aligned_cols=214 Identities=30% Similarity=0.460 Sum_probs=186.6
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---Hh
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR 1171 (1343)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 26999999999999999999999999999999999999999999999999998776543 47
Q ss_pred hcceeecCCccccC-CchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1172 SRLGIIPQDPNLFE-GTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~-gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+.+ .+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 88999999999997 5999999631 1112 346788888888876554432 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998643 7899999999999865 99999999999999999999875
Q ss_pred c
Q 000702 1321 D 1321 (1343)
Q Consensus 1321 ~ 1321 (1343)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=381.08 Aligned_cols=214 Identities=26% Similarity=0.390 Sum_probs=185.0
Q ss_pred EEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC----CChHH
Q 000702 1097 IELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST----IGLHD 1169 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~----i~l~~ 1169 (1343)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.+++. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997532 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhcceeecCCc--cccCCchhhhcCCCC---CCCH----HHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhHH
Q 000702 1170 LRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSD----REIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1170 LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd----~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
+|++++||+|+| .+|..|+.+|+.... ..+. +++.++++.+++. ++..+ ...+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK-----------SPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccC-----------CcccCCHHHH
Confidence 899999999998 789999999996431 1222 3467778888884 33322 2357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhH
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~e 1317 (1343)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998754 3789999999999885 499999999999999999999
Q ss_pred Hhhc
Q 000702 1318 LLED 1321 (1343)
Q Consensus 1318 Ll~~ 1321 (1343)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=373.04 Aligned_cols=221 Identities=25% Similarity=0.420 Sum_probs=189.8
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred ecCCccccC-CchhhhcCCCC---CCC----HHHHHHHHHHcCCch--HHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1177 IPQDPNLFE-GTIRCNLDPLE---EHS----DREIWEALDKSQLGD--IVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~--~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+ ... ....+||||||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFAD-----------RYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh-----------cChhhCCHHHHHHHHHHH
Confidence 999999996 69999996421 112 345677888888764 322 233679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
|++++|++|||||||++||+++...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 99999999999999999999999999999998643 7899999999998755 99999999999999999999976543
Q ss_pred c-HHHHH
Q 000702 1324 S-MFLKL 1329 (1343)
Q Consensus 1324 ~-~f~~l 1329 (1343)
. .++.+
T Consensus 229 ~~~~~~~ 235 (242)
T cd03295 229 NDFVAEF 235 (242)
T ss_pred ChHHHHH
Confidence 3 33444
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=373.39 Aligned_cols=211 Identities=30% Similarity=0.426 Sum_probs=183.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh---HHHhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL---HDLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l---~~LR~~ 1173 (1343)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999722 469999999999999999999999999999999999999999999999999987654 346889
Q ss_pred ceeecCCccccC-CchhhhcCCCC---------------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChh
Q 000702 1174 LGIIPQDPNLFE-GTIRCNLDPLE---------------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237 (1343)
Q Consensus 1174 i~iVpQdp~lF~-gTIr~NLdp~~---------------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1237 (1343)
++|+||++.+|. .|+++|+.... ...++++.++++..++.+.... ...+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----------RADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHH
Confidence 999999999886 59999996311 0113457778888887654432 23579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecC
Q 000702 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1238 QrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~ 1314 (1343)
||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998643 7899999999999865 99999999999999999
Q ss_pred hhHHh
Q 000702 1315 PGRLL 1319 (1343)
Q Consensus 1315 p~eLl 1319 (1343)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=353.68 Aligned_cols=216 Identities=27% Similarity=0.389 Sum_probs=182.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.+++++|+.+|+. ..||+|+||+|++||.|+||||||||||||++++.|+..|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999986 4699999999999999999999999999999999999999999999999988443 45799
Q ss_pred eecCCccccCC-chhhhcCCCCCC-------CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLEEH-------SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~~~-------sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
||+|++.||.= |+++|+...-+. ..+...++|+.+||.+|-.+.|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999985 999999643211 23458889999999999888774 689999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-ccCEEEEEeC--CEE---eeec--ChhH
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DSDLVLVLSD--GRV---AEFD--TPGR 1317 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~--G~i---ve~g--~p~e 1317 (1343)
|+.+|+||+||||.++||..|...+|+.+.+..+ ++||++|||+++... -+|||+||.+ |+| ++.+ .|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 9999999999999999999999999999887654 589999999998754 5999999999 544 3333 333
Q ss_pred HhhcCCcHHHHHHHH
Q 000702 1318 LLEDKSSMFLKLVTE 1332 (1343)
Q Consensus 1318 Ll~~~~~~f~~l~~~ 1332 (1343)
...+..|..+.++
T Consensus 224 --~~~~~~f~~l~~~ 236 (248)
T COG1116 224 --IRGDPEFLELREE 236 (248)
T ss_pred --cccChHHHHHHHH
Confidence 2234566665543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=372.75 Aligned_cols=224 Identities=31% Similarity=0.438 Sum_probs=193.1
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCCChHHH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTIGLHDL 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~l~~L 1170 (1343)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999975 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hhcceeecCCcccc-CCchhhhcCCCC---C------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1171 RSRLGIIPQDPNLF-EGTIRCNLDPLE---E------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1171 R~~i~iVpQdp~lF-~gTIr~NLdp~~---~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
|++|+|+||+|.+| ..|+++|+.... . ..++++.++++.+++.+.+. ..+|..+ .+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHHH
Confidence 99999999999755 579999996321 1 11346788999999865432 1234443 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|+|+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999986 49999999999999999999998
Q ss_pred hcCCcHHHH
Q 000702 1320 EDKSSMFLK 1328 (1343)
Q Consensus 1320 ~~~~~~f~~ 1328 (1343)
+++...+.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14247 234 TNPRHELTE 242 (250)
T ss_pred cCCccHHHH
Confidence 765444433
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=375.22 Aligned_cols=222 Identities=24% Similarity=0.394 Sum_probs=191.6
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--C
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--I 1165 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i 1165 (1343)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 4568999999999974 3699999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHHHhhcceeecCCccccCCchhhhcCCCC---CC--C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCCh
Q 000702 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH--S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~--s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
+...+|++++++||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 4567889999999999999999999996321 11 1 3456888999998664431 12233468999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecCh
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p 1315 (1343)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999865 899999999999999999
Q ss_pred hHHhhcCC
Q 000702 1316 GRLLEDKS 1323 (1343)
Q Consensus 1316 ~eLl~~~~ 1323 (1343)
+++..++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99986543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=374.84 Aligned_cols=222 Identities=24% Similarity=0.451 Sum_probs=190.5
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--C
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--I 1165 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i 1165 (1343)
....|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999975 359999999999999999999999999999999999987 589999999999863 4
Q ss_pred ChHHHhhcceeecCCccccCCchhhhcCCCC---CC---CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH---SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~---sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
+..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+.. .+|. ...+||+|||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~----~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLNE----SGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhCC----CcccCCHHHH
Confidence 5677889999999999999999999997432 11 13456778888887543321 1233 3468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeC-----------C
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSD-----------G 1307 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~-----------G 1307 (1343)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||||++|++ |
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999999987667899999999998865 999999996 6
Q ss_pred EEeeecChhHHhhcCC
Q 000702 1308 RVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1308 ~ive~g~p~eLl~~~~ 1323 (1343)
+++|.|+++++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 241 YLVEFNETKKIFNSPK 256 (269)
T ss_pred eEEEeCCHHHHHhCcC
Confidence 7999999999987553
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=354.93 Aligned_cols=190 Identities=35% Similarity=0.445 Sum_probs=161.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------eEEEEcc
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------TAAYVSQ 522 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~~v~Q 522 (1343)
.+.+++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4789999998853 6899999999999999999999999999999999999999999999988 4799999
Q ss_pred ccccc-CccHHHHhccCCCCC-------HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 523 SAWIQ-SGNIEENILFGSPMD-------KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 523 ~~~l~-~~ti~~Ni~~g~~~~-------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
++-++ --||+||+.||.+.. .++.++.++..+|...-+. ....|||||||||||||||..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~-----------~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDK-----------YPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhc-----------CccccChHHHHHHHHHHHHhcC
Confidence 97765 479999999997642 2345566666666554444 4468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCcc-ccCCEEEEEeC--CeEE
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFL-PAADFILVLKE--GRII 654 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l-~~~d~i~~l~~--G~i~ 654 (1343)
|++|+|||||+|||+.|..++-+.+++.+. .++|+++|||+++.. --+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999998888666555443 479999999999875 45999999998 4553
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=387.29 Aligned_cols=216 Identities=26% Similarity=0.432 Sum_probs=190.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999975 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred eecCCccccCC-chhhhcCCCC-------CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLE-------EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~-------~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
||||++.+|.. |+++|+.... ..+ ++++.++|+.+++.++..+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 9999997421 112 345778899999877655443 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998654 6899999999998765 99999999999999999999998
Q ss_pred cCCcHH
Q 000702 1321 DKSSMF 1326 (1343)
Q Consensus 1321 ~~~~~f 1326 (1343)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 776544
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=373.87 Aligned_cols=219 Identities=30% Similarity=0.440 Sum_probs=188.9
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecC--CCChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIS--TIGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~--~i~l~ 1168 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhhcceeecCCccccCC-chhhhcCCC---CCC--C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1169 DLRSRLGIIPQDPNLFEG-TIRCNLDPL---EEH--S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~g-TIr~NLdp~---~~~--s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
.+|++++++||+|.+|.+ |+++|+... ... . ++++.++++..++.+.+.. .++ ....+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLN----DYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhc----cChhhCCHHH
Confidence 788999999999999976 999999632 111 1 2456788888887654322 122 3346899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
|||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987677999999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000702 1318 LLEDKS 1323 (1343)
Q Consensus 1318 Ll~~~~ 1323 (1343)
+.+++.
T Consensus 235 ~~~~~~ 240 (253)
T PRK14267 235 VFENPE 240 (253)
T ss_pred HHhCCC
Confidence 986543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.72 Aligned_cols=219 Identities=24% Similarity=0.282 Sum_probs=194.7
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhc
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~ 1173 (1343)
.+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 3569999999951 3599999999999999999999999999999999999999999999998 3
Q ss_pred ceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1174 LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1174 i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
++|+||++.+|.+|+++|+.......+.++.++++.+++.+.+..+|.++++++.+.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998643444556778888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhcCCcHHHHHH
Q 000702 1254 ILVLDEATASVDTATDNLIQKI-IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~~-l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l~ 1330 (1343)
||||||||++||+++...+.+. ++...+++|||+|||+++.+..||+|++|++|+++++|+++++.+. ...|.+-+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 9999999999999999988765 4555567999999999999988999999999999999999999864 34454333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=375.74 Aligned_cols=215 Identities=28% Similarity=0.440 Sum_probs=189.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999744456999999999999999999999999999999999999999999999999998877788899999
Q ss_pred eecCCc--cccCCchhhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDP--NLFEGTIRCNLDPL---EEHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp--~lF~gTIr~NLdp~---~~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|+||+| .++..|+++|+... ...+.+ .+.+++++.++.++..+.+ .+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 45577999999642 122333 3567788888876654433 579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 4899999999999888999999999999999999998764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.94 Aligned_cols=202 Identities=25% Similarity=0.399 Sum_probs=175.9
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998654 34678999
Q ss_pred ecCCccccC-CchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFE-GTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.++..+.+ .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 59999996321 111 345778888888876654433 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
+++|++|||||||++||+++...+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999998765 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=378.24 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=186.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecC--CCChHHHhhc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIS--TIGLHDLRSR 1173 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~--~i~l~~LR~~ 1173 (1343)
-|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 49999999999633 45999999999999999999999999999999999999999999999999984 3445678999
Q ss_pred ceeecCCc--cccCCchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHH
Q 000702 1174 LGIIPQDP--NLFEGTIRCNLDPL---EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244 (1343)
Q Consensus 1174 i~iVpQdp--~lF~gTIr~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1244 (1343)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.++|.++..+ ...+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhC-----------CcccCCHHHHHHHHH
Confidence 99999998 57889999999642 12232 346777888888654332 236899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1245 ARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||||+.+|+||||||||++||+++...+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988754 789999999999987 5999999999999999999999863
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=387.45 Aligned_cols=218 Identities=25% Similarity=0.420 Sum_probs=192.7
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCc--ceEEEcCeecCCCChHHHh
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC--GRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~--G~I~IdG~di~~i~l~~LR 1171 (1343)
.|.|+++||+++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|++.|++ |+|.+||.++...+.. +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 367999999999975 359999999999999999999999999999999999999999 9999999999876653 5
Q ss_pred hcceeecCCccccCC-chhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1172 SRLGIIPQDPNLFEG-TIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~g-TIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
++|++|+|++.+|.. |+++|+.+. ...+ ++.+.++++.++|.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 689999999999976 999999632 1223 235778899999987766555 378999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK---DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987654 6899999999998765 9999999999999999999999
Q ss_pred hcCCcHH
Q 000702 1320 EDKSSMF 1326 (1343)
Q Consensus 1320 ~~~~~~f 1326 (1343)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8876655
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=382.47 Aligned_cols=225 Identities=25% Similarity=0.376 Sum_probs=190.7
Q ss_pred eEEEEEEEEEEcCC-----------CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC
Q 000702 1096 TIELIDLKVRYGEN-----------LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-----------~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~ 1164 (1343)
-|+++|++++|+.. ...+++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhhcceeecCCc--ccc-CCchhhhcCC----C-CCCCH----HHHHHHHHHcCCch-HHhcccCCCCcccc
Q 000702 1165 IGLHD---LRSRLGIIPQDP--NLF-EGTIRCNLDP----L-EEHSD----REIWEALDKSQLGD-IVRGKDQKLETPVL 1228 (1343)
Q Consensus 1165 i~l~~---LR~~i~iVpQdp--~lF-~gTIr~NLdp----~-~~~sd----~ei~~aL~~~~L~~-~i~~lp~gLdt~v~ 1228 (1343)
++.++ +|++|+||||+| .+| ..||.+|+.. + ...+. +.+.++++.+++.+ ...+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87544 678999999999 477 4799999852 1 12332 34567788888843 2222
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEe
Q 000702 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLS 1305 (1343)
Q Consensus 1229 e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~ 1305 (1343)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2357999999999999999999999999999999999999999999987643 7899999999999976 99999999
Q ss_pred CCEEeeecChhHHhhcCCcHHHH-HHH
Q 000702 1306 DGRVAEFDTPGRLLEDKSSMFLK-LVT 1331 (1343)
Q Consensus 1306 ~G~ive~g~p~eLl~~~~~~f~~-l~~ 1331 (1343)
+|+|+|.|+++++++++...|.+ ++.
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 99999999999999876555544 443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=368.48 Aligned_cols=208 Identities=26% Similarity=0.372 Sum_probs=181.1
Q ss_pred eEEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---H
Q 000702 1096 TIELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---L 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---L 1170 (1343)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hcceeecCCccccCC-chhhhcCC---CCCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1171 R-SRLGIIPQDPNLFEG-TIRCNLDP---LEEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1171 R-~~i~iVpQdp~lF~g-TIr~NLdp---~~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
| ++++|+||+|.+|.+ |+++|+.. ..... ++++.++++..++.+...+. ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999976 99999863 11111 24577888888886554332 25799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccccCEEEEEeCCEEeeecC
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~ 1314 (1343)
++||||++.+|+||||||||++||+++...+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4789999999999999999999999999998775
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=368.33 Aligned_cols=235 Identities=38% Similarity=0.679 Sum_probs=202.5
Q ss_pred HHHHHhhcccccccccccccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcC
Q 000702 424 DRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 424 ~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 503 (1343)
+.+.+.|..+..+.+.. +.......++++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENNDR---KHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhccccccccc---ccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666554332221 122334579999999852 4699999999999999999999999999999999999
Q ss_pred ccCCCcEEEECCeEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 504 IPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 504 ~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
++|++|+|.++|.++|++|++++++.|++||+.++....+.++.+.++++++.+.+..+|.+.++.+++++.+|||||||
T Consensus 87 ~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~q 166 (282)
T cd03291 87 LEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRA 166 (282)
T ss_pred CCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHH
Confidence 99999999999999999999999999999999998655555667778888888888899999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|++||||++.+|+++||||||++||+.+.+.+++.++....+++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999998877765555555689999999999998889999999999999999999987
Q ss_pred hcC
Q 000702 664 QAG 666 (1343)
Q Consensus 664 ~~~ 666 (1343)
...
T Consensus 247 ~~~ 249 (282)
T cd03291 247 SLR 249 (282)
T ss_pred hcc
Confidence 543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=377.25 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=187.2
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH----hhc
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL----RSR 1173 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L----R~~ 1173 (1343)
.++|++.+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888864 358999999999999999999999999999999999999999999999999988765543 467
Q ss_pred ceeecCCccccC-CchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLFE-GTIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF~-gTIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++|+||++.+|. .|+++|+... ... .++++.++++.+++.++....| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 6999999631 111 2345778899999877665544 36999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999987643 7899999999998865 9999999999999999999998766
Q ss_pred CcHHH
Q 000702 1323 SSMFL 1327 (1343)
Q Consensus 1323 ~~~f~ 1327 (1343)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 55444
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=389.43 Aligned_cols=220 Identities=27% Similarity=0.459 Sum_probs=194.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCccc-cCCchhhhcCCCC-----------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1176 IIPQDPNL-FEGTIRCNLDPLE-----------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1176 iVpQdp~l-F~gTIr~NLdp~~-----------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
++||++.+ |+.|+++|+.... ....+.+.++++.+++.++..+. + .+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-------~----~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-------V----TSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-------h----hhCCHHHHHHHH
Confidence 99999987 6779999996421 11234588999999998765432 2 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||||+++|+||+|||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999865 47899999999999954 999999999999999999999863
Q ss_pred CCcHHHHHH
Q 000702 1322 KSSMFLKLV 1330 (1343)
Q Consensus 1322 ~~~~f~~l~ 1330 (1343)
..+.+++
T Consensus 230 --~~l~~~~ 236 (402)
T PRK09536 230 --DTLRAAF 236 (402)
T ss_pred --HHHHHHh
Confidence 3455554
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=386.68 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=192.9
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..++++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999974 3599999999999999999999999999999999999999999999999999887764 4689
Q ss_pred eeecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
++|+|++.+|.. |+++|+.+.- ..+ ++++.++++.+++.++..+.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999966 9999997421 122 235778899999988776665 368999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998654 7899999999998765 99999999999999999999998876
Q ss_pred cHH
Q 000702 1324 SMF 1326 (1343)
Q Consensus 1324 ~~f 1326 (1343)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 555
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=367.04 Aligned_cols=211 Identities=27% Similarity=0.390 Sum_probs=182.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999964 36999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred ecCCccc-cCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNL-FEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~l-F~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||++.+ +..|+++|+.... ..+ ++++.+.++..++.+.. + ....+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERA-------D----DKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-------c----CChhhCCHHHHHHHHHHHHH
Confidence 9999987 4679999996431 122 23456677777765432 2 23357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999865 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=378.62 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=184.3
Q ss_pred eEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC--------
Q 000702 1096 TIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST-------- 1164 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~-------- 1164 (1343)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997542 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHHhhcceeecCCc--cccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCc-hHHhc
Q 000702 1165 ----------------IGLHDLRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHS----DREIWEALDKSQLG-DIVRG 1218 (1343)
Q Consensus 1165 ----------------i~l~~LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~-~~i~~ 1218 (1343)
.+...+|++|+||||+| .+|..|+++||.+.. ..+ ++++.++++.++|. ++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13456789999999987 688889999997431 222 34567888888885 44332
Q ss_pred ccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-
Q 000702 1219 KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI- 1296 (1343)
Q Consensus 1219 lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~- 1296 (1343)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 162 -----------~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 162 -----------SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred -----------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 235799999999999999999999999999999999999999999998764 3789999999999875
Q ss_pred ccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1297 DSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1297 ~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
.||||++|++|++++.|+|+++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 4999999999999999999998864
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=389.11 Aligned_cols=216 Identities=24% Similarity=0.370 Sum_probs=189.6
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999999876653 56899
Q ss_pred eecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
||||++.+|.. |+++|+.... ..+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999997421 122 245788899999876655443 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
|+++|++|||||||++||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987643 7899999999998765 999999999999999999999987665
Q ss_pred HH
Q 000702 1325 MF 1326 (1343)
Q Consensus 1325 ~f 1326 (1343)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 54
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=365.58 Aligned_cols=212 Identities=25% Similarity=0.441 Sum_probs=178.9
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcce
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i~ 1175 (1343)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999974 359999999999999999999999999999999999999999999999999988876654 67799
Q ss_pred eecCCccccCC-chhhhcCCCCC-CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHh
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLEE-HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~~-~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1249 (1343)
|+||++.+|.+ |+++|+..... .. .+++.++++..+ .++..+++ ...+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~~----~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRKQ----LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhhC----chhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964321 11 122334444431 11222333 34679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1250 KQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1250 ~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++|++|||||||++||.++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998765 47899999999998766 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=352.06 Aligned_cols=178 Identities=34% Similarity=0.552 Sum_probs=166.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999976434699999999999999999999999999999999999999999999999998776 5678899999
Q ss_pred ecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILl 1256 (1343)
+||+|.+|+.|+++|+ ..+||+|||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCEEeeec
Q 000702 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1257 LDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g 1313 (1343)
|||||++||..+.+.+.+.|++..+++|+|+++|+++.+..|||+++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999877789999999999999889999999999998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=380.03 Aligned_cols=226 Identities=25% Similarity=0.378 Sum_probs=190.1
Q ss_pred eEEEEEEEEEEcCC--------CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh
Q 000702 1096 TIELIDLKVRYGEN--------LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL 1167 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~--------~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l 1167 (1343)
.|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhhcceeecCCcc--ccC-CchhhhcC-C---CCCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCC
Q 000702 1168 H---DLRSRLGIIPQDPN--LFE-GTIRCNLD-P---LEEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1168 ~---~LR~~i~iVpQdp~--lF~-gTIr~NLd-p---~~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1233 (1343)
. .+|++|++|||||. ++. -|+.+|+. + ....+ .+.+.++|+.++|.+. .++... ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~p----~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRYP----HM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCCC----cc
Confidence 4 46789999999994 554 38888874 1 11112 2457888999998532 223322 57
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEe
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310 (1343)
Q Consensus 1234 LSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~iv 1310 (1343)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ ++|+|+|||+++.+.. ||||+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987643 7899999999999975 9999999999999
Q ss_pred eecChhHHhhcCCcHHHH-HHH
Q 000702 1311 EFDTPGRLLEDKSSMFLK-LVT 1331 (1343)
Q Consensus 1311 e~g~p~eLl~~~~~~f~~-l~~ 1331 (1343)
|.|+++++++++..-|.+ |+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 999999999876554544 444
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=372.83 Aligned_cols=221 Identities=24% Similarity=0.396 Sum_probs=189.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCCCC--hHH
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDISTIG--LHD 1169 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i~--l~~ 1169 (1343)
-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999964 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhhcceeecCCccccCCchhhhcCCC---CC------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1170 LRSRLGIIPQDPNLFEGTIRCNLDPL---EE------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~gTIr~NLdp~---~~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+.. .+...+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGD-------RLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhh-------HhhcChhhCCHHHHH
Confidence 78899999999999999999999632 11 123457788899888654321 223344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987778999999999999875 9999999999999999999998
Q ss_pred hcCCcHH
Q 000702 1320 EDKSSMF 1326 (1343)
Q Consensus 1320 ~~~~~~f 1326 (1343)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7765544
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=338.92 Aligned_cols=506 Identities=16% Similarity=0.145 Sum_probs=347.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
+..++|.+++.++....+.+...+... .++-.+-+++.+.+........+.+++++..++.+. ........+|.
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~---is~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSL---ISQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 456788899888877777666655443 333333344322221111111122222222222221 11223345677
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIAT 285 (1343)
Q Consensus 206 ~ir~~L~~~i~~K~l~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~l~~~~~~ 285 (1343)
+.-..++..+-+|++.-+....++.+++.++..++.|+..+.-.+..+..+..+.+-++.++..|++..+..+.+.++++
T Consensus 78 ~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 78 HFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77778888999999999999999999999999999999999866667777777777777788888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH-
Q 000702 286 IISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWED--RYRIQLE-EMRGVEFRWLRKALYSQAFI- 361 (1343)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~--~~~~~i~-~~r~~e~~~~~~~~~~~~~~- 361 (1343)
++.+..+.+...+..+...+..+.-|+..+..+.++.|-|.++.+.-.. .+.+.+. ..++.+- ...+...+.
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~ 233 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHH
Confidence 7777777777777777777888889999999999999999999876432 1222211 1121111 111112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 000702 362 TFIFWSSPIFVAAVTFGTSILLG-AQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDAT 440 (1343)
Q Consensus 362 ~~~~~~~~~~~~~~~f~~~~~~~-~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~e~~~~~~ 440 (1343)
....|...++.+++....|+... +--+...+.|+...+-.++.|+.++...++.+..|.++++||.++-..|+...-..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 11223333333344333333322 11223355555555566889999999999999999999999999866554322111
Q ss_pred cccCCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCeE---
Q 000702 441 IVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--- 517 (1343)
Q Consensus 441 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i--- 517 (1343)
.+ +.+ +-..++++|+.|+|.+. .+-+.-||++|++||++-|+|.||||||||+++|.|++.|++|+|.+||+.
T Consensus 314 ~q-~~p-~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 PQ-AFP-DWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred CC-cCC-cccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 11 111 12369999999998643 378899999999999999999999999999999999999999999999952
Q ss_pred ----------EEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 518 ----------AYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 518 ----------~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
+-|+-|-|+|+.++- +.. ..++.+++-++...+..-.+ +.+|--+ ...||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHH
Confidence 445556666654431 112 34555555555555543322 2222111 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEecCCCccccCCEEEEEeCCeEEEe
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT-ALANKTVIFVTHQVEFLPAADFILVLKEGRIIQA 656 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~ 656 (1343)
+--|+..+.|||+|||--+--||+=.+..++..+-. ...|||++.|||+-.+...|||++.+++|++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999877777765533 3369999999999999999999999999999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=374.21 Aligned_cols=216 Identities=27% Similarity=0.438 Sum_probs=191.6
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCc---ceEEEcCeecCCCChHHHh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC---GRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~---G~I~IdG~di~~i~l~~LR 1171 (1343)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999997544469999999999999999999999999999999999999988 8999999999887777889
Q ss_pred hcceeecCCc--cccCCchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1172 SRLGIIPQDP--NLFEGTIRCNLDPL---EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1172 ~~i~iVpQdp--~lF~gTIr~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
++++|+||+| .++..|+++|+.+. ...+. +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999999 46688999999742 12333 34778899999987665544 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhh
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
+|||||+.+|++|||||||++||..+...+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|++++++.
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988653 789999999999998899999999999999999999875
Q ss_pred c
Q 000702 1321 D 1321 (1343)
Q Consensus 1321 ~ 1321 (1343)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=365.58 Aligned_cols=202 Identities=30% Similarity=0.438 Sum_probs=175.3
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH----H
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD----L 1170 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~----L 1170 (1343)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997531 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hhcceeecCCccccCC-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1171 RSRLGIIPQDPNLFEG-TIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1171 R~~i~iVpQdp~lF~g-TIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+...+.+ .+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP-----------SELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh-----------hhcCHHHHHHH
Confidence 6789999999999986 999999642 111 1345778888888866544322 57999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEE
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~i 1309 (1343)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=370.18 Aligned_cols=220 Identities=25% Similarity=0.404 Sum_probs=189.0
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcc---cCC--CcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL---IEP--ACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl---~~~--~~G~I~IdG~di~~i--~l~ 1168 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999975 3599999999999999999999999999999999997 344 589999999999764 345
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC---CC-----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL---EE-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~---~~-----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||+|.+|.+|+++|+... .. ..++++.++++.+++.+.+... ....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDK-------LKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhh-------hhCCcccCCHHHHH
Confidence 778899999999999999999999631 11 1234577888888886554321 22344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999998
Q ss_pred hcCCc
Q 000702 1320 EDKSS 1324 (1343)
Q Consensus 1320 ~~~~~ 1324 (1343)
+++..
T Consensus 234 ~~~~~ 238 (250)
T PRK14245 234 TNPEK 238 (250)
T ss_pred cCCCC
Confidence 76543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=371.16 Aligned_cols=220 Identities=26% Similarity=0.419 Sum_probs=191.0
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--CCh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--IGL 1167 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~l 1167 (1343)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999964 469999999999999999999999999999999999997 579999999999864 345
Q ss_pred HHHhhcceeecCCccccCCchhhhcCCC-C--C-C----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1168 HDLRSRLGIIPQDPNLFEGTIRCNLDPL-E--E-H----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~gTIr~NLdp~-~--~-~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
..+|+.++|+||+|.+|.+|+++|+... . . . .++++.++++.+++.+.+.. ........||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6778999999999999999999999642 1 1 1 23457778889988755432 23344568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999999
Q ss_pred hhcCC
Q 000702 1319 LEDKS 1323 (1343)
Q Consensus 1319 l~~~~ 1323 (1343)
.+.+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 86543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=370.76 Aligned_cols=218 Identities=28% Similarity=0.413 Sum_probs=188.3
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC-------
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG------- 1166 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~------- 1166 (1343)
++.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999974 35999999999999999999999999999999999999999999999999986431
Q ss_pred ------hHHHhhcceeecCCccccCC-chhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCC
Q 000702 1167 ------LHDLRSRLGIIPQDPNLFEG-TIRCNLDPL----EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231 (1343)
Q Consensus 1167 ------l~~LR~~i~iVpQdp~lF~g-TIr~NLdp~----~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1231 (1343)
...+|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 34678899999999999975 999999631 111 1345778888888866531 1223
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEE
Q 000702 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309 (1343)
Q Consensus 1232 ~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~i 1309 (1343)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998764 37999999999999986 999999999999
Q ss_pred eeecChhHHhhcCC
Q 000702 1310 AEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1310 ve~g~p~eLl~~~~ 1323 (1343)
++.|+++++.+.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986543
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=373.30 Aligned_cols=223 Identities=20% Similarity=0.342 Sum_probs=191.0
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH---HHhh
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH---DLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~---~LR~ 1172 (1343)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999876643 3577
Q ss_pred cceeecCCccccCC-chhhhcCCC----CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1173 RLGIIPQDPNLFEG-TIRCNLDPL----EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~g-TIr~NLdp~----~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
+++|+||++.+|.+ |+++|+... ...+. +.+.++++.+++.+.... .+ .+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~----~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-------MP----SELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-------Ch----hhCCHHHHHHHH
Confidence 89999999999986 999999631 11222 346667888887654332 22 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998643 6899999999999876 99999999999999999999987
Q ss_pred cCCcHHHHHHH
Q 000702 1321 DKSSMFLKLVT 1331 (1343)
Q Consensus 1321 ~~~~~f~~l~~ 1331 (1343)
++...++.++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 65555566654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=370.49 Aligned_cols=223 Identities=24% Similarity=0.380 Sum_probs=189.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~l~ 1168 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999974 369999999999999999999999999999999999997 479999999999864 3445
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---CC-----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH-----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~-----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.+++++... ..++ ....+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNLD----RNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHhc----cChhhCCHHHHH
Confidence 6788999999999999999999997421 11 1245667788888753221 1223 234689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987777899999999999876 9999999999999999999998
Q ss_pred hcCCcHHH
Q 000702 1320 EDKSSMFL 1327 (1343)
Q Consensus 1320 ~~~~~~f~ 1327 (1343)
..+.-.|.
T Consensus 235 ~~~~~~~~ 242 (251)
T PRK14251 235 IAPKKQIT 242 (251)
T ss_pred hCCCCHHH
Confidence 65543343
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=373.81 Aligned_cols=215 Identities=25% Similarity=0.378 Sum_probs=190.1
Q ss_pred eEEEEEEEEEEcCC-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1096 TIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
-|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999888888889999
Q ss_pred eeecCCc--cccCCchhhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDP--NLFEGTIRCNLDPL---EEHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp--~lF~gTIr~NLdp~---~~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+|+||+| .++..|+.+|+... ...+++ .+.++++.+++.++....| ..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46788999999742 123333 3567888888876654322 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987754 7899999999999988999999999999999999998864
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=377.49 Aligned_cols=216 Identities=28% Similarity=0.400 Sum_probs=184.9
Q ss_pred eEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC----CChH
Q 000702 1096 TIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST----IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~----i~l~ 1168 (1343)
.|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997432 369999999999999999999999999999999999999999999999999863 3456
Q ss_pred HHhhcceeecCCc--cccCCchhhhcCCCC---CCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1169 DLRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
..|++++|+||+| .+|+.|+++|+.... ..+. +.+.++++.++|.+.+. +. ...+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~----~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------AR----SPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hC----CcccCCHHHH
Confidence 7888999999998 688889999996321 1232 34567788888863221 22 2357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChh
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~ 1316 (1343)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988643 7899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 000702 1317 RLLED 1321 (1343)
Q Consensus 1317 eLl~~ 1321 (1343)
++.++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=371.06 Aligned_cols=222 Identities=26% Similarity=0.409 Sum_probs=189.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCCC--hH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTIG--LH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~--l~ 1168 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999964 3599999999999999999999999999999999999985 7999999999986532 44
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..++.+ ..+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----hhhCCHHHHHH
Confidence 678899999999999999999999632 1122 234677888888754321 223333 36799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++|||||+++|+||||||||++||.++...+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+|+++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667999999999999866 99999999999999999999987
Q ss_pred cCCcHH
Q 000702 1321 DKSSMF 1326 (1343)
Q Consensus 1321 ~~~~~f 1326 (1343)
++...+
T Consensus 243 ~~~~~~ 248 (258)
T PRK14268 243 NPREKS 248 (258)
T ss_pred CCCCHH
Confidence 654433
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=374.12 Aligned_cols=214 Identities=23% Similarity=0.379 Sum_probs=189.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
-++++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 35999999999999999999999999999999999999999999999999998877788899999
Q ss_pred eecCCc--cccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDP--NLFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp--~lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
++||+| .+|..|+++|+.... ..+ ++.+.++++.+++.+...+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 478889999996321 222 234788899999877655443 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999987653 789999999999985 5999999999999999999999863
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=362.78 Aligned_cols=208 Identities=27% Similarity=0.381 Sum_probs=181.8
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999974 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred ecCCccccCC-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||++.+|.+ |+++|+... ... .++++.++++..++.++....+ .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999998875 999999531 111 2345788899999876554332 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
+.+|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987643 6899999999999876 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=369.48 Aligned_cols=214 Identities=26% Similarity=0.439 Sum_probs=186.6
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC----------
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---------- 1166 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---------- 1166 (1343)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999974 36999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHHhhcceeecCCccccC-CchhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCC
Q 000702 1167 ---LHDLRSRLGIIPQDPNLFE-GTIRCNLDPL----EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234 (1343)
Q Consensus 1167 ---l~~LR~~i~iVpQdp~lF~-gTIr~NLdp~----~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1234 (1343)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+...+.| ..|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP-----------AQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh-----------hhc
Confidence 2457889999999999885 7999999631 111 2345778888888876654433 579
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1235 SgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
|||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999865 99999999999999
Q ss_pred ecChhHHhhcCC
Q 000702 1312 FDTPGRLLEDKS 1323 (1343)
Q Consensus 1312 ~g~p~eLl~~~~ 1323 (1343)
.|+++++.+.+.
T Consensus 228 ~g~~~~~~~~~~ 239 (252)
T TIGR03005 228 QGKPDEIFRQPK 239 (252)
T ss_pred eCCHHHHhcCCC
Confidence 999999987654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=372.99 Aligned_cols=215 Identities=24% Similarity=0.420 Sum_probs=188.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754446999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eecCCcc--ccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDPN--LFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp~--lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|+||+|. ++..|+++|+.... ... ++++.++++..++.++... ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44568999985321 112 3456778888888665433 23579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 6899999999999888999999999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=359.41 Aligned_cols=198 Identities=24% Similarity=0.389 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999752 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred cCCc--cccCCchhhhcCCCC---CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1178 PQDP--NLFEGTIRCNLDPLE---EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1178 pQdp--~lF~gTIr~NLdp~~---~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
||+| .+|..|+++|+.... ...++++.++++.+++.++..+.| ..||||||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999997432 122357889999999987655444 368999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCcccccc-cCEEEEEeCCEEe
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTE-FKDCTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~iv 1310 (1343)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999876 357899999999999875 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=362.89 Aligned_cols=205 Identities=26% Similarity=0.406 Sum_probs=178.4
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997532 269999999999999999999999999999999999999999999999999976 346778999
Q ss_pred eeecCCccccCC-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+...+ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998532 111 23457788888888665443 23579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998764 47899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=378.80 Aligned_cols=213 Identities=27% Similarity=0.437 Sum_probs=186.5
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999974 46999999999999999999999999999999999999999999999999998754 4578999
Q ss_pred eeecCCccccC-CchhhhcCCCC---CCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPLE---EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~~---~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+|+||+|.+|. .|+++|+..+. ..++ +.+.++++.+++.+. .++++ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 59999997432 1222 345567777777543 34455 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||+.+|++|+|||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+|+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999864 37899999999999976 999999999999999999999764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=369.83 Aligned_cols=219 Identities=25% Similarity=0.381 Sum_probs=187.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC--C---CcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--P---ACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~i--~l~ 1168 (1343)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999974 359999999999999999999999999999999999853 6 499999999999653 345
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL----EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~----~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|+.++|+||+|.+|+.|+++|+... ... .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999999631 111 23456678888887654432 123344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|++|||||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998865 9999999999999999999998
Q ss_pred hcCC
Q 000702 1320 EDKS 1323 (1343)
Q Consensus 1320 ~~~~ 1323 (1343)
+++.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.45 Aligned_cols=205 Identities=25% Similarity=0.409 Sum_probs=177.6
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCC-----cEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS-----GEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-----G~i~~~g--------- 515 (1343)
..++++|+++.|. ++.+|+|||++|++++++|++|||||||||||+++.+..+... |+|.++|
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3689999999763 4689999999999999999999999999999999999988765 9999988
Q ss_pred ------eEEEEcccccccCccHHHHhccCCCC---C----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSPM---D----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
+||.|+|.|--|..||+|||.+|... . ++..++.++.++|.+.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 37999999999999999999999542 1 2345566667777665432 34567889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||+||||||.-+|+|||||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+...+-+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999988877 6778777788999999999988765 89999999999999999998
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8754
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=369.30 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=188.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC--C---CcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--P---ACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~--i~l~ 1168 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999974 359999999999999999999999999999999999987 3 58999999999864 3456
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---C-CCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---E-HSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~-~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||+|.+|.+|+++|+.... . ..+ +++.++++..++.+.+.. .+ .....+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~l----~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD---RL----HTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---hh----hCCcccCCHHHHH
Confidence 7888999999999999999999996321 1 122 235667888888655422 12 2344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+|+++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987778899999999999865 9999999999999999999998
Q ss_pred hcCCcH
Q 000702 1320 EDKSSM 1325 (1343)
Q Consensus 1320 ~~~~~~ 1325 (1343)
+++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 765443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=361.39 Aligned_cols=202 Identities=29% Similarity=0.467 Sum_probs=178.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+.. ++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5799999999643 6999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred ecCCccccCC-chhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++|+... ...+ ++++.++++..++.++.. +.+ .+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1111 345778899998876543 222 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987777999999999999865 9999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=369.22 Aligned_cols=224 Identities=25% Similarity=0.409 Sum_probs=191.1
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~l~ 1168 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999974 3699999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL----EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~----~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++++||+|.+|..|+++|+... ... .++++.++++.+++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999732 111 23346778888888654422 123345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987778999999999998765 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 000702 1320 EDKSSMFLK 1328 (1343)
Q Consensus 1320 ~~~~~~f~~ 1328 (1343)
+++...|.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 765444443
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=373.37 Aligned_cols=215 Identities=24% Similarity=0.391 Sum_probs=189.5
Q ss_pred eEEEEEEEEEEcCC----CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC-hHHH
Q 000702 1096 TIELIDLKVRYGEN----LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG-LHDL 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-l~~L 1170 (1343)
-|+++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999742 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hhcceeecCCcc--ccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1171 RSRLGIIPQDPN--LFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1171 R~~i~iVpQdp~--lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
|++++|+||+|. +|..|+.+|+.... ..+ ++++.++++.++|.++..+.| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67778999996431 112 355788899999987765544 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+..||||++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 378999999999999889999999999999999999998
Q ss_pred hc
Q 000702 1320 ED 1321 (1343)
Q Consensus 1320 ~~ 1321 (1343)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=367.29 Aligned_cols=222 Identities=23% Similarity=0.418 Sum_probs=190.0
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC--C---CcceEEEcCeecCCC--C
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--P---ACGRIIIDNIDISTI--G 1166 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~i--~ 1166 (1343)
+|.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 367999999999974 369999999999999999999999999999999999986 3 689999999999754 3
Q ss_pred hHHHhhcceeecCCccccC-CchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChh
Q 000702 1167 LHDLRSRLGIIPQDPNLFE-GTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237 (1343)
Q Consensus 1167 l~~LR~~i~iVpQdp~lF~-gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1237 (1343)
...+|++++++||++.+|. .|+++|+... ...+ ++++.++++.+++.+.+... ......+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 4567889999999999998 5999999631 1111 24467788888886544321 12234689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChh
Q 000702 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1238 QrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~ 1316 (1343)
||||++||||++++|++|||||||++||..+...+.+.|++..++.|||++||+++.+.. ||||++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHhhcCCc
Q 000702 1317 RLLEDKSS 1324 (1343)
Q Consensus 1317 eLl~~~~~ 1324 (1343)
++...+.-
T Consensus 233 ~~~~~~~~ 240 (252)
T PRK14256 233 KIFTTPEK 240 (252)
T ss_pred HHHhCCCc
Confidence 99876543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=371.94 Aligned_cols=213 Identities=27% Similarity=0.417 Sum_probs=186.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC-hHHHhhcce
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG-LHDLRSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-l~~LR~~i~ 1175 (1343)
++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998765 467888999
Q ss_pred eecCCcc--ccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDPN--LFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp~--lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
++||+|. ++..|+++|+.... ..+ ++++.++++..++.++....+ ..||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP-----------KTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999985 56789999996432 122 345677888888876544332 579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||+++|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998754 47899999999999988999999999999999999998754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=367.45 Aligned_cols=222 Identities=27% Similarity=0.412 Sum_probs=189.7
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--CCh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--IGL 1167 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~l 1167 (1343)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 56999999999974 3599999999999999999999999999999999999863 69999999999875 355
Q ss_pred HHHhhcceeecCCccccCCchhhhcCCCC---CC-----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1168 HDLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH-----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~-----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
..+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+.. .......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67889999999999999999999996421 11 23456777888887654421 12233468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668899999999998866 999999999999999999999
Q ss_pred hhcCCcH
Q 000702 1319 LEDKSSM 1325 (1343)
Q Consensus 1319 l~~~~~~ 1325 (1343)
..++...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14240 233 FTNPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 8654433
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=370.28 Aligned_cols=219 Identities=25% Similarity=0.438 Sum_probs=187.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~l~ 1168 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999974 369999999999999999999999999999999999865 689999999999865 3445
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC----CC----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL----EE----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~----~~----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||+|.+|.+|+++|+... .. ..++.+.++++..++.+.+.. .......+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998632 11 113456778888887543321 122334689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998765 9999999999999999999998
Q ss_pred hcCC
Q 000702 1320 EDKS 1323 (1343)
Q Consensus 1320 ~~~~ 1323 (1343)
.++.
T Consensus 252 ~~~~ 255 (268)
T PRK14248 252 TSPK 255 (268)
T ss_pred hCCC
Confidence 7543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=366.62 Aligned_cols=212 Identities=23% Similarity=0.347 Sum_probs=185.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i 1174 (1343)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 369999999999999999999999999999999999999999999999999988776654 5579
Q ss_pred eeecCCccccCC-chhhhcCCCCC------------C---CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE------------H---SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~------------~---sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
+++||++.+|.+ |+++|+..... . .++++.++++..++.+... ....+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-----------RLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHH
Confidence 999999999987 99999964211 0 2345677788877754432 2235799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
|||++||||++++|++|+|||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987677899999999999975 99999999999999999999
Q ss_pred Hhh
Q 000702 1318 LLE 1320 (1343)
Q Consensus 1318 Ll~ 1320 (1343)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=368.97 Aligned_cols=226 Identities=26% Similarity=0.353 Sum_probs=188.8
Q ss_pred eEEEEEEEEEEcCC-------CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH
Q 000702 1096 TIELIDLKVRYGEN-------LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~ 1168 (1343)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 34699999999999999999999999999999999999999999999999999887654
Q ss_pred H---HhhcceeecCCcc--cc-CCchhhhcCC----CCC----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCC
Q 000702 1169 D---LRSRLGIIPQDPN--LF-EGTIRCNLDP----LEE----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234 (1343)
Q Consensus 1169 ~---LR~~i~iVpQdp~--lF-~gTIr~NLdp----~~~----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1234 (1343)
. +|++++|+||+|. ++ ..|+++|+.. ... ..++++.++++..++.+.. ++ ....+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~----~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------AD----KLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------hh----CChhhC
Confidence 3 6788999999983 44 3699999842 111 1234577788888875221 12 233579
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1235 SgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
|||||||++|||||+++|++|||||||++||+++...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999987653 7899999999999975 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHHH
Q 000702 1312 FDTPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~~f~~l~~ 1331 (1343)
.|++++++..++...+++..
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~ 251 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQS 251 (265)
T ss_pred ECCHHHHcCCCCHHHHHHHH
Confidence 99999998754444555543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=369.06 Aligned_cols=221 Identities=26% Similarity=0.388 Sum_probs=189.9
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--CCh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--IGL 1167 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~l 1167 (1343)
+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999974 3599999999999999999999999999999999999985 48999999999864 345
Q ss_pred HHHhhcceeecCCccccCCchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1168 HDLRSRLGIIPQDPNLFEGTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
..+|++++++||+|.+|..|+++|+... .... ++.+.++++.+++.+.+... ++ ..+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LN----KSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hc----CCcccCCHHHH
Confidence 6788899999999999999999999632 1112 23466788888887654322 22 34468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEe-----CCEEeeec
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS-----DGRVAEFD 1313 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~-----~G~ive~g 1313 (1343)
||+||||||+++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. |||+++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987777899999999999876 99999998 59999999
Q ss_pred ChhHHhhcCCc
Q 000702 1314 TPGRLLEDKSS 1324 (1343)
Q Consensus 1314 ~p~eLl~~~~~ 1324 (1343)
+++++.+++..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999876544
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=371.63 Aligned_cols=212 Identities=26% Similarity=0.390 Sum_probs=188.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred eecCCccccCC-chhhhcCCCC-----------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLE-----------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~-----------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
|+||++.++.+ |+++|+.... ...++++.++++.+++.++....+ .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999996321 112346888999999876554433 369999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
||||++.+|+||||||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999987642 7899999999999865 99999999999999999999874
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=358.94 Aligned_cols=202 Identities=27% Similarity=0.408 Sum_probs=178.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999964 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred ecCCcccc-CCchhhhcCCC---CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1177 IPQDPNLF-EGTIRCNLDPL---EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1177 VpQdp~lF-~gTIr~NLdp~---~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
+||++.+| ..|+++|+... ...+++++.++++..++.+...+. ...||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999888 46999999642 123566788899999997665432 2479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998754 47899999999999865 9999999999998865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=367.44 Aligned_cols=223 Identities=23% Similarity=0.394 Sum_probs=192.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i--~l~ 1168 (1343)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.+++.. +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 359999999999999999999999999999999999875 3899999999998753 456
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC-C--CC-C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL-E--EH-S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~-~--~~-s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||+|.+|.+|+++|+... . .. + .+.+.++++.+++.+++... ++ ..+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LD----KSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---Hh----CCcccCCHHHHH
Confidence 789999999999999999999999732 1 11 1 23467788999987765432 23 345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|+|||||++++|+||+|||||++||..+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999998876 8999999999999999999998
Q ss_pred hcCCcHHH
Q 000702 1320 EDKSSMFL 1327 (1343)
Q Consensus 1320 ~~~~~~f~ 1327 (1343)
..+.+.+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14266 234 INPKDKRT 241 (250)
T ss_pred hCCCChHH
Confidence 76665553
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.95 Aligned_cols=215 Identities=26% Similarity=0.363 Sum_probs=184.1
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC------CChHH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST------IGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~------i~l~~ 1169 (1343)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 369999999999999999999999999999999999999999999999998741 23456
Q ss_pred HhhcceeecCCccccCC-chhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1170 LRSRLGIIPQDPNLFEG-TIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~g-TIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
+|++++|+||+|.+|.+ |+++|+..+ .... .+++.++++..++.++....+ .+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 78899999999999975 999999621 1112 234666777877766554433 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
|++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998764 37899999999999865 999999999999999999998
Q ss_pred hhcCC
Q 000702 1319 LEDKS 1323 (1343)
Q Consensus 1319 l~~~~ 1323 (1343)
.+.+.
T Consensus 229 ~~~~~ 233 (242)
T PRK11124 229 TQPQT 233 (242)
T ss_pred cCccc
Confidence 65433
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=377.65 Aligned_cols=228 Identities=21% Similarity=0.316 Sum_probs=188.0
Q ss_pred eEEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC----CCcceEEEcCeecCCCChHH
Q 000702 1096 TIELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE----PACGRIIIDNIDISTIGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~----~~~G~I~IdG~di~~i~l~~ 1169 (1343)
.++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999997532 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhh----cceeecCCcc--ccC-Cchhhh----cCCCCCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCC
Q 000702 1170 LRS----RLGIIPQDPN--LFE-GTIRCN----LDPLEEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234 (1343)
Q Consensus 1170 LR~----~i~iVpQdp~--lF~-gTIr~N----Ldp~~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1234 (1343)
+|+ .|++|||+|. ++. -|+.+| +...... ..+++.++|++++|.+.... ......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 654 6999999995 332 255544 3322111 23457889999999653211 12234579
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-ccCEEEEEeCCEEee
Q 000702 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1235 SgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive 1311 (1343)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 789999999999985 599999999999999
Q ss_pred ecChhHHhhcCCcHHH-HHHH
Q 000702 1312 FDTPGRLLEDKSSMFL-KLVT 1331 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~~f~-~l~~ 1331 (1343)
.|+++++++++...|. .++.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred ECCHHHHhhCCCChHHHHHHH
Confidence 9999999987655554 4443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=344.29 Aligned_cols=203 Identities=32% Similarity=0.442 Sum_probs=170.5
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 518 (1343)
|+|+|+|+.|. ++.+++|+||+|++||+++++|||||||||+|+.|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999985 57899999999999999999999999999999999999999999999998 489
Q ss_pred EEccccccc-CccHHHHhccCCC---CCHHHHH----HHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHH
Q 000702 519 YVSQSAWIQ-SGNIEENILFGSP---MDKAKYK----KVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARA 590 (1343)
Q Consensus 519 ~v~Q~~~l~-~~ti~~Ni~~g~~---~~~~~~~----~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARa 590 (1343)
||-|+.-+| +.||.|||.+-.. +++++.+ +.++..+|+.. .........|||||+|||.+|||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQRVGVARA 149 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhHHHHHHH
Confidence 999998776 7899999988643 5555444 34444444321 11234567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCc-cccCCEEEEEeCCeEEEecChHHHHhcC
Q 000702 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 591 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
|..+|+|+++||||+||||-+.+++-+++..... -++|+|+|||+++. ++.+|||.+|++|+++..+++++++.+.
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 9999999999999999999998887555432222 28999999999987 5669999999999999999999998763
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=364.70 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=184.3
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC--hHHHhhcc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG--LHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--l~~LR~~i 1174 (1343)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999974 36999999999999999999999999999999999999999999999999998643 35678899
Q ss_pred eeecCCccccC-CchhhhcCCCC----CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPLE----EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~~----~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+|+||++.+|. .|+++|+.... ..+ ++++.++++..++.+..... ...||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHY-----------PSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-----------hhhcCHHHHHHHHHH
Confidence 99999999886 59999996421 111 23456777777776554332 257999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
||++++|++|+|||||++||.++...+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|++.++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 37899999999999865 9999999999999999999997644
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=360.47 Aligned_cols=203 Identities=28% Similarity=0.421 Sum_probs=175.3
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---Hh
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR 1171 (1343)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996432 36999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hcceeecCCccccC-CchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1172 -SRLGIIPQDPNLFE-GTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1172 -~~i~iVpQdp~lF~-gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
++++|+||+|.+|. .|+++|+... .... .+++.++++..++.+...+. ...||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 67999999999996 5999999641 1121 23467778888776544332 257999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccccCEEEEEeCCEEe
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLVLSDGRVA 1310 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~iv 1310 (1343)
+||||++++|+||||||||++||+++...+.+.|++.. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 368999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=365.93 Aligned_cols=222 Identities=27% Similarity=0.404 Sum_probs=187.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC--------h
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG--------L 1167 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--------l 1167 (1343)
-++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999974 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhhcceeecCCccccC-CchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1168 HDLRSRLGIIPQDPNLFE-GTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~-gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
..+|++++|+||+|.+|. .|+++|+... .... .+.+.++++..++.+... ....+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKET-----------SYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-----------CChhhCChHH
Confidence 467889999999999886 6999999631 1122 234566777777754322 2336899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChh
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~ 1316 (1343)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999987653 7899999999999866 9999999999999999999
Q ss_pred HHhhcCC-cHHHHHH
Q 000702 1317 RLLEDKS-SMFLKLV 1330 (1343)
Q Consensus 1317 eLl~~~~-~~f~~l~ 1330 (1343)
++.+.+. ...+.++
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (250)
T PRK11264 230 ALFADPQQPRTRQFL 244 (250)
T ss_pred HHhcCCCCHHHHHHH
Confidence 9986543 2334444
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=364.60 Aligned_cols=211 Identities=27% Similarity=0.496 Sum_probs=181.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcce
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i~ 1175 (1343)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988776553 56799
Q ss_pred eecCCccccCC-chhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
|+||++.+|.+ |+++|+... .... ++++.+.++..++.+... ....+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-----------SKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999632 1112 223456677776654332 2335799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++.+|++|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998764 37899999999987765 99999999999999999999874
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=360.41 Aligned_cols=200 Identities=29% Similarity=0.462 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred cCCcc--ccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1178 PQDPN--LFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1178 pQdp~--lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
||+|. ++..|+++|+.... ..+ ++++.++++..++.+...+.+ .+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP-----------FTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 99983 67889999996421 122 234667888888866544332 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCE
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGR 1308 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1308 (1343)
+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999987653 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=365.47 Aligned_cols=218 Identities=26% Similarity=0.421 Sum_probs=188.6
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-----cceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA-----CGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~i--~l~ 1168 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999974 35999999999999999999999999999999999999987 69999999998653 455
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---C-CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---E-HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~-~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|+.++|+||+|.+|..|+++|+.... . .. ++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7889999999999999999999997421 1 11 2345667777887655432 233455789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++|||||+.+|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 7999999999999999999997
Q ss_pred hcC
Q 000702 1320 EDK 1322 (1343)
Q Consensus 1320 ~~~ 1322 (1343)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=384.81 Aligned_cols=220 Identities=28% Similarity=0.419 Sum_probs=188.9
Q ss_pred eEEEEEEEEEEcCCC----------------------CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 000702 1096 TIELIDLKVRYGENL----------------------PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~----------------------~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G 1153 (1343)
.|+++||+..|++.. ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 467777777775532 1379999999999999999999999999999999999999999
Q ss_pred eEEEcCeecCCCChHHH----hhcceeecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccC
Q 000702 1154 RIIIDNIDISTIGLHDL----RSRLGIIPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQ 1221 (1343)
Q Consensus 1154 ~I~IdG~di~~i~l~~L----R~~i~iVpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~ 1221 (1343)
+|.+||.|+.+.+...+ |++++|+||++.+|.. |+++|+.... ..+ ++++.++++.++|.++..+.|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 99999999998876654 3579999999999974 9999996321 122 345778899999987765544
Q ss_pred CCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-c
Q 000702 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-S 1298 (1343)
Q Consensus 1222 gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~ 1298 (1343)
.+||||||||++|||||+.+|+||||||||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. |
T Consensus 163 ----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 163 ----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 4799999999999999999999999999999999999999999998764 37899999999998865 9
Q ss_pred CEEEEEeCCEEeeecChhHHhhcCCcHH
Q 000702 1299 DLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1299 DrIlvl~~G~ive~g~p~eLl~~~~~~f 1326 (1343)
|||++|++|++++.|+|++++.++...|
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 9999999999999999999987665433
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=369.17 Aligned_cols=222 Identities=26% Similarity=0.420 Sum_probs=191.7
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--C
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--I 1165 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i 1165 (1343)
..+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3457999999999964 3699999999999999999999999999999999999884 89999999999875 3
Q ss_pred ChHHHhhcceeecCCccccCCchhhhcCCC---CC-CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChh
Q 000702 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPL---EE-HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~---~~-~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1237 (1343)
+...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+|
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 456788999999999999999999999632 11 11 2447788888888655432 223445789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChh
Q 000702 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1238 QrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~ 1316 (1343)
||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred HHhhcCC
Q 000702 1317 RLLEDKS 1323 (1343)
Q Consensus 1317 eLl~~~~ 1323 (1343)
++.+++.
T Consensus 253 ~~~~~~~ 259 (272)
T PRK14236 253 TLFTSPA 259 (272)
T ss_pred HHhcCCC
Confidence 9986543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=368.18 Aligned_cols=223 Identities=24% Similarity=0.423 Sum_probs=189.0
Q ss_pred CCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--
Q 000702 1092 PENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST-- 1164 (1343)
Q Consensus 1092 p~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~-- 1164 (1343)
|....++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 20 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred CCceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 33446999999999974 359999999999999999999999999999999999987 699999999999853
Q ss_pred CChHHHhhcceeecCCccccCCchhhhcCCC---CCCC-----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCCh
Q 000702 1165 IGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL---EEHS-----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1165 i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~---~~~s-----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
.+...+|++++|+||+|.+|..|+++|+... ...+ ++.+.++++..++.+.+. ......+.+|||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSg 170 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSG 170 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCH
Confidence 3456778899999999999999999999631 1222 223456666666543322 222344568999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecCh
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p 1315 (1343)
|||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778999999999999865 999999999999999999
Q ss_pred hHHhhcCC
Q 000702 1316 GRLLEDKS 1323 (1343)
Q Consensus 1316 ~eLl~~~~ 1323 (1343)
+++..++.
T Consensus 251 ~~~~~~~~ 258 (271)
T PRK14238 251 DKIFSNPS 258 (271)
T ss_pred HHHHcCCC
Confidence 99987654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=383.27 Aligned_cols=217 Identities=21% Similarity=0.392 Sum_probs=190.6
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 359999999999999999999999999999999999999999999999999987764 46789
Q ss_pred eeecCCccccCC-chhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+|+||++.+|.. |+++|+.+. ...+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999742 1222 245678888899877655544 468999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++..++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988877654 26899999999998755 99999999999999999999998877
Q ss_pred cHH
Q 000702 1324 SMF 1326 (1343)
Q Consensus 1324 ~~f 1326 (1343)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 655
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=369.68 Aligned_cols=221 Identities=25% Similarity=0.442 Sum_probs=189.7
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCCC--C
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDISTI--G 1166 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i--~ 1166 (1343)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++... +
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 346999999999975 359999999999999999999999999999999999997 6899999999998653 4
Q ss_pred hHHHhhcceeecCCccccCCchhhhcCCC------CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1167 LHDLRSRLGIIPQDPNLFEGTIRCNLDPL------EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1167 l~~LR~~i~iVpQdp~lF~gTIr~NLdp~------~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
...+|++++|+||++.+|.+|+++|+... ....++++.++++..++.+.+... ......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHH
Confidence 56778899999999999999999999632 111245688889998886544321 22334689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEE-EEeCCEEeeecChhHH
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVL-VLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIl-vl~~G~ive~g~p~eL 1318 (1343)
|++|||||+++|+||||||||++||.++.+.+.+.|++..+++|+|+++|+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988777899999999999876 99975 5799999999999999
Q ss_pred hhcCC
Q 000702 1319 LEDKS 1323 (1343)
Q Consensus 1319 l~~~~ 1323 (1343)
.+++.
T Consensus 268 ~~~~~ 272 (285)
T PRK14254 268 FENPE 272 (285)
T ss_pred HhCcC
Confidence 86543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=368.04 Aligned_cols=211 Identities=26% Similarity=0.447 Sum_probs=187.4
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..++...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999974 369999999999999999999999999999999999999999999999999988888888889999
Q ss_pred ecCCccccCC-chhhhcCCCC--------C---CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLE--------E---HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~--------~---~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1244 (1343)
+||++.+|.+ |+++|++... . ..++++.++++.+++.+..... ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999998877 9999997421 1 1234577888888886654332 25799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1245 ARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998764 37899999999999865 99999999999999999999875
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=366.75 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=188.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~l~ 1168 (1343)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999974 369999999999999999999999999999999999986 379999999999853 4556
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---CC---CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH---SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~---sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
.+|++++++||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7888999999999999899999997421 11 234566778888886655321 2334568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEe---------CCEEeee
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS---------DGRVAEF 1312 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~---------~G~ive~ 1312 (1343)
+|||||+++|+||||||||++||+++...+.+.|++..+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987777899999999998865 99999998 8999999
Q ss_pred cChhHHhhcCC
Q 000702 1313 DTPGRLLEDKS 1323 (1343)
Q Consensus 1313 g~p~eLl~~~~ 1323 (1343)
|+++++.+++.
T Consensus 241 ~~~~~~~~~~~ 251 (264)
T PRK14243 241 DRTEKIFNSPQ 251 (264)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=350.19 Aligned_cols=199 Identities=34% Similarity=0.518 Sum_probs=169.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----------eEEEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----------TAAYV 520 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~~v 520 (1343)
.|+++|++|+|.. . ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +||||
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 5899999999853 2 699999999999999999999999999999999999999999999876 49999
Q ss_pred ccc---ccccCccHHHHhccCCCC-----------CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 521 SQS---AWIQSGNIEENILFGSPM-----------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 521 ~Q~---~~l~~~ti~~Ni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
||. .|-|..||+|-+.+|... |.++.+++++..++.+.. ......|||||+|||-
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHHHHH
Confidence 996 577999999999998431 235666777777665322 2445669999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|||||.++|++|+|||||+++|+.++..+++- ++.+ .+|+||++|||+++.+. .+|+|+.|. +++...|++++...
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999998888764 5444 35999999999999875 599999985 57788899998865
Q ss_pred c
Q 000702 665 A 665 (1343)
Q Consensus 665 ~ 665 (1343)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 3
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=353.12 Aligned_cols=201 Identities=58% Similarity=0.956 Sum_probs=182.3
Q ss_pred EEEEeeEEEecCCCC--CCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCeEEEEcccccccCc
Q 000702 452 IQIENAEFCWYPSSS--RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ 529 (1343)
++++|++++|.+... +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999854211 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000702 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609 (1343)
Q Consensus 530 ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~ 609 (1343)
|++||+.++..+++++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++||||++.+|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877766677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecCCCccccCCEEEEEeCCe
Q 000702 610 HTGSELFKEYIMTA-LANKTVIFVTHQVEFLPAADFILVLKEGR 652 (1343)
Q Consensus 610 ~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~~d~i~~l~~G~ 652 (1343)
+..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99888877655544 34799999999999887899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=359.78 Aligned_cols=202 Identities=23% Similarity=0.403 Sum_probs=176.0
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999975 3699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred ecCCccccC-CchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFE-GTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||++.+|. .|+++|+... .... ++++.++++..++.+.....+ .+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999985 5999999642 1122 234667788888876654433 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
+++|++|+|||||++||+++...+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999998876 9999999999999886
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=364.44 Aligned_cols=218 Identities=25% Similarity=0.386 Sum_probs=188.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~l~ 1168 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999974 3599999999999999999999999999999999999875 799999999999653 345
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---CC-C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH-S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~-s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||++.+|..|+++|+.... .. + .+++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6788999999999999999999997321 11 1 23467788888886543321 22344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|+||||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987777899999999999866 9999999999999999999998
Q ss_pred hcC
Q 000702 1320 EDK 1322 (1343)
Q Consensus 1320 ~~~ 1322 (1343)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=360.01 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=175.6
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH---HHhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH---DLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~---~LR~~ 1173 (1343)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 4699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred ceeecCCccccC-CchhhhcCCC----C---CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLFE-GTIRCNLDPL----E---EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF~-gTIr~NLdp~----~---~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++|+||+|.+|. .|+++|+... . ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999996 5999998642 1 112456788999999876654433 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCE
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGR 1308 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1308 (1343)
|||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999886 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=376.59 Aligned_cols=228 Identities=24% Similarity=0.364 Sum_probs=188.8
Q ss_pred eEEEEEEEEEEcC--CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---cceEEEcCeecCCCChHHH
Q 000702 1096 TIELIDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA---CGRIIIDNIDISTIGLHDL 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~---~G~I~IdG~di~~i~l~~L 1170 (1343)
.++++|++++|+. +...+|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999963 2246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----hcceeecCCc--cccC-CchhhhcC----CCCCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCC
Q 000702 1171 R----SRLGIIPQDP--NLFE-GTIRCNLD----PLEEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWS 1235 (1343)
Q Consensus 1171 R----~~i~iVpQdp--~lF~-gTIr~NLd----p~~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1235 (1343)
| ++|++||||| .++. -|+.+|+. .....+. +.+.++|+.+++.+. . ..+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~-------~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-------R-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh-------H-HHhcCCcccCC
Confidence 4 4799999999 4554 37777652 2222232 345667787777431 1 11234456899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1236 gGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987654 7899999999999875 999999999999999
Q ss_pred cChhHHhhcCCcHHHH-HHH
Q 000702 1313 DTPGRLLEDKSSMFLK-LVT 1331 (1343)
Q Consensus 1313 g~p~eLl~~~~~~f~~-l~~ 1331 (1343)
|+++++.+++..-|.+ |+.
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 9999999877655554 444
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=359.46 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=175.0
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh---HHHhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL---HDLRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l---~~LR~~ 1173 (1343)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987754 347889
Q ss_pred ceeecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++++||+|.+|.+ |+++|+.... ..+ ++++.++++..++.+.....| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 9999996421 112 345778888888876544332 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEE
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~i 1309 (1343)
||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 47899999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=362.59 Aligned_cols=212 Identities=26% Similarity=0.412 Sum_probs=187.0
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+.. ++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+++...+. .++.+++
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 5789999999753 59999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred ecCCccccCC-chhhhcCCC-C------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL-E------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~-~------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++|+... . ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999631 1 112456778889999887765544 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCC
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~ 1323 (1343)
+++|++|||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.. ||||++|++|++++.|+++++.+.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCc
Confidence 999999999999999999999999999987653 7899999999999865 99999999999999999999986543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=357.62 Aligned_cols=211 Identities=22% Similarity=0.316 Sum_probs=187.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh----HHHhh
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL----HDLRS 1172 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l----~~LR~ 1172 (1343)
+.+.|+.++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999865 469999999999999999999999999999999999999999999999999876542 34567
Q ss_pred cceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
.++|+||+|.+|+.|+++|+......++++..++++.+++.+.+..+|.|+++.+.....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999865445667778899999999988888999999888888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEeccCcccccccCEEEEEeCCE
Q 000702 1253 RILVLDEATASVDTATDNLIQK--IIRTEF-KDCTVCTIAHRIPTVIDSDLVLVLSDGR 1308 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~--~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1308 (1343)
++|||||||++||..+...+.+ .++... .+.|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999888777 444332 3689999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=361.20 Aligned_cols=203 Identities=26% Similarity=0.332 Sum_probs=176.5
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred eeecCCccccC-CchhhhcCCCC---CC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPLE---EH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~~---~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+|+||+|.+|. .|+++|+.... .. .++++.++++..++.+...+.+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 69999996321 11 2356788899998876655443 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEe--CCEEeeecCh
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLS--DGRVAEFDTP 1315 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~--~G~ive~g~p 1315 (1343)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998764 37899999999998765 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=359.42 Aligned_cols=218 Identities=29% Similarity=0.482 Sum_probs=190.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 518 (1343)
++++|+++.|.. ..+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 468999999853 235799999999999999999999999999999999999999999999987 289
Q ss_pred EEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000702 519 YVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597 (1343)
Q Consensus 519 ~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~i 597 (1343)
|++|++++++.|++||+.++.. ....+..+.++..++.+.++.+|.|.++..+.++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998654 334445555666677777888999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHH
Q 000702 598 YLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671 (1343)
Q Consensus 598 llLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 671 (1343)
+||||||++||+.+.+.+.+. +....+|+|+|++||+++.+..||++++|++|++++.|+.+++....+.|..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAY 232 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHH
Confidence 999999999999998877654 5555568999999999999878999999999999999999998876555544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=364.68 Aligned_cols=225 Identities=24% Similarity=0.384 Sum_probs=191.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~l~ 1168 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5999999999964 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCC---C-C----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLE---E-H----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~-~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
..|++++|+||+|.+|.+|+++|+.... . . .++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-------RLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-------HhhcChhhCCHHHHH
Confidence 7788999999999999999999997421 1 1 12356777888877544321 233445689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++.+|++|||||||++||.++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987777899999999999865 9999999999999999999998
Q ss_pred hcCCcHHHHH
Q 000702 1320 EDKSSMFLKL 1329 (1343)
Q Consensus 1320 ~~~~~~f~~l 1329 (1343)
+++...+.+.
T Consensus 237 ~~~~~~~~~~ 246 (253)
T PRK14261 237 ENPHEELTEN 246 (253)
T ss_pred hCCCcHHHHH
Confidence 7654434443
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=367.18 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=192.3
Q ss_pred CCCCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecC--
Q 000702 1091 WPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIS-- 1163 (1343)
Q Consensus 1091 wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~-- 1163 (1343)
-|..+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 356788999999999974 3699999999999999999999999999999999999875 7999999998874
Q ss_pred --CCChHHHhhcceeecCCccccCCchhhhcCCCC---C-----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCC
Q 000702 1164 --TIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE---E-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1164 --~i~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~-----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1233 (1343)
......+|++++|+||+|.+|.+|+++|+.... . ..++++.++++.+++.+.+.. .......+
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKD-------RLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhH-------HHhCCccc
Confidence 234457888999999999999999999996421 1 124567888888887643322 22334568
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1234 LSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
||+|||||++||||++++|++|||||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987767899999999999965 999999999999999
Q ss_pred cChhHHhhcC
Q 000702 1313 DTPGRLLEDK 1322 (1343)
Q Consensus 1313 g~p~eLl~~~ 1322 (1343)
|+++++..++
T Consensus 242 g~~~~~~~~~ 251 (265)
T PRK14252 242 GATDTIFIKP 251 (265)
T ss_pred CCHHHHHhCC
Confidence 9999998654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.96 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=183.7
Q ss_pred eEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----ChH
Q 000702 1096 TIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI----GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~l~ 1168 (1343)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 3699999999999999999999999999999999999999999999999998753 245
Q ss_pred HHhhcceeecCCc--cccCCchhhhcCCC---CCCCH----HHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhH
Q 000702 1169 DLRSRLGIIPQDP--NLFEGTIRCNLDPL---EEHSD----REIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp--~lF~gTIr~NLdp~---~~~sd----~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
..|+.++++||+| .+|..|+++|+... ...+. +.+.++++.+++. ++... ...+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-----------SPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhC-----------CcccCCHHH
Confidence 6788999999998 57888999999631 11222 3356778888875 33222 235799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChh
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~ 1316 (1343)
|||++|||||+.+|++|||||||++||+.+...+.+.|++.. ++.|||++||+++.+.. ||||++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 47899999999999864 9999999999999999999
Q ss_pred HHhhc
Q 000702 1317 RLLED 1321 (1343)
Q Consensus 1317 eLl~~ 1321 (1343)
++.++
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=371.17 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=183.2
Q ss_pred EEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----ChHH
Q 000702 1097 IELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI----GLHD 1169 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~l~~ 1169 (1343)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3699999999999999999999999999999999999999999999999998764 3467
Q ss_pred HhhcceeecCCc--cccCCchhhhcCCCC---CCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1170 LRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1170 LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
+|++|+|+||+| .+|..|+++|+.... ..+.+ .+.++++..++.+.. ++. ...+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL------FEK----NPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh------hhC----CcccCCHHHHH
Confidence 888999999998 688899999996321 12332 245667777775321 122 23579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
|++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999987643 7899999999998865 999999999999999999998
Q ss_pred hhc
Q 000702 1319 LED 1321 (1343)
Q Consensus 1319 l~~ 1321 (1343)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=367.75 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=188.9
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred eeecCCccccC-CchhhhcCCCC-----------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPLE-----------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~~-----------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
+|+||++.+|. .|+++|+.... +..++.+.++++..++.+...+. ...||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----------VDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCChHHHHHH
Confidence 99999998875 59999996421 11234578889998887654332 357999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
+||||++++|++|||||||++||+++...+.+.|++..+ ++|+|+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999998865 9999999999999999999987
Q ss_pred h
Q 000702 1320 E 1320 (1343)
Q Consensus 1320 ~ 1320 (1343)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=360.55 Aligned_cols=211 Identities=27% Similarity=0.432 Sum_probs=178.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH-Hhhcce
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-LRSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~-LR~~i~ 1175 (1343)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred eecCCccccCC-chhhhcCCC-CC--CCHHH-HHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPL-EE--HSDRE-IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~-~~--~sd~e-i~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
|+||++.+|.+ |+++|+... .. ...++ ..++++..+. ++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 999999632 11 11222 2344444431 1111223345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998653 7899999999999986 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=362.37 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=179.9
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH-Hhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-LRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~-LR~~i 1174 (1343)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred eeecCCccccCC-chhhhcCCCCC-CC----HHHHHHHHHHc-CCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE-HS----DREIWEALDKS-QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~-~s----d~ei~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
+++||++.+|.+ |+++|+..... .+ ++++.++++.. ++.+. .+. ....||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-------~~~----~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-------RIQ----RAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-------HhC----chhhCCHHHHHHHHHHHH
Confidence 999999999985 99999964211 12 22234444443 23221 122 335799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998764 47999999999997755 99999999999999999999975
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=372.60 Aligned_cols=217 Identities=27% Similarity=0.387 Sum_probs=183.0
Q ss_pred CceEEEEEEEEEEcCCC---CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC----C-
Q 000702 1094 NGTIELIDLKVRYGENL---PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST----I- 1165 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~----i- 1165 (1343)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997542 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHHHhhcceeecCCc--cccCCchhhhcCCCC---CCCHH----HHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCC
Q 000702 1166 GLHDLRSRLGIIPQDP--NLFEGTIRCNLDPLE---EHSDR----EIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWS 1235 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp--~lF~gTIr~NLdp~~---~~sd~----ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS 1235 (1343)
+...+|++++|+||+| .+|..|+++|+.... ....+ .+.++++..++. ++. + ....+||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-------~----~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV-------K----RSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-------c----CChhhCC
Confidence 3567888999999998 477889999996321 12222 344566666663 222 2 2335799
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1236 gGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
||||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987653 7899999999998755 999999999999999
Q ss_pred cChhHHhhc
Q 000702 1313 DTPGRLLED 1321 (1343)
Q Consensus 1313 g~p~eLl~~ 1321 (1343)
|++++++++
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 999998753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=344.22 Aligned_cols=172 Identities=38% Similarity=0.615 Sum_probs=162.4
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544469999999999999999999999999999999999999999999999999999988889999999
Q ss_pred ecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILl 1256 (1343)
+||+|.+|.+|+++|+ ||||||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEEeCCEE
Q 000702 1257 LDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309 (1343)
Q Consensus 1257 LDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~i 1309 (1343)
|||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 37899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=364.26 Aligned_cols=222 Identities=22% Similarity=0.327 Sum_probs=192.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCC--ChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTI--GLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~l~ 1168 (1343)
.+.+++.+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4899999999974 3699999999999999999999999999999999999986 799999999998653 444
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCCC------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLEE------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
.+|++++|+||+|.+|..|+++|+..... ...+++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999974311 1235678899999987655432 2345568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEe--------CCEEeeec
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS--------DGRVAEFD 1313 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~--------~G~ive~g 1313 (1343)
+||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988777899999999998866 99999996 89999999
Q ss_pred ChhHHhhcCCcHH
Q 000702 1314 TPGRLLEDKSSMF 1326 (1343)
Q Consensus 1314 ~p~eLl~~~~~~f 1326 (1343)
+++++++++...+
T Consensus 239 ~~~~~~~~~~~~~ 251 (261)
T PRK14263 239 PTAQIFQNPREQL 251 (261)
T ss_pred CHHHHHhCCCcHH
Confidence 9999987654334
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=356.27 Aligned_cols=442 Identities=21% Similarity=0.243 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCh--h---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000702 197 YLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTS--G---EIVNYMAVDVQRVGDYS-WYLHDIWMLPLQIILALAIL 270 (1343)
Q Consensus 197 ~~~~~~~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~--G---~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~~l 270 (1343)
.|...++..+.|.-|...+.+|-+.-...++-.... + ..=+++..|+..+.+.. .....+..+.+.++....+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899999999999999999877554432221 1 23478999999886643 34556666666677667777
Q ss_pred HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000702 271 YKNVG---------------IASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDR 335 (1343)
Q Consensus 271 ~~~~g---------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~ 335 (1343)
|...| ...++.++-.++...+..+++|...+..-+..+...........+-++...|-+|+-|+.
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~ 266 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKV 266 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHH
Confidence 74444 222222222222223334455555554444444444455556678889999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000702 336 YRIQLEEMRGVEFRWLRKALYSQAF----ITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPD 411 (1343)
Q Consensus 336 ~~~~i~~~r~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~ 411 (1343)
-++++++....-++..++......- .....+.+. +..+..++-.+..|.++.|.+..+...|+.+...++.+-+
T Consensus 267 Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~--v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~ 344 (604)
T COG4178 267 ERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV--VLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFID 344 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH--HHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766555444443332222211 111111121 1111223334568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc------ccccccc-cc--CCCCCcceEEEEeeEEEecCCCCCCccccceeEecCCeE
Q 000702 412 LVSMMAQTKVSLDRISGFLQEEE------LQEDATI-VL--PRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMR 482 (1343)
Q Consensus 412 ~~~~~~~a~~s~~Ri~~fl~~~e------~~~~~~~-~~--~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~ 482 (1343)
.+..+.+-+++..|+.+|-..-+ ....... .. .... +..|.++|++..-+ ++++.+++.||++++||.
T Consensus 345 ~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p--~~~~ll~~l~~~v~~G~~ 421 (604)
T COG4178 345 NYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTP--DGQTLLSELNFEVRPGER 421 (604)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECC--CCCeeeccceeeeCCCCE
Confidence 99999999999999999974322 1111100 00 0001 35799999999754 345899999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--eEEEEcccccccCccHHHHhccCCC---CCHHHHHHHHHHhhhhh
Q 000702 483 VAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSAWIQSGNIEENILFGSP---MDKAKYKKVIHACSLKK 557 (1343)
Q Consensus 483 ~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~~ti~~Ni~~g~~---~~~~~~~~~~~~~~l~~ 557 (1343)
+.|.|+||||||||+++|+|..|.-+|+|..+. .+-|+||.|++..||.||-|++.+. ++++.+.++++.|+|.+
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 999999999999999999999999999998874 3799999999999999999999753 67899999999999998
Q ss_pred hHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCC
Q 000702 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVE 637 (1343)
Q Consensus 558 ~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~ 637 (1343)
-.+.+.+-+ .-...||+|||||+++||.++++|++++|||+|||||++++..+++. ++..+.+.|+|-|.||..
T Consensus 502 L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 502 LAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKEELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHhhCCCCEEEEeccchh
Confidence 888875432 35678999999999999999999999999999999999999888764 677778999999999998
Q ss_pred ccccCCEEEEEe
Q 000702 638 FLPAADFILVLK 649 (1343)
Q Consensus 638 ~l~~~d~i~~l~ 649 (1343)
.....++.+.+.
T Consensus 576 l~~~h~~~l~l~ 587 (604)
T COG4178 576 LWNFHSRQLELL 587 (604)
T ss_pred hHHHHhhheeec
Confidence 877766666554
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=365.99 Aligned_cols=219 Identities=26% Similarity=0.409 Sum_probs=188.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCCC-hHH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTIG-LHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~-l~~ 1169 (1343)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999974 3699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhhcceeecCCccccCCchhhhcCCC----CCCCHHHH----HHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1170 LRSRLGIIPQDPNLFEGTIRCNLDPL----EEHSDREI----WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~gTIr~NLdp~----~~~sd~ei----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
+|++++|+||+|.+|..|+++|+... ...+++++ .++++.+++.+... +.+.....+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 78999999999999999999999732 12344443 45567777654331 22334456899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999875 99999999999999999999987
Q ss_pred cCC
Q 000702 1321 DKS 1323 (1343)
Q Consensus 1321 ~~~ 1323 (1343)
.+.
T Consensus 252 ~~~ 254 (276)
T PRK14271 252 SPK 254 (276)
T ss_pred CcC
Confidence 643
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=367.03 Aligned_cols=227 Identities=25% Similarity=0.356 Sum_probs=190.5
Q ss_pred eEEEEEEEEEEcCC-------CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH
Q 000702 1096 TIELIDLKVRYGEN-------LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~ 1168 (1343)
-|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999621 23699999999999999999999999999999999999999999999999999765556
Q ss_pred HHhhcceeecCCcc--ccCC-chhhhcCC----CC----CCCHHHHHHHHHHcCCc-hHHhcccCCCCcccccCCCCCCh
Q 000702 1169 DLRSRLGIIPQDPN--LFEG-TIRCNLDP----LE----EHSDREIWEALDKSQLG-DIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~--lF~g-TIr~NLdp----~~----~~sd~ei~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
..|++++|+||+|. ++.. |+.+|+.. .. ...++++.++++.+++. +... ..+ .+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~----~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YYP----HMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cCc----hhcCH
Confidence 66778999999985 4443 78887742 11 11235678899999984 3322 222 47999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
|||||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998643 7899999999999987 9999999999999999
Q ss_pred ChhHHhhcC-CcHHHHHHHHh
Q 000702 1314 TPGRLLEDK-SSMFLKLVTEY 1333 (1343)
Q Consensus 1314 ~p~eLl~~~-~~~f~~l~~~~ 1333 (1343)
+++++.+++ +..+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998764 34566777654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=363.45 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=186.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999974 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred eecCCccc-cCCchhhhcCCCC--C-----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNL-FEGTIRCNLDPLE--E-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~l-F~gTIr~NLdp~~--~-----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
|+||++.+ +..|+++|+.... . ..++.+.++++.+++.+...+. ...||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99999987 6779999996421 1 1234577888888886654332 25799999999999999
Q ss_pred Hh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1248 LL------KQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1248 LL------~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
|+ .+|++|||||||++||+.+...+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998764 47899999999999874 999999999999999999998
Q ss_pred hh
Q 000702 1319 LE 1320 (1343)
Q Consensus 1319 l~ 1320 (1343)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=365.01 Aligned_cols=221 Identities=24% Similarity=0.395 Sum_probs=190.1
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-----cceEEEcCeecCC--CCh
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA-----CGRIIIDNIDIST--IGL 1167 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~--i~l 1167 (1343)
+.|+++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhhcceeecCCccccCCchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1168 HDLRSRLGIIPQDPNLFEGTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
..+|+.++++||++.+|..|+++|+... +..+ ++.+.++++.+++.+++..+ .......||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 5778899999999999999999999632 1112 23467788899887655422 2334468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeC-----CEEee
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSD-----GRVAE 1311 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~-----G~ive 1311 (1343)
||++||||++++|++|||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||||++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998743 47999999999999865 999999999 99999
Q ss_pred ecChhHHhhcCCc
Q 000702 1312 FDTPGRLLEDKSS 1324 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~ 1324 (1343)
.|+|+++.+++..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876554
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=368.62 Aligned_cols=212 Identities=31% Similarity=0.442 Sum_probs=183.0
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecC--CCChHHHhhcc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIS--TIGLHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~--~i~l~~LR~~i 1174 (1343)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999974 35999999999999999999999999999999999999999999999999985 33455778899
Q ss_pred eeecCCcc--ccCCchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDPN--LFEGTIRCNLDPL---EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp~--lF~gTIr~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+|+||+|. +|..|+.+|+... ...+. +++.++++.+++.++.. .+ ..+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------QP----IQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------CC----chhCCHHHHHHHHHH
Confidence 99999985 5778999998642 11222 34567888888865532 22 257999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||||++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999999865 999999999999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=362.43 Aligned_cols=204 Identities=27% Similarity=0.410 Sum_probs=179.6
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999974 36999999999999999999999999999999999999999999999998763 567889
Q ss_pred eeecCCccccC-CchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
+|+||+|.+|. .|+++|+... ....++++.++++..++.+..... ..+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 6999999743 222356788899999887654332 2579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChh
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~ 1316 (1343)
++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998764 37899999999998865 9999999999999988754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=335.91 Aligned_cols=204 Identities=31% Similarity=0.470 Sum_probs=174.6
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 515 (1343)
..|++++++++|. ++.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 4699999999983 57899999999999999999999999999999999999999999999988
Q ss_pred --eEEEEcccccccC-ccHHHHhccCC----CCCHHHHHHH----HHHhhhhhh-HhhccCCCccccCCCCCCCChHHHH
Q 000702 516 --TAAYVSQSAWIQS-GNIEENILFGS----PMDKAKYKKV----IHACSLKKD-LELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 516 --~i~~v~Q~~~l~~-~ti~~Ni~~g~----~~~~~~~~~~----~~~~~l~~~-~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
++|+++|..-||+ -||+||+.|.. ..+++.+++. +++++|..+ .+.+| ..||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 3899999999885 69999999952 2445444443 456666665 44444 579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 660 (1343)
|+|||||+..||+++++|||||+|||.++.. |.++++.+.+ |.|+|+|||+++.+.. ||+|+++.||+|+..|+++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~-~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGV-IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHH-HHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999998654 4666755433 8999999999998765 9999999999999999999
Q ss_pred HHHhcCcc
Q 000702 661 DLLQAGTD 668 (1343)
Q Consensus 661 ~l~~~~~~ 668 (1343)
|+.+.+..
T Consensus 232 el~~sd~P 239 (263)
T COG1127 232 ELLASDDP 239 (263)
T ss_pred HHHhCCCH
Confidence 99876543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=354.67 Aligned_cols=200 Identities=27% Similarity=0.413 Sum_probs=175.6
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999742 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred ecCCccccCC-chhhhcCCCCC-------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLEE-------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~~-------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++|+..... .+++++.++++.+++.+...+.| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 99999974211 13456888999999977665544 36999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
+++|++|||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999864 37899999999999866 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=361.11 Aligned_cols=213 Identities=26% Similarity=0.430 Sum_probs=182.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH-Hhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-LRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~-LR~~i 1174 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999964 36999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred eeecCCccccCC-chhhhcCCCC----CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE----EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~----~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+++||++.+|.+ |+++|+.... ..+ ++.+.+.++..++.+.. ......||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR-----------DSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHh-----------hcchhhCCHHHHHHHHHH
Confidence 999999999885 9999997431 112 22355566666654332 223357999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||++++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999988754 47899999999987755 999999999999999999999753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=359.58 Aligned_cols=210 Identities=27% Similarity=0.455 Sum_probs=184.3
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. .++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999975 359999999999999999999999999999999999999999999999999987653 4778999
Q ss_pred ecCCccccCC-chhhhcCCCC---CC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLE---EH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~---~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++|+.... .. .++++.+++++.++.++..+.+ .+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-----------NQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 11 2345778888888866544332 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
+++|+++||||||++||.++...+.+.|++..+ ++|+|++||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999987544 6899999999998766 999999999999999999999854
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=367.81 Aligned_cols=213 Identities=29% Similarity=0.438 Sum_probs=184.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC--CChHHHhhcc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST--IGLHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~--i~l~~LR~~i 1174 (1343)
|+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 359999999999999999999999999999999999999999999999999853 2345678999
Q ss_pred eeecCCc--cccCCchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDP--NLFEGTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp--~lF~gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.++... .+ .+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~~----~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------PP----HHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------Ch----hhCCHHHHHHHHHH
Confidence 9999998 578899999996311 122 2456778888888654332 22 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||++.+|++|||||||++||+.+...+.+.|++..+ ++|||+++|+++.+.. ||||++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998653 7899999999999875 999999999999999999998763
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=373.01 Aligned_cols=212 Identities=27% Similarity=0.422 Sum_probs=183.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999998764 356788999
Q ss_pred eecCCccccC-CchhhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFE-GTIRCNLDPL---EEHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~-gTIr~NLdp~---~~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
|+||++.+|. .|+++|+..+ ...+.. .+.++++.+++.+. +++.+ .+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999632 122322 34556777776543 33444 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998764 47899999999999875 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=352.13 Aligned_cols=201 Identities=32% Similarity=0.473 Sum_probs=172.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++|+|. ++++|+|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999985 47899999999999999999999999999999999999999999999999 48
Q ss_pred EEEcccc-cccCccHHHHhccCCC--------C---CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 518 AYVSQSA-WIQSGNIEENILFGSP--------M---DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 518 ~~v~Q~~-~l~~~ti~~Ni~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
|||||++ .-+.-||+|-+.+|+- . |.+...++++.+++.+.. ......||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 9999996 4578899999999952 1 223445556666655432 245667999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcc-ccCCEEEEEeCCeEEEecChHHHH
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
.|||||+++|++++||||||+||....-++++.+.+.. .+|+|+|+|+|+++.. ..||++++|++|+++.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999987654433 3589999999999875 569999999999999999999887
Q ss_pred hc
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 53
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=363.67 Aligned_cols=224 Identities=25% Similarity=0.387 Sum_probs=187.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-----cceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA-----CGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~--i~l~ 1168 (1343)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999974 36999999999999999999999999999999999999874 8999999999975 3445
Q ss_pred HHhhcceeecCCccccCC-chhhhcCCC---CCC-CHHH----HHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1169 DLRSRLGIIPQDPNLFEG-TIRCNLDPL---EEH-SDRE----IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~g-TIr~NLdp~---~~~-sd~e----i~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
.+|++++|+||+|.+|.+ |+++|+... ... .+++ ..+.++..++.+.+ +..++.++ .+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~----~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA----TGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc----ccCCHHHH
Confidence 778899999999999985 999999631 111 2333 33445556655433 22344443 68999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHH
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eL 1318 (1343)
||++||||++++|++|||||||++||..+...+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999886 999999999999999999999
Q ss_pred hhcCCcHHHH
Q 000702 1319 LEDKSSMFLK 1328 (1343)
Q Consensus 1319 l~~~~~~f~~ 1328 (1343)
++++...+.+
T Consensus 235 ~~~~~~~~~~ 244 (252)
T PRK14272 235 FTNPRDERTE 244 (252)
T ss_pred HhCcCcHHHH
Confidence 8776554543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=358.10 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=179.6
Q ss_pred eEEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---H
Q 000702 1096 TIELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---L 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---L 1170 (1343)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hhcceeecCCccccCC-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1171 -RSRLGIIPQDPNLFEG-TIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1171 -R~~i~iVpQdp~lF~g-TIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
+++++++||+|.+|.+ |+++|+... ... ..+++.++++..++.+.....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999885 999998631 111 2345788899999877655443 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEEeee
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~ive~ 1312 (1343)
++|||||+++|++|||||||++||+++...+.+.|++..+ ++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999987642 6899999999999888999999999999874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=365.02 Aligned_cols=222 Identities=24% Similarity=0.424 Sum_probs=190.1
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--C
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--I 1165 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i 1165 (1343)
..-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 3346999999999974 3599999999999999999999999999999999999863 59999999999864 3
Q ss_pred ChHHHhhcceeecCCccccCCchhhhcCCCCC------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEE------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
+...+|++++|+||++.+|..|+++|+..... ..++++.++++.+++.+.+.. -++ .....||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLK----EKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---Hhc----CCcccCCHHHH
Confidence 44567889999999999999999999964211 124456778888888655432 122 33468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEe---------CCEE
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS---------DGRV 1309 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~---------~G~i 1309 (1343)
||++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999988778999999999999865 99999997 8999
Q ss_pred eeecChhHHhhcCC
Q 000702 1310 AEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1310 ve~g~p~eLl~~~~ 1323 (1343)
++.|+++++..++.
T Consensus 248 ~~~g~~~~~~~~~~ 261 (274)
T PRK14265 248 VEFSPTEQMFGSPQ 261 (274)
T ss_pred EEeCCHHHHHhCCC
Confidence 99999999987543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=364.57 Aligned_cols=219 Identities=24% Similarity=0.421 Sum_probs=186.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~l~ 1168 (1343)
.++++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999743 599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred HHhhcceeecCCccccC-CchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1169 DLRSRLGIIPQDPNLFE-GTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~-gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
.+|+.++++||++.+|. .|+++|+... ...+ ++.+.++++.+++.+.+.. .++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLD----KPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---Hhh----CCcccCCHHHH
Confidence 78889999999999997 5999999631 1111 2456778888888644321 122 33468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEe------CCEEeee
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLS------DGRVAEF 1312 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~------~G~ive~ 1312 (1343)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999865 99999997 8999999
Q ss_pred cChhHHhhcCC
Q 000702 1313 DTPGRLLEDKS 1323 (1343)
Q Consensus 1313 g~p~eLl~~~~ 1323 (1343)
|+|++++.++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999986543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=361.41 Aligned_cols=219 Identities=25% Similarity=0.409 Sum_probs=188.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecC-CCChHH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDIS-TIGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~-~i~l~~ 1169 (1343)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999974 4699999999999999999999999999999999999986 5999999999986 445667
Q ss_pred HhhcceeecCCccccCCchhhhcCCCC---CC-C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1170 LRSRLGIIPQDPNLFEGTIRCNLDPLE---EH-S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~-s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
+|+.++|+||+|.+|.+|+++|+.... .. . ++++.++++.+++.+.+.. .++ .....||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~----~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLK----SHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---Hhh----cCcccCCHHHHHH
Confidence 889999999999999999999997421 11 1 2345667888887654421 122 3346899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
++||||++.+|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988777899999999999876 99999999999999999999876
Q ss_pred cCC
Q 000702 1321 DKS 1323 (1343)
Q Consensus 1321 ~~~ 1323 (1343)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=356.94 Aligned_cols=197 Identities=31% Similarity=0.445 Sum_probs=170.2
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 35999999999999999999999999999999999999999999999998874 468899999
Q ss_pred cCCccc---cCCchhhhcCCCCC-----------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1178 PQDPNL---FEGTIRCNLDPLEE-----------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1178 pQdp~l---F~gTIr~NLdp~~~-----------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
||+|.+ |..|+++|+..... ..++++.++++..++.++..+. ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999986 56899999963211 1234678889999987655432 2479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
|||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998764 57899999999999876 8999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=373.96 Aligned_cols=228 Identities=21% Similarity=0.331 Sum_probs=188.9
Q ss_pred eEEEEEEEEEEcC--CCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC----CCcceEEEcCeecCCCChHH
Q 000702 1096 TIELIDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE----PACGRIIIDNIDISTIGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~----~~~G~I~IdG~di~~i~l~~ 1169 (1343)
-|+++|++++|+. +...+|+||||+|++||++||||+||||||||+++|.|+.+ |++|+|.+||+|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22459999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----hcceeecCCccc--c-CCchhhhcCC----C---CC------CCHHHHHHHHHHcCCchHHhcccCCCCccccc
Q 000702 1170 LR----SRLGIIPQDPNL--F-EGTIRCNLDP----L---EE------HSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229 (1343)
Q Consensus 1170 LR----~~i~iVpQdp~l--F-~gTIr~NLdp----~---~~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e 1229 (1343)
++ ++|++|||+|.. + ..||.+|+.. . .. ...+++.++|++++|.+.-.. ++ .
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~~----~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----MR----S 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----Hh----C
Confidence 53 479999999963 3 2488888741 1 00 113467889999999753211 11 1
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeC
Q 000702 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSD 1306 (1343)
Q Consensus 1230 ~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~ 1306 (1343)
....||||||||++|||||+.+|+|||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2257999999999999999999999999999999999999999999998653 7899999999999966 999999999
Q ss_pred CEEeeecChhHHhhcCCcHHHH-HHH
Q 000702 1307 GRVAEFDTPGRLLEDKSSMFLK-LVT 1331 (1343)
Q Consensus 1307 G~ive~g~p~eLl~~~~~~f~~-l~~ 1331 (1343)
|+|+|.|+++++++++...|.+ +..
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999876555654 443
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=367.46 Aligned_cols=224 Identities=24% Similarity=0.362 Sum_probs=189.3
Q ss_pred CceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCCC--C
Q 000702 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDISTI--G 1166 (1343)
Q Consensus 1094 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i--~ 1166 (1343)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346999999999964 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred hHHHhhcceeecCCccccCCchhhhcCCCC---CC-C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1167 LHDLRSRLGIIPQDPNLFEGTIRCNLDPLE---EH-S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1167 l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~---~~-s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+. +.++. ....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDK----NALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhC----ChhhCCHHH
Confidence 345788999999999999999999997421 11 1 234667888888754332 12233 346799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
|||++|||||+++|++|||||||++||.++...+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcCCcHH
Q 000702 1318 LLEDKSSMF 1326 (1343)
Q Consensus 1318 Ll~~~~~~f 1326 (1343)
+.+++...+
T Consensus 268 ~~~~~~~~~ 276 (286)
T PRK14275 268 LFTNPKDRM 276 (286)
T ss_pred HHhCCCcHH
Confidence 987654434
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=375.73 Aligned_cols=212 Identities=27% Similarity=0.443 Sum_probs=184.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+++|+.. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++|+
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999743 5999999999999999999999999999999999999999999999999997654 56788999
Q ss_pred eecCCccccC-CchhhhcCCCC---CCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFE-GTIRCNLDPLE---EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~-gTIr~NLdp~~---~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
|+||++.+|. .|+++|+..+. ..+. +.+.++++.++|.+. .+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-------~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-------hCCCh----hhCCHHHHHHHHHHHH
Confidence 9999999874 59999996422 1222 234566777776543 34444 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|+.+|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.+ ||||++|++|+++..|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47999999999999976 999999999999999999999764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=377.28 Aligned_cols=204 Identities=21% Similarity=0.309 Sum_probs=177.7
Q ss_pred cccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCe----ecCCCChHHHh----hcceeecCCccc
Q 000702 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI----DISTIGLHDLR----SRLGIIPQDPNL 1183 (1343)
Q Consensus 1112 ~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~----di~~i~l~~LR----~~i~iVpQdp~l 1183 (1343)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+| ++|+||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 67777665543 579999999999
Q ss_pred cC-CchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1184 FE-GTIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1184 F~-gTIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
|. .|+++|+.... ..+ .+...++++.++|.++....| .+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 69999996321 122 235678899999977654433 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHH
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f 1326 (1343)
|||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 99999999999999999999988654 7899999999999754 99999999999999999999997765544
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=369.67 Aligned_cols=221 Identities=27% Similarity=0.462 Sum_probs=190.0
Q ss_pred CCceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCcceEEEcCeecCCC--
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-----PACGRIIIDNIDISTI-- 1165 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i-- 1165 (1343)
.+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...
T Consensus 42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3446999999999975 359999999999999999999999999999999999986 6899999999998753
Q ss_pred ChHHHhhcceeecCCccccCCchhhhcCCCC--------------------CCCHHHHHHHHHHcCCchHHhcccCCCCc
Q 000702 1166 GLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE--------------------EHSDREIWEALDKSQLGDIVRGKDQKLET 1225 (1343)
Q Consensus 1166 ~l~~LR~~i~iVpQdp~lF~gTIr~NLdp~~--------------------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt 1225 (1343)
+...+|++++|+||++.+|.+|+++|+.... +..++++.++++.+++.+.+. .
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------D 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------H
Confidence 4567889999999999999999999997321 011345778888888754432 2
Q ss_pred ccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEE-EE
Q 000702 1226 PVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLV-LV 1303 (1343)
Q Consensus 1226 ~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI-lv 1303 (1343)
.......+||||||||++|||||+++|+||||||||++||..+...+.+.|++..++.|+|+|+|+++.+.. |||| ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 234455789999999999999999999999999999999999999999999988777899999999999866 9997 57
Q ss_pred EeCCEEeeecChhHHhhcC
Q 000702 1304 LSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1304 l~~G~ive~g~p~eLl~~~ 1322 (1343)
|++|++++.|+++++.+.+
T Consensus 273 l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 273 LTGGELVEYDDTDKIFENP 291 (305)
T ss_pred ecCCEEEEeCCHHHHHhCc
Confidence 8999999999999998654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=356.00 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=183.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++||+++|+.. ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999742 249999999999999999999999999999999999999999999999887654 3568999
Q ss_pred ecCCccccCC-chhhhcCCC-C-C-----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL-E-E-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~-~-~-----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++|+... . . ..++++.++++.+++.+.+.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999732 1 1 12456889999999987766554 36999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||||++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998653 7899999999999865 999999999999999999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=370.96 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=187.3
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 889999999964 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred ecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++||.... ..+ .+++.++++..++.+...+ . ..+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-------K----IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-------c----hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 122 3457778888888665432 2 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
+++|++|+|||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||||++|++|+++..|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999988778999999999999876 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=363.04 Aligned_cols=213 Identities=22% Similarity=0.343 Sum_probs=182.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i 1174 (1343)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999964 369999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred eeecCCccccCC-chhhhcCCCCC-------------------CC---HHHHHHHHHHcCCchHHhcccCCCCcccccCC
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE-------------------HS---DREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~-------------------~s---d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1231 (1343)
+++||+|.+|.+ |+++|+..... .. .+.+.++++..++.+.. ....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-----------NRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-----------hCCh
Confidence 999999999986 99999974210 00 12345556666654332 3334
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCE
Q 000702 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGR 1308 (1343)
Q Consensus 1232 ~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1308 (1343)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999987643 6899999999999866 99999999999
Q ss_pred EeeecChhHHhhc
Q 000702 1309 VAEFDTPGRLLED 1321 (1343)
Q Consensus 1309 ive~g~p~eLl~~ 1321 (1343)
+++.|+++++.++
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=363.00 Aligned_cols=211 Identities=26% Similarity=0.404 Sum_probs=185.9
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999999888888889999
Q ss_pred ecCCcc-ccCCchhhhcCCCC----C-------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHH
Q 000702 1177 IPQDPN-LFEGTIRCNLDPLE----E-------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244 (1343)
Q Consensus 1177 VpQdp~-lF~gTIr~NLdp~~----~-------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1244 (1343)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.... ....||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 45679999996421 0 123357888998888654433 225799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHhh
Q 000702 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1245 ARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||++.+|+++||||||++||+.+...+.+.|++..+ +.|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999987643 689999999999995 599999999999999999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=355.88 Aligned_cols=209 Identities=25% Similarity=0.360 Sum_probs=182.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||++.|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred eecCCccccCCchhhhcCCC----CC-CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1176 IIPQDPNLFEGTIRCNLDPL----EE-HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1176 iVpQdp~lF~gTIr~NLdp~----~~-~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
++||+|.+|..|+++|+... .. ..++++.++++..++.+.. ......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 1234566788888875321 122336899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEe-CCEEeeecChh
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLS-DGRVAEFDTPG 1316 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~-~G~ive~g~p~ 1316 (1343)
+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998643 789999999999998899999995 66777888875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.50 Aligned_cols=226 Identities=22% Similarity=0.322 Sum_probs=187.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC----CcceEEEcCeecCCCChHHHh
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP----ACGRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~----~~G~I~IdG~di~~i~l~~LR 1171 (1343)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 59999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hcceeecCCcc-ccC--CchhhhcCC-----CCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1172 SRLGIIPQDPN-LFE--GTIRCNLDP-----LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iVpQdp~-lF~--gTIr~NLdp-----~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
+.++|+||+|. .|. .|+.+|+.. .....+++++++++.+++.+.. +.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999985 444 477776531 1123456788999999886531 1223334689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998643 6899999999999865 99999999999999999999987
Q ss_pred cCCc-HHHHHHHHhc
Q 000702 1321 DKSS-MFLKLVTEYS 1334 (1343)
Q Consensus 1321 ~~~~-~f~~l~~~~~ 1334 (1343)
++.. .++.++....
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 231 APKHAVTRSLVSAHL 245 (254)
T ss_pred CCCCHHHHHHHHhhh
Confidence 6544 5666665443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=355.20 Aligned_cols=203 Identities=29% Similarity=0.387 Sum_probs=175.4
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH---Hhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR~~ 1173 (1343)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred ceeecCCcccc-CCchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1174 LGIIPQDPNLF-EGTIRCNLDPL---EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1174 i~iVpQdp~lF-~gTIr~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
++|+||+|.+| ..|+++|+... ...++ +++.++++..++.+...+.+ .+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-----------IQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------hhCCHHHHHHHHHH
Confidence 99999999874 67999999742 12232 24667888888866544322 57999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999764 46899999999999976 89999999999853
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=355.68 Aligned_cols=206 Identities=27% Similarity=0.393 Sum_probs=172.9
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh---HHHh
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL---HDLR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l---~~LR 1171 (1343)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999988763 5678
Q ss_pred hcceeecCCc--ccc-CCchhhhcCC----CC-CCCHHH---H-HHHHHHcCCc-hHHhcccCCCCcccccCCCCCChhH
Q 000702 1172 SRLGIIPQDP--NLF-EGTIRCNLDP----LE-EHSDRE---I-WEALDKSQLG-DIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1172 ~~i~iVpQdp--~lF-~gTIr~NLdp----~~-~~sd~e---i-~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
++++|+||+| .++ ..|+++|+.. .. ...+++ . .++++..++. +.. .....+|||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~ 150 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVL-----------NRYPHELSGGQ 150 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHh-----------hCCchhcCHHH
Confidence 8999999999 344 4699999852 11 111221 1 2556666663 222 22335799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-ccCEEEEEeCCEEeeec
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g 1313 (1343)
|||++|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998754 789999999999987 49999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=363.53 Aligned_cols=201 Identities=32% Similarity=0.439 Sum_probs=171.7
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 519 (1343)
.|+++|++..|.+ ..+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|. +|+
T Consensus 3 ~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 5899999999853 12999999999999999999999999999999999999999999999983 899
Q ss_pred Eccccccc-CccHHHHhccCCCCC-------HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQ-SGNIEENILFGSPMD-------KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~-~~ti~~Ni~~g~~~~-------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
|+|+.-++ +.||+|||.||.... +++.+++.+.+++.+.++ .+...||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 99998776 569999999997642 345666666666666554 45568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCcc-ccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
.++|++++||||+|+||++....+-.++.+... -+.|+|.|||+.... ..+|+|++|++|+|.+.|++.|+..+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999997777655433221 378999999998765 46999999999999999999999764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=360.84 Aligned_cols=222 Identities=24% Similarity=0.358 Sum_probs=188.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC--C---CcceEEEcCeecCC--CChH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE--P---ACGRIIIDNIDIST--IGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~--i~l~ 1168 (1343)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 469999999999999999999999999999999999975 4 58999999999864 3345
Q ss_pred HHhhcceeecCCccccCCchhhhcCCC---CC--C---CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPL---EE--H---SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~---~~--~---sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
.+|++++|+||+|.+|..|+++|+... .. . .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD-------HLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh-------HHhcCcccCCHHHHH
Confidence 678899999999999999999999631 11 1 13456777888877544321 122334689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCCcHH
Q 000702 1320 EDKSSMF 1326 (1343)
Q Consensus 1320 ~~~~~~f 1326 (1343)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7655443
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=354.22 Aligned_cols=200 Identities=26% Similarity=0.457 Sum_probs=173.3
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999964 369999999999999999999999999999999999999999999999998753 56789999
Q ss_pred ecCCccccCC-chhhhcCCCC---CC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLE---EH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~---~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||++.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999985321 11 13456777888887654432 2357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
+.+|++|||||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 46899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=359.70 Aligned_cols=223 Identities=22% Similarity=0.380 Sum_probs=184.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCee-----cCCCChHH-
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID-----ISTIGLHD- 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~d-----i~~i~l~~- 1169 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5999999999974 369999999999999999999999999999999999999999999999999 87776554
Q ss_pred ---HhhcceeecCCcc--ccC-CchhhhcCC----CCCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCC
Q 000702 1170 ---LRSRLGIIPQDPN--LFE-GTIRCNLDP----LEEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWS 1235 (1343)
Q Consensus 1170 ---LR~~i~iVpQdp~--lF~-gTIr~NLdp----~~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1235 (1343)
.|+.++|+||+|. ++. .|+++|+.. +.... .+++.++++..++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 333 477877641 11111 234455666666532 12234457899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1236 gGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
||||||++|||||+++|+||||||||++||+++...+.+.|++..+ +.|+|+|||+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHH
Q 000702 1313 DTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1313 g~p~eLl~~~~~~f~~l~ 1330 (1343)
|+++++..++...|.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred CCHHHHhcCCCCHHHHHH
Confidence 999999876555565443
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=358.74 Aligned_cols=225 Identities=28% Similarity=0.400 Sum_probs=190.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcC------eecCCCChHH
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN------IDISTIGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG------~di~~i~l~~ 1169 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999974 3699999999999999999999999999999999999999997666654 6777777778
Q ss_pred HhhcceeecCCccccCC-chhhhcCCC---CCC-CH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHH
Q 000702 1170 LRSRLGIIPQDPNLFEG-TIRCNLDPL---EEH-SD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~g-TIr~NLdp~---~~~-sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1240 (1343)
+|++++|+||+|.+|.+ |+++|+... ... .. +.+.++++..++.+.+.. .+ ...+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~----~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD---RL----NSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh---hh----cCCcccCCHHHHH
Confidence 89999999999999976 999999732 111 22 235677888888654421 12 2344679999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHh
Q 000702 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1241 rl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
|++||||++++|++|+|||||++||..+.+.+.+.|++..+++|+|++||+++.+. -||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999998777799999999999995 49999999999999999999998
Q ss_pred hcCCcHHHHH
Q 000702 1320 EDKSSMFLKL 1329 (1343)
Q Consensus 1320 ~~~~~~f~~l 1329 (1343)
+.+...+.+.
T Consensus 241 ~~~~~~~~~~ 250 (257)
T PRK14246 241 TSPKNELTEK 250 (257)
T ss_pred hCCCcHHHHH
Confidence 7665545444
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=356.39 Aligned_cols=210 Identities=24% Similarity=0.418 Sum_probs=185.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. + +|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999974 2 8999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred ecCCccccC-CchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFE-GTIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||++.+|. .|+++|+... ... .++++.++++.+++.+++.+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999631 111 2345778899999877665443 46999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998643 7999999999999876 9999999999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=353.26 Aligned_cols=200 Identities=30% Similarity=0.490 Sum_probs=173.0
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCC--CChHHHhhcc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST--IGLHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~--i~l~~LR~~i 1174 (1343)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999975 369999999999999999999999999999999999999999999999999853 3456678899
Q ss_pred eeecCCccccC-CchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHH
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1245 (1343)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+.+ .+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----------cccCHHHHHHHHHH
Confidence 99999999986 5999999642 1222 234667778877765544332 57999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEE
Q 000702 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309 (1343)
Q Consensus 1246 RALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~i 1309 (1343)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999764 37899999999999975 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=353.50 Aligned_cols=214 Identities=32% Similarity=0.544 Sum_probs=187.9
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 518 (1343)
++++|+++.|....++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 3688999998543335799999999999999999999999999999999999999999999987 389
Q ss_pred EEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000702 519 YVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597 (1343)
Q Consensus 519 ~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~i 597 (1343)
|++|++++++.|++||+.++.. ...++..+.++.+++.+.+..+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 234455566777788878888999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000702 598 YLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 598 llLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
+||||||++||+.+.+.+.+. +....+|+|+|++||+++.+..||+|++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~-l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEA-LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 999999999999998877654 44444789999999999988889999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=358.78 Aligned_cols=212 Identities=22% Similarity=0.257 Sum_probs=178.8
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCcceEEEcCeecCCCChHHH-hhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI--EPACGRIIIDNIDISTIGLHDL-RSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~l~~L-R~~ 1173 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999974 36999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred ceeecCCccccCC-chhhhcCCC----CC------CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPL----EE------HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~----~~------~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1238 (1343)
++++||+|.+|.+ |+++|+... .. .+ ++.+.++++..++.+.. ++..+. ..|||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999986 899987421 00 11 23467777888775321 122221 2499999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc--cCEEEEEeCCEEeeecCh
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID--SDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1239 rQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~DrIlvl~~G~ive~g~p 1315 (1343)
|||++|||||+++|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999864 36899999999999976 799999999999999999
Q ss_pred hHHh
Q 000702 1316 GRLL 1319 (1343)
Q Consensus 1316 ~eLl 1319 (1343)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 8654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=350.70 Aligned_cols=201 Identities=23% Similarity=0.412 Sum_probs=176.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++||+++|+. +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ ..|+.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 578999999999999999999999999999999999999999999999987643 46788999
Q ss_pred ecCCccccCC-chhhhcCC-CC-C-----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDP-LE-E-----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp-~~-~-----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+...+.| .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999863 11 1 12456788999999977665544 36999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecC
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~ 1314 (1343)
+++|+++||||||++||.++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998653 7899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=359.76 Aligned_cols=211 Identities=23% Similarity=0.338 Sum_probs=184.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--------cceEEEcCeecCCCChH
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA--------CGRIIIDNIDISTIGLH 1168 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~--------~G~I~IdG~di~~i~l~ 1168 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999888888
Q ss_pred HHhhcceeecCCcc-ccCCchhhhcCCCC--C------C---CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCCh
Q 000702 1169 DLRSRLGIIPQDPN-LFEGTIRCNLDPLE--E------H---SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~-lF~gTIr~NLdp~~--~------~---sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
.+|+.++++||++. +|..|+++|+.... . . .++.++++++..++.+... .....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-----------RDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 88889999999986 57889999996421 0 1 1234677888888765432 23357999
Q ss_pred hHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEE
Q 000702 1237 GQRQLVSLGRALL---------KQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVL 1304 (1343)
Q Consensus 1237 GQrQrl~LARALL---------~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl 1304 (1343)
|||||++|||||+ .+|++|||||||++||+++...+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999997653 6899999999999864 9999999
Q ss_pred eCCEEeeecChhHHhh
Q 000702 1305 SDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1305 ~~G~ive~g~p~eLl~ 1320 (1343)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999975
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=346.26 Aligned_cols=216 Identities=27% Similarity=0.432 Sum_probs=190.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCe---ecCCCChHHHhh
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNI---DISTIGLHDLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~---di~~i~l~~LR~ 1172 (1343)
.|+++|++..|+.- ++++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.+++..+ .+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 37788888888753 5899999999999999999999999999999999999999999999999 88775444 46
Q ss_pred cceeecCCccccC-CchhhhcCCCC---------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1173 RLGIIPQDPNLFE-GTIRCNLDPLE---------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~-gTIr~NLdp~~---------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
+||+|+|+..||. .||.+||.++- ...+..+.+.|+.++|..+-++-| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999996 59999997543 123455777899999987776666 46899999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
||||||...|++|+||||.++||..-.+.+++-|++... ++|+++|||+.+.+.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999987543 6899999999988755 9999999999999999999999
Q ss_pred hcCCcHH
Q 000702 1320 EDKSSMF 1326 (1343)
Q Consensus 1320 ~~~~~~f 1326 (1343)
..+++.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9998877
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=345.34 Aligned_cols=200 Identities=35% Similarity=0.489 Sum_probs=170.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.|.++|++..|. ..++++|||++|+.||++|+.|||||||||||++|+|+..|+.|.|.++|.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 477888888875 367899999999999999999999999999999999999999999999984
Q ss_pred EEEEccccccc-CccHHHHhccCCCC---------CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSPM---------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 517 i~~v~Q~~~l~-~~ti~~Ni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
||||+|+.-+| ..||.|||.||.+. .+.+..+.++.|+|+.--+ .....||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 79999997765 78999999999732 2345566677777754333 345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEecCCCcc-ccCCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-A-NKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~-~~t~i~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|||||..+|++|+||||++|||++..+.+-. .+.... + |.|+++|||+.++. ..||+|++|++|+|...|+++|+.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~-wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHH-HHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 9999999999999999999999999776644 343332 3 88999999999875 569999999999999999999987
Q ss_pred hc
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
..
T Consensus 227 ~~ 228 (345)
T COG1118 227 DH 228 (345)
T ss_pred cC
Confidence 54
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=350.29 Aligned_cols=211 Identities=29% Similarity=0.513 Sum_probs=189.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++++|.. .+++++|+||++++|++++|+||||||||||+++|+|+.+|.+|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4889999999842 34699999999999999999999999999999999999999999999987 28
Q ss_pred EEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000702 518 AYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 518 ~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ 596 (1343)
+|++|+++++..|++||+.++.+ ....+..+.++.+++.+.++.+|.|+++.++....+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 34456667777888888889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 597 illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999887765 4555556899999999999888899999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=354.48 Aligned_cols=215 Identities=27% Similarity=0.422 Sum_probs=192.4
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
.+.++++|++++|+. ..+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 346999999999853 235799999999999999999999999999999999999999999999987
Q ss_pred eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCC
Q 000702 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~ 595 (1343)
.++|++|+|+++++|++||+........+++.++++..++.+.++.+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999776444455667777888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 596 DIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 596 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+++||||||++||+++.+.+++ .+....+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 176 SILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999998776654 45555568999999999999888999999999999999999998764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=338.39 Aligned_cols=193 Identities=31% Similarity=0.422 Sum_probs=158.0
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
++++|++..|..+. ..++|+++||+|++||+++|+|||||||||||++|.|...|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889998876432 24799999999999999999999999999999999999999999999998
Q ss_pred --eEEEEccccc-ccCccHHHHhccCCC----CC---HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 --TAAYVSQSAW-IQSGNIEENILFGSP----MD---KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 --~i~~v~Q~~~-l~~~ti~~Ni~~g~~----~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.+|||+|+.. +.+.|++|||.+... .. .++.++.++..+|.+.. .......|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~----------~~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL----------LKKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhh----------ccCCchhcCHHHHHHH
Confidence 3899999965 568899999985322 11 22333333433443222 1245678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccccCCEEEEEeCCeEE
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPAADFILVLKEGRII 654 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~ 654 (1343)
||||||+.+|++++.||||.+||.++++.+++.+.... ..|+|+|+|||+......|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999987654433 3489999999999999999999999999954
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=373.07 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=186.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----ChHHHhh
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI----GLHDLRS 1172 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~l~~LR~ 1172 (1343)
|++ |++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999742 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred cceeecCCccccC-CchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1173 RLGIIPQDPNLFE-GTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~-gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
+++|+||++.+|. .|+++|+... ....++++.++++.+++.++..+.| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999996 5999999743 2334567889999999877665543 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++..++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 9999999999999999999999999987654 6899999999998866 999999999999999999999987753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.90 Aligned_cols=203 Identities=27% Similarity=0.437 Sum_probs=177.0
Q ss_pred EEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCcccc
Q 000702 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF 1184 (1343)
Q Consensus 1105 ~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF 1184 (1343)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 369999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred CC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000702 1185 EG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256 (1343)
Q Consensus 1185 ~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILl 1256 (1343)
.+ |+++|+.... ..+ ++++.++++.+++.+... ..+ .+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-------RPV----GTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-------Cch----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999996421 112 345778889888865433 233 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1257 LDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1257 LDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 47899999999999876 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=364.09 Aligned_cols=202 Identities=33% Similarity=0.455 Sum_probs=173.5
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EE
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AA 518 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~ 518 (1343)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.++|. ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 3699999999985 568999999999999999999999999999999999999999999999994 79
Q ss_pred EEccccccc-CccHHHHhccCCC----CC-H---HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHH
Q 000702 519 YVSQSAWIQ-SGNIEENILFGSP----MD-K---AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589 (1343)
Q Consensus 519 ~v~Q~~~l~-~~ti~~Ni~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lAR 589 (1343)
+|+|+.-|| +.||+|||.||.. .. + +++.++++..+|.+.- ..+...|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHHH
Confidence 999998776 6899999999976 12 2 2455555555554422 3567789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCc-cccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 590 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||..+|+++|||||+||||.+...++-.++..... .|.|.|+|||+.+. +..+|||++|++|+|...|+++|+...
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 99999999999999999999998887666543322 39999999999975 677999999999999999999999865
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=351.02 Aligned_cols=214 Identities=35% Similarity=0.580 Sum_probs=189.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------AA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 518 (1343)
++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 368899998842 357999999999999999999999999999999999999999999999872 79
Q ss_pred EEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000702 519 YVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597 (1343)
Q Consensus 519 ~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~i 597 (1343)
|++|++++++.|++||+.++.. ..+....+.++.+++.+.+..+|.|+++.++.++.+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 334455666777888888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCcc
Q 000702 598 YLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668 (1343)
Q Consensus 598 llLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 668 (1343)
+||||||++||+.+.+.+.+. +....+|+|+|++||+++.+..||++++|++|++++.|+.+++......
T Consensus 159 lllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~ 228 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAA-LRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccH
Confidence 999999999999998877654 4444458999999999999888999999999999999999888765443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=350.38 Aligned_cols=213 Identities=31% Similarity=0.540 Sum_probs=189.0
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 518 (1343)
++++|++++|.. ..+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPG-DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCC-CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468899999853 224799999999999999999999999999999999999999999999987 279
Q ss_pred EEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000702 519 YVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597 (1343)
Q Consensus 519 ~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~i 597 (1343)
|++|++++++.|++||+.++.. .....+.+.++.+.+.+.++.+|.|.++..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 344556666777788888889999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000702 598 YLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 598 llLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 666 (1343)
+||||||++||+.+.+.+.+ ++....+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 99999999999999877755 455555789999999999998889999999999999999998886553
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=333.75 Aligned_cols=215 Identities=26% Similarity=0.447 Sum_probs=184.0
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH-Hhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-LRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~-LR~~i 1174 (1343)
-++++|++..|++. .+|+||||++++||+++++||||+|||||+++|+|+.++.+|+|.++|.||...++++ .|..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 37899999999863 6999999999999999999999999999999999999999999999999999999887 58889
Q ss_pred eeecCCccccCC-chhhhcCCCCC------CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE------HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~------~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
++|||...+|.. ||.|||..... ..+..+.++.+. .| -|.......+.+|||||+|.++||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FP-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Ch-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999976 99999974311 111112222221 11 23333344567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
|..+||+|+|||||.+|-+.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|+++||.+++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998764 5699999999988765 9999999999999999999999764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.89 Aligned_cols=202 Identities=32% Similarity=0.504 Sum_probs=175.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|++|+|+++ .++|+|+|++|++|+.++|+|+||||||||++++.|.++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 57899999998653 68999999999999999999999999999999999999999999998873
Q ss_pred EEEEcccc--cccCccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 517 AAYVSQSA--WIQSGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 517 i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
+|||+|+| .+|..||.|.+.||.. .++ ++.+++++.|++.+.. .....+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 89999999 6899999999999964 333 3455666677765543 34567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|.+|..+|+++|||||||+||+...+.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999988887654333334 6899999999998866 999999999999999999888754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=397.73 Aligned_cols=227 Identities=22% Similarity=0.306 Sum_probs=154.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHh------ccc---CCCcce------------
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALF------RLI---EPACGR------------ 1154 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~------rl~---~~~~G~------------ 1154 (1343)
.++++|++. ..|+|+||+|++||.+||+|.+|||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 588888862 2599999999999999999999999999998764 211 122233
Q ss_pred EEEcCeecCCC---------C-hHHHhhcce---------eecCCccccC-----------CchhhhcCCCCC-------
Q 000702 1155 IIIDNIDISTI---------G-LHDLRSRLG---------IIPQDPNLFE-----------GTIRCNLDPLEE------- 1197 (1343)
Q Consensus 1155 I~IdG~di~~i---------~-l~~LR~~i~---------iVpQdp~lF~-----------gTIr~NLdp~~~------- 1197 (1343)
|.||-.+|..- + .+.+|.-.+ +-++.-.+.. |+++.|+.+..+
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 33443333211 1 123344332 3233322221 455555542211
Q ss_pred -----------------CCHHH-----HHHHHHHc----CCc---hHHhcccCCCCc-ccccCCCCCChhHHHHHHHHHH
Q 000702 1198 -----------------HSDRE-----IWEALDKS----QLG---DIVRGKDQKLET-PVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1198 -----------------~sd~e-----i~~aL~~~----~L~---~~i~~lp~gLdt-~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
.+-.| +.++++.. .+. +.+.. -||+. .++.....||||||||+.|||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~--vgL~~l~l~~~~~tLSgGEkQRl~LAra 844 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVD--VGLGYIKLGQPATTLSGGEAQRVKLAKE 844 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHH--CCCCcccccCCcccCCHHHHHHHHHHHH
Confidence 11111 22222221 000 11111 14543 3456667899999999999999
Q ss_pred HhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEE------eCCEEeeecChhH
Q 000702 1248 LLKQA---RILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVL------SDGRVAEFDTPGR 1317 (1343)
Q Consensus 1248 LL~~~---~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl------~~G~ive~g~p~e 1317 (1343)
|+++| +++||||||++||.++...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|+..|+|++
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999 9999999999999999999999998764 478999999999999999999999 7999999999999
Q ss_pred HhhcCCcHHHHHHH
Q 000702 1318 LLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1318 Ll~~~~~~f~~l~~ 1331 (1343)
+.+++++.=.+.+.
T Consensus 925 l~~~~~s~t~~~l~ 938 (943)
T PRK00349 925 VAKVEASYTGRYLK 938 (943)
T ss_pred HHhCcccHHHHHHH
Confidence 99877665544443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=363.64 Aligned_cols=213 Identities=31% Similarity=0.515 Sum_probs=189.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+.+|+. ...+|+||||+|++||.+|++||||||||||+++|.|++.|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999984 23699999999999999999999999999999999999999999999999998765 678899999
Q ss_pred eecCCccccCC-chhhhcCCCC-------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLE-------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~~-------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
|+||+|.++.. |++|||+.+. ...++.+.+.++..+|.+.- +.++ ..||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHHH
Confidence 99999998876 9999997532 12356788999999997622 2333 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK-D-CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++..|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998775 4 699999999999988 999999999999999999998754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=357.89 Aligned_cols=222 Identities=23% Similarity=0.330 Sum_probs=187.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---cceEEEcCeecCCCC-----h
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA---CGRIIIDNIDISTIG-----L 1167 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~---~G~I~IdG~di~~i~-----l 1167 (1343)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+ .
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999964 36999999999999999999999999999999999999986 499999999987542 3
Q ss_pred HHHhhcceeecCCccccCC-chhhhcCCCC---------------CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCC
Q 000702 1168 HDLRSRLGIIPQDPNLFEG-TIRCNLDPLE---------------EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231 (1343)
Q Consensus 1168 ~~LR~~i~iVpQdp~lF~g-TIr~NLdp~~---------------~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1231 (1343)
..+|++++|+||++.+|.+ |+++|+.... ....+++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998874 9999996321 1113457788888888655433 22
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCE
Q 000702 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGR 1308 (1343)
Q Consensus 1232 ~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1308 (1343)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4799999999999999999999999999999999999999999999865 37899999999998754 99999999999
Q ss_pred EeeecChhHHhhcCCcHHHHHHHHh
Q 000702 1309 VAEFDTPGRLLEDKSSMFLKLVTEY 1333 (1343)
Q Consensus 1309 ive~g~p~eLl~~~~~~f~~l~~~~ 1333 (1343)
+++.|+++++ . .....+++...
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhhh
Confidence 9999999997 2 23556665543
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=346.94 Aligned_cols=206 Identities=30% Similarity=0.449 Sum_probs=186.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|+++.|+. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRP-NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCC-CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 4789999999853 235799999999999999999999999999999999999999999999987 37
Q ss_pred EEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 000702 518 AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597 (1343)
Q Consensus 518 ~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~i 597 (1343)
+|++|++.+++.|++||+.+......++..+.++.+++.+.+..+|.|+++..++.+.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766666777778888889888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000702 598 YLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 598 llLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 658 (1343)
+||||||++||+.+.+.+.+ .+....+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999777755 4555556799999999999988899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=347.68 Aligned_cols=223 Identities=26% Similarity=0.414 Sum_probs=185.1
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC-C----CcceEEEcCeecCCCChHH
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE-P----ACGRIIIDNIDISTIGLHD 1169 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~-~----~~G~I~IdG~di~~i~l~~ 1169 (1343)
++++|+++.|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.++|.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999997543 368999999999999999999999999999999999997 3 5799999999999999876
Q ss_pred Hhh----cceeecCCccc-cCC--chhhhc----CCCCCC-C----HHHHHHHHHHcCCchH---HhcccCCCCcccccC
Q 000702 1170 LRS----RLGIIPQDPNL-FEG--TIRCNL----DPLEEH-S----DREIWEALDKSQLGDI---VRGKDQKLETPVLEN 1230 (1343)
Q Consensus 1170 LR~----~i~iVpQdp~l-F~g--TIr~NL----dp~~~~-s----d~ei~~aL~~~~L~~~---i~~lp~gLdt~v~e~ 1230 (1343)
+|+ .|++|||||.- |+- ||.+-+ ...... + .+...+.|+.+++.+- ...-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 543 79999999942 221 333222 111111 1 3457888999998753 22223
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCC
Q 000702 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDG 1307 (1343)
Q Consensus 1231 G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G 1307 (1343)
..||||||||+.||-||+.+|++||-||||++||..+.+.|.+.|++.. .++|+|+|||++..+.. ||||.||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 5789999999999999999999999999999999999999999998766 48999999999999876 9999999999
Q ss_pred EEeeecChhHHhhcCCcHHHHHH
Q 000702 1308 RVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1308 ~ive~g~p~eLl~~~~~~f~~l~ 1330 (1343)
+|||.|+.+++++++.--|.+..
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999999998876665444
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=356.14 Aligned_cols=201 Identities=24% Similarity=0.311 Sum_probs=174.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred ecCCccccC-CchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFE-GTIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+||++.+|. .|+++|+... .... ++++.++++..++.+...+. ..+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-----------IWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999642 1122 24577888888886554332 257999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEe--CCEEeeecCh
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLS--DGRVAEFDTP 1315 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~--~G~ive~g~p 1315 (1343)
+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998863 37999999999999865 99999998 5999998764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=314.36 Aligned_cols=198 Identities=31% Similarity=0.429 Sum_probs=169.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 520 (1343)
+.++++.|+|.. .=-..+++|++||++||+||||||||||+++|+|+..|.+|+|.++|. ++.+
T Consensus 2 l~L~~V~~~y~~-----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGH-----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCc-----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 567788998843 123578999999999999999999999999999999999999999983 7999
Q ss_pred cccccccC-ccHHHHhccCCC-------CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 521 SQSAWIQS-GNIEENILFGSP-------MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 521 ~Q~~~l~~-~ti~~Ni~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
+|+.-+|. -||++||.+|.. .+.++.+.+....+|....+.+|. +|||||||||||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99998884 799999999954 245667777778888888877774 79999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMT-ALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
++.+|++||||||||||.-..+....+.+. ..++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999887776543222 2258899999999998765 999999999999999999998754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=355.06 Aligned_cols=222 Identities=24% Similarity=0.324 Sum_probs=184.1
Q ss_pred eEEEEEEEEEEcCC-------CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH
Q 000702 1096 TIELIDLKVRYGEN-------LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~ 1168 (1343)
.|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 35699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhhcceeecCCcc--cc-CCchhhhcCC-C---CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCC
Q 000702 1169 ---DLRSRLGIIPQDPN--LF-EGTIRCNLDP-L---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234 (1343)
Q Consensus 1169 ---~LR~~i~iVpQdp~--lF-~gTIr~NLdp-~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1234 (1343)
.+|+.++++||++. ++ ..|+++|+.. . ...+ .+.+.++++..++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 46889999999983 43 4689999742 1 1111 2245666766666421 122334679
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1235 SgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
|+|||||++|||||+.+|+||||||||++||.++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987653 7899999999999975 99999999999999
Q ss_pred ecChhHHhhcCCcHHHH
Q 000702 1312 FDTPGRLLEDKSSMFLK 1328 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~~f~~ 1328 (1343)
.|+++++... ++.|..
T Consensus 233 ~g~~~~~~~~-~~~~~~ 248 (268)
T PRK10419 233 TQPVGDKLTF-SSPAGR 248 (268)
T ss_pred eCChhhccCC-CCHHHH
Confidence 9999999854 444443
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=348.61 Aligned_cols=202 Identities=26% Similarity=0.362 Sum_probs=176.6
Q ss_pred EEEEEEEEEEcCCC--CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH---HHh
Q 000702 1097 IELIDLKVRYGENL--PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH---DLR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~---~LR 1171 (1343)
++++|++++|+++. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred hcceeecCCccccC-CchhhhcCCCC----CCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1172 SRLGIIPQDPNLFE-GTIRCNLDPLE----EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~-gTIr~NLdp~~----~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
+.++++||+|.+|. .|+.+|+.+.. ..+. +++.++++++++.++..+.| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 69999996421 2222 34677888888876665544 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccccCEEEEEeCCEE
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~i 1309 (1343)
+||||++++|++|+|||||++||.++...+.+.|++..+ ++|+|+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988653 7999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=369.87 Aligned_cols=212 Identities=27% Similarity=0.416 Sum_probs=182.3
Q ss_pred EEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC----hHHHhhccee
Q 000702 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG----LHDLRSRLGI 1176 (1343)
Q Consensus 1101 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~----l~~LR~~i~i 1176 (1343)
|++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 24 999999999999999999999999999999999999999999999987542 3456888999
Q ss_pred ecCCccccCC-chhhhcCCC-CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL-EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~-~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
+||++.+|.+ |+++|+... .... ++.+.++++..++.+...+.| .+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999975 999999742 1111 234778888888866554433 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHHH
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f~ 1327 (1343)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++...|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999999999998653 6899999999999866 999999999999999999999987665543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=331.98 Aligned_cols=171 Identities=44% Similarity=0.726 Sum_probs=161.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999997643469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred ecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILl 1256 (1343)
+||+|.+|+.|+++|+ ||+|||||++||||++++|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCE
Q 000702 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGR 1308 (1343)
Q Consensus 1257 LDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1308 (1343)
|||||++||.++...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998777799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=346.66 Aligned_cols=204 Identities=26% Similarity=0.423 Sum_probs=178.8
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++.+++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999876422 357999
Q ss_pred ecCCccccC-CchhhhcCCC---CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1177 IPQDPNLFE-GTIRCNLDPL---EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~---~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
+||++.+|. .|+++|+... ...+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 5999998632 233567788999999987654432 2479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998764 37899999999999864 99999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=343.16 Aligned_cols=193 Identities=24% Similarity=0.325 Sum_probs=149.9
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.+-+.||+|.|+.. .|.+++++|-|.--.+|+||||+|.|||||+++|.|-++|+.|+..=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 46789999999765 468999999999999999999999999999999999999999976432 255688
Q ss_pred eecCCcc--c-cCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1176 IIPQDPN--L-FEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1176 iVpQdp~--l-F~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
..-|... | -..|--+.|.-.-..+-++-..+|...||....... .+ ..||||||-|+++|-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi------ki----kdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI------KI----KDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE------ee----eecCCcchHHHHHHHHhcCCC
Confidence 8888763 1 122444444321223456677888888775543221 11 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCE-EEEEeCCEEeee
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDL-VLVLSDGRVAEF 1312 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~Dr-Ilvl~~G~ive~ 1312 (1343)
+||||||||.+||.++-..+-++|+++ +..||+|+|+-..|..-|. .+|+++-.|-|.
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 999999999999999999999999876 3479999999988876553 566666555443
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=350.23 Aligned_cols=222 Identities=21% Similarity=0.364 Sum_probs=182.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCee-----cCCCChHH-
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID-----ISTIGLHD- 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~d-----i~~i~l~~- 1169 (1343)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ---HhhcceeecCCccc---cCCchhhhcCC----CCC----CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCC
Q 000702 1170 ---LRSRLGIIPQDPNL---FEGTIRCNLDP----LEE----HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWS 1235 (1343)
Q Consensus 1170 ---LR~~i~iVpQdp~l---F~gTIr~NLdp----~~~----~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1235 (1343)
+++.++++||+|.. +..|+.+|+.. +.. ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 34679999999852 23477778631 111 12345666677766642 11223346899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeee
Q 000702 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312 (1343)
Q Consensus 1236 gGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~ 1312 (1343)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999985 999999999999999
Q ss_pred cChhHHhhcCCcHHHHH
Q 000702 1313 DTPGRLLEDKSSMFLKL 1329 (1343)
Q Consensus 1313 g~p~eLl~~~~~~f~~l 1329 (1343)
|+++++..++...|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655445443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=327.66 Aligned_cols=205 Identities=24% Similarity=0.423 Sum_probs=168.8
Q ss_pred eEEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000702 451 AIQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 516 (1343)
.++++|+++.|.... -.++|+||||++.+||+.+|+|+||||||||.++|+|..+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 588999999985321 014999999999999999999999999999999999999999999999982
Q ss_pred -EEEEcccccc---cCccHHHHhccC-----CCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 517 -AAYVSQSAWI---QSGNIEENILFG-----SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 517 -i~~v~Q~~~l---~~~ti~~Ni~~g-----~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
|.+|+|||.- ..-||++-|.=+ .+-.+.+..++++..+|.... .......|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHHH
Confidence 7899999973 346777766422 112234466666666665432 234567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||||..+|+++|||||||+||+.+...|++-+.+.. ..+-|.|+|||++..+.+ ||||.||++|++++.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999987544322 246799999999999886 999999999999999999998765
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=342.11 Aligned_cols=176 Identities=29% Similarity=0.420 Sum_probs=130.3
Q ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCcc-ccCCchhhhcCCCC--
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPN-LFEGTIRCNLDPLE-- 1196 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~-lF~gTIr~NLdp~~-- 1196 (1343)
+|..||.+||+||||-||||++++|.|.++|++|+ ..+ -+++|=||--. -|+|||++-|.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 35567899999999999999999999999999998 222 24888888542 38899987663111
Q ss_pred CCCHHHHH-HHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000702 1197 EHSDREIW-EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275 (1343)
Q Consensus 1197 ~~sd~ei~-~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~ 1275 (1343)
.+.+.-.+ +..+-.+|.+. +|.+| .+|||||.||++||-||.+++++.+||||+|.||.+-.-.+-++
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i-------~e~~v----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDL-------LERPV----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcCccchHHH-------Hhccc----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 11111111 12222333222 33344 57999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEeccCcccccc-cCEEEEEeC--CEEeeecChhHHhh
Q 000702 1276 IRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSD--GRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1276 l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~--G~ive~g~p~eLl~ 1320 (1343)
||+.. .++|.++|-|++-.+.. +||++|++. |+=-.-..|..+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~ 547 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMRE 547 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHH
Confidence 98744 56899999999998865 999999983 32223335666654
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=347.89 Aligned_cols=208 Identities=29% Similarity=0.446 Sum_probs=181.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999974 3599999999999999999999999999999999999999999999987 34799
Q ss_pred eecCCccccC---CchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1176 IIPQDPNLFE---GTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1176 iVpQdp~lF~---gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 3889987543345677899999999997765432 2579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHHHHH
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKL 1329 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~l 1329 (1343)
++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.. +..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHHHH
Confidence 99999999999999999999999987643 7899999999999865 999999965 7999999999874 3556665
Q ss_pred H
Q 000702 1330 V 1330 (1343)
Q Consensus 1330 ~ 1330 (1343)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 5
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=331.36 Aligned_cols=170 Identities=32% Similarity=0.565 Sum_probs=157.4
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|+.. ++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4789999999743 5999999999999999999999999999999999999999999999999998765 677889999
Q ss_pred ecCCccccCC-chhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999973 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-ccCEEEEEeCCEE
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI-DSDLVLVLSDGRV 1309 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~i 1309 (1343)
||||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999864 3689999999999887 4999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=358.43 Aligned_cols=209 Identities=26% Similarity=0.409 Sum_probs=170.2
Q ss_pred ceEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------
Q 000702 450 VAIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------ 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 515 (1343)
..++++|++|+|.... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999985321 24799999999999999999999999999999999999999999999875
Q ss_pred -----------------eEEEEcccc--cccCccHHHHhccCCC---CCHHHHHHHHHHhhhhhhHhhccCCCc-cccCC
Q 000702 516 -----------------TAAYVSQSA--WIQSGNIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQ-TIIGD 572 (1343)
Q Consensus 516 -----------------~i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~-t~ig~ 572 (1343)
.++||+|+| ++++.||+|||.|+.. .+.+...+.. . +.++.+ |.. ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~--~---~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA--K---FYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH--H---HHHHHc--CCChhHhcC
Confidence 268999998 7899999999998742 2222221111 1 112222 222 34567
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCC
Q 000702 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEG 651 (1343)
Q Consensus 573 ~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G 651 (1343)
.+.+||||||||++|||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 88999999999999999999999999999999999999988887644332345899999999999874 59999999999
Q ss_pred eEEEecChHHHHhc
Q 000702 652 RIIQAGKYDDLLQA 665 (1343)
Q Consensus 652 ~i~~~g~~~~l~~~ 665 (1343)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=362.08 Aligned_cols=202 Identities=26% Similarity=0.385 Sum_probs=168.6
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
|+++|++++|+.++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999985322 34799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 -TAAYVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 -~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++|++|++.++. .|++||+.|+.. .+.+ +..++++..++.+ ........|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 3799999998884 799999998642 2222 2233333333322 234566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|||||+.+|+++|||||||+||+.+.+.+++. ++.+ . .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999888764 4443 2 38999999999999865 9999999999999999999987
Q ss_pred hc
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=340.34 Aligned_cols=205 Identities=36% Similarity=0.578 Sum_probs=181.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|+++.|.. ..+++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4789999999842 235799999999999999999999999999999999999999999999987 37
Q ss_pred EEEcccccccCccHHHHhccCCC-CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000702 518 AYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 518 ~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ 596 (1343)
+|++|+++++..|++||+.++.. .++++..+.++.+++.+.++..|.|++|.+.+...+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999988754 34556677888888888888999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEec
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAG 657 (1343)
Q Consensus 597 illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g 657 (1343)
++||||||++||+.+.+.+.+. +....+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999998877654 55554458999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=326.53 Aligned_cols=204 Identities=30% Similarity=0.430 Sum_probs=170.7
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
.|+++|++..|+ +++.+|+||||+|++||.++|+|+|||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 589999999986 357899999999999999999999999999999999999999999999988
Q ss_pred -eEEEEcccccc-cCccHHHHhccCCC------------CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 -TAAYVSQSAWI-QSGNIEENILFGSP------------MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 -~i~~v~Q~~~l-~~~ti~~Ni~~g~~------------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.+||++|++-| ...||.+|++.|.- ++++....++++.. .+ |.....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLe---rv-----gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE---RV-----GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHH---Hc-----CcHHHHHHHhccCCcch
Confidence 38999999775 57899999997742 33444444443321 11 11122235678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecCh
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT-ALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKY 659 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 659 (1343)
+|||+|||||+++|++++-|||+|+|||.+++++++.+.+. ...|.|+|+.-|++++.. .||||+-|++|+|+++|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 99999999999999999999999999999999998765443 235899999999999875 5999999999999999999
Q ss_pred HHHHh
Q 000702 660 DDLLQ 664 (1343)
Q Consensus 660 ~~l~~ 664 (1343)
+|+-+
T Consensus 233 ~el~~ 237 (258)
T COG3638 233 SELTD 237 (258)
T ss_pred hhhhH
Confidence 88643
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=331.72 Aligned_cols=172 Identities=35% Similarity=0.560 Sum_probs=159.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCC--hHHHhhcc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG--LHDLRSRL 1174 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--l~~LR~~i 1174 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred eeecCCccccCC-chhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
+|+||+|.+|.+ |+++|+... ||+|||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998743 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCE
Q 000702 1254 ILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGR 1308 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1308 (1343)
++||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=336.79 Aligned_cols=185 Identities=26% Similarity=0.344 Sum_probs=163.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCcceEEEcCeecCCCChHHH-hhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPACGRIIIDNIDISTIGLHDL-RSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl--~~~~~G~I~IdG~di~~i~l~~L-R~~ 1173 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999974 3699999999999999999999999999999999999 58999999999999998876654 556
Q ss_pred ceeecCCccccCC-chhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
++|+||+|.+|.+ |+++|+ .. ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999876 555554 00 01369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCccccc--ccCEEEEEeCCEEeeecChhHHh
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVI--DSDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~--~~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
+||+|||||++||.++...+.+.|++..+ ++|+|++||+++.+. .||||++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999987643 789999999999988 59999999999999999 66565
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=362.55 Aligned_cols=202 Identities=26% Similarity=0.383 Sum_probs=169.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 519 (1343)
.++++|++++|.. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999832 357999999999999999999999999999999999999999999999983 899
Q ss_pred Eccccccc-CccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQ-SGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~-~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
|+|++.+| +.||+|||.|+.. .+. ++.+++++.+++.+. ......+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 99999998 5799999999853 222 233444444454432 3345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+.+|+++|||||||+||+.+.+.+.+.+..... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999998888765433222 3899999999998765 5999999999999999999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=344.21 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=169.4
Q ss_pred EEEEEEEEEEcCC--CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCcceEEEcCeecCCCChHHHh
Q 000702 1097 IELIDLKVRYGEN--LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE---PACGRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~l~~LR 1171 (1343)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999765 3679999999999999999999999999999999999999 99999999999885 34678
Q ss_pred hcceeecCCccccCC-chhhhcCCC---C--CCCHH-----HHHH-HHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1172 SRLGIIPQDPNLFEG-TIRCNLDPL---E--EHSDR-----EIWE-ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~g-TIr~NLdp~---~--~~sd~-----ei~~-aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+. ......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-----------GGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhh-----------hcccccCcCHHHH
Confidence 899999999999987 999999632 1 11111 1222 3444444322 2223468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCc-ccc-cccCEEEEEeCCEEeeec
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRI-PTV-IDSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti-~~~DrIlvl~~G~ive~g 1313 (1343)
||++||||++++|++|||||||++||+.+...+.+.|++.. +++|+|+++|++ ..+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 368999999998 355 559999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=351.87 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=176.2
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 59999999999633 469999999999999999999999999999999999999999999999998752 11234699
Q ss_pred eecCCccc---cCCchhhhcCCC--------C---CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1176 IIPQDPNL---FEGTIRCNLDPL--------E---EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1176 iVpQdp~l---F~gTIr~NLdp~--------~---~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
|+||+|.+ +..++++|+... . ...++.+.++++..++.+... +.+ .+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~----~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------RQI----GELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------CCc----ccCCHHHHHH
Confidence 99999865 456788887521 0 112345677889998876543 333 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998764 37899999999998855 9999777 89999999999986
Q ss_pred h
Q 000702 1320 E 1320 (1343)
Q Consensus 1320 ~ 1320 (1343)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=316.86 Aligned_cols=213 Identities=28% Similarity=0.401 Sum_probs=185.3
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+.+-+ ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678999999987 334899999999999999999999999999999999999999999999999998854 667999999
Q ss_pred ecCCccccCC-chhhhcCCCC---CCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLE---EHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 VpQdp~lF~g-TIr~NLdp~~---~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
++-+.-++.. |.||||.+|. +.++. ++.+.-++.++.+... ..+ .+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rRv----~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RRV----GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HHH----hhhchhhHHHHHHHHHH
Confidence 9977667754 9999998764 23333 4555566666666653 344 36999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
.++|+|+|||||||+||.-|...+++.|+.... +++||+-+|-++.+. -||||+++++|+++..|+++++.+..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999987665 899999999999998 59999999999999999999998753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=337.42 Aligned_cols=190 Identities=26% Similarity=0.294 Sum_probs=161.8
Q ss_pred eEEEEEEEEEEcCC--CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCcceEEEcCeecCCCChHHH
Q 000702 1096 TIELIDLKVRYGEN--LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE---PACGRIIIDNIDISTIGLHDL 1170 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~l~~L 1170 (1343)
.+.++||+|.|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hhcceeecCCccccCC-chhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHh
Q 000702 1171 RSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249 (1343)
Q Consensus 1171 R~~i~iVpQdp~lF~g-TIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1249 (1343)
|++++|+||++.+|.+ |+++|+...... . .+.. ...||+|||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~~~----~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GNEF----VRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cccc----hhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 2222 2579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEec-cCccccc-ccCEEEEEeCCEEeeec
Q 000702 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIA-HRIPTVI-DSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1250 ~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~Ia-Hrl~ti~-~~DrIlvl~~G~ive~g 1313 (1343)
++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998654 46766655 5556664 59999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=334.68 Aligned_cols=182 Identities=27% Similarity=0.385 Sum_probs=161.2
Q ss_pred eEEEEEEEEEEcCC----CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCcceEEEcCeecCCCChHH
Q 000702 1096 TIELIDLKVRYGEN----LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI--EPACGRIIIDNIDISTIGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~l~~ 1169 (1343)
.|+++||+++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhhcceeecCCccccCC-chhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 000702 1170 LRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1170 LR~~i~iVpQdp~lF~g-TIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1248 (1343)
+|++++++||++.+|.+ |+++|+.... ... .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 9999984210 000 6999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcc-ccc-ccCEEEEEeCCEEeeec
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIP-TVI-DSDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1249 L~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~-ti~-~~DrIlvl~~G~ive~g 1313 (1343)
+++|++|||||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+. .||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 3789999999997 454 49999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=321.51 Aligned_cols=216 Identities=25% Similarity=0.435 Sum_probs=184.9
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH-Hhhc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-LRSR 1173 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~-LR~~ 1173 (1343)
+.+..+|+..+|... +|.++|||++++||.||+.||+||||||.+..+.|++.|++|+|.+||.||+.+|++. -|-.
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 458889999999754 6999999999999999999999999999999999999999999999999999999987 5778
Q ss_pred ceeecCCccccCC-chhhhcCCCCCC---------CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPLEEH---------SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~~~~---------sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
|||+||+|.+|.+ ||++||...-+. ..+++.+.|+..++...- ...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHH
Confidence 9999999999987 999999632211 112344555655554322 1235689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcc-cccccCEEEEEeCCEEeeecChhHHhhc
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIP-TVIDSDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~-ti~~~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
|||||..+|+.++||||.|++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998654 3668998999975 5666999999999999999999999987
Q ss_pred CC
Q 000702 1322 KS 1323 (1343)
Q Consensus 1322 ~~ 1323 (1343)
+.
T Consensus 230 ~~ 231 (243)
T COG1137 230 ED 231 (243)
T ss_pred hh
Confidence 53
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=340.49 Aligned_cols=199 Identities=26% Similarity=0.357 Sum_probs=170.0
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----ChHHHhhc
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI----GLHDLRSR 1173 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~l~~LR~~ 1173 (1343)
++ ||+++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 899999763 34 99999999 99999999999999999999999999999999999998643 23457889
Q ss_pred ceeecCCccccC-CchhhhcCCC-CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1174 LGIIPQDPNLFE-GTIRCNLDPL-EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1174 i~iVpQdp~lF~-gTIr~NLdp~-~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
++|+||++.+|. .|+++|+... ..+ .++++.++++..++.+.... ...+||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-----------YPAQLSGGEKQRVALARA 145 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhc-----------CcccCCHHHHHHHHHHHH
Confidence 999999999986 4999999642 111 23457778888877654432 335799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987643 7899999999999865 9999999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=343.91 Aligned_cols=199 Identities=32% Similarity=0.416 Sum_probs=164.3
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 515 (1343)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46889999984 35799999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccccCc-cHHHHhccCCC----CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 TAAYVSQSAWIQSG-NIEENILFGSP----MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~~-ti~~Ni~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++|++|++.++.. |++||+.++.. .+.+ +..++++.+++. ........+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-----------GAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHH
Confidence 27999999988775 99999988632 2222 222333333332 2234556789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
||||++.+|+++||||||++||+.+.+.+.+. +.... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999998887654 44432 38999999999998765 9999999999999999998876
Q ss_pred hc
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
..
T Consensus 226 ~~ 227 (235)
T cd03261 226 AS 227 (235)
T ss_pred CC
Confidence 43
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=329.70 Aligned_cols=177 Identities=32% Similarity=0.540 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3699999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 000702 1178 PQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257 (1343)
Q Consensus 1178 pQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlL 1257 (1343)
|| +++.+++.++..+ ...+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888766543 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1258 DEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1258 DEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 6899999999999854 9999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=346.13 Aligned_cols=211 Identities=20% Similarity=0.236 Sum_probs=178.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCcceEEEcCeecCCCChHHHhh-
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL--IEPACGRIIIDNIDISTIGLHDLRS- 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl--~~~~~G~I~IdG~di~~i~l~~LR~- 1172 (1343)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999974 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred cceeecCCccccCC-chhhhcCCC-C---------CCC----HHHHHHHHHHcCCch-HHhcccCCCCcccccCCCCCCh
Q 000702 1173 RLGIIPQDPNLFEG-TIRCNLDPL-E---------EHS----DREIWEALDKSQLGD-IVRGKDQKLETPVLENGDNWSV 1236 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~g-TIr~NLdp~-~---------~~s----d~ei~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSg 1236 (1343)
.++++||+|.+|.+ |+++|+... . +.+ .+.+.++|+.+++.+ .. +..+. ..|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~---~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-------SRNVN---EGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-------ccccc---cCCCH
Confidence 58899999999986 788887421 1 011 134567788888752 22 22221 24999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc--cCEEEEEeCCEEeeec
Q 000702 1237 GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID--SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1237 GQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~DrIlvl~~G~ive~g 1313 (1343)
|||||++||||++++|+||||||||++||.++...+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998764 47899999999999875 8999999999999999
Q ss_pred ChhHH
Q 000702 1314 TPGRL 1318 (1343)
Q Consensus 1314 ~p~eL 1318 (1343)
+|+++
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 99843
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=331.29 Aligned_cols=172 Identities=28% Similarity=0.467 Sum_probs=156.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh-HHHhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL-HDLRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l-~~LR~~i 1174 (1343)
.|+++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988864 4568899
Q ss_pred eeecCCc----cccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1175 GIIPQDP----NLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1175 ~iVpQdp----~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864211 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEE
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRV 1309 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~i 1309 (1343)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999764 47899999999999877 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=323.34 Aligned_cols=164 Identities=30% Similarity=0.399 Sum_probs=150.6
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999983 67999
Q ss_pred ecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000702 1177 IPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256 (1343)
Q Consensus 1177 VpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILl 1256 (1343)
+||+|.++++|+++|+... ....||+|||||++||||++++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999642 125799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccccCEEEEEeCCE
Q 000702 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGR 1308 (1343)
Q Consensus 1257 LDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1308 (1343)
|||||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999976 589999999998888899999999763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=360.46 Aligned_cols=192 Identities=28% Similarity=0.414 Sum_probs=161.9
Q ss_pred CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------------eEEEEcccccccC
Q 000702 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------------TAAYVSQSAWIQS 528 (1343)
Q Consensus 466 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~~v~Q~~~l~~ 528 (1343)
++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 46799999999999999999999999999999999999999999999987 3899999999986
Q ss_pred -ccHHHHhccCCCC---CH-HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 000702 529 -GNIEENILFGSPM---DK-AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603 (1343)
Q Consensus 529 -~ti~~Ni~~g~~~---~~-~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep 603 (1343)
.||+|||.|+.++ +. +..+++.+.+... |.....+....+|||||||||+|||||+.+|+++|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v--------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV--------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5999999987542 22 2333333333221 223345567789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCcc-ccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 604 FSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 604 ~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||+||+.+.+++.+.+..... .++|+|+|||+++.+ ..||+|++|++|++++.|++++++.+
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999998876654433 489999999999976 45999999999999999999998765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=309.76 Aligned_cols=193 Identities=26% Similarity=0.429 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 515 (1343)
|+|+||+..|+. ++++|+||||+|++||++-++||||||||||+|+|.|+..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 789999999864 36799999999999999999999999999999999999999999999988
Q ss_pred eEEEEccccc-ccCccHHHHhccCCCC---CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 TAAYVSQSAW-IQSGNIEENILFGSPM---DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 ~i~~v~Q~~~-l~~~ti~~Ni~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
+||+|+||.- +.+-||.||++|.... .+ ++..++++..+|.+-...+| ..|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 4899999965 5688999999997542 22 34455666777776666666 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
|||+..+|++||-||||-+|||..+..|++.+-.-...|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999987544444569999999999999876 5789999999998653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=338.96 Aligned_cols=193 Identities=26% Similarity=0.371 Sum_probs=165.8
Q ss_pred EEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh----HHHhhcc
Q 000702 1099 LIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL----HDLRSRL 1174 (1343)
Q Consensus 1099 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l----~~LR~~i 1174 (1343)
++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999974 369999999999999999999999999999999999999999999999999875542 2467789
Q ss_pred eeecCCccccC-CchhhhcCCC---C----CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFE-GTIRCNLDPL---E----EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~-gTIr~NLdp~---~----~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+++||+|.+|. .|+++|+... . ...++++.++++..++.+...+ . ..+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-------K----IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-------C----hhhCCHHHHHHHHHHH
Confidence 99999999997 6999999641 1 1124557788888888654332 2 2579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEE
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVL 1304 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl 1304 (1343)
||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 378999999999988789999985
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=333.45 Aligned_cols=181 Identities=22% Similarity=0.316 Sum_probs=160.2
Q ss_pred eEEEEEEEEEEcCC--CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCcceEEEcCeecCCCChHHHh
Q 000702 1096 TIELIDLKVRYGEN--LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI--EPACGRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~l~~LR 1171 (1343)
.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999752 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred hcceeecCCccccCC-chhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1172 SRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1172 ~~i~iVpQdp~lF~g-TIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
++++++||+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998621 0000 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccc-c-cccCEEEEEeC-CEEeeec
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPT-V-IDSDLVLVLSD-GRVAEFD 1313 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t-i-~~~DrIlvl~~-G~ive~g 1313 (1343)
+|++|+|||||+++|.++...+.+.|++.. +++|+|+|||+++. + ..||||++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999764 37899999999984 4 56999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=360.60 Aligned_cols=226 Identities=26% Similarity=0.387 Sum_probs=191.1
Q ss_pred eEEEEEEEEEEcCCCC--cccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC----cceEEEcCeecCCCChHH
Q 000702 1096 TIELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA----CGRIIIDNIDISTIGLHD 1169 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~--~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~----~G~I~IdG~di~~i~l~~ 1169 (1343)
-++++|++..|..... .+++||||+|.+||.+||||+|||||||+.++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6999999999975433 5999999999999999999999999999999999999987 899999999999998776
Q ss_pred Hh----hcceeecCCcc-ccCC--chhhhcC----CCC----CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCC
Q 000702 1170 LR----SRLGIIPQDPN-LFEG--TIRCNLD----PLE----EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234 (1343)
Q Consensus 1170 LR----~~i~iVpQdp~-lF~g--TIr~NLd----p~~----~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1234 (1343)
+| ++|++|||||. .++. ||.+-+. ... +...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 47999999995 4543 5554442 111 1123457888999998765443 1123579
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1235 SgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
|||||||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .+.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999866 57899999999999987 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHH
Q 000702 1312 FDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~~f~~l~ 1330 (1343)
.|+++++++++.--|.+..
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999998876665444
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=303.36 Aligned_cols=197 Identities=28% Similarity=0.428 Sum_probs=175.2
Q ss_pred EEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCcccc
Q 000702 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF 1184 (1343)
Q Consensus 1105 ~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF 1184 (1343)
.|.....++|+|+||++++||.++|.||||||||||++.+.-+..|++|+++..|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46556667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhcC-CC---C-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeC
Q 000702 1185 EGTIRCNLD-PL---E-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259 (1343)
Q Consensus 1185 ~gTIr~NLd-p~---~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDE 1259 (1343)
.+||.+||- |. + ..+.+.-.+-|+++++.+.+. +.++ .+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L------~k~i----t~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL------TKNI----TELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh------cchh----hhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999996 43 2 233344567788888877653 2333 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCccc-ccccCEEEEEeCCEEee
Q 000702 1260 ATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPT-VIDSDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1260 aTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~t-i~~~DrIlvl~~G~ive 1311 (1343)
+||+||+.+.+.|.+.|..++ ++..++.|||+-+. +..+||++-+..|++-|
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999999999999988 46799999999987 88899999999998644
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=350.43 Aligned_cols=204 Identities=27% Similarity=0.466 Sum_probs=168.9
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 451 AIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
.++++|+++.|+... .+++|+||||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999985322 24799999999999999999999999999999999999999999999877
Q ss_pred --eEEEEcccc--cccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 --TAAYVSQSA--WIQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 --~i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++||+|+| .+++.|++|||.|+.. .+++ +.+++++.+++. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 269999998 5778999999998642 2322 233344444442 1123456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
++|||||+.+|+++||||||++||+.+...+++. +..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999998887654 54433 3899999999999875 599999999999999999998
Q ss_pred HHh
Q 000702 662 LLQ 664 (1343)
Q Consensus 662 l~~ 664 (1343)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=357.66 Aligned_cols=200 Identities=26% Similarity=0.393 Sum_probs=168.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~ 519 (1343)
.++++|+++.|. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999984 35799999999999999999999999999999999999999999999988 3799
Q ss_pred EcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
|+|++.+|. .||+|||.|+.. .++. +.+++++..++. ........+|||||||||+|||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-----------~~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-----------GFEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999885 699999999843 2222 223333333332 223456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+.+|+++|||||||+||+.+.+.+.+. ++.+. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999998887664 44433 2899999999999864 5999999999999999999998754
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=350.32 Aligned_cols=202 Identities=27% Similarity=0.464 Sum_probs=168.2
Q ss_pred EEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000702 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 516 (1343)
++++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996322 136999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEcccc--cccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 517 ----AAYVSQSA--WIQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 517 ----i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
++||+|+| .++..||.||+.|+.. .+.+ ++.++++..++..+ .......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 69999998 7888999999998743 2222 23334444444221 234567899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
|++|||||+.+|+++||||||++||+.+.+.+.+. +..+ .+|+|+|++||+++.+. .||+|++|++|+++++|++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998877654 4443 35899999999999875 599999999999999999999
Q ss_pred HHh
Q 000702 662 LLQ 664 (1343)
Q Consensus 662 l~~ 664 (1343)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 864
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.21 Aligned_cols=198 Identities=46% Similarity=0.842 Sum_probs=176.9
Q ss_pred EEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------------
Q 000702 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----------------- 515 (1343)
Q Consensus 453 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 515 (1343)
.+.|+.|.|++ ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 46788999864 35799999999999999999999999999999999999999999999865
Q ss_pred eEEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCC
Q 000702 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~ 595 (1343)
.++|++|+|.+++.|++||+.++.+.+.++.+++++++++.+.++.+|.|+++.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 37999999999999999999998766666677888899988888889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHhc-CCcEEEEEecCCCccccCCEEEEEeCCe
Q 000702 596 DIYLLDDPFSAVDAHTGSELFKE-YIMTAL-ANKTVIFVTHQVEFLPAADFILVLKEGR 652 (1343)
Q Consensus 596 ~illLDep~s~lD~~~~~~i~~~-~~~~~~-~~~t~i~vtH~~~~l~~~d~i~~l~~G~ 652 (1343)
+++||||||++||+.+.+.+.+. +++... +|+|+|++||+.+.+..||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998877663 444332 4799999999999888899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=349.90 Aligned_cols=202 Identities=27% Similarity=0.437 Sum_probs=168.5
Q ss_pred EEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000702 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 516 (1343)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999995322 246999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEcccc--cccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 517 ----AAYVSQSA--WIQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 517 ----i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
++||+|+| .+++.||+|||.|+.. .+.+ +.+++++.++|..++ ...+..+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 79999998 5888999999998732 2222 334445555443221 23566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|++|||||+.+|+++||||||++||+.+...+++. ++.+ . .|.|+|++||+++.+. .||+|++|++|+++++|+.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998887654 4443 3 3899999999999875 59999999999999999999
Q ss_pred HHHh
Q 000702 661 DLLQ 664 (1343)
Q Consensus 661 ~l~~ 664 (1343)
++.+
T Consensus 232 ~~~~ 235 (290)
T PRK13634 232 EIFA 235 (290)
T ss_pred HHhc
Confidence 8864
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=342.77 Aligned_cols=205 Identities=21% Similarity=0.312 Sum_probs=175.9
Q ss_pred EEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceee
Q 000702 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGII 1177 (1343)
Q Consensus 1098 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iV 1177 (1343)
+++||++. .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778875 27999999999999999999999999999999999986 599999999999988888888899999
Q ss_pred cCCcc-ccCCchhhhcCCCCC--CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1178 PQDPN-LFEGTIRCNLDPLEE--HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1178 pQdp~-lF~gTIr~NLdp~~~--~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
||+|. .+..|+++|+..... .+ .+++.++++..++.+...+ ....||+|||||++|||||++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhc
Confidence 99985 456799999975321 11 2356778888887654332 235799999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1251 -------QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1251 -------~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998764 47899999999997755 99999999999999999999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=339.96 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=171.1
Q ss_pred ccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC----CcceEEEcCeecCCCChHHHhhcceeecCCcc-ccC--
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP----ACGRIIIDNIDISTIGLHDLRSRLGIIPQDPN-LFE-- 1185 (1343)
Q Consensus 1113 vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~----~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~-lF~-- 1185 (1343)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 343
Q ss_pred CchhhhcCC----CCC---CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 000702 1186 GTIRCNLDP----LEE---HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258 (1343)
Q Consensus 1186 gTIr~NLdp----~~~---~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLD 1258 (1343)
-|+.+|+.. ... ..++++.++++..++.+. +........+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488887631 111 123457888998888631 01122233579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCcHHHH
Q 000702 1259 EATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328 (1343)
Q Consensus 1259 EaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~~f~~ 1328 (1343)
|||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||||++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998653 6899999999999865 9999999999999999999998765555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.33 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=169.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++++|+....+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999998543235699999999999999999999999999999999999999999999988 37
Q ss_pred EEEccccc--ccCccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSAW--IQSGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+|. ++..||+|||.|+.. .++ ++..++++..++... ......+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF-----------KEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999984 567899999998742 222 234445555555432 3345578999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||++.+|+++||||||++||+.+.+.+++. +..+. .|+|+|++||+++.+..||+|++|++|+++..|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999998877654 44433 38999999999998877999999999999999999887653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=326.32 Aligned_cols=214 Identities=26% Similarity=0.419 Sum_probs=187.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i 1174 (1343)
-++.+|++.+|+.- .+++||||++++||++|++|||||||||++|++.|+|+|++|+|.++|.||..++.+.. |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 36789999999753 59999999999999999999999999999999999999999999999999999998884 6678
Q ss_pred eeecCCccccCC-chhhhcCCCCC-------------C--C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCC
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE-------------H--S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~-------------~--s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1234 (1343)
+--+|.+-+|++ |+-||+..... + . .++-.+.|+.++|.+.... ...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-----------~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-----------PAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-----------hhhcC
Confidence 888999999987 99999853210 1 1 2345566777887665432 23589
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1235 SgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
|+||+.||-|||||..+|++|+||||.|++.++-...+.+.|++..+ +.|+++|-||++.+++ ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999998774 4899999999999988 99999999999999
Q ss_pred ecChhHHhhcC
Q 000702 1312 FDTPGRLLEDK 1322 (1343)
Q Consensus 1312 ~g~p~eLl~~~ 1322 (1343)
.|+|+|..+++
T Consensus 231 eG~P~eV~~dp 241 (250)
T COG0411 231 EGTPEEVRNNP 241 (250)
T ss_pred cCCHHHHhcCH
Confidence 99999999875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=338.62 Aligned_cols=199 Identities=33% Similarity=0.464 Sum_probs=165.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~ 519 (1343)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 478999999984 25799999999999999999999999999999999999999999999987 3799
Q ss_pred EcccccccC-ccHHHHhccCCCC-------CHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 520 VSQSAWIQS-GNIEENILFGSPM-------DKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 520 v~Q~~~l~~-~ti~~Ni~~g~~~-------~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
++|+|.++. .|++||+.++... +.. +.++.++.+++ .........+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----------DWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHH
Confidence 999998875 6999999986421 111 12223333333 223445667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|||++.+|+++||||||++||+++.+.+.+ ++.... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999887765 444432 3789999999999875 499999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=379.22 Aligned_cols=216 Identities=24% Similarity=0.324 Sum_probs=146.7
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHh------cccC----C-----------Ccce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALF------RLIE----P-----------ACGR 1154 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~------rl~~----~-----------~~G~ 1154 (1343)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588999873 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEEcCeecCCCC----------hHHHhhcceeecCC------ccccCC--------------chhhhcCCC---------
Q 000702 1155 IIIDNIDISTIG----------LHDLRSRLGIIPQD------PNLFEG--------------TIRCNLDPL--------- 1195 (1343)
Q Consensus 1155 I~IdG~di~~i~----------l~~LR~~i~iVpQd------p~lF~g--------------TIr~NLdp~--------- 1195 (1343)
|.||-.+|..-+ .+.+|.-.+=.|+- +-.|+= .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 666666654322 13466666655542 233331 111111100
Q ss_pred ---CCCCHH------------H-----HHHHHHHc----CCchHHhcc-cCCCCc-ccccCCCCCChhHHHHHHHHHHHh
Q 000702 1196 ---EEHSDR------------E-----IWEALDKS----QLGDIVRGK-DQKLET-PVLENGDNWSVGQRQLVSLGRALL 1249 (1343)
Q Consensus 1196 ---~~~sd~------------e-----i~~aL~~~----~L~~~i~~l-p~gLdt-~v~e~G~nLSgGQrQrl~LARALL 1249 (1343)
..+.++ | +.++++.. .+.+....+ .-||+. .++.....|||||+||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 011111 1 11221111 000100000 124543 356666889999999999999999
Q ss_pred c---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEE------eCCEEeeecChhHH
Q 000702 1250 K---QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVL------SDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1250 ~---~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl------~~G~ive~g~p~eL 1318 (1343)
+ +|+++||||||++||+.+...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998764 478999999999999899999999 79999999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=338.88 Aligned_cols=195 Identities=29% Similarity=0.440 Sum_probs=161.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCc-----cCCCcEEEECC-----------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI-----PKISGEVRLCG----------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-----~~~~G~i~~~g----------- 515 (1343)
++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.+ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 46899999884 357999999999999999999999999999999999999 99999999877
Q ss_pred ----eEEEEcccccccCccHHHHhccCCCC----C----HHHHHHHHHHhhhhhhHhhccCCCccccCCC--CCCCChHH
Q 000702 516 ----TAAYVSQSAWIQSGNIEENILFGSPM----D----KAKYKKVIHACSLKKDLELFSHGDQTIIGDR--GINLSGGQ 581 (1343)
Q Consensus 516 ----~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~--g~~LSgGQ 581 (1343)
.++|++|++.+++.|++||+.++... . +++..++++.+++.+.+ ..+ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcccCCHHH
Confidence 27999999988889999999876321 1 12233344444443222 222 57899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||++||||++.+|+++||||||++||+.+.+.+++. +....+.+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999998887654 544433489999999999876 49999999999999998875
Q ss_pred H
Q 000702 661 D 661 (1343)
Q Consensus 661 ~ 661 (1343)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=356.13 Aligned_cols=201 Identities=31% Similarity=0.385 Sum_probs=169.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~ 519 (1343)
.++++|++++|. +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999984 35689999999999999999999999999999999999999999999988 3899
Q ss_pred EcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
|+|++.+|. .||+|||.|+.. .+. ++.+++++..+| .........+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L-----------~~~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-----------PGSERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------CchhhCChhhCCHHHHHHHHHHHHH
Confidence 999999884 799999999743 222 223333333333 2334467789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+.+|+++|||||||+||+.+.+++.+.+..... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999998887665433222 3899999999999865 5999999999999999999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=334.70 Aligned_cols=203 Identities=28% Similarity=0.435 Sum_probs=174.4
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------e
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------T 516 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 516 (1343)
+.++++|++++|+.....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 469999999998643234799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEcccccccCccHHHHhccCCCC-CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCC
Q 000702 517 AAYVSQSAWIQSGNIEENILFGSPM-DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595 (1343)
Q Consensus 517 i~~v~Q~~~l~~~ti~~Ni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~ 595 (1343)
++|++|++.++..|++||+.++... ....+.+..+...+.+.++.++.|.++.+++++.+|||||||||+||||++.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999987542 222233333444566778888888888899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeE
Q 000702 596 DIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRI 653 (1343)
Q Consensus 596 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i 653 (1343)
+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+..||+|++|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999887765 45555567899999999999878999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=348.26 Aligned_cols=205 Identities=26% Similarity=0.406 Sum_probs=167.3
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 451 AIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
.|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999985321 13699999999999999999999999999999999999999999998853
Q ss_pred ------------------------eEEEEcccc--cccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhc
Q 000702 516 ------------------------TAAYVSQSA--WIQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELF 562 (1343)
Q Consensus 516 ------------------------~i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l 562 (1343)
.++||+|+| .++..||+|||.|+.. .+++ +..++++.++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 269999986 5788899999998742 2222 2333344444321
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-c
Q 000702 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-A 641 (1343)
Q Consensus 563 ~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~ 641 (1343)
...+....+||||||||++|||||+.+|+++||||||++||+...+.+.+.+.....+|+|+|+|||+++.+. .
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 1234667899999999999999999999999999999999999987776543322235899999999999765 5
Q ss_pred CCEEEEEeCCeEEEecChHHHHhc
Q 000702 642 ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 642 ~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||+|++|++|++++.|+.+++...
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999988653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=355.88 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=168.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 519 (1343)
.++++|++++|. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 14 ~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred eEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999984 357999999999999999999999999999999999999999999999883 899
Q ss_pred Eccccccc-CccHHHHhccCCCC---CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQ-SGNIEENILFGSPM---DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~-~~ti~~Ni~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
|+|++.+| ..||+|||.|+... +. ++.+++++.+++.+. ......+|||||||||+|||||
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 99999888 55999999998532 22 223344444444333 3345578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+.+|+++|||||||+||+...+.+.+. ++.+. .|.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999998877654 44433 3899999999998864 5999999999999999999998754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=347.34 Aligned_cols=202 Identities=23% Similarity=0.454 Sum_probs=167.4
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 451 AIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999995322 24799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEcccc--cccCccHHHHhccCCC---CCHHHH----HHHHHHhhhhhhHhhccCCCcc-ccCCCCCCCChHH
Q 000702 516 ----TAAYVSQSA--WIQSGNIEENILFGSP---MDKAKY----KKVIHACSLKKDLELFSHGDQT-IIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ----~i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~~~----~~~~~~~~l~~~~~~l~~g~~t-~ig~~g~~LSgGQ 581 (1343)
.++||+|+| .++..|++|||.|+.. .+.++. .++++.+ |+.+ .....+.+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDL-----------GFSRDVMSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCCcccCCHHH
Confidence 269999997 5788899999998742 233222 2222222 3332 2346778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecC
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~ 658 (1343)
|||++|||||+.+|+++||||||++||+.+...+.+. ++.+. .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999998887654 44432 4899999999999875 599999999999999999
Q ss_pred hHHHHh
Q 000702 659 YDDLLQ 664 (1343)
Q Consensus 659 ~~~l~~ 664 (1343)
++++.+
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988765
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=339.08 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=169.5
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCcceEEEcCeecCCCChHHHh-hc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI--EPACGRIIIDNIDISTIGLHDLR-SR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~l~~LR-~~ 1173 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999974 35999999999999999999999999999999999994 69999999999999888776654 57
Q ss_pred ceeecCCccccCC-chhhh-------cCCCCC---CC----HHHHHHHHHHcCCchHHhcccCCC-CcccccCCCCCChh
Q 000702 1174 LGIIPQDPNLFEG-TIRCN-------LDPLEE---HS----DREIWEALDKSQLGDIVRGKDQKL-ETPVLENGDNWSVG 1237 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~N-------Ldp~~~---~s----d~ei~~aL~~~~L~~~i~~lp~gL-dt~v~e~G~nLSgG 1237 (1343)
++++||+|.++.. |..++ +..... .. .+.+.+.++..++ |.++ +..+ ..+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~---~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV---NVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC---CCCCCHH
Confidence 9999999987754 43333 221111 01 1123334444444 2222 2222 1369999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc--cCEEEEEeCCEEeeecC
Q 000702 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID--SDLVLVLSDGRVAEFDT 1314 (1343)
Q Consensus 1238 QrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~--~DrIlvl~~G~ive~g~ 1314 (1343)
||||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999987644 6899999999999887 89999999999999999
Q ss_pred hhHH
Q 000702 1315 PGRL 1318 (1343)
Q Consensus 1315 p~eL 1318 (1343)
+++.
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8854
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=328.61 Aligned_cols=194 Identities=24% Similarity=0.350 Sum_probs=168.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999975 35999999999999999999999999999999999999999999999999987643 467889999
Q ss_pred ecCCcccc-CCchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCE
Q 000702 1177 IPQDPNLF-EGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1177 VpQdp~lF-~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~I 1254 (1343)
+||++.++ ..|+++|+.... ...++++.++++..++.++.. +.+ .+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-------RPV----AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-------Cch----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 579999996542 345677889999999875532 222 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccc-cccCEEEEE
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTV-IDSDLVLVL 1304 (1343)
Q Consensus 1255 LlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti-~~~DrIlvl 1304 (1343)
|||||||++||+++.+.+.+.|++.. +++|+|+|||+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998754 378999999987765 458999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=391.45 Aligned_cols=209 Identities=26% Similarity=0.282 Sum_probs=148.1
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHH---------HHhcccCCCc----c----eEEEc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQ---------ALFRLIEPAC----G----RIIID 1158 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~---------~L~rl~~~~~----G----~I~Id 1158 (1343)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888862 2799999999999999999999999999999 4445332211 1 24566
Q ss_pred CeecCCCCh----------HHHh---------hcce-----eecCC------------------c---------------
Q 000702 1159 NIDISTIGL----------HDLR---------SRLG-----IIPQD------------------P--------------- 1181 (1343)
Q Consensus 1159 G~di~~i~l----------~~LR---------~~i~-----iVpQd------------------p--------------- 1181 (1343)
-.+|..-+. +++| ++.+ +.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 555543211 1445 1122 22332 1
Q ss_pred -----cccCC-chhhhcCCCCC-C-----CHHHHH---HHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1182 -----NLFEG-TIRCNLDPLEE-H-----SDREIW---EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1182 -----~lF~g-TIr~NLdp~~~-~-----sd~ei~---~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
+.+.+ ||.|||+.... + +.+++. ++|+.++|.+. ..+....+||||||||++|||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l----------~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYL----------PLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcch----------hhcCccccCCHHHHHHHHHHH
Confidence 12333 67777754311 0 112222 23444444221 134445689999999999999
Q ss_pred HHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEEEe------CCEEeeecChh
Q 000702 1247 ALL---KQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVLS------DGRVAEFDTPG 1316 (1343)
Q Consensus 1247 ALL---~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~------~G~ive~g~p~ 1316 (1343)
||+ ++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|+++..|+|+
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 998 5999999999999999999999999998764 4789999999999998899999996 79999999999
Q ss_pred HHhhc
Q 000702 1317 RLLED 1321 (1343)
Q Consensus 1317 eLl~~ 1321 (1343)
++...
T Consensus 903 el~~~ 907 (1809)
T PRK00635 903 ELIHL 907 (1809)
T ss_pred HHHhc
Confidence 99863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=338.46 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=165.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------eE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------TA 517 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 517 (1343)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 36789999984 25699999999999999999999999999999999999999999999877 27
Q ss_pred EEEcccccccCc-cHHHHhccCCCCC-------------HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 518 AYVSQSAWIQSG-NIEENILFGSPMD-------------KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 518 ~~v~Q~~~l~~~-ti~~Ni~~g~~~~-------------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
+|++|++.++.. |++||+.++.... .....+ ...+.++.+ |.....+....+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999988775 9999998764211 111111 111222222 3344456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 662 (1343)
|++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999888776443322368999999999998865 999999999999999999887
Q ss_pred Hh
Q 000702 663 LQ 664 (1343)
Q Consensus 663 ~~ 664 (1343)
..
T Consensus 231 ~~ 232 (236)
T cd03219 231 RN 232 (236)
T ss_pred cc
Confidence 54
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=354.74 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=169.3
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCC--cEEEECC-----------e
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS--GEVRLCG-----------T 516 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~--G~i~~~g-----------~ 516 (1343)
+.++++|++++|. +.++|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 4689999999984 2579999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
++||+|++.+|. .||+|||.|+.. .+. ++.+++++..+|.+ .......+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-----------AAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-----------hhhCChhhCCHHHHHHHHHH
Confidence 799999998885 599999998743 222 23334444444432 23456678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|||..+|+++|||||||+||+...+++.+.+.....+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999988886654332333 789999999999865 5999999999999999999998764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=353.11 Aligned_cols=200 Identities=36% Similarity=0.487 Sum_probs=167.7
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~ 519 (1343)
.++++|++++|. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 478999999984 25799999999999999999999999999999999999999999999987 3899
Q ss_pred EcccccccC-ccHHHHhccCCCC-------CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 520 VSQSAWIQS-GNIEENILFGSPM-------DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 520 v~Q~~~l~~-~ti~~Ni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
|+|++.++. .|++|||.|+... +. ++.+++++..++. .....+..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-----------HLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHHH
Confidence 999998886 6999999997431 21 1223333333332 22345667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-A-NKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~-~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
||||+.+|+++|||||||+||+.+.+.+.+. ++.+. + |+|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999998887654 44433 3 789999999999865 499999999999999999999875
Q ss_pred c
Q 000702 665 A 665 (1343)
Q Consensus 665 ~ 665 (1343)
.
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 4
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=344.09 Aligned_cols=198 Identities=30% Similarity=0.462 Sum_probs=166.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|+++.|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999842 35699999999999999999999999999999999999999999999987 37
Q ss_pred EEEcccc--cccCccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSA--WIQSGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+| .++..|++||+.|+.. .+. +++.++++.+++.+.. ......||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-----------DKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCChhhCCHHHHHHHHHH
Confidence 9999998 5788999999998742 222 2344445555553322 334568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHH
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 662 (1343)
|||+.+|+++||||||++||+.+...+.+. +..+ .+|+|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998887654 4443 35899999999999885 5999999999999999998654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.51 Aligned_cols=190 Identities=25% Similarity=0.368 Sum_probs=163.6
Q ss_pred cccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeecCCccccC-Cchhhhc
Q 000702 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFE-GTIRCNL 1192 (1343)
Q Consensus 1114 L~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVpQdp~lF~-gTIr~NL 1192 (1343)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000702 1193 DPL-----EEHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263 (1343)
Q Consensus 1193 dp~-----~~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~ 1263 (1343)
... ...++ +.+.++++..++.+.... . ...||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-------R----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-------C----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 632 22232 236677888887654432 2 247999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1264 VDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1264 lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998764 37899999999998865 9999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=325.26 Aligned_cols=220 Identities=27% Similarity=0.389 Sum_probs=192.9
Q ss_pred eEEEEEEEEEEcCCC----------------------CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 000702 1096 TIELIDLKVRYGENL----------------------PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~----------------------~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G 1153 (1343)
.|+++||+.-|+.+. ..-++|+||+|+.||+.-|.|-||||||||+++|.|++||++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588899988886431 1247899999999999999999999999999999999999999
Q ss_pred eEEEcCeecCCCChHHHh----hcceeecCCccccCC-chhhhcCCCCC---CC----HHHHHHHHHHcCCchHHhcccC
Q 000702 1154 RIIIDNIDISTIGLHDLR----SRLGIIPQDPNLFEG-TIRCNLDPLEE---HS----DREIWEALDKSQLGDIVRGKDQ 1221 (1343)
Q Consensus 1154 ~I~IdG~di~~i~l~~LR----~~i~iVpQdp~lF~g-TIr~NLdp~~~---~s----d~ei~~aL~~~~L~~~i~~lp~ 1221 (1343)
+|++||.||..++..+|| ++++.|+|.--||.- ||-+|..+.-+ .+ .+...++|+.+||.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988764 579999999999965 99999976532 22 2346789999999999888775
Q ss_pred CCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCccccc-cc
Q 000702 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVI-DS 1298 (1343)
Q Consensus 1222 gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~ 1298 (1343)
.||||++||+.|||||..+|+||++|||.|+||+--...+|+-|.+.-+ ++|+++|||+|+... --
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 5899999999999999999999999999999999999999998876432 689999999998865 49
Q ss_pred CEEEEEeCCEEeeecChhHHhhcCCcHH
Q 000702 1299 DLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1299 DrIlvl~~G~ive~g~p~eLl~~~~~~f 1326 (1343)
|||..|++|+|+..|||+|++.++...|
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 9999999999999999999999886544
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=326.63 Aligned_cols=189 Identities=26% Similarity=0.434 Sum_probs=162.7
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------e
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------T 516 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 516 (1343)
..++++|++++|.. ..+++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAP-DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCC-CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 36899999999853 234799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000702 517 AAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 517 i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ 596 (1343)
++|++|+|.++++|++||+.+...+++++ +.+++. ++++...|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~---~~~~l~---------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEE---IYGALR---------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHH---HHHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 89999999999999999998765444332 222221 346788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 597 illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 658 (1343)
++||||||++||+.+.+.+.+ .++...+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999877765 4555556899999999999887799999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=332.75 Aligned_cols=191 Identities=36% Similarity=0.490 Sum_probs=157.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~v 520 (1343)
++++|+++.|. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 46789999984 25799999999999999999999999999999999999999999999987 37999
Q ss_pred cccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 521 SQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 521 ~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
+|++.++. .|++||+.++.. .+.. +.+++++.+++. ........+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-----------GLLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 99988774 799999987632 1221 233334444333 2334556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
.+|+++||||||++||+.+.+.+++. +..+ . .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999998877654 4443 2 38999999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=355.81 Aligned_cols=200 Identities=30% Similarity=0.412 Sum_probs=168.0
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~ 519 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 488999999984 35799999999999999999999999999999999999999999999987 3899
Q ss_pred EcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
++|++.++. .||+|||.|+.. .+. ++.+++++.+++.+ .......+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----------~~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 999998885 699999998743 222 23344444444432 23455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+.+|+++|||||||+||+.+.+.+.+. ++.+ . .|+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999998887664 4443 2 3899999999998875 5999999999999999999998653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=334.76 Aligned_cols=201 Identities=27% Similarity=0.448 Sum_probs=168.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++++|. ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 488999999874 35799999999999999999999999999999999999999999999987 27
Q ss_pred EEEcccccccCccHHHHhccCCCC---CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 518 AYVSQSAWIQSGNIEENILFGSPM---DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 518 ~~v~Q~~~l~~~ti~~Ni~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
+|++|++.++..|++||+.++... ..++..++++.+++..+ .......+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999986432 12334445555544321 12356778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|+++||||||++||+.+.+.+.+ ++.... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999998777765 444432 38999999999998765 999999999999999999988653
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=338.11 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=170.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc---CCCcEEEECC------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP---KISGEVRLCG------------ 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g------------ 515 (1343)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999984 3579999999999999999999999999999999999984 6899999987
Q ss_pred -eEEEEcccccccCccHHHHhccCCCC---------CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 -TAAYVSQSAWIQSGNIEENILFGSPM---------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 -~i~~v~Q~~~l~~~ti~~Ni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.++|++|++.+++.|++||+.++... .+++..++++.+++...+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 37999999999999999999876321 11233455555555433321 24567789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
+||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999777755 5555556899999999999876 599999999999999999988764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=337.20 Aligned_cols=197 Identities=31% Similarity=0.443 Sum_probs=163.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 516 (1343)
++++|++++|. .++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYP--NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecC--CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 67899999884 1357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEcccccccC-ccHHHHhccCCCC------------CH---HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCCh
Q 000702 517 -AAYVSQSAWIQS-GNIEENILFGSPM------------DK---AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSG 579 (1343)
Q Consensus 517 -i~~v~Q~~~l~~-~ti~~Ni~~g~~~------------~~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSg 579 (1343)
++|++|++.++. .|++||+.++... .+ ++..++++.+++ .......+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-----------ADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 799999998775 6999999876321 11 122233333333 2234456789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEe
Q 000702 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQA 656 (1343)
Q Consensus 580 GQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~ 656 (1343)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +... . .|+|+|++||+++.+. .||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 999999999999999999999999999999998777654 4443 2 3799999999999885 5999999999999999
Q ss_pred cChHHH
Q 000702 657 GKYDDL 662 (1343)
Q Consensus 657 g~~~~l 662 (1343)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.05 Aligned_cols=187 Identities=30% Similarity=0.477 Sum_probs=157.1
Q ss_pred EEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----------eEEEEccc
Q 000702 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----------TAAYVSQS 523 (1343)
Q Consensus 454 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~~v~Q~ 523 (1343)
++|++++|.. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 5788998742 15799999999999999999999999999999999999999999999987 37999999
Q ss_pred c--cccCccHHHHhccCCCC---CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000702 524 A--WIQSGNIEENILFGSPM---DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIY 598 (1343)
Q Consensus 524 ~--~l~~~ti~~Ni~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~il 598 (1343)
| .++..|++||+.++.+. ++++..++++.+++.+.. .....+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK-----------ERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhc-----------CCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 46788999999886432 234555666666654332 3445689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEE
Q 000702 599 LLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRII 654 (1343)
Q Consensus 599 lLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~ 654 (1343)
||||||++||+.+.+.+.+ .+... .+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999887765 45443 468999999999998864 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=373.46 Aligned_cols=212 Identities=28% Similarity=0.400 Sum_probs=182.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CcceEEEcCeecCCCChHH-Hhh
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP--ACGRIIIDNIDISTIGLHD-LRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~--~~G~I~IdG~di~~i~l~~-LR~ 1172 (1343)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4999999999964 3699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred cceeecCCccccCC-chhhhcCCCCC------CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1173 RLGIIPQDPNLFEG-TIRCNLDPLEE------HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1173 ~i~iVpQdp~lF~g-TIr~NLdp~~~------~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
+++||||+|.+|.. |+++|+..... .+ .+++.++++..++.+.. +..+ .+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-------ATPV----GNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-------ccch----hhCCHHHHHH
Confidence 89999999998875 99999974311 12 13467778887774332 3333 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
++|||||+.+|+||||||||++||+++...+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998763 46899999999999876 9999999999999999998875
Q ss_pred h
Q 000702 1320 E 1320 (1343)
Q Consensus 1320 ~ 1320 (1343)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=371.20 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=185.3
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHh-hcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR-SRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR-~~i 1174 (1343)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999887776654 469
Q ss_pred eeecCCccccCC-chhhhcCCCCC---CCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLEE---HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~~---~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
+|+||++.+|.+ |+++|+..... ..++++.++++..++.+.. +..+ .+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-------DSSA----GSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-------cCCh----hhCCHHHHHHHHHHHHHHc
Confidence 999999998876 99999974321 1234577788888875432 3333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
+|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998763 37899999999999865 99999999999999999998864
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=333.60 Aligned_cols=196 Identities=34% Similarity=0.481 Sum_probs=160.5
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------eEEEEcc
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------TAAYVSQ 522 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~~v~Q 522 (1343)
++++|+++.|.... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46889999885311 15799999999999999999999999999999999999999999999987 4899999
Q ss_pred cccccC-ccHHHHhccCCC---CC----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 523 SAWIQS-GNIEENILFGSP---MD----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 523 ~~~l~~-~ti~~Ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
++.++. .|++||+.++.. .+ .++.++.++.+++.+ .......+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 799999987532 11 123334444444432 23345578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEe--CCeEEEecCh
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLK--EGRIIQAGKY 659 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 659 (1343)
|+++||||||++||+.+.+.+++. +... . .++|+|++||+++.+. .||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999998888764 4443 2 4899999999999875 599999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=333.34 Aligned_cols=197 Identities=22% Similarity=0.346 Sum_probs=162.0
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------eEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TAAY 519 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~~ 519 (1343)
++++|++++|. ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 46899999884 35799999999999999999999999999999999999999999999987 3799
Q ss_pred EcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
++|++.++. .|++||+.++.. .+. ++.+++++.+++.+. ......+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999998765 599999987421 111 233444454444322 2344568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 662 (1343)
+.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999988776543332333 7899999999998865 999999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.82 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=160.5
Q ss_pred CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcceeec-CCcccc-CCch
Q 000702 1111 PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIP-QDPNLF-EGTI 1188 (1343)
Q Consensus 1111 ~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iVp-Qdp~lF-~gTI 1188 (1343)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 345788999997 667776 4699
Q ss_pred hhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCC
Q 000702 1189 RCNLDPL---EEHSDR----EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261 (1343)
Q Consensus 1189 r~NLdp~---~~~sd~----ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaT 1261 (1343)
++|+... ...+.+ .+.++++..++.+.. |+.+ ..||+|||||++||||++.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998532 122222 345566666665433 3333 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEeCCEEeeec
Q 000702 1262 ASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFD 1313 (1343)
Q Consensus 1262 s~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g 1313 (1343)
++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999997643 6899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=325.48 Aligned_cols=195 Identities=25% Similarity=0.415 Sum_probs=171.5
Q ss_pred eEEEEEEEEEEcCCC-------CcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH
Q 000702 1096 TIELIDLKVRYGENL-------PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~-------~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~ 1168 (1343)
-++++|++..|+... -.+++||||+|++||.+||||.|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 488999999996432 25899999999999999999999999999999999999999999999999987766
Q ss_pred HHhhcceeecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCch-HHhcccCCCCcccccCCCCCChhHHHHHHHHHH
Q 000702 1169 DLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGD-IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1169 ~LR~~i~iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1247 (1343)
.+..++++.+.|+.+|+.+ +..+.| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 2233567999999999876 444444 4689999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcCCc
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1248 LL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~~~ 1324 (1343)
|.-+|+++|+|||||+||....++|...+.+.- .+-|.++|||+++.+.. ||||.||..|+|+|.|+-+++++++.-
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999887643 37899999999999987 999999999999999999999998876
Q ss_pred HHHHHH
Q 000702 1325 MFLKLV 1330 (1343)
Q Consensus 1325 ~f~~l~ 1330 (1343)
-|-+..
T Consensus 204 pYTk~L 209 (268)
T COG4608 204 PYTKAL 209 (268)
T ss_pred HHHHHH
Confidence 665444
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=338.74 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=168.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------- 515 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 589999999984 2579999999999999999999999999999999999874 5899999876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCC---C-C----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSP---M-D----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++.+.+ .+..+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 2799999999988999999987631 1 1 12333344444443222 1234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999877765 4555555789999999999885 499999999999999999998
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14242 235 IFTR 238 (253)
T ss_pred HHcC
Confidence 8643
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.28 Aligned_cols=189 Identities=24% Similarity=0.427 Sum_probs=156.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 516 (1343)
++++|++++|+. ..+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPG-GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecC-CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 688999999853 2246999999999999999999999999999999999999999999999872
Q ss_pred -EEEEcccccccC-ccHHHHhccCCC---CC----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 517 -AAYVSQSAWIQS-GNIEENILFGSP---MD----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 517 -i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
++|++|++.++. .|++||+.++.. .+ +++..++++.+++.+. ......+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK-----------AHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHH
Confidence 799999998775 699999987521 11 2233444444444322 234556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRI 653 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i 653 (1343)
|||++.+|+++||||||++||+.+.+.+.+. +... .+|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998887764 4443 358999999999998865 999999999974
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=315.06 Aligned_cols=159 Identities=36% Similarity=0.574 Sum_probs=147.8
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH-HHhhcce
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH-DLRSRLG 1175 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~-~LR~~i~ 1175 (1343)
|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999743 699999999999999999999999999999999999999999999999999888764 4677899
Q ss_pred eecCCccccCCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000702 1176 IIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255 (1343)
Q Consensus 1176 iVpQdp~lF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~IL 1255 (1343)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1256 VLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1256 lLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. |||+++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998764 47899999999998765 99999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=336.81 Aligned_cols=198 Identities=31% Similarity=0.430 Sum_probs=162.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 515 (1343)
++++|++++|.. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 368899998842 25799999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccccC-ccHHHHhccCCC------------CCHH---HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCCh
Q 000702 516 TAAYVSQSAWIQS-GNIEENILFGSP------------MDKA---KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSG 579 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~-~ti~~Ni~~g~~------------~~~~---~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSg 579 (1343)
.++|++|++.++. .|++||+.++.. ..++ +..++++.++ ........+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG-----------LLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcC-----------ChhhhCCCcccCCH
Confidence 2799999988765 799999987532 0111 1222222222 22334567789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEe
Q 000702 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQA 656 (1343)
Q Consensus 580 GQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~ 656 (1343)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +..+ . .|+|+|++||+++.+. .||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999998887664 4443 2 3899999999999987 5999999999999999
Q ss_pred cChHHHH
Q 000702 657 GKYDDLL 663 (1343)
Q Consensus 657 g~~~~l~ 663 (1343)
|+++++.
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=352.51 Aligned_cols=202 Identities=25% Similarity=0.391 Sum_probs=167.5
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
++++|++++|+... ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999985212 35799999999999999999999999999999999999999999999986
Q ss_pred -eEEEEcccccccC-ccHHHHhccCCC---CCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 -TAAYVSQSAWIQS-GNIEENILFGSP---MDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 -~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++|++|++.++. .|++||+.++.. .+... ..+.++..++ .........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-----------SDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 3899999998875 799999988632 22222 2223333332 22344567789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|||||+.+|+++||||||++||+.+.+.+.+. +..+ . .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998887754 4443 2 38999999999998765 9999999999999999999987
Q ss_pred hc
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=337.01 Aligned_cols=204 Identities=26% Similarity=0.367 Sum_probs=168.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 515 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 689999999984 25799999999999999999999999999999999999987 489999876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCCC----CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSPM----DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.+++.|++|||.|+... +. ++..++++.+++...+ ++ ....++.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~----~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KD----KLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HH----HHhCCcccCCHHHH
Confidence 27999999999999999999986421 21 1223334444432211 11 23456789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999887765 45555567999999999998754 99999999999999999999
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+...
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=345.34 Aligned_cols=201 Identities=28% Similarity=0.440 Sum_probs=166.5
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------eE
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TA 517 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 517 (1343)
..++++|++++|. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 3699999999984 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEccccccc-CccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHH
Q 000702 518 AYVSQSAWIQ-SGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589 (1343)
Q Consensus 518 ~~v~Q~~~l~-~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lAR 589 (1343)
|||||++.++ +.|++||+.|... .+.. +.+++++.+++.. .......+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-----------KADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCchhhCCHHHHHHHHHHH
Confidence 9999998876 4799999985321 1222 2223333333321 123345689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000702 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 590 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||..+|++++|||||++||+.+.+.+++. +..+ .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999998887664 4444 358999999999999865 999999999999999999998643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=373.83 Aligned_cols=212 Identities=22% Similarity=0.318 Sum_probs=183.0
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHH-hhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL-RSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~L-R~~i 1174 (1343)
-|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988776553 4679
Q ss_pred eeecCCccccCC-chhhhcCCCC-------CC---C----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE-------EH---S----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~-------~~---s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1239 (1343)
+||||++.+|.+ |+++|+.... .. + .+++.++++.+++.+. ++.++ .+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cccch----hhCCHHHH
Confidence 999999998875 9999996421 10 1 2346677888777543 23333 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhH
Q 000702 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGR 1317 (1343)
Q Consensus 1240 Qrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~e 1317 (1343)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.+ ||||++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998754 36899999999999875 99999999999999999998
Q ss_pred Hhh
Q 000702 1318 LLE 1320 (1343)
Q Consensus 1318 Ll~ 1320 (1343)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=340.18 Aligned_cols=202 Identities=26% Similarity=0.435 Sum_probs=169.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------A 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 517 (1343)
.++++|+++.|.. ..+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999853 2357999999999999999999999999999999999999999999999882 7
Q ss_pred EEEcccc--cccCccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSA--WIQSGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+| .+++.||+|||.++.. .++ ++..++++.++|...+ .....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL-----------NREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 4678899999998632 222 2334445555554333 344568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-A-NKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~-~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||++.+|+++||||||++||+.+.+.+++. +..+. + |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999998888764 44433 3 8999999999998878999999999999999999887653
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=336.86 Aligned_cols=202 Identities=26% Similarity=0.411 Sum_probs=167.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCC-----CcEEEECC-----------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI-----SGEVRLCG----------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g----------- 515 (1343)
++++|++++|. +.++++|+||+|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 68999999984 246999999999999999999999999999999999999998 99999876
Q ss_pred ----eEEEEcccccccCccHHHHhccCCC----CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 516 ----TAAYVSQSAWIQSGNIEENILFGSP----MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 516 ----~i~~v~Q~~~l~~~ti~~Ni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
.++|++|+++++..|++||+.++.. .+. ++.+++++..++..+++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 2799999999988999999987532 111 12233334444432111 2345667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHH
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 662 (1343)
|++||||++.+|+++||||||++||+.+...+++ +++...+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999887765 4555545689999999999876 4999999999999999999887
Q ss_pred Hh
Q 000702 663 LQ 664 (1343)
Q Consensus 663 ~~ 664 (1343)
..
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 64
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=371.20 Aligned_cols=212 Identities=23% Similarity=0.333 Sum_probs=181.6
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHH-Hhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD-LRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~-LR~~i 1174 (1343)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999997665544 46789
Q ss_pred eeecCCccccCC-chhhhcCCCC-------CCCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE-------EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~-------~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1242 (1343)
+|+||+|.+|.. |+++|+.... ..+. +++.++++..++.+.. |.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-------DKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-------cCch----hhCCHHHHHHH
Confidence 999999988875 9999997421 1121 3466777887775432 3333 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhh
Q 000702 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1243 ~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~ 1320 (1343)
+|||||+.+|++|||||||++||+++...+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 36899999999999865 99999999999999999988753
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=333.19 Aligned_cols=196 Identities=26% Similarity=0.361 Sum_probs=161.7
Q ss_pred eEEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------
Q 000702 451 AIQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 515 (1343)
.++++|+++.|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999985322 24799999999999999999999999999999999999999999999986
Q ss_pred ---eEEEEcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 ---TAAYVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 ---~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++|++|++.++. .|++||+.++.. .+.. +..++++.+++ .........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence 2799999998876 499999987421 2221 22333333333 233455678899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 658 (1343)
++||||++.+|+++||||||++||+.+.+.+.+. +... . +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999998877654 4443 2 4899999999999988889999999999998775
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=327.00 Aligned_cols=194 Identities=23% Similarity=0.345 Sum_probs=168.2
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999974 36999999999999999999999999999999999999999999999999997654 456788999
Q ss_pred ecCCccccC-CchhhhcCCCC----CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcC
Q 000702 1177 IPQDPNLFE-GTIRCNLDPLE----EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ 1251 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~~----~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~ 1251 (1343)
+||++.++. .|+++|+.... ...++++.++++..++.++... . ...||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-------P----VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-------C----hhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996431 1345678889999999765432 2 257999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEE
Q 000702 1252 ARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVL 1304 (1343)
Q Consensus 1252 ~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl 1304 (1343)
|++|+|||||++||+++...+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998763 46899999999999965 4577766
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=327.64 Aligned_cols=191 Identities=25% Similarity=0.368 Sum_probs=161.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~v 520 (1343)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|..+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 46899999884 35799999999999999999999999999999999999999999999987 37999
Q ss_pred ccccccc-CccHHHHhccCCC---CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000702 521 SQSAWIQ-SGNIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 521 ~Q~~~l~-~~ti~~Ni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ 596 (1343)
+|++.++ +.|++||+.++.. .++++.+++++..++.+. .......||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS-----------AKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 6899999987532 234455555665555433 234567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 597 illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
++||||||++||+.+.+.+.+. +... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999998887654 4443 358999999999998865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=339.38 Aligned_cols=199 Identities=27% Similarity=0.460 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------eE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------TA 517 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 517 (1343)
++++|++++|.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 678999999842 35699999999999999999999999999999999999999999999886 27
Q ss_pred EEEccccc--ccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSAW--IQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+|. +++.|++|||.++.. .+.. +.+++++.+++. ......+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-----------KYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-----------HHhcCCcccCCHHHHHHHHHH
Confidence 99999986 567899999988642 2222 233333333332 233456678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
||++.+|+++||||||++||+.+...+++. ++.+ .+|+|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999998887765 4433 35899999999999987899999999999999999988754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=331.59 Aligned_cols=190 Identities=33% Similarity=0.470 Sum_probs=155.5
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46889999985311 15799999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcccccccCc-cHHHHhccCCCC---CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 --TAAYVSQSAWIQSG-NIEENILFGSPM---DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 --~i~~v~Q~~~l~~~-ti~~Ni~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.++|++|++.++.. |++||+.++..+ +. ++..++++.+++ .........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence 37999999988865 999999886432 11 223333333333 2334456678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCCeE
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRI 653 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G~i 653 (1343)
+||||++.+|+++||||||++||+.+.+.+.+. +.... +|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMEL-LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999998777654 54443 38999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=330.88 Aligned_cols=198 Identities=30% Similarity=0.465 Sum_probs=162.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------eE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------TA 517 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 517 (1343)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 46889999874 35799999999999999999999999999999999999999999999887 27
Q ss_pred EEEcccccccCc-cHHHHhccCCCCC--HH---HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 518 AYVSQSAWIQSG-NIEENILFGSPMD--KA---KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 518 ~~v~Q~~~l~~~-ti~~Ni~~g~~~~--~~---~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
+|++|++.++.. |++||+.++.... .+ +..++++.+ . +.......+..+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~----~l~~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------P----RLKERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------H----hhhhhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999988775 9999998864321 11 112222221 1 112234466788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
..+|+++||||||++||+.+.+.+.+. ++.. .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999998877654 4443 358999999999998755 9999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=386.06 Aligned_cols=216 Identities=23% Similarity=0.298 Sum_probs=190.6
Q ss_pred ceEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcc
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
..|+++|++++|+++..++|+|+||++++||++||+|+||||||||+++|.|++.|++|+|.++|.|+.. .....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999975 566789999
Q ss_pred eeecCCccccCC-chhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE---EHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~---~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
|++||++.+|+. |++|||..+. ..+ ++++.+.|+.++|.+...+ .+ .+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-------~~----~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-------EA----QDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-------Ch----hhCCHHHHHHHHHHH
Confidence 999999999975 9999996421 122 2457788888888655332 22 579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhcC
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~~ 1322 (1343)
||+.+|+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++-
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999999998778999999999999865 9999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=330.70 Aligned_cols=198 Identities=25% Similarity=0.428 Sum_probs=164.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe------------EEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------AAY 519 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 519 (1343)
++++|+++.|.. ..+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKK-GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCC-CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 468899998843 1257999999999999999999999999999999999999999999999873 799
Q ss_pred Eccccccc-CccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQ-SGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~-~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
++|++.++ ..|++||+.++.. .+. ++.+++++.+++.+ .......+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-----------KANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhChhhhCCHHHHHHHHHHHHH
Confidence 99999887 6899999987421 122 23344444444432 22345578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 662 (1343)
+.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999887765 45555557999999999998865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=341.49 Aligned_cols=203 Identities=28% Similarity=0.472 Sum_probs=166.6
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe------------
Q 000702 451 AIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------ 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 516 (1343)
.++++|+++.|.+.. .+++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999985321 257999999999999999999999999999999999999999999999772
Q ss_pred -----EEEEcccc--cccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 517 -----AAYVSQSA--WIQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 517 -----i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
++|++|+| .++..|++|||.|+.. .+.+ +.+++++.+++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 69999998 5778899999987532 2222 2233333333321 123456778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+ ++..+ .+|+|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999777765 45444 35899999999999876 59999999999999999998
Q ss_pred HHHh
Q 000702 661 DLLQ 664 (1343)
Q Consensus 661 ~l~~ 664 (1343)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.09 Aligned_cols=203 Identities=26% Similarity=0.423 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------eEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TAAY 519 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~~ 519 (1343)
++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 67899999984 35799999999999999999999999999999999999999999999987 2799
Q ss_pred Ecccccc-cCccHHHHhccCCC---CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCC
Q 000702 520 VSQSAWI-QSGNIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595 (1343)
Q Consensus 520 v~Q~~~l-~~~ti~~Ni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~ 595 (1343)
++|++.+ +..|++||+.++.. .......+.+ .+.++.+ |.....+.+..+||||||||++||||++.+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERI-----AALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999877 67899999987532 2222111111 1112222 3334456777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 596 DIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 596 ~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+++||||||++||+.+.+.+.+. +..+. +|+|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999998887754 44443 48999999999998878999999999999999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=379.15 Aligned_cols=223 Identities=24% Similarity=0.339 Sum_probs=182.6
Q ss_pred eEEEEEEEEEEcCC--CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecC----------
Q 000702 1096 TIELIDLKVRYGEN--LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIS---------- 1163 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~---------- 1163 (1343)
-|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---HHh-hcceeecCCc--cccC-CchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcccCCCCcccc
Q 000702 1164 TIGLH---DLR-SRLGIIPQDP--NLFE-GTIRCNLDPL----EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVL 1228 (1343)
Q Consensus 1164 ~i~l~---~LR-~~i~iVpQdp--~lF~-gTIr~NLdp~----~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~ 1228 (1343)
+.+.. .+| ++|++|+|+| .++. -|+++|+... ...+ .+++.++|+.+++.+.- .-++..+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~~~~- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILSRYP- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHhCCC-
Confidence 22322 334 4799999999 5776 4999999631 1122 24577788888885310 0122222
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCcccccc-cCEEEEEe
Q 000702 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLS 1305 (1343)
Q Consensus 1229 e~G~nLSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~ 1305 (1343)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|+
T Consensus 167 ---~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 167 ---HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 57999999999999999999999999999999999999999999998652 7899999999999866 99999999
Q ss_pred CCEEeeecChhHHhhcCCcHH
Q 000702 1306 DGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1306 ~G~ive~g~p~eLl~~~~~~f 1326 (1343)
+|+|++.|++++++..+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999986544333
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=334.00 Aligned_cols=195 Identities=30% Similarity=0.365 Sum_probs=163.7
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------eEEEEcc
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------TAAYVSQ 522 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~~v~Q 522 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 12 ~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred cEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 599999999984 35799999999999999999999999999999999999999999999987 3899999
Q ss_pred cccccC-ccHHHHhccCCCC-CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 000702 523 SAWIQS-GNIEENILFGSPM-DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLL 600 (1343)
Q Consensus 523 ~~~l~~-~ti~~Ni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illL 600 (1343)
++.++. .|++||+.++... .+++..++++..++.+ .......+||||||||++||||++.+|+++||
T Consensus 89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllL 157 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRPGLLLL 157 (257)
T ss_pred CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998776 7999999886421 1233444454444432 23456789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 601 DDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 601 Dep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
||||++||+.+.+.+.+. +..+ . .++|+|++||+++.+. .||+|++|++|+++++|+.+
T Consensus 158 DEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 158 DEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred eCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999998877654 4443 2 4799999999999875 59999999999999887653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=328.67 Aligned_cols=189 Identities=33% Similarity=0.514 Sum_probs=154.5
Q ss_pred EEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------EEEEccccc
Q 000702 454 IENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------AAYVSQSAW 525 (1343)
Q Consensus 454 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q~~~ 525 (1343)
++|++++|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEEC---CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 578899884 256999999999999999999999999999999999999999999999883 899999987
Q ss_pred c---cCccHHHHhccCCCC--------C---HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 526 I---QSGNIEENILFGSPM--------D---KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 526 l---~~~ti~~Ni~~g~~~--------~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
+ ++.|++||+.++... . +++.+++++.+++.+. ......+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-----------ADRQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHHHHHHH
Confidence 6 568999999876431 1 1233444454444332 2345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
..+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999888766433322368999999999998865 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.13 Aligned_cols=200 Identities=25% Similarity=0.459 Sum_probs=168.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|++++|.. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999842 357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEcccc--cccCccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 517 -AAYVSQSA--WIQSGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 517 -i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
++|++|+| .+++.|++||+.++.. +.. ++.+++++.+++.. .....+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 69999998 5788999999987532 222 22334444444432 234667899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-A-NKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~-~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
|||||+.+|+++||||||++||+.+.+.+.+. +..+. + |+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999998877654 44433 3 899999999999986 59999999999999999999886
Q ss_pred h
Q 000702 664 Q 664 (1343)
Q Consensus 664 ~ 664 (1343)
.
T Consensus 231 ~ 231 (283)
T PRK13636 231 A 231 (283)
T ss_pred c
Confidence 5
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.86 Aligned_cols=201 Identities=26% Similarity=0.422 Sum_probs=164.3
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
++++|++++|.... .+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999985311 12799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 516 -TAAYVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 -~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
.++|++|++.++. .|++||+.++.. .+.. +..+.++..++ .........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHHHHHHH
Confidence 2799999999886 699999987532 2221 22223333333 23344566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
||||++.+|+++||||||++||+.+.+.+.+. +..+ . .|+|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999998877654 4443 3 38999999999998765 9999999999999999988875
Q ss_pred h
Q 000702 664 Q 664 (1343)
Q Consensus 664 ~ 664 (1343)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=368.26 Aligned_cols=212 Identities=18% Similarity=0.232 Sum_probs=184.5
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999974 34999999999999999999999999999999999999999999999999887777777888899
Q ss_pred eecCCccc--c-------CCchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1176 IIPQDPNL--F-------EGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1176 iVpQdp~l--F-------~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
++||+|.+ + ..|+++|+.... ..++++.++++..++.+.... ++ ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-------~~----~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALLDR-------RF----KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhhhC-------Cc----ccCCHHHHHHHHHHH
Confidence 99999753 2 358999886431 234567888999988654433 22 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHhhc
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl~~ 1321 (1343)
||+.+|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999987643 6899999999999876 999999999999999999998753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=350.89 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=168.3
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EE
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AA 518 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~ 518 (1343)
..++++|++++|. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3699999999984 357999999999999999999999999999999999999999999999883 79
Q ss_pred EEcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHH
Q 000702 519 YVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARA 590 (1343)
Q Consensus 519 ~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARa 590 (1343)
||+|++-+|. .||+|||.|+.. .+.. +..++++..++. ........+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-----------EFAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHHH
Confidence 9999998885 599999998743 2222 223333333332 22345567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 591 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|+.+|+++|||||||+||+...+.+.+.+..... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999998877654433222 3899999999999864 5999999999999999999998754
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=328.97 Aligned_cols=194 Identities=24% Similarity=0.371 Sum_probs=158.8
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------eEE
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 518 (1343)
++++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999985321 12799999999999999999999999999999999999999999999987 379
Q ss_pred EEcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHH
Q 000702 519 YVSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARA 590 (1343)
Q Consensus 519 ~v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARa 590 (1343)
|++|++.++. .|++||+.+... .+. ++..++++..++ .........+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHHHH
Confidence 9999998887 599999976422 111 222333333333 333456778899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 591 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
++.+|+++||||||++||+.+.+.+.+. +... .+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999998777654 4443 358999999999998764 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=332.26 Aligned_cols=202 Identities=28% Similarity=0.420 Sum_probs=163.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------eE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------TA 517 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 517 (1343)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 46889999984 35799999999999999999999999999999999999999999999876 27
Q ss_pred EEEcccccccCc-cHHHHhccCCC---CCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 000702 518 AYVSQSAWIQSG-NIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593 (1343)
Q Consensus 518 ~~v~Q~~~l~~~-ti~~Ni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~ 593 (1343)
+|++|++.++.. |++||+.++.+ .......+.+ .+.++.+ |..........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999988775 99999987532 1111111111 1112222 33344556778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 594 ~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
+|+++||||||++||+.+.+.+.+. ++.. .+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999998877654 4443 35899999999998765 499999999999999999888753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=340.15 Aligned_cols=198 Identities=32% Similarity=0.442 Sum_probs=162.6
Q ss_pred EEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------------
Q 000702 453 QIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----------------- 515 (1343)
Q Consensus 453 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 515 (1343)
.++|+++.|. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4557777663 35789999999999999999999999999999999999999999999876
Q ss_pred eEEEEccccccc-CccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 TAAYVSQSAWIQ-SGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 ~i~~v~Q~~~l~-~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
.++|++|++.++ +.|++||+.++.. ++. ++..++++.+++.+. +.....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW-----------EHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCCcccCCHHHHHHHHH
Confidence 379999999887 5799999987532 222 233444444444332 334556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|||++.+|+++||||||++||+.+.+.+.+. +..+. .|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999998877654 44432 3899999999999875 499999999999999999998865
Q ss_pred c
Q 000702 665 A 665 (1343)
Q Consensus 665 ~ 665 (1343)
.
T Consensus 251 ~ 251 (269)
T cd03294 251 N 251 (269)
T ss_pred C
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=334.73 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=169.4
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 515 (1343)
..++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 3689999999984 2479999999999999999999999999999999999986 4899998876
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC----CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP----MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++ .+.+++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 3789999999988999999987632 222 2233444444443222 233556788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||++||||++.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999877765 4544446789999999999886 49999999999999999998
Q ss_pred HHHh
Q 000702 661 DLLQ 664 (1343)
Q Consensus 661 ~l~~ 664 (1343)
++..
T Consensus 241 ~~~~ 244 (260)
T PRK10744 241 TIFT 244 (260)
T ss_pred HHHh
Confidence 8864
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=350.74 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=168.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 588999999984 36799999999999999999999999999999999999999999999988 27
Q ss_pred EEEcccccc-cCccHHHHhccCCC-----C---C---HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 518 AYVSQSAWI-QSGNIEENILFGSP-----M---D---KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 518 ~~v~Q~~~l-~~~ti~~Ni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
+||+|++.+ ++.|++||+.++.. + . .++.+++++..++.+ .......+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-----------~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-----------FADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHH
Confidence 999999876 78999999988742 1 1 223344444444432 22345678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHH
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
+|||||+++|+++||||||++||+.....+++. ++.+ .+|+|+|++||+++.+. .||++++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLEL-VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999998887654 4443 35899999999999985 59999999999999999999987
Q ss_pred hc
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 53
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.74 Aligned_cols=191 Identities=29% Similarity=0.441 Sum_probs=157.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------eEEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~v 520 (1343)
++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999998842 5799999999999999999999999999999999999999999999987 38999
Q ss_pred cccccccC-ccHHHHhccCCC---CCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 521 SQSAWIQS-GNIEENILFGSP---MDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 521 ~Q~~~l~~-~ti~~Ni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
+|++.++. .|++||+.++.. .+.++ ..++++..++ .........+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----------EHLLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HHHHhCChhhCCHHHHHHHHHHHHHh
Confidence 99998874 699999987632 22222 2223333333 22344566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
.+|+++||||||++||+++.+.+.+. ++.. . .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999998887654 4443 2 38999999999998765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=334.56 Aligned_cols=201 Identities=31% Similarity=0.458 Sum_probs=163.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 518 (1343)
++++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 3678999998531 5699999999999999999999999999999999999999999999987 379
Q ss_pred EEcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHH
Q 000702 519 YVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARA 590 (1343)
Q Consensus 519 ~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARa 590 (1343)
|++|+|.++. .|++||+.++.. .+.+ +..++++..++.. .....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 799999987632 2211 2222333332221 013456678999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 591 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
++.+|+++||||||++||+.+.+.+.+. +... . +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999997777654 4443 2 3899999999999765 599999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=338.37 Aligned_cols=202 Identities=28% Similarity=0.430 Sum_probs=168.9
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCC---cEEEECC-----------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS---GEVRLCG----------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g----------- 515 (1343)
..++++|+++.|+. ..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPD-SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCC-CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 36899999999853 23579999999999999999999999999999999999999987 8999887
Q ss_pred --eEEEEccccc--ccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 --TAAYVSQSAW--IQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 --~i~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++|++|+|+ +++.|++|||.|+.. .+.+ +..++++.+++.+ .......+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCCHHHHHH
Confidence 3799999984 678999999998632 2222 2334444444433 2345567999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 662 (1343)
++||||++.+|+++||||||++||+.+.+.+.+. +..+. .|+|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999998887664 44432 38999999999998878999999999999999999887
Q ss_pred Hh
Q 000702 663 LQ 664 (1343)
Q Consensus 663 ~~ 664 (1343)
..
T Consensus 231 ~~ 232 (282)
T PRK13640 231 FS 232 (282)
T ss_pred hc
Confidence 64
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=336.04 Aligned_cols=205 Identities=22% Similarity=0.392 Sum_probs=169.6
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC--------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG-------- 515 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 515 (1343)
...++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 34799999999984 35799999999999999999999999999999999999975 899999877
Q ss_pred -------eEEEEcccccccCccHHHHhccCCC---C--CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCCh
Q 000702 516 -------TAAYVSQSAWIQSGNIEENILFGSP---M--DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSG 579 (1343)
Q Consensus 516 -------~i~~v~Q~~~l~~~ti~~Ni~~g~~---~--~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSg 579 (1343)
.++|++|+|.++..|++||+.++.. . .. ++.+++++.+++.+.+. +..+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 2799999999998899999987632 1 11 22334444444432221 234567789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecC
Q 000702 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 580 GQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 658 (1343)
|||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999777654 55555557899999999998854 99999999999999999
Q ss_pred hHHHHh
Q 000702 659 YDDLLQ 664 (1343)
Q Consensus 659 ~~~l~~ 664 (1343)
.+++..
T Consensus 246 ~~~~~~ 251 (267)
T PRK14235 246 TEKMFT 251 (267)
T ss_pred HHHHHh
Confidence 988864
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=341.89 Aligned_cols=201 Identities=27% Similarity=0.404 Sum_probs=165.2
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------eE
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TA 517 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 517 (1343)
..++++|++++|. ++++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 3689999999984 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEccccccc-CccHHHHhccC-C--CCCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHH
Q 000702 518 AYVSQSAWIQ-SGNIEENILFG-S--PMDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589 (1343)
Q Consensus 518 ~~v~Q~~~l~-~~ti~~Ni~~g-~--~~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lAR 589 (1343)
+|++|++.++ ..|++||+.+. . ..+... .+++++.+++. ........+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-----------SKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hHhcCchhhCCHHHHHHHHHHH
Confidence 9999998877 57999999752 1 122221 22223333222 2233456789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000702 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 590 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999888766443333358999999999998865 99999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=368.43 Aligned_cols=220 Identities=24% Similarity=0.384 Sum_probs=182.9
Q ss_pred eEEEEEEEEEEcCC--CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CcceEEEcCeecCCCChH
Q 000702 1096 TIELIDLKVRYGEN--LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP-----ACGRIIIDNIDISTIGLH 1168 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~l~ 1168 (1343)
-|+++|++++|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 24699999999999999999999999999999999999986 799999999999877654
Q ss_pred H---Hh-hcceeecCCcc--ccC-CchhhhcCC----CCCCC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCC
Q 000702 1169 D---LR-SRLGIIPQDPN--LFE-GTIRCNLDP----LEEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1169 ~---LR-~~i~iVpQdp~--lF~-gTIr~NLdp----~~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1233 (1343)
+ +| ++++||||+|. ++. -|+++|+.. ....+ .+++.++++.+++.+.... +|..+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~----~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTDYP----HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhhCC----cc
Confidence 3 33 57999999985 443 488888741 11111 2457788999988642211 12222 57
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCcccccc-cCEEEEEeCCEEe
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310 (1343)
Q Consensus 1234 LSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~iv 1310 (1343)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998854 37899999999999875 9999999999999
Q ss_pred eecChhHHhhcCC
Q 000702 1311 EFDTPGRLLEDKS 1323 (1343)
Q Consensus 1311 e~g~p~eLl~~~~ 1323 (1343)
+.|++++++..+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999986543
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=322.68 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=165.9
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999974 359999999999999999999999999999999999999999999999999875 34567889999
Q ss_pred ecCCcccc-CCchhhhcCCCC--CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCCC
Q 000702 1177 IPQDPNLF-EGTIRCNLDPLE--EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253 (1343)
Q Consensus 1177 VpQdp~lF-~gTIr~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~~ 1253 (1343)
+||++.++ ..|+++|+.... ...+..+.++++..++.+.. |.++ .+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999987 579999986321 12334677788888775433 2333 3699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccccCEEEE
Q 000702 1254 ILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLV 1303 (1343)
Q Consensus 1254 ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIlv 1303 (1343)
+|||||||++||..+.+.+.+.|++.. +++|+|++||+.+.+.+||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999753 47899999999999999996543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=344.86 Aligned_cols=203 Identities=27% Similarity=0.412 Sum_probs=166.9
Q ss_pred CcceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------
Q 000702 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------ 515 (1343)
Q Consensus 448 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 515 (1343)
....|+++|++++|. ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 38 STVAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114 (340)
T ss_pred CceeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhc
Confidence 344699999999984 35799999999999999999999999999999999999999999999987
Q ss_pred eEEEEccccccc-CccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 TAAYVSQSAWIQ-SGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 ~i~~v~Q~~~l~-~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
.++|+||++.++ ..|++||+.+... .+.. +.+++++.+++ ++ ....+..+||||||||++|
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~----~~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ES----KADARVSDLSGGMKRRLTL 183 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ch----hhCCChhhCCHHHHHHHHH
Confidence 389999998875 6799999975321 1222 12223333322 21 2234556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
||||..+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 184 A~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999888876543333358999999999999865 99999999999999999999864
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=297.65 Aligned_cols=221 Identities=29% Similarity=0.449 Sum_probs=189.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCC----------
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI---------- 1165 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i---------- 1165 (1343)
.++++|+..+|++. .|||+||++.++|+.|.|+|.|||||||+++++.=+-.|+.|+|.++|..|+..
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999865 499999999999999999999999999999999999999999999999887532
Q ss_pred ---ChHHHhhcceeecCCccccCC-chhhhcC--CCC---CCCHHHH---HHHHHHcCCchHHhcccCCCCcccccCCCC
Q 000702 1166 ---GLHDLRSRLGIIPQDPNLFEG-TIRCNLD--PLE---EHSDREI---WEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1166 ---~l~~LR~~i~iVpQdp~lF~g-TIr~NLd--p~~---~~sd~ei---~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1233 (1343)
.++.+|.++++|+|+-.|.+- |+-+|.- |-. .-.++.+ ..-|.++|+.+.-..-| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 245689999999999999975 9999984 432 2223333 34578899887665444 46
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEee
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1234 LSgGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive 1311 (1343)
|||||+||.+|||||.-+|+++++|||||+||+|--..+.+.+++.. .++|+++|||.+....+ +..|+.|++|.|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 89999999999999999999999999999999999888888887754 48999999999999988 88999999999999
Q ss_pred ecChhHHhhcCCc-HHHHH
Q 000702 1312 FDTPGRLLEDKSS-MFLKL 1329 (1343)
Q Consensus 1312 ~g~p~eLl~~~~~-~f~~l 1329 (1343)
.|+|+++..++.| ..++.
T Consensus 233 ~G~P~qvf~nP~S~RlkqF 251 (256)
T COG4598 233 EGPPEQVFGNPQSPRLKQF 251 (256)
T ss_pred cCChHHHhcCCCCHHHHHH
Confidence 9999999999877 33443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.16 Aligned_cols=205 Identities=23% Similarity=0.397 Sum_probs=168.1
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc--C---CCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP--K---ISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g--------- 515 (1343)
..++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 3689999999884 3579999999999999999999999999999999999987 3 589998876
Q ss_pred ------eEEEEcccccccCccHHHHhccCCCC----CHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSPM----DKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.++|++|++.++..|++||+.|+... +++. .+++++..++.+.+ .+..+..+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHH
Confidence 27999999999989999999876321 2221 22233333332221 123456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||++||||++.+|+++||||||++||+++...+.+ ++....+++|+|++||+++.+. .||+|++|++|+++++|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999777754 5655556799999999999876 49999999999999999999
Q ss_pred HHHhc
Q 000702 661 DLLQA 665 (1343)
Q Consensus 661 ~l~~~ 665 (1343)
++...
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98653
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=324.68 Aligned_cols=195 Identities=23% Similarity=0.265 Sum_probs=167.9
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999998752 3466799
Q ss_pred eecCCccccCC-chhhhcCCC----CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhc
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPL----EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1176 iVpQdp~lF~g-TIr~NLdp~----~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~ 1250 (1343)
|+||+|.+|.+ |+++|+... +...++.+.++++..++.+. +++.+ .+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999998532 22233456778888877543 23333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeC
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSD 1306 (1343)
Q Consensus 1251 ~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~ 1306 (1343)
+|++|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ |||+++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998653 46899999999999865 999999985
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=339.14 Aligned_cols=203 Identities=25% Similarity=0.450 Sum_probs=165.6
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe------------
Q 000702 451 AIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------ 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 516 (1343)
.++++|++++|.... .+++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999985321 146999999999999999999999999999999999999999999998772
Q ss_pred -----EEEEcccc--cccCccHHHHhccCCC---CCHHHH----HHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 517 -----AAYVSQSA--WIQSGNIEENILFGSP---MDKAKY----KKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 517 -----i~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~~~----~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
++|++|+| .+++.|++|||.++.. .+.+.. +++++..++.. .....+..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 79999998 6788999999987532 222222 22222222221 123456788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+. +..+ .+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998877654 4443 34899999999999886 49999999999999999998
Q ss_pred HHHh
Q 000702 661 DLLQ 664 (1343)
Q Consensus 661 ~l~~ 664 (1343)
++..
T Consensus 231 ~~~~ 234 (280)
T PRK13649 231 DIFQ 234 (280)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=340.08 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=164.0
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------
Q 000702 451 AIQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 515 (1343)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 589999999985321 13599999999999999999999999999999999999999999998876
Q ss_pred -----eEEEEccccc--ccCccHHHHhccCCC---CCHHHH-H---HHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 -----TAAYVSQSAW--IQSGNIEENILFGSP---MDKAKY-K---KVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 -----~i~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~~~~-~---~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.++|++|+|. ++..|++||+.|+.. ...+.. + ++++.+++ +. ...+....+|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~Gq 155 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSGGQ 155 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCHHH
Confidence 2799999984 677899999988642 122111 1 12222222 11 12346678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecC
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~ 658 (1343)
|||++||||++.+|+++||||||++||+.+.+.+++. +..+. .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999998777654 44432 3899999999999875 599999999999999999
Q ss_pred hHHHHh
Q 000702 659 YDDLLQ 664 (1343)
Q Consensus 659 ~~~l~~ 664 (1343)
++++..
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=330.64 Aligned_cols=198 Identities=30% Similarity=0.452 Sum_probs=164.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------e
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------------T 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 516 (1343)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 67899999984 35799999999999999999999999999999999999999999999887 2
Q ss_pred EEEEcccccccC-ccHHHHhccCCC----CCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSP----MDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~----~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
++|++|++.++. .|++||+.++.. .+... ..++++.. |.......+...||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKV-----------GLAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CChHHHhcChhhcCHHHHHHHHH
Confidence 799999988775 699999988631 22221 22222222 33333455678899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|||++.+|+++||||||++||+++.+.+.+ ++... .+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999999999887765 45443 358999999999999865 99999999999999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=336.20 Aligned_cols=203 Identities=28% Similarity=0.433 Sum_probs=168.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999998633334699999999999999999999999999999999999999999999987 27
Q ss_pred EEEccccc--ccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSAW--IQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+|. ++..|+.|||.++.. ...+ +++++++.+++.. ........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-----------FKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHHHHHHHH
Confidence 99999983 678899999987632 2222 2334444444432 12345678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-A-NKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~-~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||++.+|+++||||||++||+.+.+.+.+. +..+. + |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999998887654 44443 3 8999999999999878999999999999999999988653
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=314.63 Aligned_cols=166 Identities=35% Similarity=0.609 Sum_probs=150.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe------------EEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------AAY 519 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 519 (1343)
++++|++++|.. ..+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPE-QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCC-CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 468899999853 2247999999999999999999999999999999999999999999999883 799
Q ss_pred EcccccccCccHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 000702 520 VSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYL 599 (1343)
Q Consensus 520 v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ill 599 (1343)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEec
Q 000702 600 LDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAG 657 (1343)
Q Consensus 600 LDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g 657 (1343)
|||||++||+.+.+.+++. +....+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999998877654 44445689999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=334.54 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=166.0
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 515 (1343)
+.++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 3589999999984 35799999999999999999999999999999999999999999998876
Q ss_pred ------------eEEEEcccccccC-ccHHHHhccCC----CCCHH----HHHHHHHHhhhhhhHhhccCCCcccc-CCC
Q 000702 516 ------------TAAYVSQSAWIQS-GNIEENILFGS----PMDKA----KYKKVIHACSLKKDLELFSHGDQTII-GDR 573 (1343)
Q Consensus 516 ------------~i~~v~Q~~~l~~-~ti~~Ni~~g~----~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~i-g~~ 573 (1343)
.++|++|++.++. .|++||+.++. ..+.. +..++++..++ .... +..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI-----------DERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCC
Confidence 2799999999886 59999998742 12221 22222332222 2222 456
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCcccc-CCEEEEEeCC
Q 000702 574 GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLPA-ADFILVLKEG 651 (1343)
Q Consensus 574 g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G 651 (1343)
..+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 78899999999999999999999999999999999999887765 444443 58999999999999875 9999999999
Q ss_pred eEEEecChHHHHh
Q 000702 652 RIIQAGKYDDLLQ 664 (1343)
Q Consensus 652 ~i~~~g~~~~l~~ 664 (1343)
++++.|+++++..
T Consensus 229 ~i~~~~~~~~~~~ 241 (257)
T PRK10619 229 KIEEEGAPEQLFG 241 (257)
T ss_pred EEEEeCCHHHhhh
Confidence 9999999988764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=334.01 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=170.8
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 515 (1343)
..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 4699999999984 3679999999999999999999999999999999999996 5899998876
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC----CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP----MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.++|++|++.++..|++|||.++.. .++ ++..++++.+++.+++ .+..+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 2799999999998999999988632 111 2233444555543332 234567788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999877765 4555556799999999999875 59999999999999999999
Q ss_pred HHHh
Q 000702 661 DLLQ 664 (1343)
Q Consensus 661 ~l~~ 664 (1343)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14237 248 NIFT 251 (267)
T ss_pred HHhc
Confidence 8864
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=334.38 Aligned_cols=202 Identities=29% Similarity=0.469 Sum_probs=167.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|+++.|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 5899999999852 246799999999999999999999999999999999999999999999887 27
Q ss_pred EEEcccc--cccCccHHHHhccCCC---CCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSA--WIQSGNIEENILFGSP---MDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+| .+++.|++|||.++.. ++.++ ..++++..++.. .......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999988632 23332 233334444432 23456679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
||++.+|+++||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999988877643332233 589999999999887899999999999999999888754
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=301.92 Aligned_cols=212 Identities=26% Similarity=0.419 Sum_probs=184.7
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+.+|++++-.. +.+|+++||+++|||.+||+||||||||||+++|.|-..|++|++.++|+++++.+..++-++-++
T Consensus 2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 678899887654 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccc-cCCchhhhcC----CCC---CCCHHH--HHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1177 IPQDPNL-FEGTIRCNLD----PLE---EHSDRE--IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1177 VpQdp~l-F~gTIr~NLd----p~~---~~sd~e--i~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
.||+..+ |.=|++|-+. |.+ +..+++ ..++|.++++..+-.+. -..|||||+||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999976 7889998874 332 222344 67889999987664332 1369999999999999
Q ss_pred HHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-ccCEEEEEeCCEEeeecChhHH
Q 000702 1247 ALLK------QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI-DSDLVLVLSDGRVAEFDTPGRL 1318 (1343)
Q Consensus 1247 ALL~------~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~ive~g~p~eL 1318 (1343)
.|.+ ++++|+||||||+||..-...+.++.|+.. .++.|++|=|+|+... .||||++|.+|||+..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9985 346999999999999999999999999865 4689999999999875 5999999999999999999999
Q ss_pred hhc
Q 000702 1319 LED 1321 (1343)
Q Consensus 1319 l~~ 1321 (1343)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 964
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=334.90 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=167.4
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 515 (1343)
..++++|++++|. ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 3689999999984 3579999999999999999999999999999999999864 6899998875
Q ss_pred ------eEEEEcccccccCccHHHHhccCCCC----CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSPM----DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.++|++|++.+++.|++||+.++... .. ++..++++.+++..++ ....+..+.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHH
Confidence 37999999999999999999876321 11 1122233333332111 123456788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999887754 4555555789999999999876 59999999999999999998
Q ss_pred HHHhc
Q 000702 661 DLLQA 665 (1343)
Q Consensus 661 ~l~~~ 665 (1343)
++...
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=366.28 Aligned_cols=207 Identities=25% Similarity=0.367 Sum_probs=177.4
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCCh-HHHhhcc
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL-HDLRSRL 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l-~~LR~~i 1174 (1343)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976543 3467889
Q ss_pred eeecCCccccCC-chhhhcCCCC-----C-CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHH
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE-----E-HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1175 ~iVpQdp~lF~g-TIr~NLdp~~-----~-~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1243 (1343)
+|+||+|.+|.+ |+++|+.... . .. .+++.++++.+++.+. ++..+ .+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-------PDTPL----KYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-------cCCch----hhCCHHHHHHHH
Confidence 999999998876 9999997421 1 11 2356777888877432 23333 579999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecCh
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTP 1315 (1343)
Q Consensus 1244 LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p 1315 (1343)
|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998764 36899999999999866 999999999999877654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=322.14 Aligned_cols=194 Identities=27% Similarity=0.355 Sum_probs=167.8
Q ss_pred eEEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhcce
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 3789999999974 359999999999999999999999999999999999999999999999998753 2 2788999
Q ss_pred eecCCcccc-CCchhhhcCCC---CCCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcC
Q 000702 1176 IIPQDPNLF-EGTIRCNLDPL---EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ 1251 (1343)
Q Consensus 1176 iVpQdp~lF-~gTIr~NLdp~---~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~ 1251 (1343)
++||++.++ ..|+++|+... ....++++.++++..++.+.... ++ .+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-------PF----GYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-------Ch----hhcCHHHHHHHHHHHHHhcC
Confidence 999988775 57999998632 12345678899999999764322 22 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCcccccccCEEEEEeC
Q 000702 1252 ARILVLDEATASVDTATDNLIQKIIRTE-FKDCTVCTIAHRIPTVIDSDLVLVLSD 1306 (1343)
Q Consensus 1252 ~~ILlLDEaTs~lD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti~~~DrIlvl~~ 1306 (1343)
|++|||||||++||+.+...+.+.|++. -+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999874 347899999999999988 99988854
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=326.85 Aligned_cols=196 Identities=27% Similarity=0.401 Sum_probs=162.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|+++.|. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 589999999984 35799999999999999999999999999999999999999999999987 37
Q ss_pred EEEcccccccCccHHHHhccCCCC-----CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 518 AYVSQSAWIQSGNIEENILFGSPM-----DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 518 ~~v~Q~~~l~~~ti~~Ni~~g~~~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
+|++|++++++.|++||+.++..+ ++++.+++++.+++. .+.....+.+||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999874221 122223333333331 12345678899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEe-CCeEEEecChH
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLK-EGRIIQAGKYD 660 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 660 (1343)
++|+++||||||++||+.+.+.+.+ ++.... +|+|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999776654 454442 3889999999999988899999995 67777888874
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=335.63 Aligned_cols=203 Identities=24% Similarity=0.376 Sum_probs=169.6
Q ss_pred eEEEEeeEEEecCCC---CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------
Q 000702 451 AIQIENAEFCWYPSS---SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------ 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~---~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 515 (1343)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999985321 35799999999999999999999999999999999999999999999986
Q ss_pred --eEEEEccccc--ccCccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 --TAAYVSQSAW--IQSGNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 --~i~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++|++|+|. ++..|+.||+.|+.. .+. ++.+++++.+++.+. ......+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY-----------RRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHH
Confidence 2689999984 667799999998732 122 234445555555433 334557899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 662 (1343)
++||||++.+|+++||||||++||+.+.+.+.+ ++..+ . .|+|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999888765 45444 2 38999999999998877999999999999999999998
Q ss_pred Hhc
Q 000702 663 LQA 665 (1343)
Q Consensus 663 ~~~ 665 (1343)
...
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=325.05 Aligned_cols=192 Identities=29% Similarity=0.427 Sum_probs=157.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------eEEEEcc
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------TAAYVSQ 522 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~~v~Q 522 (1343)
++++|+++.|+ ++++++|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 46889999884 35799999999999999999999999999999999999999999999987 3899999
Q ss_pred cccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 523 SAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 523 ~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
++.++. .|++||+.++.. ... ++..+.++..++ .........+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL-----------SEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-----------hHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998776 599999987532 111 122233333333 2334456778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999888766533322358999999999998765 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=332.86 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=167.0
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc--C---CCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP--K---ISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g---------- 515 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|..+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 589999999984 3579999999999999999999999999999999999853 6 589999876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCC---C-CHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSP---M-DKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~---~-~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.+++.|++||+.++.. . +++ +..++++.+++...+ .+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 2799999999999999999987531 1 111 122233333332211 1334567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+.+.+++ .+....+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888765 4555555789999999998875 599999999999999999998
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.00 Aligned_cols=191 Identities=28% Similarity=0.418 Sum_probs=156.5
Q ss_pred EEEEeeEEEecCCC-CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 452 IQIENAEFCWYPSS-SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999985321 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEcccccccC-ccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 --TAAYVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 --~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.++|++|++.++. .|++||+.++.. ++.. +..++++.+++ .........+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-----------EHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHH
Confidence 2899999998874 699999987421 2221 22233333333 2334456678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCCeEE
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRII 654 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~ 654 (1343)
+||||++.+|+++||||||++||+++.+.+.+. +..+. .++|+|++||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999998877654 44432 379999999999988889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=333.12 Aligned_cols=204 Identities=25% Similarity=0.416 Sum_probs=168.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcC---ccC--CCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGE---IPK--ISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~---~~~--~~G~i~~~g---------- 515 (1343)
.++++|+++.|. ++++|+|+||++++||+++|+|+||||||||+++|+|+ +++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 588999999984 25799999999999999999999999999999999996 454 589998876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCCC----CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSPM----DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.++..|++||+.++... ++ ++.+++++.+++.+++ .+..+..+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 27999999999989999999875321 11 2233444444443222 1234567889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+ .++...+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999887765 4555556899999999999875 599999999999999999999
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=333.44 Aligned_cols=205 Identities=22% Similarity=0.366 Sum_probs=168.9
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 515 (1343)
..++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4699999999984 2579999999999999999999999999999999999987 5899999876
Q ss_pred ------eEEEEcccccccCccHHHHhccCCCC---CH---HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSPM---DK---AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQ 583 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~~---~~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkq 583 (1343)
.++|++|++.++..|++||+.++... +. ++..++++.+++... ..+.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 27999999999888999999987432 11 222333444433221 223445677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeC-----------C
Q 000702 584 RVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKE-----------G 651 (1343)
Q Consensus 584 Ri~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~-----------G 651 (1343)
|++||||++.+|+++||||||++||+.+.+++.+ .++...+++|+|++||+++.+. .||++++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999888765 4555556789999999999876 4999999996 6
Q ss_pred eEEEecChHHHHhc
Q 000702 652 RIIQAGKYDDLLQA 665 (1343)
Q Consensus 652 ~i~~~g~~~~l~~~ 665 (1343)
++++.|+.+++...
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 78999999888653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=329.88 Aligned_cols=200 Identities=31% Similarity=0.446 Sum_probs=164.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
.++++|++++|. ++++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 378999999984 35799999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEcccccccC-ccHHHHhccCC----CCCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChH
Q 000702 516 ------TAAYVSQSAWIQS-GNIEENILFGS----PMDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGG 580 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~-~ti~~Ni~~g~----~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgG 580 (1343)
.++|++|++.++. .|++||+.++. ..+.+ +..++++.. |..........+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV-----------GLAGKETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCcchhhCChhhCChH
Confidence 3799999998875 79999998742 12221 122222222 2223345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecC
Q 000702 581 QKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 581 QkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 658 (1343)
||||++||||++.+|+++||||||++||+.+.+.+.+. +..+ .+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999998877654 4443 358999999999998865 99999999999999999
Q ss_pred hHHHHhc
Q 000702 659 YDDLLQA 665 (1343)
Q Consensus 659 ~~~l~~~ 665 (1343)
.+++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9988643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=333.22 Aligned_cols=204 Identities=25% Similarity=0.418 Sum_probs=167.8
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 515 (1343)
..++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 3689999999874 35799999999999999999999999999999999999975 799998866
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC---CCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP---MDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.++..|++||+.|+.. .+.+. .+++++.+++..++ .........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 2799999999988999999987632 22222 23333433332211 1234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999887765 45554458999999999998754 99999999999999999998
Q ss_pred HHh
Q 000702 662 LLQ 664 (1343)
Q Consensus 662 l~~ 664 (1343)
+..
T Consensus 240 ~~~ 242 (258)
T PRK14268 240 IFH 242 (258)
T ss_pred Hhc
Confidence 864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=327.40 Aligned_cols=205 Identities=23% Similarity=0.355 Sum_probs=164.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 588999999984 35799999999999999999999999999999999999999999999887 2
Q ss_pred EEEEcccccccC-ccHHHHhccCCCC-CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSPM-DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
++|++|++.++. .|++||+.++... +....++.++. -++.++... ........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW-----VYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHH-----HHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 799999998887 5999999886432 22222211111 111111111 112346678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999988776644332335899999999998765 599999999999999999998864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=324.81 Aligned_cols=190 Identities=25% Similarity=0.409 Sum_probs=157.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC------------eEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------TAAY 519 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~~ 519 (1343)
++++|+++.|. ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 46899999984 247999999999999 9999999999999999999999999999999987 3799
Q ss_pred EcccccccCc-cHHHHhccCCC---CC----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 520 VSQSAWIQSG-NIEENILFGSP---MD----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~~~-ti~~Ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
++|++.++.. |++||+.+... .+ +++.+++++.+++.+. ......+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHHHHHHHH
Confidence 9999988865 99999987421 11 1233444444444322 2245578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEec
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAG 657 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g 657 (1343)
+++|+++||||||++||+.+.+.+.+ .++...+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999887765 4555545799999999999886 49999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=335.09 Aligned_cols=200 Identities=27% Similarity=0.359 Sum_probs=165.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 515 (1343)
.++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 589999999984 35799999999999999999999999999999999999999999999886
Q ss_pred -eEEEEcccccccCc-cHHHHhccCCC----CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 516 -TAAYVSQSAWIQSG-NIEENILFGSP----MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 -~i~~v~Q~~~l~~~-ti~~Ni~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
.++|++|++.++.. |++||+.++.. .+.. +..+.++.+++ .........+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-----------RGAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHH
Confidence 27899999988875 99999987421 2221 12222333332 2223445678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 662 (1343)
+||||++.+|+++||||||++||+.+.+.+.+. +..+. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999998877654 44432 37999999999998765 999999999999999999998
Q ss_pred Hhc
Q 000702 663 LQA 665 (1343)
Q Consensus 663 ~~~ 665 (1343)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=331.68 Aligned_cols=199 Identities=27% Similarity=0.438 Sum_probs=165.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 517 (1343)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 378999999984 35799999999999999999999999999999999999999999999987 28
Q ss_pred EEEcccccccCc-cHHHHhccCCC-----C---CH---HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHH
Q 000702 518 AYVSQSAWIQSG-NIEENILFGSP-----M---DK---AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 518 ~~v~Q~~~l~~~-ti~~Ni~~g~~-----~---~~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi 585 (1343)
+|++|++.++.+ |++||+.++.. + .. ++.+++++.+++. .........||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-----------HLADRRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-----------HHHcCCcccCCHHHHHHH
Confidence 999999987765 99999988631 1 11 1223333333332 223456778999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHH
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 586 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
+||||++.+|+++||||||++||+.+.+.+.+. +..+ .+|+|+|++||+++.+. .||++++|++|+++..|+.+++.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL-MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999998777654 4443 35899999999999876 49999999999999999998875
Q ss_pred h
Q 000702 664 Q 664 (1343)
Q Consensus 664 ~ 664 (1343)
.
T Consensus 227 ~ 227 (255)
T PRK11231 227 T 227 (255)
T ss_pred C
Confidence 4
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=331.12 Aligned_cols=204 Identities=24% Similarity=0.384 Sum_probs=169.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 515 (1343)
.++++|+++.|. ++++|+|+||+|++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 588999999984 35799999999999999999999999999999999999875 799999876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCCC----CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSPM----DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.++..|++||+.|+... +. +++.++++.+++.+++. ...+.+...||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 27999999999999999999876321 11 22334555555433222 224457789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+...+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999887765 45555557999999999998765 99999999999999999998
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 7643
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=330.52 Aligned_cols=203 Identities=26% Similarity=0.392 Sum_probs=167.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccC-----CCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-----ISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 515 (1343)
.++++|+++.|. ++++++|+||+|++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 488999999984 25799999999999999999999999999999999998763 689999876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCCC----CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSPM----DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. ...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 27999999998889999999886321 11 22233333443332221 234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+ ++....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999877754 55555568999999999998765 99999999999999999988
Q ss_pred HHh
Q 000702 662 LLQ 664 (1343)
Q Consensus 662 l~~ 664 (1343)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=330.36 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=167.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCC-----CcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI-----SGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g---------- 515 (1343)
.++++|+++.|. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 588999999984 357999999999999999999999999999999999999987 69998765
Q ss_pred -----eEEEEcccccccCccHHHHhccCCCC----CHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSPM----DKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
.++|++|++.++..|++||+.++..+ .+++ .+++++..++.+. ..+..+..+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHH
Confidence 38999999999999999999986421 1111 2222222232221 12345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999877755 55555568999999999998865 89999999999999999988
Q ss_pred HHh
Q 000702 662 LLQ 664 (1343)
Q Consensus 662 l~~ 664 (1343)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14249 233 IFS 235 (251)
T ss_pred HHh
Confidence 754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=331.90 Aligned_cols=204 Identities=28% Similarity=0.429 Sum_probs=167.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECCe---------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCGT--------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~--------- 516 (1343)
.++++|++|+|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 589999999984 2579999999999999999999999999999999999997 47999988762
Q ss_pred ------EEEEcccccccCccHHHHhccCCCC----CH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHH
Q 000702 517 ------AAYVSQSAWIQSGNIEENILFGSPM----DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQK 582 (1343)
Q Consensus 517 ------i~~v~Q~~~l~~~ti~~Ni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQk 582 (1343)
++|++|++.++..|++||+.++... +. ++..++++.+++..+. ....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 7899999999999999999876321 11 2233344444442211 1223467789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000702 583 QRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 583 qRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 661 (1343)
||++||||++.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999777765 45555567899999999998765 99999999999999999988
Q ss_pred HHhc
Q 000702 662 LLQA 665 (1343)
Q Consensus 662 l~~~ 665 (1343)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=332.20 Aligned_cols=202 Identities=23% Similarity=0.356 Sum_probs=166.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------A 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 517 (1343)
.++++|+++.|.. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 7 ~l~i~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCC-CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5899999999853 2346999999999999999999999999999999999999999999999882 7
Q ss_pred EEEccccc--ccCccHHHHhccCCC---CCHHH----HHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSAW--IQSGNIEENILFGSP---MDKAK----YKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~~--l~~~ti~~Ni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+|+ ++..|+++|+.|+.. ...+. .+++++..++.+ .......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHHH
Confidence 99999985 566789999988732 22222 222333333221 23356678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||++.+|+++||||||++||+.+.+.+++. +.... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999998877654 44433 37999999999998877999999999999999999987653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=331.31 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=165.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 589999999984 357999999999999999999999999999999999999999999999872
Q ss_pred EEEEcccccccC-ccHHHHhccCCC-----------C-----CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCCh
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSP-----------M-----DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSG 579 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~-----------~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSg 579 (1343)
++|++|++.++. .|++||+.++.. + .+.. .+..+ ...+.++.+ |.....+.+..+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEALD--RAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHHH--HHHHHHHhC--ChhhhhhCChhhCCH
Confidence 689999999887 499999998631 0 0000 00000 011112222 334455677889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cC-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEe
Q 000702 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LA-NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQA 656 (1343)
Q Consensus 580 GQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~-~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~ 656 (1343)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +..+ .+ |+|+|++||+++.+.. ||++++|++|++++.
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL-IAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 999999999999999999999999999999998877654 4443 33 7899999999998865 999999999999999
Q ss_pred cChHHHHh
Q 000702 657 GKYDDLLQ 664 (1343)
Q Consensus 657 g~~~~l~~ 664 (1343)
|+.+++..
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99888754
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=308.52 Aligned_cols=162 Identities=28% Similarity=0.437 Sum_probs=145.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--eEEEEcccccccCc
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--TAAYVSQSAWIQSG 529 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~~ 529 (1343)
++++|++++|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++++++.
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 468899999843 25799999999999999999999999999999999999999999999987 79999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000702 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609 (1343)
Q Consensus 530 ti~~Ni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~ 609 (1343)
|++||+.++ ....||||||||++||||++.+|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCCCccccCCEEEEEeCCe
Q 000702 610 HTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGR 652 (1343)
Q Consensus 610 ~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~ 652 (1343)
++.+.+.+ .+... ++|+|++||+++....||++++|++|.
T Consensus 125 ~~~~~l~~-~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQ-LLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHH-HHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99887765 44443 689999999998777799999998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=333.05 Aligned_cols=200 Identities=27% Similarity=0.373 Sum_probs=165.5
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-------------e
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------T 516 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 516 (1343)
..++++|+++.|. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 10 ~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 3689999999984 25799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEccccccc-CccHHHHhccCCC--------CC---HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSP--------MD---KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 517 i~~v~Q~~~l~-~~ti~~Ni~~g~~--------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
++|++|++.++ ..|++||+.++.. .. +++.+++++.+++.+. +.....+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-----------AHRLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCCHHHHHH
Confidence 79999997654 4599999987631 11 1233444555544332 234456899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDD 661 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 661 (1343)
++||||+..+|+++||||||++||+.+.+.+.+. +..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999998877654 44432 3899999999999886 599999999999999999988
Q ss_pred HHh
Q 000702 662 LLQ 664 (1343)
Q Consensus 662 l~~ 664 (1343)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=364.16 Aligned_cols=208 Identities=21% Similarity=0.322 Sum_probs=176.4
Q ss_pred EEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChH-HHhhcceee
Q 000702 1099 LIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLH-DLRSRLGII 1177 (1343)
Q Consensus 1099 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~-~LR~~i~iV 1177 (1343)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++++||
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3699999999999999999999999999999999999999999999999999766543 457789999
Q ss_pred cCCccccC-CchhhhcCCCC----C--CCH----HHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHH
Q 000702 1178 PQDPNLFE-GTIRCNLDPLE----E--HSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1178 pQdp~lF~-gTIr~NLdp~~----~--~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1246 (1343)
||++.+|. .|+++|+.... . .+. +++.++++..++.+.. +.. ..+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-------RAK----VATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-------cCc----hhhCCHHHHHHHHHHH
Confidence 99998775 49999997321 1 122 2355666766664322 222 3579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1247 ALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998753 47899999999998865 9999999999999999998874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=329.14 Aligned_cols=208 Identities=24% Similarity=0.352 Sum_probs=166.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 378999999884 25799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcccccccCc-cHHHHhccCCCCCHHHH------HHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHH
Q 000702 517 AAYVSQSAWIQSG-NIEENILFGSPMDKAKY------KKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589 (1343)
Q Consensus 517 i~~v~Q~~~l~~~-ti~~Ni~~g~~~~~~~~------~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lAR 589 (1343)
++|++|++.++.+ |++||+.++...+...+ ..........+.++.+ |..........+||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 7999999988875 99999988632110000 0000000111222222 3334455677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000702 590 ALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 590 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999887765 45555557999999999999875 99999999999999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=326.92 Aligned_cols=197 Identities=29% Similarity=0.489 Sum_probs=162.9
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------eE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------TA 517 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 517 (1343)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 46899999984 25799999999999999999999999999999999999999999999886 27
Q ss_pred EEEcccccccCc-cHHHHhccCCCC-C---HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 518 AYVSQSAWIQSG-NIEENILFGSPM-D---KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 518 ~~v~Q~~~l~~~-ti~~Ni~~g~~~-~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
+|++|++.++.. |++||+.++... . .+..+++++..+ +..........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999988875 999999876321 1 112233333222 1122344667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 662 (1343)
.+|+++||||||++||+.+.+.+.+. +.... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRV-IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999998877654 44433 37999999999998875 999999999999999999886
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=320.27 Aligned_cols=192 Identities=22% Similarity=0.322 Sum_probs=164.3
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEcCeecCCCChHHHhhccee
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|+.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999975 36999999999999999999999999999999999999999999999999998765 456788999
Q ss_pred ecCCccccC-CchhhhcCCCC---CCCHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHHHHHHHHHhcCC
Q 000702 1177 IPQDPNLFE-GTIRCNLDPLE---EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252 (1343)
Q Consensus 1177 VpQdp~lF~-gTIr~NLdp~~---~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL~~~ 1252 (1343)
+||++.+|. .|+++|+.... ...++++.++++..++.++... .+ .+||+|||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-------PA----AQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-------Ch----hhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 69999995321 1123468889999998766432 22 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCcccccccCEEEE
Q 000702 1253 RILVLDEATASVDTATDNLIQKIIRTE-FKDCTVCTIAHRIPTVIDSDLVLV 1303 (1343)
Q Consensus 1253 ~ILlLDEaTs~lD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti~~~DrIlv 1303 (1343)
++|||||||++||..+.+.+.+.|++. .++.|+|++||+...+ .||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 999999999999999999999999875 3478999999998443 4577765
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=333.18 Aligned_cols=205 Identities=22% Similarity=0.354 Sum_probs=168.2
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG--------- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 515 (1343)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 3699999999984 2579999999999999999999999999999999999987 6999999876
Q ss_pred ------eEEEEcccccccCccHHHHhccCCC---C-CHHHH----HHHHHHhhhhhhHhhccCCCccccCCCCCCCChHH
Q 000702 516 ------TAAYVSQSAWIQSGNIEENILFGSP---M-DKAKY----KKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQ 581 (1343)
Q Consensus 516 ------~i~~v~Q~~~l~~~ti~~Ni~~g~~---~-~~~~~----~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQ 581 (1343)
.++|++|++.++..|++||+.++.. . ++... .+.++..++.++ .....+..+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE-------LKDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------HHHHHhcCcccCCHHH
Confidence 2799999999998999999987532 1 11111 122222222112 2234467788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000702 582 KQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 582 kqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 660 (1343)
|||++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999887765 55555567999999999998764 9999999999999999999
Q ss_pred HHHhc
Q 000702 661 DLLQA 665 (1343)
Q Consensus 661 ~l~~~ 665 (1343)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88643
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=325.50 Aligned_cols=194 Identities=29% Similarity=0.414 Sum_probs=158.9
Q ss_pred eEEEEeeEEEecCCCC-CCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------
Q 000702 451 AIQIENAEFCWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 515 (1343)
.++++|++++|..... .++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999853221 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcccccccC-ccHHHHhccCCC---CC----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 ---TAAYVSQSAWIQS-GNIEENILFGSP---MD----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 ---~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++|++|++.++. .|++||+.++.. .+ .++..++++.+++.+. +.....+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKR-----------LDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHH
Confidence 3799999998876 599999986421 11 1233444444444332 234456899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCcEEEEEecCCCccccCCEEEEEeCCeEEEe
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQA 656 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~-~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~ 656 (1343)
++||||++.+|+++||||||++||+.+.+.+++. +... . .|+|+|++||+++.+..||++++|++|+++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999998777654 4443 2 37899999999998877999999999999753
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=333.56 Aligned_cols=200 Identities=30% Similarity=0.489 Sum_probs=166.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------A 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 517 (1343)
.++++|++++|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4789999999842 246999999999999999999999999999999999999999999999872 7
Q ss_pred EEEcccc--cccCccHHHHhccCCC---CCHH----HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHH
Q 000702 518 AYVSQSA--WIQSGNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588 (1343)
Q Consensus 518 ~~v~Q~~--~l~~~ti~~Ni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lA 588 (1343)
+|++|+| .+++.|++||+.++.. ++++ ++++.++.+++.+. .......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL-----------RDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 9999997 3678899999987532 3332 23344444444332 2345678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 589 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
|||+.+|+++||||||++||+.+.+.+++. +..+. .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999998877654 44432 3899999999999985 599999999999999999999865
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=344.82 Aligned_cols=189 Identities=33% Similarity=0.474 Sum_probs=158.4
Q ss_pred CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------------------eEEEEcccc
Q 000702 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------------------TAAYVSQSA 524 (1343)
Q Consensus 466 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------------~i~~v~Q~~ 524 (1343)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 35689999999999999999999999999999999999999999999986 289999999
Q ss_pred cccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 000702 525 WIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 525 ~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~ 596 (1343)
.+++ .|++||+.++.. .++ ++..++++..+|.+ .......+|||||||||+|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-----------~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-----------WADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9886 799999998743 222 22333444444432 2334566899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 597 illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|+|||||||+||+.+.+.+.+.+..... .++|+|+|||+++.+. .||+|++|++|++++.|++++++..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999998888765543333 3899999999999864 5999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=331.88 Aligned_cols=205 Identities=22% Similarity=0.360 Sum_probs=165.5
Q ss_pred eEEEEeeEEEecCC------CCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC---------
Q 000702 451 AIQIENAEFCWYPS------SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 515 (1343)
.++++|+++.|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999998532 135799999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEccccc--c-cCccHHHHhccCC----CCCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCC
Q 000702 516 -------TAAYVSQSAW--I-QSGNIEENILFGS----PMDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577 (1343)
Q Consensus 516 -------~i~~v~Q~~~--l-~~~ti~~Ni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 577 (1343)
.++|++|+|. + ...|++||+.++. .++. ++..++++..++.. ...+..+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 2899999973 3 3579999996542 1222 12222333332211 2235677889
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEE
Q 000702 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRII 654 (1343)
Q Consensus 578 SgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~ 654 (1343)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +..+. .|+|+|++||+++.+. .||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL-LRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 99999999999999999999999999999999997777654 44443 3899999999999987 49999999999999
Q ss_pred EecChHHHHhcC
Q 000702 655 QAGKYDDLLQAG 666 (1343)
Q Consensus 655 ~~g~~~~l~~~~ 666 (1343)
+.|+++++....
T Consensus 231 ~~g~~~~~~~~~ 242 (265)
T TIGR02769 231 EECDVAQLLSFK 242 (265)
T ss_pred EECCHHHHcCCC
Confidence 999999987643
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=340.59 Aligned_cols=206 Identities=23% Similarity=0.407 Sum_probs=168.2
Q ss_pred ceEEEEeeEEEecCCC----------CCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----
Q 000702 450 VAIQIENAEFCWYPSS----------SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---- 515 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~----------~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 515 (1343)
..++++|++++|.... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 3689999999885321 24699999999999999999999999999999999999999999999877
Q ss_pred ------------eEEEEccccc--cc-CccHHHHhccCC-----CCCHHH----HHHHHHHhhhhhhHhhccCCCccccC
Q 000702 516 ------------TAAYVSQSAW--IQ-SGNIEENILFGS-----PMDKAK----YKKVIHACSLKKDLELFSHGDQTIIG 571 (1343)
Q Consensus 516 ------------~i~~v~Q~~~--l~-~~ti~~Ni~~g~-----~~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig 571 (1343)
.++||+|+|. ++ ..||.|||.++. ..+.++ ..++++..++.. ....
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhc
Confidence 3899999983 54 689999997531 233222 223333333321 1234
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEE
Q 000702 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVL 648 (1343)
Q Consensus 572 ~~g~~LSgGQkqRi~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l 648 (1343)
.....|||||||||+|||||+.+|+++|+||||++||+.+...+++. ++.+. .|.|+|+|||+++.+.. ||+|++|
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 56778999999999999999999999999999999999998888764 44432 38999999999999875 9999999
Q ss_pred eCCeEEEecChHHHHhcC
Q 000702 649 KEGRIIQAGKYDDLLQAG 666 (1343)
Q Consensus 649 ~~G~i~~~g~~~~l~~~~ 666 (1343)
++|++++.|+.+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999988653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=307.25 Aligned_cols=207 Identities=31% Similarity=0.470 Sum_probs=172.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|++..|. ...+|++|||++++||+++++|+||+|||||+++|+|..++.+|+|.++|.
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 478899998763 367999999999999999999999999999999999999999999999983
Q ss_pred EEEEccccccc-CccHHHHhccCCCCCHH-HHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSPMDKA-KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594 (1343)
Q Consensus 517 i~~v~Q~~~l~-~~ti~~Ni~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~ 594 (1343)
++||||.-.+| +.||+||+..|....+. +..+ ..+++-++.+|. +....+.++.+|||||+|-+||||||.++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 79999998887 57999999988543221 1111 012333445553 34456688999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEecCCCc-cccCCEEEEEeCCeEEEecChHHHHhc
Q 000702 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 595 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~t~i~vtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
|++|+||||+.+|-|...++|++.+.....+ |.|+++|.++..+ ++.|||.++|++|+|+.+|+.+|+..+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999998764333323 6799999999987 466999999999999999999999765
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=328.99 Aligned_cols=199 Identities=31% Similarity=0.436 Sum_probs=165.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------A 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 517 (1343)
.++++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 378999999884 357999999999999999999999999999999999999999999999873 7
Q ss_pred EEEcccccc-cCccHHHHhccCCC-C--C----HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHH
Q 000702 518 AYVSQSAWI-QSGNIEENILFGSP-M--D----KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLAR 589 (1343)
Q Consensus 518 ~~v~Q~~~l-~~~ti~~Ni~~g~~-~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lAR 589 (1343)
+|++|++.+ +..|++||+.++.. . + +++.+++++..++.. .......+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHH
Confidence 999999877 67899999988642 1 1 122333344333322 234566789999999999999
Q ss_pred Hhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000702 590 ALY------QDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYD 660 (1343)
Q Consensus 590 al~------~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 660 (1343)
|++ .+|+++||||||++||+.+.+.+.+ ++..+. +|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999887765 444443 5899999999999886 59999999999999999998
Q ss_pred HHHh
Q 000702 661 DLLQ 664 (1343)
Q Consensus 661 ~l~~ 664 (1343)
++..
T Consensus 227 ~~~~ 230 (258)
T PRK13548 227 EVLT 230 (258)
T ss_pred HHhC
Confidence 8764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=326.35 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=165.1
Q ss_pred EEEEEEEEEEcC----C-CCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCcceEEEc--C--eecCCCCh
Q 000702 1097 IELIDLKVRYGE----N-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID--N--IDISTIGL 1167 (1343)
Q Consensus 1097 I~f~nvs~~Y~~----~-~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~~~G~I~Id--G--~di~~i~l 1167 (1343)
|+++|++++|+. + ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+| | +++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---H-hhcceeecCCccccCC-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCC
Q 000702 1168 HD---L-RSRLGIIPQDPNLFEG-TIRCNLDPL---EEH----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWS 1235 (1343)
Q Consensus 1168 ~~---L-R~~i~iVpQdp~lF~g-TIr~NLdp~---~~~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1235 (1343)
.. + +++++|+||+|.+|.. |+++|+... ... .++++.++++..++.+... +. .+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL----PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC----CcccCC
Confidence 43 3 4579999999988875 999998531 111 1345677788888754332 11 235799
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCccccc-ccCEEEEEe
Q 000702 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVI-DSDLVLVLS 1305 (1343)
Q Consensus 1236 gGQrQrl~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~ 1305 (1343)
+|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+. -||||+.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999999999999999999999999998864 3789999999999886 599998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=364.11 Aligned_cols=211 Identities=27% Similarity=0.370 Sum_probs=179.4
Q ss_pred EEEEEEEEEEcCCCCcccccceeEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CcceEEEcCeecCCCChHH-Hhhc
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP--ACGRIIIDNIDISTIGLHD-LRSR 1173 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGsGKSTLl~~L~rl~~~--~~G~I~IdG~di~~i~l~~-LR~~ 1173 (1343)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3599999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred ceeecCCccccCC-chhhhcCCCCC-------CC----HHHHHHHHHHcCCchHHhcccCCCCcccccCCCCCChhHHHH
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPLEE-------HS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL 1241 (1343)
Q Consensus 1174 i~iVpQdp~lF~g-TIr~NLdp~~~-------~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1241 (1343)
++||||+|.+|.. |+++|+..... .. ++++.++++..++.+.. .+.++ ..||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRPV----GDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCch----hhCCHHHHHH
Confidence 9999999988875 99999864211 11 23466777777764321 12223 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCcccccc-cCEEEEEeCCEEeeecChhHHh
Q 000702 1242 VSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLL 1319 (1343)
Q Consensus 1242 l~LARALL~~~~ILlLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ive~g~p~eLl 1319 (1343)
++|||||+++|+||||||||++||+++...+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999998753 46899999999999876 9999999999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=347.42 Aligned_cols=187 Identities=28% Similarity=0.445 Sum_probs=156.6
Q ss_pred CccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC-----------------eEEEEcccccccC-c
Q 000702 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------------TAAYVSQSAWIQS-G 529 (1343)
Q Consensus 468 ~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~~v~Q~~~l~~-~ 529 (1343)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999976 3899999998875 6
Q ss_pred cHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 000702 530 NIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDD 602 (1343)
Q Consensus 530 ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~~~~~illLDe 602 (1343)
|++||+.|+.. ++. ++..++++.++|.+ .......+||||||||++|||||+.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-----------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLEN-----------YAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998642 222 22333444444432 2334567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000702 603 PFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 603 p~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
||++||+.+.+.+.+.+..... .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999998887665433222 4899999999999875 5999999999999999999998764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=328.91 Aligned_cols=203 Identities=23% Similarity=0.382 Sum_probs=165.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------T 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 516 (1343)
.++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 478999999984 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcccccccC-ccHHHHhccCCCC----CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHh
Q 000702 517 AAYVSQSAWIQS-GNIEENILFGSPM----DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 517 i~~v~Q~~~l~~-~ti~~Ni~~g~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal 591 (1343)
++|++|++.++. .|++||+.++... +.+..++.+ .+.++.+ |..........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRA-----NELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHH-----HHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 799999998776 5999999876321 221111111 1122222 233345567789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQ 664 (1343)
Q Consensus 592 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 664 (1343)
+.+|+++||||||++||+.+.+.+.+. +... .+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRI-IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999998777654 4443 35899999999998775 599999999999999999988764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=321.60 Aligned_cols=189 Identities=30% Similarity=0.441 Sum_probs=155.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 520 (1343)
|+++|++++|.. +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999842 22 3999999999999999999999999999999999999999999883 7999
Q ss_pred cccccccC-ccHHHHhccCCCC-------CHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 000702 521 SQSAWIQS-GNIEENILFGSPM-------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 521 ~Q~~~l~~-~ti~~Ni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~lARal~ 592 (1343)
+|++.++. .|++||+.++... ++++..++++.+++.+.. .....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-----------KRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99999886 4999999876421 122344455555443322 3345689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657 (1343)
Q Consensus 593 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g 657 (1343)
.+|+++||||||++||+.+.+.+.+. +..+. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999998877654 44432 38999999999998865 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=324.75 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=154.6
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT--------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 516 (1343)
++++|+++.|+. .+++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 368899999842 257999999999999999999999999999999999999999999998762
Q ss_pred -EEEEcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 517 -AAYVSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 517 -i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
++|++|++.++. .|++||+.++.. .+. ++..+.++.+++... ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 799999998876 599999987632 122 223334444444322 234556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGRI 653 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i 653 (1343)
|||++.+|+++||||||++||+++.+.+.+. +..+ .+++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNL-LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998877654 4443 358999999999998875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=330.81 Aligned_cols=204 Identities=22% Similarity=0.390 Sum_probs=169.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCcc-----CCCcEEEECC----------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP-----KISGEVRLCG---------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------- 515 (1343)
.++++|++++|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 589999999984 2479999999999999999999999999999999999976 3799999876
Q ss_pred -----eEEEEcccccccCccHHHHhccCCCC---C---HHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHH
Q 000702 516 -----TAAYVSQSAWIQSGNIEENILFGSPM---D---KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQR 584 (1343)
Q Consensus 516 -----~i~~v~Q~~~l~~~ti~~Ni~~g~~~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqR 584 (1343)
.++|++|++.+++.|++||+.++... . +++..++++.+++..++. ...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 27999999999888999999886431 1 123334445555543332 12456788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEecCCCcccc-CCEEEEEe---------CCeEE
Q 000702 585 VQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLK---------EGRII 654 (1343)
Q Consensus 585 i~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~---------~G~i~ 654 (1343)
++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999887754 45555557899999999998765 99999998 89999
Q ss_pred EecChHHHHhc
Q 000702 655 QAGKYDDLLQA 665 (1343)
Q Consensus 655 ~~g~~~~l~~~ 665 (1343)
+.|+.+++...
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=327.79 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=163.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|+++.|. ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 478999999984 257999999999999999999999999999999999999999999998762
Q ss_pred -----EEEEcccccccC-ccHHHHhccCC----CCCHHHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHH
Q 000702 517 -----AAYVSQSAWIQS-GNIEENILFGS----PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 517 -----i~~v~Q~~~l~~-~ti~~Ni~~g~----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~ 586 (1343)
++|++|++.++. .|++|||.++. ........+. ..+.++.+ |....+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR-----AEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 799999998876 59999997431 1111111110 11112222 3333455667799999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
||||++.+|+++||||||++||+.+.+.+.+ +++... +|+|+|++||+++.+.. ||++++|++|+++++|+++++.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 9999999999999999999999999887765 454443 58999999999999865 9999999999999999988764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.50 Aligned_cols=187 Identities=24% Similarity=0.407 Sum_probs=154.3
Q ss_pred EEEEeeEEEecCCCCCCccccceeEecCCeEEEEEcCCCCCHHHHHHHHhcCccCCCcEEEECC----------------
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG---------------- 515 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 515 (1343)
++++|+++.|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999842 35799999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccccC-ccHHHHhccCCC---CCH----HHHHHHHHHhhhhhhHhhccCCCccccCCCCCCCChHHHHHHHH
Q 000702 516 TAAYVSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587 (1343)
Q Consensus 516 ~i~~v~Q~~~l~~-~ti~~Ni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSgGQkqRi~l 587 (1343)
.++|++|+|.++. .|++||+.++.. .+. ++.++.++..++.+. ......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHH
Confidence 3799999998875 799999987522 221 233444444444322 223456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000702 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLPA-ADFILVLKEGR 652 (1343)
Q Consensus 588 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~ 652 (1343)
|||++.+|+++||||||++||+.+...+.+. +... .+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDL-LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999998877654 4443 358999999999998875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1343 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-58 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-56 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-22 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-47 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-47 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-06 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-44 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-44 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-44 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-44 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 7e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-44 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-43 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-43 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-43 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-43 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-42 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-05 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-41 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-38 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-35 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-35 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 9e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-32 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-32 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-31 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-30 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-29 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-29 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-26 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-26 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-23 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-23 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-23 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-23 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-22 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-22 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-22 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-21 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-20 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-19 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-19 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-17 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-13 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-11 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-04 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-08 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 6e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 6e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-07 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 7e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 6e-06 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 4e-05 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 8e-05 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1343 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-150 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-25 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-138 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-28 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-130 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 6e-28 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-129 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-120 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-65 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-44 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-80 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-56 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-79 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-56 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-78 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 7e-49 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 5e-70 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-36 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-67 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-44 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 6e-66 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-45 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-60 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-36 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-60 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-40 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-60 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-35 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-57 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-36 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-49 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 9e-37 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-31 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 8e-30 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-22 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-29 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-21 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-28 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-23 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-25 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-17 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-24 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-24 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-15 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-23 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-21 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-20 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 7e-08 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-19 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-19 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 9e-19 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-15 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 9e-19 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 9e-10 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-18 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-14 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-18 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-06 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-18 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-10 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-18 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-08 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-17 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-12 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-16 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 9e-07 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-13 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-12 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-12 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-09 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-12 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-12 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 8e-11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-10 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-07 | |
| 3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated | 1e-05 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 458 bits (1179), Expect = e-150
Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 3/260 (1%)
Query: 1081 VIEDS--RPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKS 1138
+IE+S + WP G + + DL +Y E +L I+ + G+++G++GRTGSGKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1139 TLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH 1198
TL+ A RL+ G I ID + +I L R G+IPQ +F GT R NLDP H
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1199 SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
SD+EIW+ D+ L ++ KL+ +++ G S G +QL+ L R++L +A+IL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1259 EATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRL 1318
E +A +D T +I++ ++ F DCTV RI +++ D LV+ + +V ++D+ L
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1319 LEDKSSMFLKLVTEYSSRSS 1338
+ F+ +
Sbjct: 241 YHYPADRFVAGFIGSPKMNF 260
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-25
Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 20/265 (7%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
+ +++ + + L IS + G RV + G GSGKS+LLS L + GE
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGE 76
Query: 511 VRLCGTA-------------AYVSQSAWIQSGNIEENI-LFGSPMDKAKYKKVIHACSLK 556
+++ G + + Q +I SG +N+ + D+ +K V L+
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWK-VADEVGLR 135
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
+E F ++ D G LS G KQ + LAR++ A I LLD+P + +D T ++
Sbjct: 136 SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQII 194
Query: 617 KEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD-FNALVSA 675
+ + A A+ TVI ++E + D LV++E ++ Q +L D F A
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIG 254
Query: 676 HHEAIEAMDIPNHSSEDSDENLTLD 700
+ + + ++ + L
Sbjct: 255 SPKM-NFLPVKVTATAIDQVQVELP 278
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 422 bits (1087), Expect = e-138
Identities = 93/279 (33%), Positives = 154/279 (55%), Gaps = 2/279 (0%)
Query: 417 AQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMK 476
+ T+V ++ ++ F +E + + ++ F + P L I+ K
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENIL 536
++RG +AV G G+GK+SLL I+GE+ G+++ G ++ SQ++WI G I+ENI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 537 FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596
G D+ +Y+ VI AC L++D+ F+ D ++G+ GI LSGGQ+ R+ LARA+Y+DAD
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQA 656
+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+L EG
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 657 GKYDDLLQAGTDFNALVSAHHEAIEAMDIPNHSSEDSDE 695
G + +L DF++ + + +S ++
Sbjct: 240 GTFSELQNLRPDFSSKLMGCDSF-DQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 32/281 (11%)
Query: 1063 ISIERIYQY--SQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCA 1120
+ +E + + +++ + + ++ + + VL I
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFK 60
Query: 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQD 1180
G+ + + G TG+GK++L+ + +EP+ G+I R+ Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQN 107
Query: 1181 PNLFEGTIRCNL--DPLEEHSDREIWEALDKSQLG---DIVRGKDQKLETPVLENGDNWS 1235
+ GTI+ N+ +E+ + QL KD + E G S
Sbjct: 108 SWIMPGTIKENIIGVSYDEY---RYRSVIKACQLEEDISKFAEKDN---IVLGEGGITLS 161
Query: 1236 VGQRQLVSLGRALLKQARILVLDEATASVDTAT-DNLIQKIIRTEFKDCTVCTIAHRIPT 1294
GQR +SL RA+ K A + +LD +D T + + + + T + ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 1295 VIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335
+ +D +L+L +G + T L + F + S
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQNLRPD-FSSKLMGCDS 261
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 398 bits (1026), Expect = e-130
Identities = 92/229 (40%), Positives = 140/229 (61%), Gaps = 1/229 (0%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
+T + +EN W + P L I+ K++RG +AV G G+GK+SLL I+GE+
Sbjct: 2 LTTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 507 ISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGD 566
G+++ G ++ SQ +WI G I+ENI+FG D+ +Y+ VI AC L++D+ F+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
++G+ GI LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T E+F+ + +AN
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 627 KTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
KT I VT ++E L AD IL+L EG G + +L DF++ +
Sbjct: 181 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 26/244 (10%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
+ + ++ + E VL I G+ + + G TG+GK++L+ + +EP+ G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKS 1210
+I R+ Q + GTI+ N+ +E+ +
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSYDEY---RYRSVIKAC 107
Query: 1211 QLG---DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
QL KD + E G S GQR +SL RA+ K A + +LD +D
Sbjct: 108 QLEEDISKFAEKDN---IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 1268 T-DNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
T + + + + T + ++ + +D +L+L +G + T L +
Sbjct: 165 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
Query: 1327 LKLV 1330
KL+
Sbjct: 225 SKLM 228
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 397 bits (1022), Expect = e-129
Identities = 112/233 (48%), Positives = 148/233 (63%), Gaps = 3/233 (1%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
+I + NA F W S PTL+GI+ + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 3 SITVRNATFTWARSDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 511 VRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTII 570
V + G+ AYV Q AWIQ+ ++ ENILFG +++ Y+ VI AC+L DLE+ GD+T I
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--MTALANKT 628
G++G+NLSGGQKQRV LARA+Y +ADIYL DDP SAVDAH G +F+ I L NKT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 629 VIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIE 681
I VTH + +LP D I+V+ G+I + G Y +LL F + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 29/253 (11%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
+I + + + + P L+GIT + P G + +VG+ G GKS+L+ AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQ 1211
+ I + + +PQ + ++R N+ LEE +
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEP---YYRSVIQACA 105
Query: 1212 LG---DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
L +I+ D+ T + E G N S GQ+Q VSL RA+ A I + D+ ++VD
Sbjct: 106 LLPDLEILPSGDR---TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 1269 -DNLIQKII--RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
++ + +I + K+ T + H + + D+++V+S G+++E + LL +
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA- 221
Query: 1326 FLKLVTEYSSRSS 1338
F + + Y+S
Sbjct: 222 FAEFLRTYASHHH 234
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 405 bits (1042), Expect = e-120
Identities = 247/1179 (20%), Positives = 464/1179 (39%), Gaps = 127/1179 (10%)
Query: 222 LSSLAKQ------SHTSGEIVNYMAVDVQRVGD-YSWYLHDIWMLPLQIILALAI-LYKN 273
++ Q H GE+ + DV ++ + + + I +
Sbjct: 148 FHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRG 207
Query: 274 VGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILK---LQ 330
+ V I+ ++ + + AK+ + DK + A + E L +R + Q
Sbjct: 208 WKLTLVILAISPVLGLSAGI-WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ 266
Query: 331 AWE-DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTA 389
E +RY LEE + + + A S + ++S + A +GTS+++ + +
Sbjct: 267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS--YALAFWYGTSLVISKEYSI 324
Query: 390 GSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTN 449
G VL+ + I + + A + + + + + + D+ N
Sbjct: 325 GQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII-DNKPSIDSFSKSGHKPDN 383
Query: 450 VA--IQIENAEFCWYPS-SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
+ ++ +N F YPS L G+++KV G VA+ G G GKS+ + +
Sbjct: 384 IQGNLEFKNIHFS-YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 507 ISGEVRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC 553
+ G V + G VSQ + + I ENI +G ++ A
Sbjct: 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAV 500
Query: 554 SLK------KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV 607
L H T++G+RG LSGGQKQR+ +ARAL ++ I LLD+ SA+
Sbjct: 501 KEANAYDFIMKLP---HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 608 DAHTGSE-LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
D SE + + + A +T I + H++ + AD I G I++ G +D+L++
Sbjct: 558 DTE--SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK 615
Query: 667 TDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLDGCVIPCKKCDASGDNIDNLAKEVQDG 726
+ LV A +++ N + + DE LD + D
Sbjct: 616 GIYFKLVMTQ-TAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQ 674
Query: 727 SSASEQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPL--IILA 784
K ++ S + L ++ + A G L P +I +
Sbjct: 675 DRKLSTKEALDEDVPPASFWRIL-----KLNSTEWPYFVVGIFCAIINGGLQPAFSVIFS 729
Query: 785 QVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFG 844
+V+ F + + N + ++++ L S F++ G
Sbjct: 730 KVVGVF------------TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAG 777
Query: 845 LAAAQKLFVKMLRSVFRAPMSFFDST--PAGRILNRVSIDQSVVDLDIPFRLGGFASTTI 902
++L + +S+ R +S+FD G + R++ D + V RL
Sbjct: 778 EILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIA 837
Query: 903 QLVGIIGVMTMVTWQ---VLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFG 959
L I + + WQ +LL ++P+ ++ ++ + I
Sbjct: 838 NLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT--- 894
Query: 960 ESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAF--- 1016
E+I T+ +E++F + SL ++ + F+F
Sbjct: 895 EAIENFRTVVSLTREQKFETM-----------YAQSLQIPYRNAMKKAHVFGITFSFTQA 943
Query: 1017 ----CMVL-------LVSFPHGAIDPS---MAGLAVTYGLNLNARLSRWILSFCKLENKI 1062
LV+ + + A+ +G ++S + + K
Sbjct: 944 MMYFSYAAAFRFGAYLVT--QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSA 1001
Query: 1063 ISIERIYQYSQIPGEAPPVIEDSRPPSSWPEN--GTIELIDLKVRYGENLP-----LVLH 1115
I RI E P I+ P G ++ + Y P VL
Sbjct: 1002 SHIIRII-------EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNY----PTRPSIPVLQ 1050
Query: 1116 GITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175
G++ G+ + +VG +G GKST++Q L R +P G + +D +I + + LR++LG
Sbjct: 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 1176 IIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
I+ Q+P LF+ +I N+ D S EI A ++ + + K T V + G
Sbjct: 1111 IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
S GQ+Q +++ RAL++Q IL+LDEAT+++DT ++ ++Q+ + + T IAHR+
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
Query: 1293 PTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331
T+ ++DL++V+ +G+V E T +LL + ++ +V+
Sbjct: 1231 STIQNADLIVVIQNGKVKEHGTHQQLLA-QKGIYFSMVS 1268
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 2e-65
Identities = 129/640 (20%), Positives = 252/640 (39%), Gaps = 59/640 (9%)
Query: 731 EQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYM-------------AAAYRGLL 777
E+ K K+ +E++ + VS+ Y AA G+
Sbjct: 4 EEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVA 63
Query: 778 IPL--IILAQVL------FQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGS 829
+PL +I + + ++N A + ++ + G
Sbjct: 64 LPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTG--IGAGV 121
Query: 830 SWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLD 889
+++ K+ K ++ + +FD G + R++ D S ++
Sbjct: 122 LIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEG 181
Query: 890 IPFRLGGFASTTIQLVGIIGVMTMVTWQ---VLLLVIPMAVACLWMQKYYMASSRELVRI 946
I ++G F G + W+ V+L + P+ + ++S +
Sbjct: 182 IGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELH 241
Query: 947 VSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKR-NLYLLDCFARPFFCSLA-----AIE 1000
+ + E +A T+ FG +K+ ++R N L + ++
Sbjct: 242 AYAKAGAVAE---EVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAA 298
Query: 1001 WLCLRMELLSTFVFAFCM-VLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLE 1059
+L + +++ AF LV L + + +
Sbjct: 299 FLL----IYASYALAFWYGTSLVI--SKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352
Query: 1060 NKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPEN--GTIELIDLKVRYGENLP-----L 1112
N + +++ I + P I+ P+N G +E ++ Y P
Sbjct: 353 NARGAAYEVFKI--I--DNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSY----PSRKEVQ 404
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+L G+ G+ + +VG +G GKST +Q + RL +P G + ID DI TI + LR
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 1173 RLGIIPQDPNLFEGTIRCNLDP-LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
+G++ Q+P LF TI N+ E+ + EI +A+ ++ D + + +T V E G
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
S GQ+Q +++ RAL++ +IL+LDEAT+++DT ++ ++Q + + T IAHR
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331
+ TV ++D++ G + E L+ + ++ KLV
Sbjct: 585 LSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVM 623
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 3e-44
Identities = 138/633 (21%), Positives = 249/633 (39%), Gaps = 100/633 (15%)
Query: 109 SNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVD---YL 165
S E L + P + L + + W + A +N + + S V
Sbjct: 679 STKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738
Query: 166 GGKETFPHEGYILAGIFFSAKLVETITT-RQWYLGVDILGMHVRSALTAMVYRKGLK--L 222
G ET + + +F ++ IT Q + G + L MV++ L+ +
Sbjct: 739 GPPETQRQNSNLFSLLFLILGIISFITFFLQGFT-FGKAGEILTKRLRYMVFKSMLRQDV 797
Query: 223 SSLAKQSHTSGEIVNYMAVDVQRV----GDYSWYLHDIWMLPLQIILALAILYKNVGIAS 278
S +T+G + +A D +V G LA++++N+
Sbjct: 798 SWFDDPKNTTGALTTRLANDAAQVKGATGS-----------------RLAVIFQNIANLG 840
Query: 279 VATLIATIIS------IVVTVPVAKVQEEYQDKLMAAKDERMRK--------TSECLRNM 324
+I+ I ++ VP+ + + K+++ + + +K +E + N
Sbjct: 841 TGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENF 900
Query: 325 RILKL----QAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTF--G 378
R + Q +E Y L+ + + +F + F A F G
Sbjct: 901 RTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAM----MYFSYAAAFRFG 956
Query: 379 TSILLGAQLTAGS---VLSAMA-TFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE- 433
++ +T + V SA+ + + PD A+ VS I +++
Sbjct: 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD----YAKATVSASHIIRIIEKTP 1012
Query: 434 ELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPT---LSGISMKVDRGMRVAVCGMVG 490
E+ +T L M +Q F YP+ RP+ L G+S++V +G +A+ G G
Sbjct: 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFN-YPT--RPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 491 SGKSSLLSCILGEIPKISGEVRLCGTA-------------AYVSQSAWIQSGNIEENILF 537
GKS+++ + ++G V L G VSQ + +I ENI +
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 538 GSPMDKAKYKKVIHAC----------SLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G Y++++ A SL T +GD+G LSGGQKQR+ +
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLP-------DKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSE-LFKEYIMTALANKTVIFVTHQVEFLPAADFIL 646
ARAL + I LLD+ SA+D SE + +E + A +T I + H++ + AD I+
Sbjct: 1183 ARALVRQPHILLLDEATSALDTE--SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240
Query: 647 VLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEA 679
V++ G++ + G + LL + ++VS A
Sbjct: 1241 VIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 1e-80
Identities = 120/574 (20%), Positives = 243/574 (42%), Gaps = 30/574 (5%)
Query: 751 QEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWA--NPQTEG 808
++ + + + +A ++ LI + +A +L + + +
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAP-FKAGLI-VAGIALILNAASDTFMLSLLKPLLDDGFGKT 59
Query: 809 DQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFD 868
D+ + M L+V+ L ++ + ++ + ++ + P++FFD
Sbjct: 60 DRSVLLWMPLVVI--GLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD 117
Query: 869 STPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQ---VLLLVIPM 925
G +L+R++ D V L ++G+ +M +WQ +L+++ P+
Sbjct: 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177
Query: 926 AVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEK----RFMKRN 981
+ R + + + + + + G + FG ++ RF K +
Sbjct: 178 VS---IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 982 LYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFP--HGAIDPSMAGLAVT 1039
+ + ++A ++L+++ AF ++ SFP ++ + +
Sbjct: 235 NKMRLQGMK----MVSASSISDPIIQLIASLALAF-VLYAASFPSVMDSLTAGTITVVFS 289
Query: 1040 YGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIEL 1099
+ L L + + + + + ++ I E R G +E
Sbjct: 290 SMIALMRPLKSLTNVNAQFQRGMAACQTLFA---ILDSEQEKDEGKRVID--RATGDLEF 344
Query: 1100 IDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159
++ Y L I P GK + +VGR+GSGKST+ + R + G I++D
Sbjct: 345 RNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 1160 IDISTIGLHDLRSRLGIIPQDPNLFEGTIRCN--LDPLEEHSDREIWEALDKSQLGDIVR 1217
D+ L LR+++ ++ Q+ +LF T+ N EE+S +I EA + D +
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
D L+T + ENG S GQRQ +++ RALL+ + IL+LDEAT+++DT ++ IQ +
Sbjct: 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 1278 TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
K+ T IAHR+ T+ +D ++V+ DG + E
Sbjct: 525 ELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 2e-56
Identities = 115/574 (20%), Positives = 236/574 (41%), Gaps = 55/574 (9%)
Query: 127 LAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAK 186
+ F + + LN L+ +D GK ++ +
Sbjct: 17 WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM- 75
Query: 187 LVETITT--RQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQ 244
++ IT+ + + + V + ++ + + ++G +++ + D +
Sbjct: 76 ILRGITSYISSYCISW--VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE 133
Query: 245 RVGD-YSWYLHDIWMLPLQIILALAI-LYKNVGIASVATLIATIISIVVTVPVAKVQE-- 300
+V S L + II + Y + ++ + ++A I+SI + V + +
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 301 -EYQDKLMAAKDERMRKTSECLRNMRILKL---QAWE-DRYRIQLEEMRGVEFRWLRKAL 355
Q+ + + + L+ + + + Q E R+ +MR + + +
Sbjct: 194 KNMQNTM----GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249
Query: 356 YSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSM 415
S I I + FV + + + LTAG++ ++ L PL++ ++ +
Sbjct: 250 ISDPIIQLIASLALAFV--LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 416 MAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISM 475
+ + + L E+ +++ V+ R ++ N F YP P L I++
Sbjct: 308 FQRGMAACQTLFAILDSEQEKDEGKRVIDR--ATGDLEFRNVTFT-YPGREVPALRNINL 364
Query: 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------------AYVSQ 522
K+ G VA+ G GSGKS++ S I G + + G A VSQ
Sbjct: 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 523 SAWIQSGNIEENILFGSPMDKAKYKKVIHACSLK------KDLELFSHGDQTIIGDRGIN 576
+ + + + NI + ++ +++ A + ++ +G TIIG+ G+
Sbjct: 425 NVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMD---NGLDTIIGENGVL 480
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL----ANKTVIFV 632
LSGGQ+QR+ +ARAL +D+ I +LD+ SA+D SE I AL N+T + +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTE--SE---RAIQAALDELQKNRTSLVI 535
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
H++ + AD I+V+++G I++ G + +LL
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 2e-79
Identities = 113/567 (19%), Positives = 236/567 (41%), Gaps = 33/567 (5%)
Query: 761 SMKVY---LSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWA--NPQTEGDQPKVNP 815
+ + + +Y+ Y+ L+ + +A V+ + + +
Sbjct: 9 NWQTFKRLWTYIRL-YKAGLV-VSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRI 66
Query: 816 MVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRI 875
+ +++ L F F + ++ ++ ++ P+ FFD G +
Sbjct: 67 LPFMIL--GLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGL 124
Query: 876 LNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQ---VLLLVIPMAVACLWM 932
L+R++ D V L ++G++ +M +WQ VL++V P+ +
Sbjct: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVA---FA 181
Query: 933 QKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEK----RFMKRNLYLLDCF 988
+ R++ R + + + + G + +G ++ RF K + +
Sbjct: 182 ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241
Query: 989 ARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFP--HGAIDPSMAGLAVTYGLNLNA 1046
+ ++A ++++++ ++ L S + P + + L
Sbjct: 242 MK----LVSAQSIADPVIQMIASLALFA-VLFLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 1047 RLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRY 1106
L + + + + + ++ + NG +++ D+ Y
Sbjct: 297 PLKALTSVTSEFQRGMAACQTLFG---LMDLETERDNGKYEAE--RVNGEVDVKDVTFTY 351
Query: 1107 GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG 1166
L ++ + P GK + +VGR+GSGKST+ R + G I +D D+
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 1167 LHDLRSRLGIIPQDPNLFEGTIRCN--LDPLEEHSDREIWEALDKSQLGDIVRGKDQKLE 1224
L +LR ++ Q+ +LF TI N E++ +I +A ++ + + Q L+
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 1225 TPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCT 1284
T + ENG + S GQRQ V++ RALL+ A +L+LDEAT+++DT ++ IQ + K+ T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 1285 VCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
V IAHR+ T+ +D +LV+ +G + E
Sbjct: 532 VLVIAHRLSTIEQADEILVVDEGEIIE 558
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 4e-56
Identities = 117/576 (20%), Positives = 231/576 (40%), Gaps = 59/576 (10%)
Query: 127 LAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAK 186
++ + ++ + +N L+ +D G + I
Sbjct: 17 WTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM- 75
Query: 187 LVETITT--RQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQ 244
V ++ + L + +V + ++ + + ++G +++ + D +
Sbjct: 76 FVRGLSGFASSYCLSW--VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE 133
Query: 245 RVGD-YSWYLHDIWMLPLQIILALAI-LYKNVGIASVATLIATIISIVVTVPVAKVQE-- 300
+V S L I II L + + + ++ V ++A +++ ++ + ++
Sbjct: 134 QVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193
Query: 301 -EYQDKLMAAKDERMRKTSECLRNMRILKL---QAWE-DRYRIQLEEMRGVEFRWLRKAL 355
Q + + L+ +++ Q E R+ MR + +
Sbjct: 194 RNMQTAM----GHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249
Query: 356 YSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSM 415
+ I I +S A + + + A+LT G+ + L PL+ + S
Sbjct: 250 IADPVIQMI--ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 416 MAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISM 475
+ + + G + E +++ R N + +++ F Y +P LS +S
Sbjct: 308 FQRGMAACQTLFGLMDLETERDNGKYEAER--VNGEVDVKDVTFT-YQGKEKPALSHVSF 364
Query: 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-------------AYVSQ 522
+ +G VA+ G GSGKS++ + SG + L G A VSQ
Sbjct: 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424
Query: 523 SAWIQSGNIEENILFGSPMDKAKYKKVIHACSLK--------KDLELFSHGDQTIIGDRG 574
+ + + I NI + + + +++ A + +++ G T+IG+ G
Sbjct: 425 NVHLFNDTIANNIAYAAEGE-YTREQIEQA--ARQAHAMEFIENMP---QGLDTVIGENG 478
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA----NKTVI 630
+LSGGQ+QRV +ARAL +DA + +LD+ SA+D T SE I AL NKTV+
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALD--TESE---RAIQAALDELQKNKTVL 533
Query: 631 FVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
+ H++ + AD ILV+ EG II+ G++ DLL
Sbjct: 534 VIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 1e-78
Identities = 123/577 (21%), Positives = 233/577 (40%), Gaps = 50/577 (8%)
Query: 762 MKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWA--NPQTEGDQPKVNPMVLL 819
+K YL ++ Y+ + II+ ++ + + + +A + L
Sbjct: 2 IKRYLQFVKP-YKYRIFATIIVG-IIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 820 VVYMALAFG-----SSWFIFVRAVLVATFGLAAAQKLFVKMLRSVF----RAPMSFFDST 870
+ + +A F+R L K+ + + ++ F+ +
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTS----NKILYDIRKKLYNHLQALSARFYANN 115
Query: 871 PAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQ---VLLLVIPMAV 927
G++++RV D I L I ++ + +M + + L + P +
Sbjct: 116 QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYI 175
Query: 928 ACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEK----RFMKRNLY 983
+ R+L R S + + E + G S ++ F E F K+N
Sbjct: 176 ---LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTN 232
Query: 984 LLDCFARPFFCS--LAAIEWLCLRMELLSTFVFAFCMVL---LVSFPHGAIDPSMAGLAV 1038
L + + A + ++ + + L G+I V
Sbjct: 233 FLTRALKHTRWNAYSFAA------INTVTDIGPIIVIGVGAYLAI--SGSITVGTLAAFV 284
Query: 1039 TYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPE-NGTI 1097
Y L L R + SF L S++R++Q + I++ G I
Sbjct: 285 GYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI----DEDYDIKNGVGAQPIEIKQGRI 340
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
++ + +Y +N +L I + G+ + VG +G GKSTLI + R + G+I+I
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 1158 DNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGD 1214
D +I LR+++G++ QD LF T++ N+ P +D E+ EA + D
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHD 458
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
+ Q +T V E G S GQ+Q +S+ R L IL+LDEAT+++D ++++IQ+
Sbjct: 459 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAE 1311
+ KD T +AHR+ T+ +D ++V+ +G + E
Sbjct: 519 ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 7e-49
Identities = 127/580 (21%), Positives = 240/580 (41%), Gaps = 65/580 (11%)
Query: 130 LKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYL------GGKETFPHEGYILAGIFF 183
+K + + + + + P L+ Y +D + E H + F
Sbjct: 9 VKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALF 68
Query: 184 SAKLVETITTR-QWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVD 242
+V + YL + + +Y LS+ ++ G++++ + D
Sbjct: 69 IFVIVRPPIEFIRQYLA-QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVIND 127
Query: 243 VQRVGD-YSWYLHDIWMLPLQIILALAI-LYKNVGIASVATLIATIISIVVTVPVAKVQE 300
V++ D L +IW+ + II+AL+I + +V + +A L I+
Sbjct: 128 VEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT-LAALFIFPFYILTVYVFFG--- 183
Query: 301 EYQDKLMAAKDERMRKTS-------ECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRK 353
+L ER + + E ++ + ++K A ED + + +L +
Sbjct: 184 ----RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDN---EAKNFDKKNTNFLTR 236
Query: 354 ALYSQAFITFIFWSSPIFVAAVTFGTSILLGA------QLTAGSVLSAMATFRILQEPLR 407
AL +++ V + I +GA +T G++ + + +L PLR
Sbjct: 237 ALKHT-RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLR 295
Query: 408 NFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSR 467
+ + Q+ S+DR+ + E+ ++ P + I I++ F Y +
Sbjct: 296 RLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQ-YNDNEA 354
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-------GEIPKISG----EVRLC-- 514
P L I++ +++G VA GM G GKS+L++ I G+I I G +
Sbjct: 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSL 413
Query: 515 -GTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLELFSHGDQTII 570
V Q + S ++ENIL G P A ++V+ A + + G T +
Sbjct: 414 RNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEV 471
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA----N 626
G+RG+ LSGGQKQR+ +AR + I +LD+ SA+D + E I AL +
Sbjct: 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES--E---SIIQEALDVLSKD 526
Query: 627 KTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
+T + V H++ + AD I+V++ G I++ G + +L+
Sbjct: 527 RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 5e-70
Identities = 150/609 (24%), Positives = 264/609 (43%), Gaps = 81/609 (13%)
Query: 734 AIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYRGLLIPLIILAQVLFQFLQI 793
I EK K +++ L Y+ + LI + + + L +
Sbjct: 11 PILEKPALKNPTA--------------TLRRLLGYLRP-HTFTLIMVFVFV-TVSSILGV 54
Query: 794 ASNWWMAWA--NPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKL 851
S + + + +L++ + +S +++ ++ T Q +
Sbjct: 55 LSPYLIGKTIDVVFVPRRFDLLPRYMLILG--TIYALTSLLFWLQGKIMLTLS----QDV 108
Query: 852 FVKMLRSVF----RAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGI 907
++ + +F R P+ FFD TP G I++RV D ++ + + F S + L G
Sbjct: 109 VFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 908 IGVMTMVTWQ---VLLLVIPMAVACLWM-----QKYYMASSRELVRIVS-IQKSPIIHLF 958
+ +M V V L ++P+ V + +KY+ + R L ++ I+
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIE-------- 220
Query: 959 GESIAGASTIRGFGQEK----RFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVF 1014
E I+G + I+ F +E+ +F + N L + S + L M +++ F
Sbjct: 221 -EDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS-GVLPPL---MNMVNNLGF 275
Query: 1015 AFCMVLLVSFPHGAIDPSMAGLAVTYG-----LNLNARLSRWILSFCKLENKIIS----I 1065
A G +T G + + + +R + N I
Sbjct: 276 ALISGF------GGW--LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASA 327
Query: 1066 ERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGK 1125
ERI++ + +D G IE ++ Y + P+ L IT G+
Sbjct: 328 ERIFEIL----DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQ 382
Query: 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFE 1185
K+ +VG TGSGK+T++ L R + G+I++D IDI I LRS +GI+ QD LF
Sbjct: 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS 442
Query: 1186 GTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLV 1242
T++ NL +P +D EI EA + ++ + ET + +NG++ S GQRQL+
Sbjct: 443 TTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 1243 SLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVL 1302
++ RA L +IL+LDEAT++VDT T+ IQ + + T IAHR+ T+ ++DL++
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII 560
Query: 1303 VLSDGRVAE 1311
VL DG + E
Sbjct: 561 VLRDGEIVE 569
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 7e-36
Identities = 130/592 (21%), Positives = 248/592 (41%), Gaps = 62/592 (10%)
Query: 112 EKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETF 171
EK +NPT T L L+ + VF +++I+ + PYL+ +D + F
Sbjct: 14 EKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF 73
Query: 172 PHEGYILAGIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHT 231
+ + L + Q + + + V L ++ K ++
Sbjct: 74 DLLPRYMLILGTIYALTSLLFWLQGKIMLTL-SQDVVFRLRKELFEKLQRVPVGFFDRTP 132
Query: 232 SGEIVNYMAVDVQRVGD-YSWYLHDIWMLPLQIILALAI-LYKNVGIASVATLIATIISI 289
G+I++ + DV + + + + + + A+ + NV ++ + TL +++
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS-LVTLSIVPLTV 191
Query: 290 VVTVPVAKVQEEY----QDKL--MAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEM 343
++T V+ +Y Q L + E E + + ++KL E++ + + +
Sbjct: 192 LITQIVSSQTRKYFYENQRVLGQLNGIIE------EDISGLTVIKLFTREEKEMEKFDRV 245
Query: 344 RGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLS--AMATF-- 399
LRK + + V + F G L +++ +ATF
Sbjct: 246 N----ESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 400 --RILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENA 457
R PL + +M+ S +RI L EE ++D V R + I+ +N
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRG-EIEFKNV 360
Query: 458 EFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-------GEIPKISG- 509
F + +P L I+ + G +VA+ G GSGK+++++ ++ G+I + G
Sbjct: 361 WFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGI 417
Query: 510 --------EVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLK----- 556
+R + V Q + S ++EN+ +G+P A +++ A L
Sbjct: 418 DIRKIKRSSLR--SSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHF 473
Query: 557 -KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
K L G +T++ D G +LS GQ+Q + + RA + I +LD+ S VD T E
Sbjct: 474 IKHLP---EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT--EK 528
Query: 616 FKEYIMTAL-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
+ M L KT I + H++ + AD I+VL++G I++ GK+D+L+Q
Sbjct: 529 SIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 233 bits (598), Expect = 6e-66
Identities = 156/604 (25%), Positives = 264/604 (43%), Gaps = 83/604 (13%)
Query: 758 GRVSMKVYLSYMAAAYRG--LLIPLIILAQVLFQFLQIASNWWMAWA--NPQTEGDQPKV 813
G K Y+ Y +L PL ++ +V+ Q +A GD V
Sbjct: 7 GGGGSKTLARYLKP-YWIFAVLAPLFMVVEVICDLSQP---TLLARIVDEGIARGDFSLV 62
Query: 814 NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRS-VFRAPMSF----FD 868
+L++ +AL V + F A+Q F LR +FR +SF +
Sbjct: 63 LKTGILMLIVAL------IGAVGGIGCTVFASYASQN-FGADLRRDLFRKVLSFSISNVN 115
Query: 869 STPAGRILNRVSID----QSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVT----WQVLL 920
++ R++ D Q++V + + R+ + VG I VM + VL+
Sbjct: 116 RFHTSSLITRLTNDVTQLQNLVMMLL--RI--VVRAPLLFVGGI-VMAVSINVKLSSVLI 170
Query: 921 LVIPMAVACLWMQKYYMASSRELVRIVSIQKS--PIIHLFGESIAGASTIRGFGQE---- 974
+IP V + L R + Q+S + + E++ G +R F +E
Sbjct: 171 FLIPPIVLLFV---WLTKKGNPLFRKI--QESTDEVNRVVRENLLGVRVVRAFRREEYEN 225
Query: 975 KRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDPSMA 1034
+ F K N L L + L F+ M+ ++ F G +
Sbjct: 226 ENFRKANESLRRSIIS--------AFSLIVFALPLFIFIVNMGMIAVLWF--GGVLVRNN 275
Query: 1035 GLAV-------TYGLNLNARLSRWILSFCKLENKII-------SIERIYQYSQIPGEAPP 1080
+ + Y + + + S + N + S +R+ ++ E P
Sbjct: 276 QMEIGSIMAYTNYLMQI-------MFSLMMIGNILNFIVRASASAKRV---LEVLNEKPA 325
Query: 1081 VIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTL 1140
+ E + G++ +++ RY EN VL G+ + G + ++G TGSGKSTL
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTL 385
Query: 1141 IQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEE 1197
+ + RLI+P GR+ +D +D+ T+ L DLR + +PQ+ LF GTI+ NL +
Sbjct: 386 MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--D 443
Query: 1198 HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
+D EI EA +Q+ D + + ++ V G N+S GQ+Q +S+ RAL+K+ ++L+L
Sbjct: 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503
Query: 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGR 1317
D+ T+SVD T+ I ++ K CT I +IPT + +D +LVL +G+VA F T
Sbjct: 504 DDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563
Query: 1318 LLED 1321
LLE
Sbjct: 564 LLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 4e-45
Identities = 111/431 (25%), Positives = 191/431 (44%), Gaps = 48/431 (11%)
Query: 263 IILALAILYKNVGIASVATLIATIISIVVTVPVAKVQ---EEYQDKLMAAKDERMRKTSE 319
I++A++I NV ++SV + I ++ K + Q+ DE R E
Sbjct: 155 IVMAVSI---NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQEST----DEVNRVVRE 207
Query: 320 CLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIF-------- 371
L +R+++ A+ R + E R R + + + I F P+F
Sbjct: 208 NLLGVRVVR--AF-RREEYENENFRKANESLRRSIISAFSLIVFAL---PLFIFIVNMGM 261
Query: 372 VAAVTFGTSILLGAQLTAGSVLSAMA-TFRILQEPLRNFPDLVSMMAQTKVSLDRISGFL 430
+A + FG ++ Q+ GS+++ +I+ L ++++ + + S R+ L
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFS-LMMIGNILNFIVRASASAKRVLEVL 320
Query: 431 QEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVG 490
E+ E+A L ++ EN EF Y ++ P LSG++ V G VAV G G
Sbjct: 321 NEKPAIEEADNALALPNVEGSVSFENVEFR-YFENTDPVLSGVNFSVKPGSLVAVLGETG 379
Query: 491 SGKSSLLSCIL-------GEIPKISGE-VR------LCGTAAYVSQSAWIQSGNIEENIL 536
SGKS+L++ I G + ++ VR L G + V Q + SG I+EN+
Sbjct: 380 SGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLK 438
Query: 537 FGSPMDKAKYKKVIHACSL---KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593
+G A +++ A + + G + + G N SGGQKQR+ +ARAL +
Sbjct: 439 WGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496
Query: 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRI 653
+ +LDD S+VD T + + T +T ++ AD ILVL EG++
Sbjct: 497 KPKVLILDDCTSSVDPITEKRILDG-LKRYTKGCTTFIITQKIPTALLADKILVLHEGKV 555
Query: 654 IQAGKYDDLLQ 664
G + +LL+
Sbjct: 556 AGFGTHKELLE 566
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 1e-60
Identities = 75/241 (31%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
+ I +++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKS 1210
+++ID D++ + LR ++G++ QD L +I N+ +P S ++ A +
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
D + + T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D +++
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 1271 LIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+I + + K TV IAHR+ TV ++D ++V+ G++ E LL + S++ L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 1331 T 1331
Sbjct: 243 Q 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 28/234 (11%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
I N F Y S L I++ + +G + + G GSGKS+L I +G+
Sbjct: 7 DITFRNIRFR-YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 511 VRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G V Q + + +I +NI +P +KVI+A L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 558 DLEL---FSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D SE
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE--SE 181
Query: 615 LFKEYIMTAL----ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
IM + +TVI + H++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 182 ---HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-60
Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 9/262 (3%)
Query: 1062 IISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAF 1121
I +E ++ + E V + + G IE ++ Y + L ++
Sbjct: 22 FIDMENMFD---LLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFTV 77
Query: 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDP 1181
G+ + +VG +G+GKST+++ LFR + + G I ID DIS + LRS +G++PQD
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 1182 NLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238
LF TI N+ + E+ A + + D + + T V E G S G+
Sbjct: 138 VLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195
Query: 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDS 1298
+Q V++ R +LK I++LDEAT+++DT+ + IQ + + T +AHR+ TV+++
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA 255
Query: 1299 DLVLVLSDGRVAEFDTPGRLLE 1320
D +LV+ DG + E LL
Sbjct: 256 DQILVIKDGCIVERGRHEALLS 277
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 4e-40
Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 31/312 (9%)
Query: 402 LQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCW 461
+ LV + + ++ + L+EE +D P I+ EN F +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY 63
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-------GEIPKISG-EVR- 512
R TL +S V G +A+ G G+GKS++L + G I +I G ++
Sbjct: 64 ADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQDISQ 120
Query: 513 -----LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLELFSH 564
L V Q + + I +NI +G A +V A + + F
Sbjct: 121 VTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPE 178
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
G +T +G+RG+ LSGG+KQRV +AR + + I LLD+ SA+D + I +L
Sbjct: 179 GYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-----ERAIQASL 233
Query: 625 ----ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAI 680
AN+T I V H++ + AD ILV+K+G I++ G+++ LL G + +
Sbjct: 234 AKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQE 293
Query: 681 EAMDIPNHSSED 692
E + + +
Sbjct: 294 ETSEDTKPQTME 305
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 6e-60
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 3/226 (1%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ + Y ++ +L I+ I G +G GKST+ L R +P G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD--PLEEHSDREIWEALDKSQLGD 1214
ID I I L + RS++G + QD + GTIR NL +++D ++W+ LD +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
V +L T V E G S GQRQ +++ RA L+ +IL+LDEATAS+D+ +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+ + K T IAHR+ T++D+D + + G++ L+
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 2e-35
Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 24/248 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-------GEI 504
+ + +F Y S L IS + +A G G GKS++ S + GEI
Sbjct: 2 LSARHVDFA-YDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 505 PKISG-EVR------LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL-- 555
I G + +VSQ + I +G I EN+ +G D + + L
Sbjct: 60 -TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD-YTDEDLWQVLDLAF 117
Query: 556 -KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ +E T +G+RG+ +SGGQ+QR+ +ARA ++ I +LD+ +++D+ SE
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE--SE 175
Query: 615 -LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALV 673
+ ++ + + + +T + + H++ + AD I +++G+I +GK+++L+ + V
Sbjct: 176 SMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
Query: 674 SAHHEAIE 681
S +
Sbjct: 236 SEQLTVGQ 243
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 7e-57
Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 8/244 (3%)
Query: 1082 IEDSRPPSSWPE-NGTIELIDLKVRYGENLP-LVLHGITCAFPGGKKIGIVGRTGSGKST 1139
+E S + IE D+ Y + L I P G +VG TGSGKST
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 1140 LIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPLE 1196
+ + L+R + G I I +++ + +RS +GI+PQD LF TI+ N+
Sbjct: 62 IAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL-- 118
Query: 1197 EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV 1256
+ +D E+ +A +QL D + +K +T V G S G+RQ +++ R LLK +I++
Sbjct: 119 DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 1257 LDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPG 1316
DEAT+S+D+ T+ L QK + K+ T+ IAHR+ T+ ++ +++L+ G++ E T
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238
Query: 1317 RLLE 1320
LL+
Sbjct: 239 DLLK 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 3e-36
Identities = 65/251 (25%), Positives = 123/251 (49%), Gaps = 28/251 (11%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL------GEI 504
I+ + F + ++ TL I+ + G A+ G GSGKS++ + G+I
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 505 PKISGE-VR------LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---S 554
KI G+ V + V Q + + I+ NIL+G A ++VI A
Sbjct: 77 -KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQ 133
Query: 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
L +E TI+G++G+ LSGG++QR+ +AR L +D I + D+ S++D+ T
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT--- 190
Query: 615 LFKEYIMTAL----ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFN 670
+ A+ N+T+I + H++ + +A+ I++L +G+I++ G + DLL+ ++
Sbjct: 191 --EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248
Query: 671 ALVSAHHEAIE 681
+ + +
Sbjct: 249 EMWNMQSGGND 259
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 6e-49
Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 1084 DSRPPSSWPEN--GTIELIDLKVRYGENLP-----LVLHGITCAFPGGKKIGIVGRTGSG 1136
S P N G ++ D+ Y P VL G+T GK +VG GSG
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAY----PNHPNVQVLQGLTFTLYPGKVTALVGPNGSG 57
Query: 1137 KSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD--P 1194
KST+ L L +P G++++D + H L +++ + Q+P LF + R N+
Sbjct: 58 KSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117
Query: 1195 LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254
+ EI +S D + G Q +T V E G+ S GQRQ V+L RAL+++ R+
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 1255 LVLDEATASVDTATDNLIQKII--RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEF 1312
L+LD AT+++D +Q+++ E+ TV I ++ + +L L +G V E
Sbjct: 178 LILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237
Query: 1313 DTPGRLLEDKSSMFLKLVT 1331
T +L+E + + +V
Sbjct: 238 GTHLQLME-RGGCYRSMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 9e-37
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 34/256 (13%)
Query: 452 IQIENAEFCWYPSSSRPT---LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
++ ++ F YP+ P L G++ + G A+ G GSGKS++ + +
Sbjct: 17 VKFQDVSFA-YPN--HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 509 GEVRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL 555
G+V L G A V Q + + ENI +G +++
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAME 132
Query: 556 ---KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTG 612
+ F G T +G+ G LSGGQ+Q V LARAL + + +LD+ SA+DA
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG-- 190
Query: 613 SE------LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAG 666
++ L++ A++TV+ +T Q+ A IL LKEG + + G + L++ G
Sbjct: 191 NQLRVQRLLYE---SPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG 247
Query: 667 TDFNALVSAHHEAIEA 682
+ ++V A +A
Sbjct: 248 GCYRSMVEALAAPSDA 263
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 47/262 (17%)
Query: 436 QEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSS 495
++ ++PR +++ IQ++ + L IS ++ +G + + G+ G+GK++
Sbjct: 7 HHHSSGLVPR-GSHMLIQLDQIGR-MK--QGKTILKKISWQIAKGDKWILYGLNGAGKTT 62
Query: 496 LLSCILGEIPKISGEVRLCGTA---------------AYVSQS---AWIQSGNIEENIL- 536
LL+ + P SG V L G +VS S + + + + ++
Sbjct: 63 LLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122
Query: 537 --------FGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588
+ D+ + + A L K + + + Q I LS G+KQRV +A
Sbjct: 123 GAFKSIGVYQDIDDEIRNE----AHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIA 173
Query: 589 RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK----TVIFVTHQVEFLPAA-D 643
RAL + +LD+P + +D E I+ +L++ +I+VTH +E + A
Sbjct: 174 RALMGQPQVLILDEPAAGLDFI-ARESLLS-ILDSLSDSYPTLAMIYVTHFIEEITANFS 231
Query: 644 FILVLKEGRIIQAGKYDDLLQA 665
IL+LK+G+ IQ G +D+L +
Sbjct: 232 KILLLKDGQSIQQGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 39/246 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I+L + +L I+ G K + G G+GK+TL+ L G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1157 IDNIDISTIG--LHDLRSRLGIIPQDPNLFEGTIRCNLDPLE--------------EHSD 1200
+ +G +R +G + + ++ + D
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 1201 REIWEA---LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
EA L + Q + L S G++Q V + RAL+ Q ++L+L
Sbjct: 137 EIRNEAHQLLKLVGMSAK---AQQYIGY--L------STGEKQRVMIARALMGQPQVLIL 185
Query: 1258 DEATASVDTATDNLIQKIIRT---EFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRVAEFD 1313
DE A +D + I+ + + + + H I + + +L+L DG+ +
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245
Query: 1314 TPGRLL 1319
+L
Sbjct: 246 AVEDIL 251
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 6e-31
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
N A+ +EN F + + ++ +++G +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 509 GEVRLCGTAAYVSQS-AWIQSGNIEENILFG--------SPMDKAKYKKVIHACSLKK-D 558
G++ + + +V Q + + ++ + +L G + Y+ + A L +
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQA--LDYLN 117
Query: 559 LELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
L + R LSGGQ+Q + +ARA+ + + LLD+P SA+D +
Sbjct: 118 LTHLA--------KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS 169
Query: 618 EYIMTALA---NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQ 655
++ LA N TV+F THQ + A A+ L+L +
Sbjct: 170 --LLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 8e-23
Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 40/233 (17%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
N + + +L Y + + G + ++G+ G GKSTL+ L + P G
Sbjct: 2 NKALSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEG-----------TIRCNLDPLEEHSDRE 1202
+I ++ +G +PQ + + N + D +
Sbjct: 61 KI-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107
Query: 1203 I-WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ +ALD L + ++ + S GQRQL+ + RA+ + ++++LDE T
Sbjct: 108 VAMQALDYLNLTHL---AKREF--------TSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 1262 ASVDTATDNLIQKIIRTEFKD--CTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
+++D A +++ ++ + TV H+ V+ ++ L+L+
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 8e-30
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 27/254 (10%)
Query: 1097 IELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
IE++++ + PL L ++ G+ + + G TGSGKSTL+Q + LIEP G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIW 1204
++ D +++R +GI Q P F + N P + +
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL-VK 118
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
+A++ L K P S G+++ V++ ++ + IL+LDE +
Sbjct: 119 KAMEFVGLDF----DSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 1265 D-TATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322
D +L++ + + + TV I+H I TVI+ D V+VL G+ T LE
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Query: 1323 SSMFLKLVTEYSSR 1336
F R
Sbjct: 230 DPRFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 7e-22
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 32/236 (13%)
Query: 451 AIQIENAEFCWYPSSS---RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKI 507
I++ N + + + L +S+ ++ G + V G GSGKS+LL + G I
Sbjct: 2 RIEVVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60
Query: 508 SGEVRLCG----------TAAYVSQSAWIQ--SGNIEENILFGSPM----DKAKYKKVIH 551
SG+V G Q Q + + + + F D+ V
Sbjct: 61 SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKK 119
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
A +E + LSGG+K+RV +A + + DI +LD+P +D
Sbjct: 120 A------MEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 612 GSELFKEYIMTAL--ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
++L + I+ KTVI ++H +E + D ++VL++G+ + G + L+
Sbjct: 174 KTDLLR--IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 41/235 (17%)
Query: 452 IQIENAEFCWYPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
IQ++N L I+++V+ G +V + G GSGK++LL I G +P SG
Sbjct: 2 IQLKNVGI-TLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SG 58
Query: 510 EVRLCGT--------AAYVSQSAWIQSG--NIEENILFG---SPMDKAKYKKVIHACSLK 556
+ + G Y + + + + +D+ + +++ A L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLG 118
Query: 557 KDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+++ R + LS GQ V+ + AL +I LD+PF VDA +
Sbjct: 119 EEIL-----------RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167
Query: 616 ---FKEYIMTALANKTVIFVTH-QVEFLPAADFILVL-KEGRIIQAGKYDDLLQA 665
KEY K I VTH ++ R+ +LL++
Sbjct: 168 SRYIKEY------GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 3e-21
Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 30/234 (12%)
Query: 1097 IELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
I+L ++ + L I G +K+ I+G GSGK+TL++A+ L+ P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLF--EGTIRCNLD---PLEEHSDREIWEALDK 1209
I I+ +++ +R+ + P + T+ + L+ E L
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1210 SQLGDIVRGKD-QKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
+LG+ + + KL S GQ LV AL Q I+ LDE +VD A
Sbjct: 115 LKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1269 DNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDG-RVAEFDTPGRLLE 1320
++I + I+ K + H + + + G R+ + LLE
Sbjct: 164 RHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 7e-28
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 26/243 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+++ +L Y + L GI G+ I+G G GKSTL Q +++P+ GRI+
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1157 IDNIDIST--IGLHDLRSRLGIIPQDPN--LFEGTIR-------CNLDPLEEHSDREIWE 1205
DN I G+ LR +GI+ QDP+ LF ++ N+ E+ + +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
AL ++ + + L S GQ++ V++ L+ + ++L+LDE TA +D
Sbjct: 127 ALKRTGIEHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 1266 TATDNLIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ I K++ + T+ H I V D V V+ +GRV P + +K
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
Query: 1323 SSM 1325
+
Sbjct: 236 EVI 238
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 39/244 (15%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
+ + +++E + Y + L GI+M + RG A+ G G GKS+L G +
Sbjct: 3 LEDYILKVEELNYN-YSDGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP 60
Query: 507 ISGEVRLCGTAAYVSQSAWIQ-----------------SGNIEENILFGSPM----DKAK 545
SG + S+ ++ S ++ +++ FG + + +
Sbjct: 61 SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDE 119
Query: 546 YKKVIHACSLKKDLELFSHGDQTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPF 604
+K + + +E D+ LS GQK+RV +A L + + +LD+P
Sbjct: 120 IRKRVDNALKRTGIEHLK--------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 605 SAVDAHTGSELFKEYIMTAL---ANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYD 660
+ +D SE+ K ++ + T+I TH ++ +P D + V+KEGR+I G
Sbjct: 172 AGLDPMGVSEIMK--LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 661 DLLQ 664
++
Sbjct: 230 EVFA 233
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 23/259 (8%)
Query: 427 SGFLQEEEL-----QEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGM 481
G+L++E + + T + R +E L ++ +G
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEY--PRLVKDYGSFKLEVEPGEIRKGE 383
Query: 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQS-GNIEENILFGSP 540
+ + G G GK++ + + G G+V T AY Q + G + E L
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE--LLSK- 440
Query: 541 MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLL 600
+D +K + L K L + D+ + +LSGG+ QRV +A L +DADIYLL
Sbjct: 441 IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLL 495
Query: 601 DDPFSAVDAHTG---SELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQA 656
D+P + +D S + + KT + V H V + +D ++V EG +
Sbjct: 496 DEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRH 552
Query: 657 GKYDDLLQAGTDFNALVSA 675
G+ + N +++
Sbjct: 553 GRALPPMGMREGMNRFLAS 571
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP------KISGEVRLCGTAAYVSQSAWI 526
V GM V + G G+GK++ + + G++ S + + Q+ +
Sbjct: 110 RLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE 169
Query: 527 QSGNIEENILFGSPM----DKAKYKKVIHACSLKKDLELFSHGDQTI-------IGDRGI 575
+ N E + KA KV ++ F ++ + + DR +
Sbjct: 170 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKF---EEVVKELELENVLDREL 226
Query: 576 -NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTVIFV 632
LSGG+ QRV +A AL + A Y D+P S +D ++ + ++ LA K V+ V
Sbjct: 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVLVV 284
Query: 633 THQVEFLPA-ADFILVLKEGRIIQ 655
H + L +D I V+ +
Sbjct: 285 EHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-17
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
L G+ IGIVG G GK+T ++ L + EP G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------- 416
Query: 1173 RLGIIPQDPNL---FEGTIR---CNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETP 1226
L + + + +EGT+ +D + +S+ E L + D+ D+ +E
Sbjct: 417 -LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL---YDRNVED- 471
Query: 1227 VLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR--TEFKDCT 1284
L S G+ Q V++ LL+ A I +LDE +A +D + + IR E + T
Sbjct: 472 -L------SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 1285 VCTIAHRIPTVID--SDLVLVLSDGRVAEFDTPGRLLEDKSSM--FLKLV 1330
+ H + +ID SD ++V +G + + M FL V
Sbjct: 525 ALVVEHDV-LMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASV 572
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 38/241 (15%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP------ACGR 1154
D RYG N VL+ + G +GIVG G+GK+T ++ L + P
Sbjct: 96 DCVHRYGVNA-FVLYRL-PIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 1155 IIIDNIDISTIGLHDLRSR---LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQ 1211
+I + + + R + + + + +D L + ++ E L K
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQ---------YVDLLPKAVKGKVRELLKKV- 203
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSV-----GQRQLVSLGRALLKQARILVLDEATASVDT 1266
D V ++ ++ LEN + + G+ Q V++ ALL++A DE ++ +D
Sbjct: 204 --DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261
Query: 1267 ATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID--SDLVLVLSDGRVAEFDTPGRLLEDK 1322
+ ++IR V + H + V+D SD++ V+ G + K
Sbjct: 262 RQRLKVARVIR-RLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEPGVY----GIFSKPK 315
Query: 1323 S 1323
Sbjct: 316 G 316
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-24
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 13/194 (6%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
L+ + + + G G+GK++L+ + G + G+ + Q
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586
+ + F + + + K L + DQ + +LSGG+ QRV
Sbjct: 425 KFPGTVRQLFFKKIRGQFLNPQFQTD--VVKPLRIDDIIDQEVQ-----HLSGGELQRVA 477
Query: 587 LARALYQDADIYLLDDPFSAVDAHTG---SELFKEYIMTALANKTVIFVTHQVEFLPA-A 642
+ AL ADIYL+D+P + +D+ S++ + +I+ KT V H A
Sbjct: 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLA 535
Query: 643 DFILVLKEGRIIQA 656
D ++V + A
Sbjct: 536 DKVIVFEGIPSKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 38/242 (15%)
Query: 1079 PPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKS 1138
+ + + + + LK G+ VL+ F + + ++G G+GK+
Sbjct: 336 FRIADATEDLQNDSASRAFSYPSLKKTQGDF---VLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1139 TLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPN--LFEGTIRCNLDPLE 1196
TLI+ L ++P G+ I +++S ++ LF IR
Sbjct: 393 TLIKLLAGALKPDEGQDIPK-LNVS-----MKPQKIAPKFPGTVRQLFFKKIR------G 440
Query: 1197 EHSDREIW-EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
+ + + + + ++ DI DQ+++ L S G+ Q V++ AL A I
Sbjct: 441 QFLNPQFQTDVVKPLRIDDI---IDQEVQH--L------SGGELQRVAIVLALGIPADIY 489
Query: 1256 VLDEATASVD----TATDNLIQKIIRTEFKDCTVCTIAHRIPTVID--SDLVLVLSDGRV 1309
++DE +A +D +I++ I T + H + +D V+V
Sbjct: 490 LIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDF-IMATYLADKVIVFEGIPS 546
Query: 1310 AE 1311
Sbjct: 547 KN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 50/244 (20%)
Query: 451 AIQIEN-----AEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP 505
AIQI N + S+ G + + G G GKS+ L + G+
Sbjct: 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQK 128
Query: 506 KISGEVRLCGT-AAYVSQSAWIQSGNIEENILFGSPM----------------------- 541
G + + N +L
Sbjct: 129 PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVG 188
Query: 542 ------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI-NLSGGQKQRVQLARALYQD 594
+ + V K L+L + + R I LSGG+ QR + + Q+
Sbjct: 189 ELLKLRMEKSPEDVKRYI---KILQL-EN-----VLKRDIEKLSGGELQRFAIGMSCVQE 239
Query: 595 ADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTVIFVTHQVEFLPA-ADFILVLKEG 651
AD+Y+ D+P S +D + I+ +L K VI V H + L +DF+ ++
Sbjct: 240 ADVYMFDEPSSYLDVKQRLNAAQ--IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
Query: 652 RIIQ 655
+
Sbjct: 298 PSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 4e-16
Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 31/231 (13%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRI----- 1155
+ RY N LH + PG + +G+VG G GKST ++ L +P GR
Sbjct: 82 HVTHRYSAN-SFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE 139
Query: 1156 ---IIDNIDISTIGLHD---LRSRLGIIPQDPNLF------EGTIRCNLDPLEEHSDREI 1203
II S + + L + I + + +G ++ + L+ ++
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSP 199
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
+ ++ + + +E L S G+ Q ++G + +++A + + DE ++
Sbjct: 200 EDVKRYIKILQLENVLKRDIEK--L------SGGELQRFAIGMSCVQEADVYMFDEPSSY 251
Query: 1264 VDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
+D +IIR V + H + + SD V ++
Sbjct: 252 LDVKQRLNAAQIIR-SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-24
Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 21/257 (8%)
Query: 428 GFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRP----TLSGISMKVDRGMRV 483
G+L++E ++ + T ++IE YP + L ++ +G +
Sbjct: 257 GYLKDENVR-FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVI 315
Query: 484 AVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQS-GNIEENILFGSPMD 542
+ G G GK++ + + G G++ T AY Q G + E L +D
Sbjct: 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSK-ID 372
Query: 543 KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDD 602
+K + L K L + D+ + LSGG+ QRV +A L +DADIYLLD+
Sbjct: 373 ASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 603 PFSAVDAH---TGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGK 658
P + +D S + + KT + V H V + +D ++V EG + G+
Sbjct: 428 PSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKYGR 484
Query: 659 YDDLLQAGTDFNALVSA 675
+ N +++
Sbjct: 485 ALPPMGMREGMNRFLAS 501
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-19
Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 47/268 (17%)
Query: 1077 EAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSG 1136
+ + L YG L G+ IGIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1137 KSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL---FEGTIR---C 1190
K+T ++ L + EP G+I D L + + + +EGT+
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQYIKADYEGTVYELLS 369
Query: 1191 NLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250
+D + +S+ E L + D+ D+++ + S G+ Q V++ LL+
Sbjct: 370 KIDASKLNSNFYKTELLKPLGIIDL---YDREV--------NELSGGELQRVAIAATLLR 418
Query: 1251 QARILVLDEATASVD----TATDNLIQKIIRTEFKDCTVCTIAHRIPTVID--SDLVLVL 1304
A I +LDE +A +D A I+ ++ + T + H + +ID SD ++V
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDV-LMIDYVSDRLMVF 475
Query: 1305 SDGRVAEFDTPGRLLEDKSSM--FLKLV 1330
+G ++ + + M FL +
Sbjct: 476 -EGEPGKYGRALPPMGMREGMNRFLASI 502
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 3e-16
Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 39/251 (15%)
Query: 1085 SRPPSSWPENGTIELIDLK-------VRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGK 1137
S +G + ++ RYG N VL+ + G +GIVG G+GK
Sbjct: 3 SSHHHHHHSSGLVPRSHMEQLEEDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGK 60
Query: 1138 STLIQALFRLIEP------ACGRIIIDNIDISTIGLHDLRSR---LGIIPQDPNLFEGTI 1188
ST ++ L + P +I + + + + + + + + +
Sbjct: 61 STAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV----- 115
Query: 1189 RCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSV-----GQRQLVS 1243
+L P + ++ E L K+ D ++ ++ LEN + G+ Q V+
Sbjct: 116 --DLIP--KAVKGKVIELLKKA---DETGKLEEVVKALELENVLEREIQHLSGGELQRVA 168
Query: 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDL 1300
+ ALL+ A DE ++ +D + IR +V + H + + SD+
Sbjct: 169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDI 227
Query: 1301 VLVLSDGRVAE 1311
+ V+
Sbjct: 228 IHVVYGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-15
Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 30/207 (14%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP------KISGEVRLCGTAAYVSQSAW 525
V GM V + G G+GKS+ + + G++ S + + Q+ +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 526 --IQSGNIEENILFGSPM----DKAKYKKVIHACSLKKDLELFSHGDQTI-------IGD 572
+++G I KA KVI + ++ + + +
Sbjct: 99 EKLKNGEIRPV--VKPQYVDLIPKAVKGKVIELLKKADETGKL---EEVVKALELENVLE 153
Query: 573 RGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA--NKTV 629
R I +LSGG+ QRV +A AL ++A Y D+P S +D + + L+ K+V
Sbjct: 154 REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR--AIRRLSEEGKSV 211
Query: 630 IFVTHQVEFLPA-ADFILVLKEGRIIQ 655
+ V H + L +D I V+ +
Sbjct: 212 LVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-23
Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 16/199 (8%)
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-AYVSQSAWI- 526
L + + G + + G G GK++ ++GEI G V +Y Q +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586
G +++ + A + K L L + + +LSGG+ Q++
Sbjct: 343 YDGTVQQ--YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLY 395
Query: 587 LARALYQDADIYLLDDPFSAVDAHT---GSELFKEYIMTALANKTVIFVTHQVEFLPA-A 642
+A L ++AD+Y+LD P S +D ++ K + H + A
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIA 453
Query: 643 DFILVLKEGRIIQAGKYDD 661
D I+V +G +AG
Sbjct: 454 DRIIVF-KGEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 9e-19
Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 31/258 (12%)
Query: 1078 APPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGK 1137
+ E S S ++ + + G+ L G+ IGI+G G GK
Sbjct: 251 KFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNGIGK 307
Query: 1138 STLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEE 1197
+T + L I G + + +S + + D + + + D L
Sbjct: 308 TTFARILVGEITADEGSVTPEKQILS------YKPQRIFPNYDGTVQQYLENASKDALST 361
Query: 1198 HSDR--EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
S E+ + L+ +L + + L S G+ Q + + L K+A +
Sbjct: 362 SSWFFEEVTKRLNLHRL------LESNVND--L------SGGELQKLYIAATLAKEADLY 407
Query: 1256 VLDEATASVDTATDNLIQKIIR--TEFKDCTVCTIAHRIPTVID--SDLVLVLSDGRVAE 1311
VLD+ ++ +D ++ K I+ T + I H + ++ D +D ++V
Sbjct: 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKA 466
Query: 1312 FDTPG-RLLEDKSSMFLK 1328
L+ + FL+
Sbjct: 467 GLATSPVTLKTGMNEFLR 484
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 4e-17
Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 26/208 (12%)
Query: 470 LSGISMKVDR-GMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------ 516
+ + + V G G GK+++L + GEI G+
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 517 -AAYV------SQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
Y + +E F K+ + EL + T
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL---NMTN 130
Query: 570 IGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
+ ++ LSGG QR+ +A +L ++AD+Y+ D P S +D + + I L NK
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAIRELLKNKY 189
Query: 629 VIFVTHQVEFL-PAADFILVLKEGRIIQ 655
VI V H + L D I ++ +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-15
Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 23/220 (10%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST 1164
RY N L G+ +G++G+ G GK+T+++ L I P G ++
Sbjct: 8 RYKVN-GFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKD 63
Query: 1165 IGLHDLR-SRLGIIPQDPNLFEGTIRC-----NLDPLEEHSDREIWEALDKSQLGDIVRG 1218
L R + ++ + ++ ++ + + E L K D
Sbjct: 64 EVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKI---DERGK 118
Query: 1219 KDQKLETPVLENGDNWSV-----GQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
KD+ E + N N G Q + + +LL++A + + D+ ++ +D +
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVID--SDLVLVLSDGRVAE 1311
K IR K+ V + H + V+D +DL+ ++
Sbjct: 179 KAIRELLKNKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-21
Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 30/204 (14%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA--------YVS 521
L I+M +++G V G G GK++LL I + + GE+ G ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 522 QSAWIQSG-NIEENILF-----GSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
+ + ++E+ + G ++K + + + + + +
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLG 132
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-TVIFVTH 634
LS G +RVQLA L +A+IY+LDDP A+D + + + I+ L K VI +
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK-VLKSILEILKEKGIVIISSR 191
Query: 635 QVEFLPAADFILVLKEGRIIQAGK 658
E L D L + K
Sbjct: 192 --EELSYCDVNENLHKYSTKIDKK 213
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 2e-21
Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 31/221 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ DL V Y + VL IT G + G G GK+TL++ + ++P G II
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEE-----HSDREIWEALDKS 1210
+ + I+ + + ++ +P++ + ++ L + + EI +AL+
Sbjct: 68 YNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
++ D +KL S G + V L LL A I VLD+ ++D + +
Sbjct: 123 EVLD----LKKKLGE--------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 1271 LIQKIIRTEFKD--CTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
+ K I K+ + + + D+ L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYST 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 48/231 (20%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
L ++ G+ + +VG G+GKSTL+ + + G I + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1173 RLGIIPQDPNLFEG-----TIRCNLDPLEEHSDREI-WEALDKSQLGDIVRGKDQKLETP 1226
+ Q + + + E+ + L D KL
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDD-------KLGRS 123
Query: 1227 VLENGDNWSVGQRQLVSLGRALL-------KQARILVLDEATASVDTA----TDNLIQKI 1275
+ S G+ Q V L +L ++L+LDE S+D A D ++ +
Sbjct: 124 TNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1276 IRTEFKDCTVCTIAHRIPTVID-------SDLVLVLSDGRVAEFDTPGRLL 1319
+ + + +H D + +L G++ +L
Sbjct: 180 SQ---QGLAIVMSSH------DLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 66/240 (27%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------- 517
+ L +S +V G + + G G+GKS+LL+ + G G ++ G
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSAT 69
Query: 518 ------AYVSQSAWIQSG-NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTII 570
AY+SQ + + ++
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTLH----------------------QHDKTRTELL 107
Query: 571 G------------DRGIN-LSGGQKQRVQLARALYQD-------ADIYLLDDPFSAVD-A 609
R N LSGG+ QRV+LA + Q + LLD+P +++D A
Sbjct: 108 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167
Query: 610 HTGS--ELFKEYIMTALANKTVIFVTHQVEFLPA--ADFILVLKEGRIIQAGKYDDLLQA 665
+ ++ + ++ +H + A +LK G+++ +G+ +++L
Sbjct: 168 QQSALDKILSAL---SQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLTP 223
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 6e-20
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 40/215 (18%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGTAAYVSQSAWI-- 526
L+ IS+ +D G + + G G GK++LL C+ G E P SGE+ L G +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKT--IFSKNTNLP 76
Query: 527 ----------QSG------NIEENILFGSPMDK----AKYKKVIHACSLKKDLELFSHGD 566
Q G + NI +G K + +++ LEL +
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAM------LELTGISE 130
Query: 567 QTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL- 624
R + LSGGQ+QR LARAL D ++ LLD+PFSA+D ++ ++ ++ AL
Sbjct: 131 L---AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALR 186
Query: 625 -ANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
K+ +FV+H + E L AD I V+K+GRI+Q
Sbjct: 187 ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 54/246 (21%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ + L + VL+ I+ + G+ + I+G +G GK+TL++ L +P G I
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 1157 IDNIDISTIGLH---DLRSRLGIIPQD----PNLFEGTIRCNL--------DPLEEHSDR 1201
+ I + + R RLG + Q+ P+L T+ N+ + R
Sbjct: 63 LSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHL---TVYRNIAYGLGNGKGRTAQERQR 118
Query: 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
I L+ + + ++ +L S GQ+Q +L RAL +++LDE
Sbjct: 119 -IEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLDEPF 166
Query: 1262 ASVDTATDNLIQKIIRTEFKDCTVCTIAHR--IPTVI---D-------SDLVLVLSDGRV 1309
+++D +++ IR + V D +D + V+ GR+
Sbjct: 167 SALDEQ----LRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217
Query: 1310 AEFDTP 1315
+ +P
Sbjct: 218 LQTASP 223
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 48/234 (20%), Positives = 104/234 (44%), Gaps = 28/234 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ + DL+ R G+ +L GI+ G+ G++G G+GK+T ++ + LI+P+ G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLD--------PLEEHSDREIWEAL 1207
+ ++ H++R + +P++ + L E + + A
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-VERAT 131
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+ + LG+ ++ T +S G + + + RAL+ R+ +LDE T+ +D
Sbjct: 132 EIAGLGEK---IKDRVST--------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1268 TDNLIQKIIRTEFKD--CTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRL 1318
++KI++ + T+ +H + V D + ++ +G + E T L
Sbjct: 181 NAREVRKILK-QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 50/225 (22%)
Query: 470 LSGISMKVDRGMRVAVCGMVG---SGKSSLLSCILGEIPKISGEVRLCG----------- 515
L GIS +++ G + G++G +GK++ L I I SG V + G
Sbjct: 31 LKGISFEIEEG---EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87
Query: 516 ---------TAAYVSQSAWIQSGNIEENILFGSP---MDKAKYKKVIHACSLKKDLELFS 563
AY + E + F + ++ ++++ E+
Sbjct: 88 KLISYLPEEAGAYRNMQGI-------EYLRFVAGFYASSSSEIEEMVERA-----TEIAG 135
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT- 622
G++ I DR S G +++ +ARAL + + +LD+P S +D E ++ +
Sbjct: 136 LGEK--IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE-VRKILKQA 192
Query: 623 ALANKTVIFVTH---QVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+ T++ +H +VEFL D I ++ G I++ G ++L +
Sbjct: 193 SQEGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEELKE 235
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 6e-19
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 40/235 (17%)
Query: 447 MTNVAIQIENA--EFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-E 503
++ I+ + ++ G+S ++ G V + G GSGK+++L I G E
Sbjct: 10 HGSMTIEFVGVEKIY----PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65
Query: 504 IPKISGEVRLCG-----TAAY------VSQS-AWIQSGNIEENILFGSPMDKAK----YK 547
P G+V + G V Q+ A Q + +N+ FG +
Sbjct: 66 RPT-KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 548 KVIHACSLKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSA 606
+V + LE + +R + LSGGQ+QRV LARAL + L D+PF+A
Sbjct: 125 RVRELLRFMR-LESY--------ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAA 175
Query: 607 VDAHTGSELFKEYIMTALANK---TVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
+D EL + + ++ T +FVTH Q E L AD +LVL EG + Q G
Sbjct: 176 IDTQIRRELRTF--VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 59/259 (22%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI----EPA 1151
TIE + ++ Y + G++ G+ +G++G +GSGK+T++ RLI P
Sbjct: 14 TIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTIL----RLIAGLERPT 68
Query: 1152 CGRIIIDNIDISTIGLHDLRSRLGIIPQD----PNLFEGTIRCNL--------DPLEEHS 1199
G + I ++ + R +G++ Q+ ++ T+ N+ P +E
Sbjct: 69 KGDVWIGGKRVTDLPPQK-R-NVGLVFQNYALFQHM---TVYDNVSFGLREKRVPKDEMD 123
Query: 1200 DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
R + E L +L +L S GQ+Q V+L RAL + ++L+ DE
Sbjct: 124 AR-VRELLRFMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDE 171
Query: 1260 ATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP-TVI----D-------SDLVLVLSDG 1307
A A D I++ +RT + + + T + D +D VLVL +G
Sbjct: 172 PFA----AIDTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 1308 RVAEFDTPGRLLEDKSSMF 1326
V +F TP + E ++F
Sbjct: 223 NVEQFGTPEEVYEKPGTLF 241
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 9e-19
Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 25/249 (10%)
Query: 1078 APPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGS 1135
S + I+L ++ + + + L+ ++ P G+ G++G +G+
Sbjct: 6 HHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGA 65
Query: 1136 GKSTLIQALFRLIEPACGRIIIDNIDISTI---GLHDLRSRLGIIPQDPNLFEG-TIRCN 1191
GKSTLI+ + L P G +++D +++T+ L R ++G+I Q NL T+ N
Sbjct: 66 GKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN 125
Query: 1192 LD-PLE--EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248
+ PLE E+ + + L +V D+ P N S GQ+Q V++ RAL
Sbjct: 126 VALPLELDNTPKDEVKRRVTE--LLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARAL 178
Query: 1249 LKQARILVLDEATASVDTATDN----LIQKIIRTEFKDCTVCTIAHRIPTVIDS--DLVL 1302
++L+ D+AT+++D AT L++ I T+ I H + V+ D V
Sbjct: 179 ASNPKVLLCDQATSALDPATTRSILELLKD-INRRLG-LTILLITHEM-DVVKRICDCVA 235
Query: 1303 VLSDGRVAE 1311
V+S+G + E
Sbjct: 236 VISNGELIE 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 39/229 (17%)
Query: 462 YPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISGEVRLCGTA- 517
+ +R L+ +S+ V G V G G+GKS+L+ C+ L E P G V + G
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQEL 92
Query: 518 AYVSQSAW----------------IQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLEL 561
+S+S + S + N+ P++ K + + L L
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELDNTPKDEVKRRVTELLSL 150
Query: 562 FSHGDQTIIGDRG----INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---E 614
+GD+ NLSGGQKQRV +ARAL + + L D SA+D T E
Sbjct: 151 VG------LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662
L K+ I L T++ +TH+++ + D + V+ G +I+ ++
Sbjct: 205 LLKD-INRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-19
Identities = 61/203 (30%), Positives = 85/203 (41%), Gaps = 34/203 (16%)
Query: 490 GSGKSSLLSCILG-EIPKISGEVRLCG-----TAAY------VSQS-AWIQSGNIEENIL 536
G+GKS L I G P GEVRL G V Q A ++ NI
Sbjct: 34 GAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92
Query: 537 FG---SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALY 592
+G + ++V + DR LSGG++QRV LARAL
Sbjct: 93 YGLRNVERVERD-RRVREMAEKLG-IAHL--------LDRKPARLSGGERQRVALARALV 142
Query: 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFVTH-QVEFLPAADFILVL 648
+ LLD+P SAVD T L +E + + + ++ VTH +E AD + V+
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 649 KEGRIIQAGKYDDLLQAGTDFNA 671
GRI++ GK +L A A
Sbjct: 201 LNGRIVEKGKLKELFSAKNGEVA 223
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQD- 1180
G ++G TG+GKS ++ + +++P G + ++ DI+ + R +G +PQD
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDY 79
Query: 1181 ---PNLFEGTIRCNLD-PLEEHSDREIW----EALDKSQLGDIVRGKDQKLETPVLENGD 1232
P+L ++ N+ L E E +K + ++ K +L
Sbjct: 80 ALFPHL---SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL--------- 127
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR- 1291
S G+RQ V+L RAL+ Q R+L+LDE + A D + ++ E + +
Sbjct: 128 --SGGERQRVALARALVIQPRLLLLDEPLS----AVDLKTKGVLMEELRF-----VQREF 176
Query: 1292 -IPTVI---D-------SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324
+P + D +D V V+ +GR+ E L K+
Sbjct: 177 DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 40/221 (18%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI--LGEIPKISGEVRLCGTAAYVSQSAW-- 525
L GI++ + G V V G GSGKS+ L C+ L + GE+ + G +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTNLNK 97
Query: 526 --------IQSGN------IEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
Q N + NI PM K +K + K +EL D+ +
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLA-PM---KVRKWPREKAEAKAMELL---DKVGLK 150
Query: 572 DRG----INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY--IMTALA 625
D+ +LSGGQ QRV +ARAL + I L D+P SA+D E+ E +M LA
Sbjct: 151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLSVMKQLA 206
Query: 626 NK--TVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLL 663
N+ T++ VTH++ F D +L + G II+ GK +DL
Sbjct: 207 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 1078 APPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGK 1137
P I++ LK +G VL GI G+ + ++G +GSGK
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGK 63
Query: 1138 STLIQALFRLIEPACGRIIIDNIDIS--TIGLHDLRSRLGIIPQDPNLF-EGTIRCN--L 1192
ST ++ L L + G IIID I++ L+ +R +G++ Q NLF T+ N L
Sbjct: 64 STFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL 123
Query: 1193 DPLE-EHSDREIWEALDKS-QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250
P++ RE +A K+ +L D V KD+ P D+ S GQ Q V++ RAL
Sbjct: 124 APMKVRKWPRE--KAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAM 176
Query: 1251 QARILVLDEATASVD 1265
+ +I++ DE T+++D
Sbjct: 177 EPKIMLFDEPTSALD 191
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 5e-18
Identities = 69/213 (32%), Positives = 100/213 (46%), Gaps = 43/213 (20%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEVRLCGT-----------A 517
L +S+KV+ G + G G+GK+ L I G +P SG + L G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 518 AYVSQS-------AWIQSGNIEENILFGSPMDKA-KYKKVIHACSLKKDLELFSHGDQTI 569
A+V Q+ N+++N+ FG M K K+V+ K +E
Sbjct: 75 AFVYQNYSLFPHM------NVKKNLEFGMRMKKIKDPKRVLDTARDLK-IEHL------- 120
Query: 570 IGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK- 627
DR LSGG++QRV LARAL + I LLD+P SA+D T + ++ L K
Sbjct: 121 -LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM--LSVLHKKN 177
Query: 628 --TVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
TV+ +TH Q E AD I V+ +G++IQ G
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 50/255 (19%), Positives = 99/255 (38%), Gaps = 58/255 (22%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI----EPAC 1152
IE+ L ++ L ++ G+ I+G TG+GK+ + LI P
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFL----ELIAGFHVPDS 54
Query: 1153 GRIIIDNIDISTIGLHDLRSR-LGIIPQD----PNLFEGTIRCNLD-PLEEH---SDREI 1203
GRI++D D++ + + + Q+ P++ ++ NL+ + + +
Sbjct: 55 GRILLDGKDVTDLSPEK---HDIAFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRV 108
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
+ ++ ++ L S G++Q V+L RAL+ +IL+LDE +
Sbjct: 109 LDTARDLKIEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLS- 156
Query: 1264 VDTATDNLIQKIIRTEFKDCTVCTIAHRI-PTVI----D-------SDLVLVLSDGRVAE 1311
A D Q+ R + + TV+ D +D + V+ DG++ +
Sbjct: 157 ---ALDPRTQENAREMLSV-----LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208
Query: 1312 FDTPGRLLEDKSSMF 1326
P + E
Sbjct: 209 VGKPEEIFEKPVEGR 223
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 8e-18
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 57/259 (22%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIP 505
M+ + + + Y L G+S++ G +++ G GSGKS+ L CI E P
Sbjct: 2 MSENKLHVIDLH-KRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP 58
Query: 506 KISGEVRLCGTAAYVSQSAWI---------------------QSGN------IEENILFG 538
G + + G + + Q N + EN++
Sbjct: 59 S-EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117
Query: 539 SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG-----INLSGGQKQRVQLARALYQ 593
P+ + + + ++ L+ + I +R ++LSGGQ+QRV +ARAL
Sbjct: 118 -PI---QVLGLSKHDARERALKYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170
Query: 594 DADIYLLDDPFSAVDAHTGSELFKE--YIMTALANK--TVIFVTHQVEFLPA---ADFIL 646
+ D+ L D+P SA+D EL E IM LA + T++ VTH++ F A + ++
Sbjct: 171 EPDVLLFDEPTSALD----PELVGEVLRIMQQLAEEGKTMVVVTHEMGF--ARHVSSHVI 224
Query: 647 VLKEGRIIQAGKYDDLLQA 665
L +G+I + G + +
Sbjct: 225 FLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 38/193 (19%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ +IDL RYG + VL G++ G I I+G +GSGKST ++ + L +P+ G II
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1157 IDNIDISTIG-------------LHDLRSRLGIIPQDPNLF----------EGTIRCNLD 1193
++ +I+ + L LR+RL ++ Q NL+ E I+
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124
Query: 1194 PLEEHSDREIWEALDKSQLGDIVRGKD-QKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252
+ +R + + L K + + +GK L S GQ+Q VS+ RAL +
Sbjct: 125 SKHDARERAL-KYLAKVGIDERAQGKYPVHL-----------SGGQQQRVSIARALAMEP 172
Query: 1253 RILVLDEATASVD 1265
+L+ DE T+++D
Sbjct: 173 DVLLFDEPTSALD 185
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 8e-18
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG--EIPKISGEVRLCGTAAYVS-----Q 522
L GIS+ V +G V++ G GSGKS+LL ILG + P G+V L G V +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKE--VDYTNEKE 75
Query: 523 SAWIQSGNI---------------EENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
+ +++ + EN++ PM + ++ L +
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIV--PM---LKMGKPKKEAKERGEYLL---SE 127
Query: 568 TIIGDRGIN----LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
+GD+ LSGG++QRV +ARAL + + D+P +D+ + I
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--IFLK 185
Query: 624 L--ANKTVIFVTHQVEFLPAADFILVLKEGRIIQ 655
+ +++ VTH+ E L +K+G+++
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ ++K +L GI+ + G+ + I+G +GSGKSTL+ L L P G++
Sbjct: 5 LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 1157 IDNIDISTIG---LHDLRSR-LGIIPQDPNLF-EGTIRCNLD-PL----EEHSDREI--W 1204
++ ++ L LR+R LG + Q L E T N+ P+ + + +
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
L + LGD + K +L S G++Q V++ RAL + +L DE T ++
Sbjct: 123 YLLSELGLGDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 1265 DTATDNLIQKIIR 1277
D+A + I
Sbjct: 172 DSANTKRVMDIFL 184
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 2e-17
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGE----IPKISGEVRLCGTA 517
++ L+ +++ R R +CG G GKS+L+ I P E R
Sbjct: 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQE-ECRTV--- 498
Query: 518 AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI-N 576
YV I + + ++L K+ I K L F D+ I I
Sbjct: 499 -YVEHD--IDGTHSDTSVLDFVFESGVGTKEAI-----KDKLIEFGFTDEMI--AMPISA 548
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636
LSGG K ++ LARA+ ++ADI LLD+P + +D Y+ T T I ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN-VAWLVNYLNT--CGITSITISHDS 605
Query: 637 EFL-PAADFILVLKEGRIIQ-AGKYDDLLQ 664
FL ++I+ + ++ + G + + ++
Sbjct: 606 VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 26/179 (14%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172
+L+ ++ GI G G GKSTL++ I N + +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMR-------------AIANGQVDGFPTQE-EC 495
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDK-SQLGDIVRGKDQKLETPVLENG 1231
R + D + LD + E DK + G D+ + P+
Sbjct: 496 RTVYVEHDIDGTHSDTSV-LDFVFESGVGTKEAIKDKLIEFGF----TDEMIAMPI---- 546
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
S G + ++L RA+L+ A IL+LDE T +DT + + T T TI+H
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVT 633
LSGGQK ++ LA +Q + +LD+P + +D + + AL VI +T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS-----LGALSKALKEFEGGVIIIT 955
Query: 634 HQVEFLPA-ADFILVLKEGRIIQ-AGKYD 660
H EF + + +K+GR+ +
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-08
Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 9/196 (4%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+++ N EF YP +S+P ++ I+ + R+AV G G+GKS+L++ + GE+ SGEV
Sbjct: 672 VKVTNMEFQ-YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 512 RLCGTA--AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTI 569
AY+ Q A+ + + + + + + +
Sbjct: 731 YTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMN 790
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTV 629
I G +R+ + + + Y + F + +M+
Sbjct: 791 K----IFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIP 846
Query: 630 I--FVTHQVEFLPAAD 643
V + + D
Sbjct: 847 RGELVESHSKMVAEVD 862
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+++ +++ +Y + I +I ++G G+GKSTLI L + P G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 1157 I 1157
Sbjct: 732 T 732
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 4e-17
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 41/215 (19%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG--EIPKISGEVRLCGTAAYVS-----Q 522
L +++ + G V++ G GSGKS++L+ I+G + P GEV + + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIK--TNDLDDDE 76
Query: 523 SAWIQSGNI---------------EENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQ 567
I+ I EN+ P+ + K+ LE
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALECL---KM 131
Query: 568 TIIGDRGIN-----LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE---LFKEY 619
+ +R N LSGGQ+QRV +ARAL + I L D P A+D+ TG + L K+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK- 190
Query: 620 IMTALANKTVIFVTHQVEFLPAADFILVLKEGRII 654
+ KTV+ VTH + + I+ LK+G +
Sbjct: 191 -LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 50/255 (19%)
Query: 1097 IELIDLKVRY--GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
++L ++ Y GE + L + G+ + I+G +GSGKST++ + L +P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1155 IIIDNIDISTIG---LHDLRSR-LGIIPQDPNLFEGT------------IRCNLDPLEEH 1198
+ IDNI + + L +R +G + Q NL EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1199 SDREIWEALDKSQLGDIVRGKDQK---LETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
R + E L ++L + R + K L S GQ+Q V++ RAL I+
Sbjct: 122 RKRAL-ECLKMAELEE--RFANHKPNQL-----------SGGQQQRVAIARALANNPPII 167
Query: 1256 VLDEATASVDTATDNLIQKIIRTEFKDC--TVCTIAHRIPTVIDSDL------VLVLSDG 1307
+ D+ T ++D+ T I ++++ ++ TV + H D ++ ++ L DG
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH------DINVARFGERIIYLKDG 221
Query: 1308 RVAEFDTPGRLLEDK 1322
V + R +D+
Sbjct: 222 EVER-EEKLRGFDDR 235
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 48/244 (19%)
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKIS 508
V I ++N + L +++ ++ G R + G G+GK++ + I G ++P +
Sbjct: 2 VRIIVKNVS-KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-T 59
Query: 509 GEVRLCGTAAYVSQSAWIQSG-----------------NIEENILFG---SPMDKAK-YK 547
GE+ + + ENI F M K + K
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 548 KVIHACSLKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLARALYQDADIYLLDDPFSA 606
+V + L++ + + LSG Q+QRV LARAL +D + LLD+PFS
Sbjct: 120 RVEEVAKI---LDI------HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 607 VDA----HTGSELFKEYIMTALANK---TVIFVTH-QVEFLPAADFILVLKEGRIIQAGK 658
+DA + + + + ++ T++ V+H + AD + VL +G+++Q GK
Sbjct: 171 LDARMRDSARALVKE------VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
Query: 659 YDDL 662
+DL
Sbjct: 225 PEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 55/271 (20%), Positives = 106/271 (39%), Gaps = 77/271 (28%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI----EPA 1151
I + ++ + + + L + G++ GI+G +G+GK+T + R+I P+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM----RIIAGLDVPS 58
Query: 1152 CGRIIIDNIDISTIGLHDLRSRLGIIPQD-------------PNLFEGTIRCNLD----- 1193
G + D+ +++ G + P+D PNL T N+
Sbjct: 59 TGELYFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNL---TAFENIAFPLTN 109
Query: 1194 ---PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250
EE + + E + ++ ++L S Q+Q V+L RAL+K
Sbjct: 110 MKMSKEEI-RKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVK 157
Query: 1251 QARILVLDEATASVDTATDNLIQKI---IRTEFKDCTVCTIAHRIP-TVI----D----- 1297
+L+LDE + NL ++ R K+ + R+ T++ D
Sbjct: 158 DPSLLLLDEPFS-------NLDARMRDSARALVKE-----VQSRLGVTLLVVSHDPADIF 205
Query: 1298 --SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
+D V VL G++ + P L ++ S+
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-13
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 14/94 (14%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDA----HTGSELFKEYIMTALANK---TV 629
LSGGQ+QRV +ARAL ++ ++ LLD+P S +DA +EL + L + T
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR------LQKELGITT 187
Query: 630 IFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
++VTH Q E L AD I V++EG I+Q G D++
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDA----HTGSELFKEYIMTALANK---TV 629
LSGGQ+QRV LARAL + + L D+P S +DA +E+ L + T
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH------LQQELGITS 187
Query: 630 IFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
++VTH Q E + A I V +G+++Q G D++
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157
E+ L V YG + GI P G+ + ++G G+GK+T + A+ L+ G+II
Sbjct: 8 EVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1158 DNIDISTIGLHDLRSRLGII--PQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGD 1214
+ DI+ H +R+GI P+ +F T+ NL +G
Sbjct: 66 NGQDITNKPAHV-INRMGIALVPEGRRIFPELTVYENL------------------MMGA 106
Query: 1215 IVRGKDQKLET---------PVLE-----NGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
R + ++ P L+ G S G++Q++++GRAL+ + ++L++DE
Sbjct: 107 YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 6e-09
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 52/227 (22%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-AYVSQSAWIQS 528
+ GI +KV RG V + G G+GK++ LS I G + G++ G +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 529 G--------------NIEENILFG--SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
G + EN++ G + DK K+ L+ LF + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR-----DLEWIFSLFP-----RLKE 131
Query: 573 R----GINLSGGQKQRVQLARALYQDADIYLLDDPFSA------VDAHTGSELFKEYIMT 622
R G LSGG++Q + + RAL + ++D+P S V E+F+ ++
Sbjct: 132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP-SLGLAPILVS-----EVFE--VIQ 183
Query: 623 AL--ANKTVIFV---THQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+ T++ V L A + VL+ G+I+ GK +LL
Sbjct: 184 KINQEGTTILLVEQNALGA--LKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 14/89 (15%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDA----HTGSELFKEYIMTALANK---TV 629
LSGGQ+QRV +ARA+ + D+ L+D+P S +DA +E+ K L K T
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK------LQQKLKVTT 195
Query: 630 IFVTH-QVEFLPAADFILVLKEGRIIQAG 657
I+VTH QVE + D I V+ G+++Q G
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 7e-12
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 14/90 (15%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA----HTGSELFKEYIMTALANK---T 628
LSGGQ+QRV L RA+ + ++L+D+P S +DA +EL K L + T
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK------LQRQLGVT 192
Query: 629 VIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
I+VTH QVE + D I V+ G + Q G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDA----HTGSELFKEYIMTALANK---TV 629
LSGGQ+QRV + R L + ++LLD+P S +DA E+ + L + T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR------LHKRLGRTM 187
Query: 630 IFVTH-QVEFLPAADFILVLKEGRIIQAGK 658
I+VTH QVE + AD I+VL GR+ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 51/239 (21%)
Query: 1112 LVLHGITCAFPG-------------GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158
L I F G I+G GSGKSTLI + ++ GR+ +
Sbjct: 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67
Query: 1159 NIDISTIGLHDLRSRLGIIP--QDPNLFEG-------------TIRCNLDPL-------- 1195
N DI+ +L GI+ Q P + L+ L
Sbjct: 68 NKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK 126
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
EE + ++ L+ +L + S GQ +LV +GRAL+ +++
Sbjct: 127 EEEMVEKAFKILEFLKLSHLYD-----------RKAGELSGGQMKLVEIGRALMTNPKMI 175
Query: 1256 VLDEATASV-DTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRV-AE 1311
V+DE A V ++ ++ + K T I HR+ V++ D + V+ +G++ AE
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 51/247 (20%), Positives = 98/247 (39%), Gaps = 50/247 (20%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLC-----GTAAYVSQSA 524
L G+S+ V++G + G GSGKS+L++ I G + G V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 525 WI----QSGNIE--------ENILFGSPMDKAKYKKVIHACSLKKD-------------- 558
I Q + EN+L G + +++ KK
Sbjct: 83 GIVRTFQ--TPQPLKEMTVLENLLIGE---ICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 559 LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
LE + + LSGGQ + V++ RAL + + ++D+P + V ++
Sbjct: 138 LEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FN 194
Query: 619 YIMTALANK--TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
+++ L K T + + H+++ L D + V+ G+II G+ ++ ++ V +
Sbjct: 195 HVL-ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN-------VLS 246
Query: 676 HHEAIEA 682
+ +E
Sbjct: 247 DPKVVEI 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 52/366 (14%), Positives = 113/366 (30%), Gaps = 102/366 (27%)
Query: 1051 WILSFCKLENKIISIER---IYQYSQIPGEAPPVIED--SRPPSSWPENGTIELID--LK 1103
+++S K E + S+ I Q ++ + + SR +L L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL------KLRQALLE 146
Query: 1104 VRYGENLPLVLHG------------------ITCAFPGGKKIGI----VGRTGSGKSTL- 1140
+R +N+ ++ G + C I + S ++ L
Sbjct: 147 LRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLE 200
Query: 1141 -IQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHS 1199
+Q L I+P D+ + +H +++ L + + C L L
Sbjct: 201 MLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENC-LLVLLNVQ 254
Query: 1200 DREIWEALD----------KSQLGDIVRGKDQK-----LETPVLENGD------NWSVGQ 1238
+ + W A + Q+ D + + L + + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDC 313
Query: 1239 R-------------QLVSLGRALLKQ--ARI-----LVLDEATASVDTATDNLIQKIIRT 1278
R + +S+ ++ A + D+ T ++++ + L R
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 1279 EFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLED--KSSMFLKLVTEYSSR 1336
F +V + IPT++ L L+ D ++ K S+ K +
Sbjct: 374 MFDRLSVFPPSAHIPTIL---LSLIWFDV---IKSDVMVVVNKLHKYSLVEK---QPKES 424
Query: 1337 SSGIPD 1342
+ IP
Sbjct: 425 TISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-08
Identities = 73/591 (12%), Positives = 162/591 (27%), Gaps = 190/591 (32%)
Query: 295 VAKVQEEYQDKLMA-----AKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFR 349
+ Q +Y+D L + + + ++ IL + + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDHIIMSKDAVSG----- 63
Query: 350 WLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLR-N 408
+FW LL Q + F ++E LR N
Sbjct: 64 -----------TLRLFW--------------TLLSKQE------EMVQKF--VEEVLRIN 90
Query: 409 FPDLVSMMAQTKV--SLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSS 466
+ L+S + + S+ Q + L D + NV S
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NV---------------S 132
Query: 467 RP----TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL---GEIPKISGEV-----RLC 514
R L +++ V + G++GSGK+ + + K+ ++ + C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 515 GTAA----------YVSQSAWIQSGNIEENILFGSPMDKAKYKKVI----HACSL----- 555
+ Y W + NI +A+ ++++ + L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 556 ---KKDLELFSHGDQTII--GDRGI--NLSGGQKQRVQL---ARALYQDADIYLL----- 600
K F+ + ++ + + LS + L + L D LL
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 601 ----DDPFSAVDAH-----TGSELFKEYIMT------ALANKTVIFVTHQVEFLPAADFI 645
D P + + +E ++ + T +K + + L A++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY- 371
Query: 646 LVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAI--EAMDIPNH-------SSEDSDEN 696
++ +D L ++ + IP SD
Sbjct: 372 ---RK-------MFDRL----------------SVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 697 LTLDGCVIPCKKCDASGDNIDNLAKEVQDGSSASEQKAIKEKKKAKRSRKKQLVQEEERV 756
+ ++ K + +K K + + + + +V
Sbjct: 406 VVVNKL---HKYSLVEKQP-KESTISIPSI-----YLELKVKLENEYALHRSIVDHYNIP 456
Query: 757 RGRVSMKV-----------YLSY-MAAAYRG---LLIPLIILAQVLFQFLQ 792
+ S + ++ + + L ++ L F+FL+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FRFLE 504
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 9e-06
Identities = 60/440 (13%), Positives = 119/440 (27%), Gaps = 161/440 (36%)
Query: 9 MLWQISQQPQLL--HSFVLLQLGVL------LVLQVCRNSDLQEPLLLEEEAGCLKVTPY 60
++ Q L VL+ GVL + L VC + +Q +
Sbjct: 136 PYLKLRQALLELRPAKNVLID-GVLGSGKTWVALDVCLSYKVQCKM-------------- 180
Query: 61 GDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKA---------LNSNW 111
D +F WLN + E L + N+ + L +
Sbjct: 181 -DFKIF------WLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 112 EKLKAENPTKTPSL--ALAILKSFWKEAALNAVFAG----LNT-----IVSYVGPYLVSY 160
+ + K+ L +L + A NA F L T + ++ ++
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 161 ------------------FVDYLGGK-ETFPHE---GYILAGIFFSAKLVETITTRQWYL 198
+ YL + + P E + + + + T +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 199 GVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWM 258
HV KL+++ + S ++V +Y
Sbjct: 349 -------HVNCD----------KLTTIIESS-----------LNVLEPAEYRKMFDR--- 377
Query: 259 LPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKLMAAKDE------ 312
L++ + I + L++ I V+ V V + + K
Sbjct: 378 --------LSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 313 ------RMRKTSECLRNM--RIL-------------KLQAWEDRY----------RIQLE 341
++ E + I+ + + D+Y I+
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 342 E----MRGV--EFRWLRKAL 355
E R V +FR+L + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI 507
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 102/682 (14%), Positives = 193/682 (28%), Gaps = 201/682 (29%)
Query: 37 CRN-SDLQEPLLLEEEAGCLKVTPYGDAGLFSLVTLSWLNPLLSIG---AKRPLELKDIP 92
C++ D+ + +L +EE + ++ +G L W LLS ++ +E
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WT--LLSKQEEMVQKFVE----- 84
Query: 93 LLAPKDRAKTNYKALNSNWEKLKAENPTKTPSLALAILKSFWKEAALNAVFAGLNTIVSY 152
+ + NYK L +K E + PS+ + + + + ++ N +
Sbjct: 85 -----EVLRINYKFL---MSPIKTEQ--RQPSM---MTRMY--IEQRDRLY---NDNQVF 126
Query: 153 VGPYLVSYFVDYLGGKETF----PHEGYILAGIFFSAK--LV------ETITTRQ----- 195
Y VS YL ++ P + ++ G+ S K + + +
Sbjct: 127 A-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 196 WYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHD 255
W +++ + + M+ KL + TS ++ + R+ L
Sbjct: 186 W---LNLKNCNSPETVLEML----QKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRR 236
Query: 256 IWMLPLQIILALAILYKNVGIASVA--------TLIAT-IISIVVTVPVAKVQEEYQDKL 306
+ L +L NV A L+ T + + A D
Sbjct: 237 LLKSK-PYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 307 MAA--KDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLR--KALYSQAFIT 362
DE + L + R L E+ R L T
Sbjct: 295 SMTLTPDEVKSLLLKYL-DCRPQDLP----------REVLTTNPRRLSIIAESIRDGLAT 343
Query: 363 FIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPL---RNFPDLVSMMAQT 419
+ W + + + + + + EP + F L
Sbjct: 344 WDNWK------------------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 420 KVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDR 479
+ +S + + +V + Y S+ V++
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVV--------------NKLHKY-----------SL-VEK 419
Query: 480 GMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGS 539
+ S+ S L K+ E L +I+
Sbjct: 420 QPK--------ESTISIPSIYLELKVKLENEYAL------------------HRSIV--- 450
Query: 540 PMDKAKYKKVIHACSLKKDLEL-------FSHGDQTIIGDRGINLSG-GQKQRVQLARAL 591
Y I DL +SH IG +L +R+ L R +
Sbjct: 451 ----DHYN--IPKTFDSDDLIPPYLDQYFYSH-----IGH---HLKNIEHPERMTLFRMV 496
Query: 592 YQD---------ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAA 642
+ D D + S ++ + +K YI K V ++FLP
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKI 555
Query: 643 DFILVLKEGRIIQAGKYDDLLQ 664
+ L+ KY DLL+
Sbjct: 556 EENLIC--------SKYTDLLR 569
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 15/135 (11%)
Query: 530 NIEENILFGSPMDKAKYKKVIHACSLKKDLELFS----HGDQTIIGDRGIN-----LSGG 580
++ + K E+ + + + G LSGG
Sbjct: 193 YKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGG 252
Query: 581 QKQRVQLA------RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634
++ + LA L + + +LD+P +D +L VI V+H
Sbjct: 253 ERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
Query: 635 QVEFLPAADFILVLK 649
E AAD ++ +
Sbjct: 313 DEELKDAADHVIRIS 327
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 531 IEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN-LSGGQKQRVQLA- 588
E + + KY +V+ ++ + +R + LSGG++ + LA
Sbjct: 15 GELASEIFAEFTEGKYSEVV----VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAF 70
Query: 589 -----RALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--TVIFVTHQVEFLPA 641
L + + +LD+P +D +L IM K VI V+H E A
Sbjct: 71 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMERYLKKIPQVILVSHDEELKDA 128
Query: 642 ADFIL 646
AD ++
Sbjct: 129 ADHVI 133
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 294 PVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLE----EMRGVEFR 349
+ K +EE Q K + D + + R L+ W R Q+E R +
Sbjct: 86 SIRKWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-- 142
Query: 350 WLRKALYSQ 358
KA Y Q
Sbjct: 143 ---KAFYQQ 148
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1343 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-70 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-59 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-67 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-53 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-67 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-58 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-63 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-51 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-61 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-53 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-59 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-50 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-34 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-28 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-33 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-32 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-32 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-32 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-28 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-27 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-28 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-28 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-27 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-27 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-25 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-22 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-18 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 8e-14 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-13 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 7e-13 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.003 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.003 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 233 bits (596), Expect = 4e-70
Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 2/240 (0%)
Query: 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
+ G I++ + +Y +N +L I + G+ + VG +G GKSTLI + R +
Sbjct: 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 1153 GRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL-DPLEEHSDREIWEALDKSQ 1211
G+I+ID +I LR+++G++ QD LF T++ N+ +D E+ EA +
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 132
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
D + Q +T V E G S GQ+Q +S+ R L IL+LDEAT+++D ++++
Sbjct: 133 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 192
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331
IQ+ + KD T +AHR+ T+ +D ++V+ +G + E T L+ K + L +
Sbjct: 193 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 203 bits (517), Expect = 2e-59
Identities = 66/255 (25%), Positives = 119/255 (46%), Gaps = 16/255 (6%)
Query: 437 EDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSL 496
++ P + I I++ F Y + P L I++ +++G VA GM G GKS+L
Sbjct: 2 KNGVGAQPIEIKQGRIDIDHVSF-QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 497 LSCILGEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENILFGSPM-D 542
++ I SG++ + G V Q + S ++ENIL G P
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 543 KAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDD 602
+ + + + G T +G+RG+ LSGGQKQR+ +AR + I +LD+
Sbjct: 121 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180
Query: 603 PFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDL 662
SA+D + S + + + ++T + V H++ + AD I+V++ G I++ G + +L
Sbjct: 181 ATSALDLESESIIQEA-LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
Query: 663 LQAGTDFNALVSAHH 677
+ + L S +
Sbjct: 240 IAKQGAYEHLYSIQN 254
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 227 bits (579), Expect = 2e-67
Identities = 91/258 (35%), Positives = 148/258 (57%)
Query: 419 TKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVD 478
T + ++ ++ F +E + + G + N F P L I++ ++
Sbjct: 1 TGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIE 60
Query: 479 RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFG 538
+G +A+ G GSGK+SLL ILGE+ G ++ G ++ SQ +WI G I+ENI+FG
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFG 120
Query: 539 SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIY 598
D+ +YK V+ AC L++D+ F+ D T++G+ G+ LSGGQ+ R+ LARA+Y+DAD+Y
Sbjct: 121 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180
Query: 599 LLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658
LLD PF +D T ++F+ + +ANKT I VT ++E L AD IL+L +G G
Sbjct: 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGT 240
Query: 659 YDDLLQAGTDFNALVSAH 676
+ +L DF++ + +
Sbjct: 241 FSELQSLRPDFSSKLMGY 258
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 184 bits (469), Expect = 7e-53
Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 20/271 (7%)
Query: 1063 ISIERIY-QYSQIPGEAPPVIEDSRPPSS-WPENGTIELIDLKVRYGENLPLVLHGITCA 1120
I +E + + + GE ++ S + + L + VL I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQD 1180
G+ + I G TGSGK++L+ + +E + G I R+ Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1181 PNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240
+ GTI+ N+ + + + QL + ++ T + E G S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1241 LVSLGRALLKQARILVLDEATASVDTAT-DNLIQKIIRTEFKDCTVCTIAHRIPTVIDSD 1299
+SL RA+ K A + +LD +D T + + + + + T + ++ + +D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1300 LVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+L+L G + T L + KL+
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLM 256
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 223 bits (571), Expect = 7e-67
Identities = 79/239 (33%), Positives = 129/239 (53%), Gaps = 3/239 (1%)
Query: 1094 NGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
G +E ++ Y L I P GK + +VGR+GSGKST+ + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1154 RIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCN--LDPLEEHSDREIWEALDKSQ 1211
I++D D+ L LR+++ ++ Q+ +LF T+ N EE+S +I EA +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
D + D L+T + ENG S GQRQ +++ RALL+ + IL+LDEAT+++DT ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1272 IQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
IQ + K+ T IAHR+ T+ +D ++V+ DG + E T LL + ++ +L
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 199 bits (507), Expect = 4e-58
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 17/240 (7%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
++ N F YP P L I++K+ G VA+ G GSGKS++ S I G
Sbjct: 13 DLEFRNVTF-TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 511 VRLCGTA-------------AYVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSL 555
+ + G A VSQ+ + + + NI + + + ++
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ +G TIIG+ G+ LSGGQ+QR+ +ARAL +D+ I +LD+ SA+D + +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675
+ N+T + + H++ + AD I+V+++G I++ G + +LL + L
Sbjct: 192 QAA-LDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 212 bits (541), Expect = 6e-63
Identities = 74/235 (31%), Positives = 128/235 (54%), Gaps = 1/235 (0%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I +++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL-DPLEEHSDREIWEALDKSQLGDI 1215
ID D++ + LR ++G++ QD L +I N+ S ++ A + D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1216 VRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI 1275
+ + T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1276 IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+ K TV IAHR+ TV ++D ++V+ G++ E LL + S++ L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 178 bits (452), Expect = 5e-51
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I N F Y S L I++ + +G + + G GSGKS+L I +G+V
Sbjct: 2 ITFRNIRF-RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 512 RLCGT-------------AAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKK 557
+ G V Q + + +I +NI +P M K
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
+ G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D + + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 618 EYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL-QAGTDFNALVSAH 676
+ +TVI + H++ + AD I+V+++G+I++ GK+ +LL + + ++ L
Sbjct: 181 N-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 677 HE 678
+
Sbjct: 240 SD 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 206 bits (526), Expect = 9e-61
Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 6/245 (2%)
Query: 1091 WPENGTIELIDLKVRYGENL-PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIE 1149
G ++ D+ Y LVL G+T G+ +VG GSGKST+ L L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1150 PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL--DPLEEHSDREIWEAL 1207
P G++++D + L ++ + Q+P +F +++ N+ ++ + EI A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
KS + G Q +T V E G S GQRQ V+L RAL+++ +L+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1268 TDNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
+ +++++ E +V I + V +D +L L G + E T +L+E K
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGC 244
Query: 1326 FLKLV 1330
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (467), Expect = 6e-53
Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 16/241 (6%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
+Q ++ F + L G++ + G A+ G GSGKS++ + + G+
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 511 VRLCGT-------------AAYVSQSAWIQSGNIEENILFGSPMDKAKYK--KVIHACSL 555
+ L G A V Q + +++ENI +G +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+ G T + + G LSGGQ+Q V LARAL + + +LDD SA+DA++ ++
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 616 FKEYI-MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
+ +++V+ +T + + AD IL L+ G I + G + L++ + A+V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 675 A 675
A
Sbjct: 251 A 251
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 201 bits (513), Expect = 4e-59
Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 4/238 (1%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ + Y ++ +L I+ I G +G GKST+ L R +P G I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLD--PLEEHSDREIWEALDKSQLGD 1214
ID I I L + RS++G + QD + GTIR NL +++D ++W+ LD +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
V +L T V E G S GQRQ +++ RA L+ +IL+LDEATAS+D+ +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1275 IIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332
+ + K T IAHR+ T++D+D + + G++ L+ ++ K V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 177 bits (450), Expect = 1e-50
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 18/238 (7%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+ + +F Y S L IS + +A G G GKS++ S + +GE+
Sbjct: 2 LSARHVDFA-YDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 512 RLCGTA-------------AYVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSLK 556
+ G +VSQ + I +G I EN+ +G +V+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELF 616
+E T +G+RG+ +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 617 KEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
K + + + +T + + H++ + AD I +++G+I +GK+++L+ + VS
Sbjct: 180 K-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 130 bits (329), Expect = 3e-34
Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 38/257 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ +IDL RYG + VL G++ G I I+G +GSGKST ++ + L +P+ G II
Sbjct: 3 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1157 IDNIDISTIGLHD-------------LRSRLGIIPQDPNLF----------EGTIRCNLD 1193
++ +I+ + D LR+RL ++ Q NL+ E I+
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 1194 PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR 1253
+ +R + L K + + +GK P + S GQ+Q VS+ RAL +
Sbjct: 121 SKHDARER-ALKYLAKVGIDERAQGK-----YP-----VHLSGGQQQRVSIARALAMEPD 169
Query: 1254 ILVLDEATASVDTATDNLIQKIIRTEFK-DCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311
+L+ DE T+++D + +I++ + T+ + H + S V+ L G++ E
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 1312 FDTPGRLLEDKSSMFLK 1328
P ++ + S L+
Sbjct: 230 EGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 111 bits (280), Expect = 8e-28
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+ + + Y L G+S++ G +++ G GSGKS+ L CI G +
Sbjct: 3 LHVIDLHK-RY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 512 RLCGTA--------------------------AYVSQS-AWIQSGNIEENILFGSPMDKA 544
+ G V Q + EN++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 545 KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPF 604
K +LK L ++ G ++LSGGQ+QRV +ARAL + D+ L D+P
Sbjct: 120 LSKHDARERALKY-LAKVGIDER-AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 605 SAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663
SA+D E+ + A KT++ VTH++ F + ++ L +G+I + G + +
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 126 bits (317), Expect = 6e-33
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 27/248 (10%)
Query: 1097 IELIDLKVRYGENLPLV--LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
I+L ++ + + + L+ ++ P G+ G++G +G+GKSTLI+ + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1155 IIIDNIDISTIGLHD---LRSRLGIIPQDPNLF-EGTIRCNLD-PLEEH------SDREI 1203
+++D +++T+ + R ++G+I Q NL T+ N+ PLE R +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
E L LGD L S GQ+Q V++ RAL ++L+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1264 VDTATDNLIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320
+D AT I ++++ T+ I H + V D V V+S+G + E DT +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1321 DKSSMFLK 1328
+ +
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 1e-26
Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 40/241 (16%)
Query: 452 IQIENAEFCWYPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I++ N + +R L+ +S+ V G V G G+GKS+L+ C+ G
Sbjct: 2 IKLSNITK-VFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 510 EVRLCGT-----------------AAYVSQSAWIQSGNIEENILF-----GSPMDKAKYK 547
V + G + S + N+ +P D+ K +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 548 --KVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFS 605
+++ L + + NLSGGQKQRV +ARAL + + L D+ S
Sbjct: 121 VTELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 606 AVDAHTGSELFKEYI-MTALANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLL 663
A+D T + + + T++ +TH+++ D + V+ G +I+ ++
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229
Query: 664 Q 664
Sbjct: 230 S 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 124 bits (314), Expect = 1e-32
Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 17/232 (7%)
Query: 1097 IELIDLKVRY--GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
I+L ++ Y GE + L + G+ + I+G +GSGKST++ + L +P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1155 IIIDNIDISTIGLHDL----RSRLGIIPQDPNLFEG-TIRCNLD---PLEEHSDREIWEA 1206
+ IDNI + + +L R ++G + Q NL T N++ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1207 LDK-SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
+ + + +++ + S GQ+Q V++ RAL I++ D+ T ++D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1266 TATDNLIQKIIRTEFKD--CTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315
+ T I ++++ ++ TV + H I + ++ L DG V +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 123 bits (310), Expect = 4e-32
Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 36/235 (15%)
Query: 452 IQIENAEFCWYPSSSRPT--LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I+++N Y L +++ + G V++ G GSGKS++L+ I G
Sbjct: 2 IKLKNVTK-TYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 510 EVRLCGTA-----------------AYVSQSAW-IQSGNIEENILFGSPMDKAKYKKVIH 551
EV + +V Q I EN+ P+ +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSG 118
Query: 552 ACSLKKDLELFSHGDQTIIGDRGIN-----LSGGQKQRVQLARALYQDADIYLLDDPFSA 606
K+ LE + +R N LSGGQ+QRV +ARAL + I L D P A
Sbjct: 119 EERRKRALECL---KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 607 VDAHTGSELFKEYIMTALA---NKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658
+D+ TG ++ + + L KTV+ VTH + + I+ LK+G + + K
Sbjct: 176 LDSKTGEKIMQL--LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 124 bits (312), Expect = 3e-32
Identities = 46/243 (18%), Positives = 109/243 (44%), Gaps = 26/243 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
++L +L R+G ++ + G+ + ++G +G GK+T ++ + L EP GRI
Sbjct: 7 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHS-------DREIWEALD 1208
+ D++ L + ++ Q ++ T+ N+ + D+ + A +
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
Q+ +++ +L S GQRQ V++ RA++ + +L++DE +++D
Sbjct: 123 LLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1269 DNLIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
++ I+ + T + H + D + V++ G++ + +P + +S+
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSV 231
Query: 1326 FLK 1328
F+
Sbjct: 232 FVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 119 bits (301), Expect = 9e-31
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 21/229 (9%)
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
V +++EN + + ++ +++ + G + + G G GK++ L I G G
Sbjct: 5 VEVKLENLTK-RFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 61
Query: 510 EVRLCGTA-----------AYVSQSAWIQSG-NIEENILFGSPMDKAKYKKVIHACSLKK 557
+ + V QS + + ENI F P+ K+ K ++
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAF--PLKIKKFPKDEIDKRVRW 119
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
EL + ++ LSGGQ+QRV +ARA+ + D+ L+D+P S +DA +
Sbjct: 120 AAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 177
Query: 618 EYI-MTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
E + T I+VTH D I V+ G+++Q G ++
Sbjct: 178 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 120 bits (303), Expect = 4e-31
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 23/234 (9%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
++++ +++++ +Y + + GI +KV RG V + G G+GK++ LS I G +
Sbjct: 2 VSDIVLEVQSLHV-YYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 507 ISGEVRLC---------------GTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIH 551
G++ G A + EN++ G+ K K
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI--- 115
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
L+ LF + + G LSGG++Q + + RAL + ++D+P +
Sbjct: 116 KRDLEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 612 GSELFKEYIMTALANKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQ 664
SE+F+ T++ V L A + VL+ G+I+ GK +LL
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (272), Expect = 5e-27
Identities = 46/229 (20%), Positives = 101/229 (44%), Gaps = 10/229 (4%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ L V YG + GI P G+ + ++G G+GK+T + A+ L+ G+II
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1157 IDNIDISTIGLHDLRSR-LGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGD 1214
+ DI+ H + + ++P+ +F T+ NL + + D +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD-TATDNLIQ 1273
+ ++L+ S G++Q++++GRAL+ + ++L++DE + + + +
Sbjct: 125 LFPRLKERLKQLG----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321
I + + T+ + + + VL G++ LL++
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (293), Expect = 1e-29
Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 32/239 (13%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------- 516
L G+S+ V++G + G GSGKS+L++ I G + G V
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 517 -AAYVSQSAW-IQSGNIEENILFG------SPMDKAKYKKVI--HACSLKKDLELFSHGD 566
Q+ ++ + EN+L G SP++ YKK I ++K ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 567 QTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
+ + DR LSGGQ + V++ RAL + + ++D+P + V ++F +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 626 NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAM 683
T + + H+++ + D + V+ G+II G+ ++ ++ V + + +E
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN-------VLSDPKVVEIY 251
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 7e-27
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 15/238 (6%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ ++ +GE L G++ + G I+G GSGKSTLI + ++ GR+
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1157 IDNIDISTIGLHDL-RSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLG- 1213
+N DI+ +L + Q P + T+ NL E +L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1214 ---DIVRGKDQKLETPVLEN-----GDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
++V + LE L + S GQ +LV +GRAL+ +++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1266 -TATDNLIQKIIRTEFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321
++ ++ + K T I HR+ V++ D + V+ +G++ +++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 114 bits (287), Expect = 4e-29
Identities = 39/236 (16%), Positives = 83/236 (35%), Gaps = 28/236 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
++L D+ L ++ G+ + +VG G+GKSTL+ + + G I
Sbjct: 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNL-FEGTIRCNL-DPLEEHSDREIWEALDKSQLGD 1214
+ L + Q F + L + + E+ + +
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA-------RILVLDEATASVDTA 1267
L+ + + + S G+ Q V L +L+ ++L+LDE S+D A
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1268 TDNLIQKIIRT-EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321
+ + KI+ + + +H + + + +L G++ +L
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 110 bits (275), Expect = 2e-27
Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 21/230 (9%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
++ +Q+++ + L +S +V G + + G G+GKS+LL+ + G
Sbjct: 1 SIVMQLQDV-------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-K 52
Query: 509 GEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSH---- 564
G ++ G + + + P + + K EL +
Sbjct: 53 GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA 112
Query: 565 -GDQTIIGDRGINLSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAHTGSELF 616
+G LSGG+ QRV+LA + Q + LLD+P +++D S L
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172
Query: 617 KEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665
K ++ +H + A +LK G+++ +G+ +++L
Sbjct: 173 KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 112 bits (280), Expect = 4e-28
Identities = 46/237 (19%), Positives = 107/237 (45%), Gaps = 10/237 (4%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G + + DL+ R G+ +L GI+ G+ G++G G+GK+T ++ + LI+P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1155 IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLG 1213
+ + ++ H++R + +P++ + L + E + +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
+ G +K++ V +S G + + + RAL+ R+ +LDE T+ +D ++
Sbjct: 118 TEIAGLGEKIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVID--SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328
KI++ ++ ++ ++ D + ++ +G + E T L E + ++
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIE 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 108 bits (270), Expect = 9e-27
Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 21/228 (9%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
A+ +++ + L GIS +++ G + G G+GK++ L I I SG
Sbjct: 2 AVVVKDLRK-RI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 511 VRLCGTA------------AYVSQSAWIQSG-NIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G +Y+ + A E + F + + ++ +++
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM--VER 116
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
E+ G++ I DR S G +++ +ARAL + + +LD+P S +D E+ K
Sbjct: 117 ATEIAGLGEK--IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 174
Query: 618 EYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
+ T++ +H + + D I ++ G I++ G ++L +
Sbjct: 175 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 111 bits (278), Expect = 8e-28
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 16/211 (7%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------AAYVSQ 522
+ +S++V G + + G G GK++ L I G G++ + +V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 523 SAWIQSGNIEENILF------GSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN 576
+ + L+ + K +KV ++ E+ T + +R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 577 -LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTH 634
LSGGQ+QRV L RA+ + ++L+D+P S +DA + E T I+VTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 635 QVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
D I V+ G + Q G D++
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 110 bits (276), Expect = 2e-27
Identities = 41/241 (17%), Positives = 104/241 (43%), Gaps = 16/241 (6%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+ L+D+ +GE + ++ G+ + ++G +G GK+T ++ + L EP+ G+I
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1157 IDNIDISTIGLHDLR----SRLGIIPQDPNLFEGTIRC-NLDPLEEHSDREIWEALDK-S 1210
I + ++ + ++ Q L+ N+ + E +
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
++ +++ + P S GQRQ V+LGRA++++ ++ ++DE +++D
Sbjct: 122 EVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 1271 LIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
++ ++ T + H + D + V++ G + + +P + + ++ F+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236
Query: 1328 K 1328
Sbjct: 237 A 237
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 9e-28
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 26/243 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
++L ++ +GE + V I G+ + VG +G GKSTL++ + L G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEGTI--------RCNLDPLEEHSDREIWEALD 1208
I ++ +G++ Q L+ +E ++ + + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
QL ++ K + L S GQRQ V++GR L+ + + +LDE +++D A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1269 DNLIQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
++ I + T+ + H + +D ++VL GRVA+ P L +
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225
Query: 1326 FLK 1328
F+
Sbjct: 226 FVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 3e-26
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 21/227 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+Q++N + I++ + G V G G GKS+LL I G SG++
Sbjct: 1 VQLQNVTK-AW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 512 RLCGTA-----------AYVSQSAWIQSG-NIEENILFGSPMDKAKYKKVIHACSLKKDL 559
+ V QS + ++ EN+ F + A KK + + +
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF--GLKLAGAKKEVINQRVNQVA 115
Query: 560 ELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY 619
E+ ++ + LSGGQ+QRV + R L + ++LLD+P S +DA ++ E
Sbjct: 116 EVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 620 I-MTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
+ +T+I+VTH AD I+VL GR+ Q GK +L
Sbjct: 174 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 108 bits (271), Expect = 3e-27
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
+E+ DL V Y + VL IT G + G G GK+TL++ + ++P G II
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEH-----SDREIWEALDKS 1210
+ + I ++ ++ +P++ + ++ L + + EI +AL+
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
++ D+ + S G + V L LL A I VLD+ ++D + +
Sbjct: 115 EVLDLKK------------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 1271 LIQKIIRTEFKDCTVCTIAHR 1291
+ K I K+ + I+ R
Sbjct: 163 KVLKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 104 bits (261), Expect = 6e-26
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 26/210 (12%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
++I + +P L I+M +++G V G G GK++LL I + + GE+
Sbjct: 3 LEIRDLSV----GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 512 RLCGT--------AAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELF 562
G ++ + + ++E+ + + + K K + LE
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK----NEIMDALESV 114
Query: 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
D + LS G +RVQLA L +A+IY+LDDP A+D + ++ K I+
Sbjct: 115 EVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 623 ALANK--TVIFVTHQVEFLPAADFILVLKE 650
L K +I ++ + D L +
Sbjct: 171 ILKEKGIVIISSREELSY---CDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 108 bits (270), Expect = 7e-27
Identities = 47/240 (19%), Positives = 100/240 (41%), Gaps = 24/240 (10%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
IE+ L ++ L ++ G+ I+G TG+GK+ ++ + P GRI+
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1157 IDNIDISTIGLHDLRSRLGIIPQDPNLFEG-----TIRCNLDPLEEHSDREIWEALDKSQ 1211
+D D++ L + + + Q+ +LF + + + + + + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1212 LGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
+ ++ L S G++Q V+L RAL+ +IL+LDE +++D T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1272 IQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328
++++ + TV I H +D + V+ DG++ + P + E +
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 103 bits (257), Expect = 3e-25
Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 21/209 (10%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AA 518
L +S+KV+ G + G G+GK+ L I G SG + L G A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 519 YVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577
+V Q+ + N+++N+ FG M K K K + +DL++ D+ + L
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD--TARDLKIEHLLDR-----NPLTL 128
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI-MTALANKTVIFVTHQV 636
SGG++QRV LARAL + I LLD+P SA+D T + + TV+ +TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 637 EF-LPAADFILVLKEGRIIQAGKYDDLLQ 664
AD I V+ +G++IQ GK +++ +
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 101 bits (253), Expect = 1e-24
Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 30/237 (12%)
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
V I ++N + L +++ ++ G R + G G+GK++ + I G +G
Sbjct: 2 VRIIVKNVSK-VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
Query: 510 EVRLCGTA----------------AYVSQSA----WIQSGNIEENILFGSPMDKAKYKKV 549
E+ V Q+ + + L M K + +K
Sbjct: 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 550 IHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
+ + D+ + LSG Q+QRV LARAL +D + LLD+PFS +DA
Sbjct: 121 VEEVAKILDIHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 610 HTGSELFKEYI-MTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQ 664
+ + T++ V+H + A AD + VL +G+++Q GK +DL
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 100 bits (249), Expect = 6e-24
Identities = 48/240 (20%), Positives = 106/240 (44%), Gaps = 13/240 (5%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156
I + ++ + + + L + G++ GI+G +G+GK+T ++ + L P+ G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1157 IDNIDISTIGLHDLRSR---LGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLG 1213
D+ +++ G + +G++ Q L+ NL E + + K ++
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALY-----PNLTAFENIAFPLTNMKMSKEEIR 118
Query: 1214 DIVR--GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNL 1271
V K + + S Q+Q V+L RAL+K +L+LDE +++D +
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 1272 IQKIIRT--EFKDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLK 1328
+ +++ T+ ++H + +D V VL G++ + P L ++ S+ +
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVA 238
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.4 bits (242), Expect = 5e-23
Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 21/213 (9%)
Query: 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-----------AYVS 521
+ ++ R + G G+GKS L I G + GEVRL G +V
Sbjct: 18 VDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 522 QS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGG 580
Q A ++ NI +G + + +++ E ++ + LSGG
Sbjct: 77 QDYALFPHLSVYRNIAYGLRNVERVERD----RRVREMAEKLGIAH--LLDRKPARLSGG 130
Query: 581 QKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQVEFL 639
++QRV LARAL + LLD+P SAVD T L +E + ++ VTH +
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190
Query: 640 PA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
AD + V+ GRI++ GK +L A A
Sbjct: 191 AMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 96.2 bits (239), Expect = 1e-22
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)
Query: 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPN 1182
G ++G TG+GKS ++ + +++P G + ++ DI+ L R +G +PQD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYA 80
Query: 1183 LFEGTIRC--NLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240
LF L E + ++ + + P S G+RQ
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVR--EMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRT--EFKDCTVCTIAHRIPTVID- 1297
V+L RAL+ Q R+L+LDE ++VD T ++ + +R D + + H +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 1298 SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324
+D V V+ +GR+ E L K+
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNG 220
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 81.6 bits (200), Expect = 3e-18
Identities = 22/186 (11%), Positives = 48/186 (25%), Gaps = 18/186 (9%)
Query: 481 MRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSP 540
M++ + G G GK++L+ I+ + K + ++G
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP---ETKKRTGFRIITTEGKKK 57
Query: 541 MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLL 600
+ +K+ + + A + ++
Sbjct: 58 IFSSKFFTSKKLV------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 601 DDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGK-- 658
D+ IM N V+ + P I L +I+
Sbjct: 106 DEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
Query: 659 YDDLLQ 664
D +L+
Sbjct: 165 RDVILE 170
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.3 bits (194), Expect = 2e-17
Identities = 17/192 (8%), Positives = 40/192 (20%), Gaps = 28/192 (14%)
Query: 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFE 1185
KI I G G GK+TL++ + + + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1186 GTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245
+ + +E +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLS 1305
A + +++++DE + + V + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1306 DGRVAEFDTPGR 1317
+ E R
Sbjct: 154 GAVLIELTPENR 165
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 71.9 bits (174), Expect = 8e-14
Identities = 33/310 (10%), Positives = 89/310 (28%), Gaps = 2/310 (0%)
Query: 127 LAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAK 186
+ F + + LN L+ +D GK ++ +
Sbjct: 8 WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 67
Query: 187 LVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRV 246
L + Y + G V + + + + T + Q
Sbjct: 68 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 127
Query: 247 GDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQEEYQDKL 306
S L + II +++ S+ ++ I + V+K +
Sbjct: 128 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 187
Query: 307 MAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFIFW 366
+ + L+ + + + ++ + +++ K + + + I
Sbjct: 188 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 247
Query: 367 SSPIF--VAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLD 424
+ + + LTAG++ ++ L PL++ ++ + + +
Sbjct: 248 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 307
Query: 425 RISGFLQEEE 434
+ L E+
Sbjct: 308 TLFAILDSEQ 317
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (167), Expect = 1e-13
Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 7/179 (3%)
Query: 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLF 1184
+ + + G G GK+TLI +++ + + + G + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1185 EGTIRCNLDPL------EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQ 1238
+ D +E L L + V++ +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID 1297
+ + R L ++L L+++I + T +R + D
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLPD 179
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 69.2 bits (167), Expect = 7e-13
Identities = 46/317 (14%), Positives = 101/317 (31%), Gaps = 9/317 (2%)
Query: 127 LAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEG-------YILA 179
L +K + + + + + P L+ Y +D + + I
Sbjct: 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGI 65
Query: 180 GIFFSAKLVETITTRQWYLGVDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYM 239
+F + I + YL + + + + I +
Sbjct: 66 ALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVI 125
Query: 240 AVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGIASVATLIATIISIVVTVPVAKVQ 299
Q L +IW+ + II+AL+I++ ++A L I+
Sbjct: 126 NDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRL 185
Query: 300 EEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQA 359
+ + A E E ++ + ++K A ED ++ K A
Sbjct: 186 RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245
Query: 360 --FITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMA 417
F + + + G + + +T G++ + + +L PLR + +
Sbjct: 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLT 305
Query: 418 QTKVSLDRISGFLQEEE 434
Q+ S+DR+ + E+
Sbjct: 306 QSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 45/318 (14%), Positives = 102/318 (32%), Gaps = 10/318 (3%)
Query: 762 MKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWA-------NPQTEGDQPKVN 814
+K YL ++ Y+ + I+ ++ + + + +A + T ++
Sbjct: 2 IKRYLQFVKP-YKYRIF-ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 815 PMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGR 874
+ + + F+R L + K+ + F+ + G+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 875 ILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQK 934
+++RV D I L I ++ + +M + ++ L + + +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 935 YYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFC 994
+ R+L R S + + E + G S ++ F E K F
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 995 SLAAIEWLCLRMELLSTFVFAFCMVLLVSF-PHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
+ + ++ + + G+I V Y L L R +
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299
Query: 1054 SFCKLENKIISIERIYQY 1071
SF L S++R++Q
Sbjct: 300 SFTTLTQSFASMDRVFQL 317
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.002
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 536 LFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI------NLSGGQKQRVQL-- 587
L +P + + +++ + E F+ G + LSGG+K L
Sbjct: 286 LTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALAL 345
Query: 588 --ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAAD-F 644
A YQ + ++LD+ +A+D + + I ++ + +D
Sbjct: 346 LFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDAL 405
Query: 645 ILVLKEGR 652
+ V ++ +
Sbjct: 406 VGVYRQQQ 413
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.003
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD 1169
+ +G+GK+TL++ L + R + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.5 bits (86), Expect = 0.003
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 10/120 (8%)
Query: 1125 KKIGIVGRTGSGKSTLIQALFR----------LIEPACGRIIIDNIDISTIGLHDLRSRL 1174
+VG SGK+TL++ ++ + H+ +
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAV 61
Query: 1175 GIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNW 1234
+ L + +R L L++ LD + + + K+ E
Sbjct: 62 ATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWAS 121
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.7 bits (86), Expect = 0.004
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
++ ++VA+ G GKS+L + IL + +
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP 38
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1343 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.56 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.43 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.33 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.27 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.07 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.83 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.74 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.49 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.28 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.09 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.07 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.87 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.77 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.75 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.56 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.42 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.21 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.98 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.83 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.71 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.68 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.67 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.31 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.3 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.3 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.26 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.22 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.17 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.12 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.11 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.03 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.97 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.97 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.96 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.91 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.62 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.59 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.49 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.48 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.43 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.43 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.41 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.37 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.34 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.28 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.27 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.24 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.21 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.19 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.17 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.15 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.98 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.88 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.85 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.85 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.79 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.76 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.69 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.67 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.65 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.57 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.47 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.43 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.33 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.27 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.25 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.23 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.23 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.19 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.13 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.12 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.07 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.06 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.05 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.0 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.92 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.89 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.82 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.8 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.77 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.67 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.54 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.52 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.43 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.42 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.39 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.37 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.36 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.18 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.04 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.02 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.01 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.96 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.95 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.95 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.92 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.85 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.73 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.68 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.46 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.37 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.36 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.27 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.27 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.26 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.2 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.15 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.07 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.07 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.04 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.95 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.93 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.92 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.9 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.82 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.8 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 90.76 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.71 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.69 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.64 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.58 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.52 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.5 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.41 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.36 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.31 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.29 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.24 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.23 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.13 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.12 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.1 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.09 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.01 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.0 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.93 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.93 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.91 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.86 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.83 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.82 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.78 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.76 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.75 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.75 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.71 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.65 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.57 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.52 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.4 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.4 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.3 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.27 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.24 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.18 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.09 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.99 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.78 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.78 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.74 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.68 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.67 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.64 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.58 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.55 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 88.41 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.29 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.23 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.23 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 88.19 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.17 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.16 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.09 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.03 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.02 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.93 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.9 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.89 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.86 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.77 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.75 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.75 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.75 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.67 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.63 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.61 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.59 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 87.58 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.56 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.53 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.41 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.4 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.34 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.33 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.29 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.25 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.24 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.16 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 87.13 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.11 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.01 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.98 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 86.97 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 86.88 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.84 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 86.83 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.81 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.81 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.81 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.74 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.7 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.68 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.65 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.61 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 86.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.51 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.44 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.44 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.43 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.35 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.35 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.34 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.14 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 86.12 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.08 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.96 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 85.92 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.92 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.88 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.81 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.78 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.74 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.74 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.68 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.58 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 85.58 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.56 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.54 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.49 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.46 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.42 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.41 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.39 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 85.32 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 85.3 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.29 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.28 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.27 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.17 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.12 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 85.11 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.08 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.06 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.05 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.02 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.02 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.96 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.87 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.85 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.83 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.77 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.75 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.7 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.67 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.56 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.54 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 84.54 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.47 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.46 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.43 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.41 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.41 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.16 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.08 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 83.98 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.93 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.77 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.64 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.62 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.43 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.35 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.3 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.3 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.18 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.15 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 83.13 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.0 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 82.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.92 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 82.85 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 82.85 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.79 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.77 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.7 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.69 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 82.58 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.55 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.47 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 82.45 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.2 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.2 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.06 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 81.98 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.92 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 81.79 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.77 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.69 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.68 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 81.68 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.58 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.53 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 81.52 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.51 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 81.42 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.39 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.38 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.27 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.16 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.12 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.78 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.57 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 80.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.48 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.27 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 80.27 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 80.27 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 80.22 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.18 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=499.50 Aligned_cols=239 Identities=31% Similarity=0.479 Sum_probs=231.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08998899997689984100101684299799999599998889999983124798636999273069999678852050
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|++.++.+.+|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 655776436775443069899-8999999999998599347830148877423349988891388999999998349987
Q 000702 1176 IIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1176 iIpQdp~LF~gTIr~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~I 1254 (1343)
||||+|.+|++||++|+..+. ..++++++++++.+++.+++..+|.|+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
Q ss_conf 99837887999898999999999736993799860483100135789999598796624925775059927999999841
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1255 LiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~~~~~ 1334 (1343)
||||||||+||+.|+..|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|++++++.|++|++.+.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998299878999999813
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=498.50 Aligned_cols=241 Identities=30% Similarity=0.468 Sum_probs=231.4
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99860899889999768998410010168429979999959999888999998312479863699927306999967885
Q 000702 1092 PENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLR 1171 (1343)
Q Consensus 1092 p~~g~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR 1171 (1343)
..+|.|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 205065577643677544306989-9899999999999859934783014887742334998889138899999999834
Q 000702 1172 SRLGIIPQDPNLFEGTIRCNLDPL-EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1172 ~~i~iIpQdp~LF~gTIr~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~ 1250 (1343)
++++||||+|.+|++|||+||..+ +..+|+++++|++.+++.+++..+|+||||.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99879983788799989899999999973699379986048310013578999959879662492577505992799999
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1251 ~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~ 1330 (1343)
+|+|||||||||+||++|+..|.+.|++..+++|+|+||||++++..||||++|++|+|+|.|+|+||+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred HHH
Q ss_conf 984
Q 000702 1331 TEY 1333 (1343)
Q Consensus 1331 ~~~ 1333 (1343)
+.+
T Consensus 251 ~~Q 253 (255)
T d2hyda1 251 SIQ 253 (255)
T ss_dssp TTT
T ss_pred HHC
T ss_conf 974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=488.37 Aligned_cols=241 Identities=33% Similarity=0.478 Sum_probs=230.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 98608998899997689984100101684299799999599998889999983124798636999273069999678852
Q 000702 1093 ENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS 1172 (1343)
Q Consensus 1093 ~~g~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~ 1172 (1343)
..|.|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+.+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 05065577643677544306989--9899999999999859934783014887742334998889138899999999834
Q 000702 1173 RLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1173 ~i~iIpQdp~LF~gTIr~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~ 1250 (1343)
+++|+||+|.+|++|+++|+..+ ...+++++++|++.+++.+++..+|.|||+.++++|.+||||||||+|||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99879983788799989899999999973699379986048310013578999959879662492577505992799999
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1251 ~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~ 1330 (1343)
+|+|||||||||++|++|+..|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HHHC
Q ss_conf 9841
Q 000702 1331 TEYS 1334 (1343)
Q Consensus 1331 ~~~~ 1334 (1343)
+.+.
T Consensus 249 ~~Q~ 252 (253)
T d3b60a1 249 KMQF 252 (253)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 9725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=477.20 Aligned_cols=240 Identities=28% Similarity=0.425 Sum_probs=226.0
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 998608998899997689-9841001016842997999995999988899999831247986369992730699996788
Q 000702 1092 PENGTIELIDLKVRYGEN-LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL 1170 (1343)
Q Consensus 1092 p~~g~I~f~nvs~~Y~~~-~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~L 1170 (1343)
+.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5205065577643677544306989--98999999999998599347830148877423349988891388999999998
Q 000702 1171 RSRLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1171 R~~i~iIpQdp~LF~gTIr~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAl 1248 (1343)
|+++++|||+|.+|++||++|+..+ ...++.+++++++.+++.+++..+|.|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 349987998378879998989999999997369--937998604831001357899995987966249257750599279
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1249 L~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f 1326 (1343)
+++|+|+|||||||++|+.|+..|++.|++..+ ++|+|+||||++++..||||+||++|+|+|.|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000702 1327 LKLVTE 1332 (1343)
Q Consensus 1327 ~~l~~~ 1332 (1343)
++|+++
T Consensus 246 ~~l~~A 251 (251)
T d1jj7a_ 246 WAMVQA 251 (251)
T ss_dssp HHHHCC
T ss_pred HHHHCC
T ss_conf 999629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=482.84 Aligned_cols=236 Identities=32% Similarity=0.530 Sum_probs=226.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89988999976899841001016842997999995999988899999831247986369992730699996788520506
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++||+|+|+++ +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 5577643677544306989--98999999999998599347830148877423349988891388999999998349987
Q 000702 1177 IPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1177 IpQdp~LF~gTIr~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~I 1254 (1343)
|||+|.+|++|||+|+... ...++++++++++.+++.+++..+|.++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
Q ss_conf 99837887999898999999999736993799860483100135789999598796624925775059927999999841
Q 000702 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334 (1343)
Q Consensus 1255 LiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~~~~~ 1334 (1343)
||||||||++|+.++..|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|+||+++ ++.|++|++++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q~ 239 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQL 239 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCCC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-969999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=421.91 Aligned_cols=226 Identities=28% Similarity=0.479 Sum_probs=211.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 74219998338982599999930260358419809999938998889999999658657774899879------------
Q 000702 448 TNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------ 515 (1343)
Q Consensus 448 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g------------ 515 (1343)
..+.|+++|++|+|+. ..+++|+|+||++++|++++|+|++|||||||+++|+|.++|++|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECC-CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 7887999988999599-997606443899839989999889998099999999712786300015399875307888863
Q ss_pred -EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -2899826665668658898613999-99889999999960342683502898531378988778189999999998506
Q 000702 516 -TAAYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593 (1343)
Q Consensus 516 -~i~yv~Q~~~l~~~ti~~NI~fg~~-~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~ 593 (1343)
.++||+|+|++|++||+|||.||.+ .++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99889880888887988899999999978529958999805999624598899993996989049688972186379999
Q 000702 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALV 673 (1343)
Q Consensus 594 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~ 673 (1343)
+|+|+|||||||+||++++..+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.+++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998999837654479779999999-9998753888999968999998599999998999999889999986884999999
Q ss_pred HH
Q ss_conf 98
Q 000702 674 SA 675 (1343)
Q Consensus 674 ~~ 675 (1343)
..
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=416.50 Aligned_cols=224 Identities=28% Similarity=0.457 Sum_probs=209.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 19998338982599999930260358419809999938998889999999658657774899879-------------28
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TA 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g-------------~i 517 (1343)
.|+|+|++|+|++ +.+++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 eI~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECC-CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 9299999999089-996037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99826665668658898613999-99889999999960342683502898531378988778189999999998506998
Q 000702 518 AYVSQSAWIQSGNIEENILFGSP-MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 518 ~yv~Q~~~l~~~ti~~NI~fg~~-~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~ 596 (1343)
+||+|+|++|++||+|||.++.+ .+.+++.++++.|.+.+++..+|.|++|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHH
Q ss_conf 898808888879888999999999785299589998059996245988999939969890496889721-8637999998
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQA-GTDFNALVSA 675 (1343)
Q Consensus 597 illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 675 (1343)
|+|||||||+||+.+++.+++. +....+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++. ++.|.+++..
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999-999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 7
Q 000702 676 H 676 (1343)
Q Consensus 676 ~ 676 (1343)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=413.28 Aligned_cols=226 Identities=27% Similarity=0.437 Sum_probs=211.6
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 4219998338982599999930260358419809999938998889999999658657774899879-------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------------- 515 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g------------- 515 (1343)
.+.|+++|++|+|+. .+.++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 11 ~g~I~~~nvsf~Y~~-~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECC-CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 307999988999299-9976353328998599999999999985999999986216888468987880121110665420
Q ss_pred EEEEECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2899826665668658898613999--99889999999960342683502898531378988778189999999998506
Q 000702 516 TAAYVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593 (1343)
Q Consensus 516 ~i~yv~Q~~~l~~~ti~~NI~fg~~--~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~ 593 (1343)
.++|++|+|++|++|+++|+.+|.+ .+++++.++++.|++.++++.+|+|++|.++++|.+|||||||||+||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99889880888887988899999999978529958999805999624598899993996989049688972186379999
Q 000702 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALV 673 (1343)
Q Consensus 594 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~ 673 (1343)
+|+|+|||||||+||+.+++.+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++++.|.+++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998899516444589889999999-9987522788999988799998599999998999999889999986893999999
Q ss_pred HHH
Q ss_conf 987
Q 000702 674 SAH 676 (1343)
Q Consensus 674 ~~~ 676 (1343)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=406.69 Aligned_cols=225 Identities=25% Similarity=0.383 Sum_probs=205.8
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 42199983389825999999302603584198099999389988899999996586577748998792------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------ 516 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~------------ 516 (1343)
++.|+++|++|+|+...+.++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred -EEEECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -899826665668658898613999--99889999999960342683502898531378988778189999999998506
Q 000702 517 -AAYVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593 (1343)
Q Consensus 517 -i~yv~Q~~~l~~~ti~~NI~fg~~--~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~ 593 (1343)
++||+|+|++|++||+|||.+|.. .+..+..+..+.+++...+..+|+|++|.++++|.+|||||||||+||||+++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9988988088888798889999999997852--99589998059996245988999939969890496889721863799
Q 000702 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671 (1343)
Q Consensus 594 ~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 671 (1343)
+|+|+|||||||+||++++..+++. +.... .++|+|+|||+++.+..||+|++|++|+|+++|+++|+++.++.|..
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 8707871675765685368999999-999765069899999597999985999999989999998899999859758899
Q ss_pred HHH
Q ss_conf 999
Q 000702 672 LVS 674 (1343)
Q Consensus 672 l~~ 674 (1343)
+++
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=406.40 Aligned_cols=221 Identities=26% Similarity=0.448 Sum_probs=205.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEE
Q ss_conf 9998338982599999930260358419809999938998889999999658657774899879-------------289
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------TAA 518 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g-------------~i~ 518 (1343)
++++|++|+|+. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9826665668658898613999--99889999999960342683502898531378988778189999999998506998
Q 000702 519 YVSQSAWIQSGNIEENILFGSP--MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 519 yv~Q~~~l~~~ti~~NI~fg~~--~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~ 596 (1343)
||+|+|++|++||+||+.++.. .++++.+++++.+.+...+..+|+|++|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 8988088888798889999999997852995899980599962459889999399698904968897218637999998
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSA 675 (1343)
Q Consensus 597 illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 675 (1343)
|+|||||||+||+.+++.+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 999658865569889999988-788871799899997879999849999999899999999999998689699999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=402.83 Aligned_cols=217 Identities=39% Similarity=0.725 Sum_probs=167.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCC
Q ss_conf 19998338982599999930260358419809999938998889999999658657774899879289982666566865
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGN 530 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~t 530 (1343)
.|.|+|++| .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++|++|++|++++|
T Consensus 38 ~i~~~~~~~-----~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~t 112 (281)
T d1r0wa_ 38 NVSFSHLCL-----VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGT 112 (281)
T ss_dssp --CHHHHHH-----TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEE
T ss_pred CEEEEECCC-----CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCE
T ss_conf 679997698-----997677375999859999999989998299999999579747882899999999981643026760
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 88986139999988999999996034268350289853137898877818999999999850699889880888887988
Q 000702 531 IEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610 (1343)
Q Consensus 531 i~~NI~fg~~~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~salD~~ 610 (1343)
|+|||.||..+++.+++++++.|.+..++..+|++++|.++++|.+|||||||||+||||++++|+|+|||||||+||+.
T Consensus 113 v~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 32142033345605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
Q ss_conf 89999999997852995899980599962459889999399698904968897218637999
Q 000702 611 TGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNAL 672 (1343)
Q Consensus 611 ~~~~i~~~~~~~~~~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l 672 (1343)
+.+.+++.++....+++|+|+|||+++.+..||+|++|++|++++.|+++|++....+|...
T Consensus 193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~ 254 (281)
T d1r0wa_ 193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254 (281)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHH
T ss_conf 99999999998862899999992528999859999999899999987899996059489998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=396.74 Aligned_cols=219 Identities=22% Similarity=0.254 Sum_probs=200.0
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 60899889999768998410010168429979999959999888999998312479863699927306999967885205
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
+.|.|+|+++. ..|||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| ++
T Consensus 37 ~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf 96799976989----97677375999859999999989998299999999579747882899999-------------99
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 06557764367754430698998999999999998599347830148877423349988891388999999998349987
Q 000702 1175 GIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254 (1343)
Q Consensus 1175 ~iIpQdp~LF~gTIr~NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~I 1254 (1343)
+|+||+|.+|++||++|+..+..+++.+++++++.+++.+.+..+|+++++.++++|.+||||||||+||||||+++|+|
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99816430267603214203334560579999999776999984612332355554237799999999999999869635
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 998378879998989999999-99736993799860483100135789999598796624925775059927999999
Q 000702 1255 LVLDEATASVDTATDNLIQKI-IRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1255 LiLDEaTs~lD~~te~~I~~~-l~~~~~~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~~ 1331 (1343)
||||||||+||+.++..|.+. +....+++|+|+|+||++.+..||||++|++|+++++|+|+||++. ++.|++...
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~~ 256 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKLM 256 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHHC
T ss_conf 13338554489899999999999886289999999252899985999999989999998789999605-948999872
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.9e-44 Score=359.15 Aligned_cols=217 Identities=20% Similarity=0.340 Sum_probs=192.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08998899997689984100101684299799999599998889999983124798636999273069999678852050
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++.+|+. ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |++|+
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65577643677-5443069899---8999----99999999859934783014887742334998889138899999999
Q 000702 1176 IIPQDPNLFEG-TIRCNLDPLE---EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247 (1343)
Q Consensus 1176 iIpQdp~LF~g-TIr~NLdp~~---~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARA 1247 (1343)
+|||+|.+|.. |+++|+..+. ..+. +.+.++|+.++|.++..+.| ..||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 98003353422209999999998739999999999999998759855660995-----------4699999889999766
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 834998799837887999898999999999736--99379986048310013-578999959879662492577505992
Q 000702 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSS 1324 (1343)
Q Consensus 1248 lL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~~~ 1324 (1343)
|..+|+||+|||||++||+.+...|.+.|++.. .++|+|+|+|++..+.. ||||++|++|++++.|+|+++++++..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HHH
Q ss_conf 799
Q 000702 1325 MFL 1327 (1343)
Q Consensus 1325 ~f~ 1327 (1343)
.|-
T Consensus 231 ~~~ 233 (239)
T d1v43a3 231 VFV 233 (239)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-44 Score=359.10 Aligned_cols=216 Identities=24% Similarity=0.352 Sum_probs=192.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89988999976899841001016842997999995999988899999831247986369992730699996788520506
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++||+++|+. ..+|+|+||+|++||.+||+|+||||||||++++.|++.|++|+|.+||.|++..+.. |++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5577643677-54430698998---9----99999999998599347830148877423349988891388999999998
Q 000702 1177 IPQDPNLFEG-TIRCNLDPLEE---H----SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRAL 1248 (1343)
Q Consensus 1177 IpQdp~LF~g-TIr~NLdp~~~---~----sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAl 1248 (1343)
|||+|.+|.. |+++|+..... . .++.+.++++.+++.++..+.| ..||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 34998799837887999898999999999736--99379986048310013-5789999598796624925775059927
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325 (1343)
Q Consensus 1249 L~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~~~~ 1325 (1343)
+.+|++|+|||||++||+.+...|++.|++.. .++|+|+|+|++..+.. ||||++|++|++++.|+|+++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred HH
Q ss_conf 99
Q 000702 1326 FL 1327 (1343)
Q Consensus 1326 f~ 1327 (1343)
|-
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.7e-44 Score=359.45 Aligned_cols=214 Identities=22% Similarity=0.389 Sum_probs=192.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89988999976899841001016842997999995999988899999831247986369992730699996788520506
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
|+++|++.+|+. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 5577643677-54430698----998999999999998599347830148877423349988891388999999998349
Q 000702 1177 IPQDPNLFEG-TIRCNLDP----LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQ 1251 (1343)
Q Consensus 1177 IpQdp~LF~g-TIr~NLdp----~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~ 1251 (1343)
|||++.+|.. |+++|+.. .....++++.++++.+++.++.++.| ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCH-----------HHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655575895-----------54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 98799837887999898999999999736--99379986048310013-57899995987966249257750599279
Q 000702 1252 ARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326 (1343)
Q Consensus 1252 ~~ILiLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~~~~f 1326 (1343)
|++|+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|.+|++++.|+|+++++++...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.4e-45 Score=363.62 Aligned_cols=221 Identities=21% Similarity=0.345 Sum_probs=195.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 08998899997689984100101684299799999599998889999983124798636999273069999---678852
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG---LHDLRS 1172 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~---l~~LR~ 1172 (1343)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|++..+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 05065577643677-544306989---9899----999999999859934783014887742334998889138899999
Q 000702 1173 RLGIIPQDPNLFEG-TIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244 (1343)
Q Consensus 1173 ~i~iIpQdp~LF~g-TIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~L 1244 (1343)
++++|||+|.||.. |+++|+... ...+ ++.+.++++.++|.++....|. .||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----------~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----------HCCHHHHHHHHH
T ss_conf 514773043346666577776655676137999999999999866591766648954-----------599999858998
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 999834998799837887999898999999999736--99379986048310013-578999959879662492577505
Q 000702 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLED 1321 (1343)
Q Consensus 1245 ARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~ 1321 (1343)
||||..+|++|++||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|++.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHHH
Q ss_conf 992799
Q 000702 1322 KSSMFL 1327 (1343)
Q Consensus 1322 ~~~~f~ 1327 (1343)
|...|-
T Consensus 232 P~~~~~ 237 (242)
T d1oxxk2 232 PVSIQV 237 (242)
T ss_dssp CSSHHH
T ss_pred CCCHHH
T ss_conf 999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-44 Score=359.10 Aligned_cols=219 Identities=29% Similarity=0.449 Sum_probs=192.6
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899889999768998--4100101684299799999599998889999983124798636999273069999678---85
Q 000702 1097 IELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD---LR 1171 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~--~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~---LR 1171 (1343)
|+++|++..|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCCEEECCCCCCCCC-CHHHHCCC----CC---CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 205065577643677-54430698----99---89999999999985993478301488774233499888913889999
Q 000702 1172 SRLGIIPQDPNLFEG-TIRCNLDP----LE---EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iIpQdp~LF~g-TIr~NLdp----~~---~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~ 1243 (1343)
+++++|||+|.+|.. |+++|+.. .+ +..++.+.++|+.++|.+.....| ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554894-----------349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998349987998378879998989999999997369--9379986048310013-57899995987966249257750
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~ 1320 (1343)
|||||..+|++|++||||+++|+.+...|++.|++..+ +.|+|+|+|++..+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 599279
Q 000702 1321 DKSSMF 1326 (1343)
Q Consensus 1321 ~~~~~f 1326 (1343)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-44 Score=359.51 Aligned_cols=219 Identities=20% Similarity=0.350 Sum_probs=193.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 08998899997689984100101684299799999599998889999983124798636999273069999678----85
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHD----LR 1171 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~----LR 1171 (1343)
.|+++||+.+|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HCCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 205065577643677-544306989---9899----99999999985993478301488774233499888913889999
Q 000702 1172 SRLGIIPQDPNLFEG-TIRCNLDPL---EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243 (1343)
Q Consensus 1172 ~~i~iIpQdp~LF~g-TIr~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~ 1243 (1343)
+++++|||+|.+|.. |+++|+... ...+ ++.+.++++.+++.++....| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993-----------349999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998349987998378879998989999999997369--9379986048310013-57899995987966249257750
Q 000702 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE 1320 (1343)
Q Consensus 1244 LARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~ 1320 (1343)
|||||+.+|++|+|||||++||+.+...|.+.|++..+ +.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 5992799
Q 000702 1321 DKSSMFL 1327 (1343)
Q Consensus 1321 ~~~~~f~ 1327 (1343)
++...|-
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.5e-43 Score=349.14 Aligned_cols=209 Identities=26% Similarity=0.378 Sum_probs=181.4
Q ss_pred EEEEEEEEEECCCCCC--CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 8998899997689984--1001016842997999995999988899999831247986369992730699996788----
Q 000702 1097 IELIDLKVRYGENLPL--VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDL---- 1170 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~--vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~L---- 1170 (1343)
|+++||+++|+.+..+ +|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCCEEECCCCCCCCC-CHHHHCCC------CCCCCHH----HHHHHHHHCCCCHH-HHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 5205065577643677-54430698------9989999----99999998599347-83014887742334998889138
Q 000702 1171 RSRLGIIPQDPNLFEG-TIRCNLDP------LEEHSDR----EIWEALDKSQLGDI-VRGKDQKLETPVLENGDNWSVGQ 1238 (1343)
Q Consensus 1171 R~~i~iIpQdp~LF~g-TIr~NLdp------~~~~sd~----ei~~aL~~~~L~~~-i~~lp~gLdt~i~e~G~nLS~GQ 1238 (1343)
|++|++|+|+|.+|.. |+++|+.. ....+.+ ++.+.|+.++|.+. ....| .+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----------~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----------NQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----------GGSCHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----------HHCCHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880-----------2389999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHH
Q ss_conf 899999999834998799837887999898999999999736--993799860483100135789999598796624925
Q 000702 1239 RQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPG 1316 (1343)
Q Consensus 1239 rQrl~LARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~ 1316 (1343)
|||++|||||..+|++|+|||||++||+.+...|++.|++.. .++|+|+|+|+++....||||++|++|+|++.|++.
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 99999875652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.6e-43 Score=351.75 Aligned_cols=224 Identities=28% Similarity=0.403 Sum_probs=193.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 089988999976899841001016842997999995999988899999831247986369992730699996--------
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL-------- 1167 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l-------- 1167 (1343)
.|+++|++++|+. ..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|++..+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHCCEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCCHHHHC-CCCCCCCCCCCCCC
Q ss_conf -----7885205065577643677-54430698----99899----9999999998599347830-14887742334998
Q 000702 1168 -----HDLRSRLGIIPQDPNLFEG-TIRCNLDP----LEEHS----DREIWEALDKSQLGDIVRG-KDQKLETPVLENGD 1232 (1343)
Q Consensus 1168 -----~~LR~~i~iIpQdp~LF~g-TIr~NLdp----~~~~s----d~ei~~aL~~~~L~~~i~~-lp~gLdt~i~e~G~ 1232 (1343)
...|+++++|+|+|.+|.. |+++|+.. ....+ ++.+.++++.+++.+.... .| .
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------C
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430682-----------2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEE
Q ss_conf 889138899999999834998799837887999898999999999736-99379986048310013-5789999598796
Q 000702 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVA 1310 (1343)
Q Consensus 1233 nLS~GQrQrl~LARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlvl~~G~iv 1310 (1343)
.|||||+||++|||||..+|++|++||||++||+.+...|.+.|++.. +++|+|+|+|++..+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCCCCHH-HHHHHH
Q ss_conf 6249257750599279-999998
Q 000702 1311 EFDTPGRLLEDKSSMF-LKLVTE 1332 (1343)
Q Consensus 1311 e~g~p~~Ll~~~~~~f-~~l~~~ 1332 (1343)
|.|+|+++++++...| ++++..
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~~ 251 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLKG 251 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHHC
T ss_conf 98499999838999999998818
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.2e-42 Score=340.44 Aligned_cols=213 Identities=25% Similarity=0.346 Sum_probs=184.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-C
Q ss_conf 089988999976899841001016842997999995999988899999831247986369992730699996788520-5
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSR-L 1174 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~-i 1174 (1343)
-++++|++.+|+.. .||+||||++++||.+||+|++|||||||+++|.|++.|++|+|.++|.|+...+.+++++. |
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 69997789997996--8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC----------------CCCH----HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 065577643677-5443069899----------------8999----999999998599347830148877423349988
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE----------------EHSD----REIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233 (1343)
Q Consensus 1175 ~iIpQdp~LF~g-TIr~NLdp~~----------------~~sd----~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~n 1233 (1343)
+++||+|.+|.. |+++|+.... ...+ ++..++++..++.+.. |..+ .+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-------DRKA----GE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-------TSBG----GG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHC-------CCCH----HH
T ss_conf 725776424788742321430133303450456654213532899999999998761963020-------5953----56
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEE
Q ss_conf 89138899999999834998799837887999898999999999736-99379986048310013-57899995987966
Q 000702 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAE 1311 (1343)
Q Consensus 1234 LS~GQrQrl~LARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive 1311 (1343)
||||||||++||||+..+|++|+|||||++||+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|++++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHC
Q ss_conf 2492577505
Q 000702 1312 FDTPGRLLED 1321 (1343)
Q Consensus 1312 ~g~p~~Ll~~ 1321 (1343)
.|+|+|+.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-41 Score=337.69 Aligned_cols=215 Identities=24% Similarity=0.417 Sum_probs=187.5
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 60899889999768998410010168429979999959999888999998312479863699927306999967885205
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRL 1174 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i 1174 (1343)
|.|+++|++.+|+.. +||+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 978999589999999--998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHH----HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 065577643677-5443069899---899999----99999985993478301488774233499888913889999999
Q 000702 1175 GIIPQDPNLFEG-TIRCNLDPLE---EHSDRE----IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1175 ~iIpQdp~LF~g-TIr~NLdp~~---~~sd~e----i~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LAR 1246 (1343)
+++||++.+|.. |+++|+..+. ..+.++ +..+++.+++.+.... .+ .+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-------RV----STYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-------BG----GGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH-------HH----HHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888850-------45----337998989999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 9834998799837887999898999999999736-99379986048310013-57899995987966249257750599
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKS 1323 (1343)
Q Consensus 1247 AlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~~ 1323 (1343)
|++.+|+||+|||||++||+.+...|.+.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|+++.++.+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=8.2e-42 Score=339.97 Aligned_cols=216 Identities=21% Similarity=0.379 Sum_probs=182.2
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-C
Q ss_conf 608998899997689984100101684299799999599998889999983124798636999273069999678852-0
Q 000702 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRS-R 1173 (1343)
Q Consensus 1095 g~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~-~ 1173 (1343)
--++++|++.+|+. ..+|+||||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCC--CCCCHHH----HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5065577643677-544306989--9899999----99999985993478301488774233499888913889999999
Q 000702 1174 LGIIPQDPNLFEG-TIRCNLDPL--EEHSDRE----IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGR 1246 (1343)
Q Consensus 1174 i~iIpQdp~LF~g-TIr~NLdp~--~~~sd~e----i~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LAR 1246 (1343)
++++||++.+|.. |+++|+... .....++ +.++++.. ..+....+.. ..+||||||||++|||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~----~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF------PRLKERLKQL----GGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC------HHHHTTTTSB----SSSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HCHHHHHHCC----HHHCCHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999874------1768887585----4338999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9834998799837887999898999999999736-99379986048310013-5789999598796624925775059
Q 000702 1247 ALLKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1247 AlL~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~ 1322 (1343)
|++.+|++|+|||||++||+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|++++.|+|+++++++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 998299874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-40 Score=329.99 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=184.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89988999976899841001016842997999995999988899999831247986369992730699996788520506
Q 000702 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1097 I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
+++ ++.-+|+.- .+ |+||+++ +|.+||+|+||||||||+++|.|+++|++|+|.++|.|+++++.. |++|++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCCC-CCCC----HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5577643677-544306989-9899----999999999859934783014887742334998889138899999999834
Q 000702 1177 IPQDPNLFEG-TIRCNLDPL-EEHS----DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK 1250 (1343)
Q Consensus 1177 IpQdp~LF~g-TIr~NLdp~-~~~s----d~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~ 1250 (1343)
+||+|.+|.. |+++|+... ...+ ++.+.++++.+++.++....| ..||||||||++||||++.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9987998378879998989999999997369--9379986048310013-578999959879662492577505992799
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327 (1343)
Q Consensus 1251 ~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~ 1327 (1343)
+|++|+|||||+++|+.+...+++.|++..+ ++|+|+|+|+++.+.. ||||++|++|++++.|+|+++++.++...+
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHHH
Q ss_conf 9999
Q 000702 1328 KLVT 1331 (1343)
Q Consensus 1328 ~l~~ 1331 (1343)
+++.
T Consensus 224 ~fl~ 227 (240)
T d2onka1 224 EFLS 227 (240)
T ss_dssp HHGG
T ss_pred HHHC
T ss_conf 9857
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.9e-38 Score=309.77 Aligned_cols=200 Identities=26% Similarity=0.358 Sum_probs=170.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEE
Q ss_conf 199983389825999999302603584198099999389988899999996586577748998792-----------899
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-----------AAY 519 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~-----------i~y 519 (1343)
.|+++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|. ++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700015899
Q ss_pred ECCCCCCC-CCCHHHHHCCCCC---CCHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 82666566-8658898613999---99889999----9999603426835028985313789887781899999999985
Q 000702 520 VSQSAWIQ-SGNIEENILFGSP---MDKAKYKK----VIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARAL 591 (1343)
Q Consensus 520 v~Q~~~l~-~~ti~~NI~fg~~---~~~~~~~~----~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal 591 (1343)
|+|++-++ +.||+||+.|+.. .+.++.++ +++.+++. .........||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 800335342220999999999873999999999999999875985-----------566099546999998899997664
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 06998898808888879888999999999785-2-9958999805999624-5988999939969890496889721
Q 000702 592 YQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 592 ~~~~~illLDep~salD~~~~~~i~~~~~~~~-~-~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
..+|++++|||||++||+.+...+++. +..+ . .|+|+|+|||+++... .||+|++|++|+|++.|+++++.++
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 049982430688666898999899999-9999873198079994899999986999999989999998599999868
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-38 Score=314.39 Aligned_cols=199 Identities=31% Similarity=0.434 Sum_probs=168.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9998338982599999930260358419809999938998889999999658657774899879-----------28998
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g-----------~i~yv 520 (1343)
|+++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++| .++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 99999999989---999981117788699899999899982999999996587888888999999778886444322234
Q ss_pred CCCCCCC-CCCHHHHHCCCCCC---CH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2666566-86588986139999---98----8999999996034268350289853137898877818999999999850
Q 000702 521 SQSAWIQ-SGNIEENILFGSPM---DK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALY 592 (1343)
Q Consensus 521 ~Q~~~l~-~~ti~~NI~fg~~~---~~----~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~ 592 (1343)
+|+|-++ +.|++||+.|+... +. ++..++++...+.+. ......+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 3342026433378897899987599889999999999975788656-----------64896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 6998898808888879888999999999785--299589998059996245-988999939969890496889721
Q 000702 593 QDADIYLLDDPFSAVDAHTGSELFKEYIMTA--LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 593 ~~~~illLDep~salD~~~~~~i~~~~~~~~--~~~~T~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
.+|++++|||||++||+.+...+++. +... ..++|+|++||+++.... ||+|++|++|++++.|+++++.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 39988997588878898899899999-9999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.1e-38 Score=313.22 Aligned_cols=202 Identities=28% Similarity=0.377 Sum_probs=170.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 19998338982599999930260358419809999938998889999999658657774899879---------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g--------------- 515 (1343)
.|+++|++++|+. ++..+|+|+||++++||+++|+||||||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECC-CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 8999757999889-998998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEECCCCCCCC-CCHHHHHCCCCC---CCHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -2899826665668-658898613999---9988----999999996034268350289853137898877818999999
Q 000702 516 -TAAYVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 516 -~i~yv~Q~~~l~~-~ti~~NI~fg~~---~~~~----~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~ 586 (1343)
.++||+|+|-++. -||+|||.|+.. .+.+ +.+++++.++|.+. .......||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-----------LNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH-----------HHCCHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766-----------64895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHH
Q ss_conf 9998506998898808888879888999999999785-2-9958999805999624-59889999399698904968897
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~-~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
||||+..+|+++++||||++||+.+...+.+. +..+ . .+.|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 87577604661454478667998998899899-99998635987999979999999969999999899999986999998
Q ss_pred HC
Q ss_conf 21
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
++
T Consensus 230 ~~ 231 (242)
T d1oxxk2 230 DN 231 (242)
T ss_dssp HS
T ss_pred HC
T ss_conf 68
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.1e-38 Score=310.97 Aligned_cols=200 Identities=25% Similarity=0.360 Sum_probs=169.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 19998338982599999930260358419809999938998889999999658657774899879---------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------------- 515 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g--------------- 515 (1343)
.|+++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|.+.|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEECCCCCCCC-CCHHHHHCCCCC---CCHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --2899826665668-658898613999---9988----99999999603426835028985313789887781899999
Q 000702 516 --TAAYVSQSAWIQS-GNIEENILFGSP---MDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 516 --~i~yv~Q~~~l~~-~ti~~NI~fg~~---~~~~----~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi 585 (1343)
.++||+|+|-++. .||.||+.|+.. .+.+ +..++++.+.+.+. .......||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~-----------~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667-----------6299334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHH
Q ss_conf 99998506998898808888879888999999999785-29-9589998059996245-988999939969890496889
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LA-NKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDL 662 (1343)
Q Consensus 586 ~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~-~~T~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 662 (1343)
+||||+..+|++++|||||++||+.+...+.+. +..+ .+ |.|+|++||+++.+.. ||+|++|++|++++.|+++|+
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~-l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999998269988982588765698999899999-9999863698899995999999996999999989999998599999
Q ss_pred HHC
Q ss_conf 721
Q 000702 663 LQA 665 (1343)
Q Consensus 663 ~~~ 665 (1343)
..+
T Consensus 228 ~~~ 230 (240)
T d1g2912 228 YDK 230 (240)
T ss_dssp HHS
T ss_pred HHC
T ss_conf 828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.1e-38 Score=313.34 Aligned_cols=198 Identities=31% Similarity=0.464 Sum_probs=170.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9998338982599999930260358419809999938998889999999658657774899879-----------28998
Q 000702 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAYV 520 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g-----------~i~yv 520 (1343)
|+++|++++|. ..+|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++| .++||
T Consensus 2 i~v~nlsk~y~----~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECS----SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC----CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 89998999949----97884337898799899999899982999999996476888788999567346521657405615
Q ss_pred CCCCCCCC-CCHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 26665668-658898613999----9988999999996034268350289853137898877818999999999850699
Q 000702 521 SQSAWIQS-GNIEENILFGSP----MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDA 595 (1343)
Q Consensus 521 ~Q~~~l~~-~ti~~NI~fg~~----~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~ 595 (1343)
+|++-++. .||+||+.|+.. .++++..++++...+.+ .......+||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH-----------HHHCCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 121111746657788888776405538999999999825655-----------575895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8898808888879888999999999785-2-9958999805999624-5988999939969890496889721
Q 000702 596 DIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 596 ~illLDep~salD~~~~~~i~~~~~~~~-~-~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+++||||||++||+.+...+++. +..+ . .+.|+|++||+++... .||+|++|++|++++.|+++++.++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREM-LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 71443478767998999999999-9999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-38 Score=311.41 Aligned_cols=202 Identities=24% Similarity=0.375 Sum_probs=168.4
Q ss_pred EEEEEEEEEECCCCCC-CCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 9998338982599999-9302603584198099999389988899999996586577748998792--------------
Q 000702 452 IQIENAEFCWYPSSSR-PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~~-~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~-------------- 516 (1343)
|+++|++++|+.+... .+|+|+||++++||+++|+||||||||||+++|.|..+|++|+|.++|.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred --EEEECCCCCCCC-CCHHHHHCCCCC---CCH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --899826665668-658898613999---998----8999999996034268350289853137898877818999999
Q 000702 517 --AAYVSQSAWIQS-GNIEENILFGSP---MDK----AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586 (1343)
Q Consensus 517 --i~yv~Q~~~l~~-~ti~~NI~fg~~---~~~----~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~ 586 (1343)
++||+|++-++. .||+|||.++.. .++ ++..+.++.++|.+. .......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-----------~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-----------TSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-----------HHCCHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035-----------54894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHH
Q ss_conf 9998506998898808888879888999999999785-29-958999805999624-59889999399698904968897
Q 000702 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LA-NKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLL 663 (1343)
Q Consensus 587 LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~-~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 663 (1343)
||||+..+|+++|+||||++||+.+...+++. +..+ .+ |.|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 86401058986874465565898885679999-99998646978999838999999869999999799999987999997
Q ss_pred HC
Q ss_conf 21
Q 000702 664 QA 665 (1343)
Q Consensus 664 ~~ 665 (1343)
++
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred HC
T ss_conf 28
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-37 Score=305.42 Aligned_cols=200 Identities=27% Similarity=0.361 Sum_probs=161.2
Q ss_pred EEEEEEEEEECCCCC-CCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 999833898259999-99302603584198099999389988899999996586577748998792--------------
Q 000702 452 IQIENAEFCWYPSSS-RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 452 i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~-------------- 516 (1343)
|+++|++++|..+.. ..+|+|+||++++||+++|+||||||||||+++|.|..+|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred ---EEEECCCCCCC-CCCHHHHHCCCCC------CCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---89982666566-8658898613999------998-899999999603426835028985313789887781899999
Q 000702 517 ---AAYVSQSAWIQ-SGNIEENILFGSP------MDK-AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRV 585 (1343)
Q Consensus 517 ---i~yv~Q~~~l~-~~ti~~NI~fg~~------~~~-~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi 585 (1343)
++||+|+|-++ +.||+||+.++.. .+. ++.+++.+...+. .+++ ........+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~L~~---~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA----ELEE---RFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHT----TCCG---GGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----CHHH---HHHCCCHHHCCHHHHHHH
T ss_conf 555778804124176866888775788872247899999999999988762----4234---553488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 99998506998898808888879888999999999785-2-99589998059996245988999939969890496
Q 000702 586 QLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-L-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKY 659 (1343)
Q Consensus 586 ~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~-~~~T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~ 659 (1343)
+||||+..+|++++||||||+||+.+...+++. +..+ . .++|+|+|||+++....||+|++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999-999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-36 Score=299.69 Aligned_cols=202 Identities=27% Similarity=0.421 Sum_probs=168.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 199983389825999999302603584198099999389988899999996586577748998792--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|++++|. +..+|+|+||++++||+++|+|++|||||||+++|.|.++|++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------------EEEECCCCCCCC-CCHHHHHCCC----CCCCHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ------------899826665668-6588986139----999988----9999999960342683502898531378988
Q 000702 517 ------------AAYVSQSAWIQS-GNIEENILFG----SPMDKA----KYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575 (1343)
Q Consensus 517 ------------i~yv~Q~~~l~~-~ti~~NI~fg----~~~~~~----~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~ 575 (1343)
++||+|+|-++. .|+.||+.++ ...+.. +..++++.+.+.+... .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCC
T ss_conf 51767999745448998332314110102136565787629998999999999999829952443----------06822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCC-CCCEEEEEECCEE
Q ss_conf 77818999999999850699889880888887988899999999978-529958999805999624-5988999939969
Q 000702 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT-ALANKTVIFVTHQVEFLP-AADFILVLKEGRI 653 (1343)
Q Consensus 576 ~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~-~~~~~T~ilvth~~~~l~-~~d~i~~l~~G~i 653 (1343)
.||||||||++||||+..+|++++|||||++||+.+...+++. +.. ..+|+|+|+|||+++.+. .||+|++|++|+|
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 0567788898999998439987885245556887888899876-554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHCC
Q ss_conf 8904968897218
Q 000702 654 IQAGKYDDLLQAG 666 (1343)
Q Consensus 654 ~~~g~~~~l~~~~ 666 (1343)
++.|+++|++.+.
T Consensus 228 v~~g~~~ev~~~P 240 (258)
T d1b0ua_ 228 EEEGDPEQVFGNP 240 (258)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEECCHHHHHHCC
T ss_conf 9984999998389
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.3e-36 Score=297.25 Aligned_cols=206 Identities=27% Similarity=0.416 Sum_probs=168.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 42199983389825999999302603584198099999389988899999996586577748998792------------
Q 000702 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------ 516 (1343)
Q Consensus 449 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~------------ 516 (1343)
+..++++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|.
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 60799961899989---988883025788899799999999985999999996788888038984244344660888887
Q ss_pred --EEEECCCCCCCC-CCHHHHHCCCCC--CCHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --899826665668-658898613999--9988999999-9960342683502898531378988778189999999998
Q 000702 517 --AAYVSQSAWIQS-GNIEENILFGSP--MDKAKYKKVI-HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARA 590 (1343)
Q Consensus 517 --i~yv~Q~~~l~~-~ti~~NI~fg~~--~~~~~~~~~~-~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARa 590 (1343)
++|++|++-+|. -|++||+.++.. .+.+...+.+ +...+...+. ........+||||||||++||||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH-------HHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 42355676554577636999999888732788899999999998741768-------88758543389999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 506998898808888879888999999999785-29958999805999624-5988999939969890496889721
Q 000702 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 591 l~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+..+|++++|||||++||+.....+++. +..+ .+|+|+|++||+++.+. .||+|++|++|++++.|+++|+.++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEV-IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9829987400398867999999999999-999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-36 Score=296.38 Aligned_cols=203 Identities=23% Similarity=0.359 Sum_probs=166.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 199983389825999999302603584198099999389988899999996586577748998792--------------
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------- 516 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~-------------- 516 (1343)
.++++|++.+|. +..+|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|.
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCC-CCCHHHHHCCCCCC-----------------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 89982666566-86588986139999-----------------9889999999960342683502898531378988778
Q 000702 517 AAYVSQSAWIQ-SGNIEENILFGSPM-----------------DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLS 578 (1343)
Q Consensus 517 i~yv~Q~~~l~-~~ti~~NI~fg~~~-----------------~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LS 578 (1343)
++|++|+|-++ +.|+.||+.+|... +++..+++.+. .+.+ |..........+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~-----~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI---LEFL-----KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHH---HHHT-----TCGGGTTSBGGGSC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHH---HHHC-----CCCHHCCCCHHHCC
T ss_conf 872577642478874232143013330345045665421353289999999999---8761-----96302059535699
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCEEEEEECCEEEEEC
Q ss_conf 18999999999850699889880888887988899999999978529958999805999624-59889999399698904
Q 000702 579 GGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAG 657 (1343)
Q Consensus 579 gGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g 657 (1343)
||||||++||||+..+|+++||||||++||+.....+++.......+|+|+|++||+++.+. .||+|++|++|+++..|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 18888999999997592723243976569999999999999999978998999947699999869999999699899996
Q ss_pred CHHHHHH
Q ss_conf 9688972
Q 000702 658 KYDDLLQ 664 (1343)
Q Consensus 658 ~~~~l~~ 664 (1343)
+++|+.+
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred CHHHHHH
T ss_conf 6899865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-37 Score=303.50 Aligned_cols=209 Identities=19% Similarity=0.279 Sum_probs=180.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08998899997689984100101684299799999599998889999983124798636999273069999678852050
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
-++++||+.+ .+|++|||+|++||.+||+|+||||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCT------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCC------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 9999874157------1555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC--
Q ss_conf 65577643-677544306989--9899999999999859934783014887742334998889138899999999834--
Q 000702 1176 IIPQDPNL-FEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLK-- 1250 (1343)
Q Consensus 1176 iIpQdp~L-F~gTIr~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~-- 1250 (1343)
+++|+... |..++.+|+..+ .....+.+.++++.+++.+.... ...+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTS-----------BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767676-----------84456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----998799837887999898999999999736-99379986048310013-5789999598796624925775059
Q 000702 1251 -----QARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDK 1322 (1343)
Q Consensus 1251 -----~~~ILiLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlvl~~G~ive~g~p~~Ll~~~ 1322 (1343)
+|+||+|||||++||+.+...|.+.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-35 Score=289.75 Aligned_cols=205 Identities=23% Similarity=0.327 Sum_probs=168.2
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------E
Q ss_conf 2199983389825999999302603584198099999389988899999996586577748998792------------8
Q 000702 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT------------A 517 (1343)
Q Consensus 450 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~------------i 517 (1343)
++|.++|++.+|. ++.+|+|+||++++||+++|+||+|||||||+++|.|.+.|++|+|.++|. +
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEECCCCCCC-CCCHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9982666566-8658898613999---99889999999960342683502898531378988778189999999998506
Q 000702 518 AYVSQSAWIQ-SGNIEENILFGSP---MDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ 593 (1343)
Q Consensus 518 ~yv~Q~~~l~-~~ti~~NI~fg~~---~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~ 593 (1343)
+|+||++.++ +.|++||+.|... .+..+.++.++.. ++.+ |.......+..+||||||||++||||+..
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 6750015468786677888989986179989999999999-----9867--97888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998898808888879888999999999785-29958999805999624-5988999939969890496889721
Q 000702 594 DADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 594 ~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+|++++|||||++||+...+.+++ .+... .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 999887337988979899999999-9999996599899995989999996999999989999999289999865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.3e-35 Score=285.08 Aligned_cols=190 Identities=25% Similarity=0.391 Sum_probs=162.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08998899997689984100101684299799999599998889999983124798636999273069999678852050
Q 000702 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLG 1175 (1343)
Q Consensus 1096 ~I~f~nvs~~Y~~~~~~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~ 1175 (1343)
.|+++|++++|+. +||+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++ +|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 5999989999399---28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC-----CCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 65577643677-54430698-----9989999999999985993478301488774233499888913889999999983
Q 000702 1176 IIPQDPNLFEG-TIRCNLDP-----LEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL 1249 (1343)
Q Consensus 1176 iIpQdp~LF~g-TIr~NLdp-----~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL 1249 (1343)
++||++.++.. |+++|+.. ..+.+++++.++++..++.+ ++..+ .+||+|||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------30126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 499879983788799989899999999973699379986048310013578999959
Q 000702 1250 KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSD 1306 (1343)
Q Consensus 1250 ~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~~DrIlvl~~ 1306 (1343)
.+|+++||||||+++|+++...+.+.|++..++.++++|+|+ +.+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 499899986862016999999999999999867999999991-62544161234010
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.2e-35 Score=286.07 Aligned_cols=187 Identities=32% Similarity=0.467 Sum_probs=153.1
Q ss_pred CCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEECCCCCCCC-CCHHHHH
Q ss_conf 930260358419809999938998889999999658657774899879-----------2899826665668-6588986
Q 000702 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAAYVSQSAWIQS-GNIEENI 535 (1343)
Q Consensus 468 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g-----------~i~yv~Q~~~l~~-~ti~~NI 535 (1343)
+.+ |+||+++ +++++|+||||||||||+++|.|.++|++|+|.++| .++||+|++-++. -||+||+
T Consensus 14 ~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl 91 (240)
T d2onka1 14 FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHH
T ss_conf 999-9999749-97999997999809999999973999896289999999886998992852252314435220155766
Q ss_pred CCCCC-CCHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 13999-9988999-999996034268350289853137898877818999999999850699889880888887988899
Q 000702 536 LFGSP-MDKAKYK-KVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613 (1343)
Q Consensus 536 ~fg~~-~~~~~~~-~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~ 613 (1343)
.||.. .+....+ ++.+.+ +.+ |...........||||||||++||||+..+|++++||||||+||+.+..
T Consensus 92 ~~~l~~~~~~~~~~~v~~~l------~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 92 AYGLRNVERVERDRRVREMA------EKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHH------HTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHH------HHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 65323367788999999999------863--8375665794448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHH-C-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9999999785-2-9958999805999624-5988999939969890496889721
Q 000702 614 ELFKEYIMTA-L-ANKTVIFVTHQVEFLP-AADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 614 ~i~~~~~~~~-~-~~~T~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
.+++. +..+ . .+.|+|++||+++.+. .||+|++|++|++++.|+++|+.+.
T Consensus 164 ~i~~~-i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 164 VLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 99999-9999874397699981899999996999999989999999069998329
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-32 Score=265.18 Aligned_cols=195 Identities=24% Similarity=0.373 Sum_probs=161.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 199983389825999999302603584198099999389988899999996586577748998792-------------8
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT-------------A 517 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~-------------i 517 (1343)
.++++|++.+ ..|+++||++++||+++|+|+||||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 99826665-6686588986139999--9889999999960342683502898531378988778189999999998506-
Q 000702 518 AYVSQSAW-IQSGNIEENILFGSPM--DKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ- 593 (1343)
Q Consensus 518 ~yv~Q~~~-l~~~ti~~NI~fg~~~--~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~- 593 (1343)
+|++|+.. .+..++.+++.++... ..++..++++.+.+.+ .++.+..+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2451213577442098876410014668999999998659876-----------76768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------998898808888879888999999999785-2995899980599962-45988999939969890496889721
Q 000702 594 ------DADIYLLDDPFSAVDAHTGSELFKEYIMTA-LANKTVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLLQA 665 (1343)
Q Consensus 594 ------~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~T~ilvth~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 665 (1343)
+|++++|||||++||+.....+. +.+..+ .+|+|+|++||+++.+ ..||+|++|++|++++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=4.8e-30 Score=247.80 Aligned_cols=181 Identities=26% Similarity=0.420 Sum_probs=142.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEECC
Q ss_conf 19998338982599999930260358419809999938998889999999658657774899879--------2899826
Q 000702 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG--------TAAYVSQ 522 (1343)
Q Consensus 451 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g--------~i~yv~Q 522 (1343)
.++++|++++|+ +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCCC-CCHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 665668-658898613-----99999889999999960342683502898531378988778189999999998506998
Q 000702 523 SAWIQS-GNIEENILF-----GSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDAD 596 (1343)
Q Consensus 523 ~~~l~~-~ti~~NI~f-----g~~~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~ 596 (1343)
++.++. -|++||+.+ |...++++..+.++...+.+ +.++..+||||||||++||||++.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 13578882899999999975488637999999998748856------------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 89880888887988899999999978529-9589998059996245988999939
Q 000702 597 IYLLDDPFSAVDAHTGSELFKEYIMTALA-NKTVIFVTHQVEFLPAADFILVLKE 650 (1343)
Q Consensus 597 illLDep~salD~~~~~~i~~~~~~~~~~-~~T~ilvth~~~~l~~~d~i~~l~~ 650 (1343)
++||||||++||+.+...+++. +....+ +.++|+.+| +.+..||.+.+|..
T Consensus 146 llllDEPt~gLD~~~~~~i~~~-l~~~~~~~~~~ii~~~--~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSR--EELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHH-HHHHHHHHSEEEEEES--SCCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEE--CHHHHCCHHHHEEE
T ss_conf 9998686201699999999999-9999867999999991--62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=5.7e-23 Score=192.34 Aligned_cols=309 Identities=11% Similarity=0.070 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997899999999999999999899999999999704888774148999999999999999999999999999999
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPHEGYILAGIFFSAKLVETITTRQWYLGVDILGM 205 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~ii~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (1343)
++.+.+.||+.+++..++.++..++....|++++.++|....... ....+.+++.+++..++..++.....+...+.+.
T Consensus 7 l~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (319)
T d3b60a2 7 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSG 85 (319)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999998744687-7899999999999999764533546654434310
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999856980000468856789999999999999998-999999899999999999999987999999999
Q 000702 206 HVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIASVATLIA 284 (1343)
Q Consensus 206 ~~r~~L~~~if~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~l~~~pl~i~~~~~~l~~~~g~~~~~g~~~ 284 (1343)
++...++..+|+|.++.+..++++.++|++++++++|++.+.+... ....+....+.++.+++.++...+..+++.++.
T Consensus 86 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~ 165 (319)
T d3b60a2 86 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 00110004777765010111102333221111121212100001111120011233445668888876520021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999994679999951699999999999999999999999999999999
Q 000702 285 TIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQAFITFI 364 (1343)
Q Consensus 285 ~~i~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~i~~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~~~~~~~~~ 364 (1343)
.++...+.....++..+..++..+..++..+.+.|.++|++.+|.+++|+.+.++.++..++..+...+...........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87788--999999999998809976788899999999999999999999999999999999999996066446
Q 000702 365 FWSSP--IFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEEL 435 (1343)
Q Consensus 365 ~~~~~--~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~vs~~Ri~~fl~~~e~ 435 (1343)
..... ..+.++.++.+.+..|.+|+|.+++++.+...+..|+..++..+..+.++.+|.+|+.++++.|++
T Consensus 246 ~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=5.4e-23 Score=192.56 Aligned_cols=309 Identities=15% Similarity=0.157 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH----H--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999978999999999999999998999999999997048887741----4--8999999999999999999999999
Q 000702 126 ALAILKSFWKEAALNAVFAGLNTIVSYVGPYLVSYFVDYLGGKETFPH----E--GYILAGIFFSAKLVETITTRQWYLG 199 (1343)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~ii~~l~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~~~~~~ 199 (1343)
++.++++||+.++...++.++..++....|++++.++|.+........ . .+.+++++++..++..++.....+.
T Consensus 5 l~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 84 (323)
T d2hyda2 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYL 84 (323)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999986267742155689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999856980000468856789999999999999998-999999899999999999999987999
Q 000702 200 VDILGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRVGDYSW-YLHDIWMLPLQIILALAILYKNVGIAS 278 (1343)
Q Consensus 200 ~~~~~~~~r~~L~~~if~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~l~~~pl~i~~~~~~l~~~~g~~~ 278 (1343)
..+.+.+++..++..+|+|.++++...+++.++|++++++++|++.+.+... .+..++...+.++++++.++......+
T Consensus 85 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (323)
T d2hyda2 85 AQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999855677888876654023321000122211000111133210011134542011146653346544000014688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999994679999951699999999999999999999999999
Q 000702 279 VATLIATIISIVVTVPVAKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRWLRKALYSQ 358 (1343)
Q Consensus 279 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~i~~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~~~ 358 (1343)
++.++..++...+...+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+.....
T Consensus 165 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~ 244 (323)
T d2hyda2 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (323)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 89999887777777641233320267789899999978788755970234676411100233022311110156776520
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999998778--899999999999880997678889999999999999999999999999999999999999606644
Q 000702 359 AFITFIFWSS--PIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEE 434 (1343)
Q Consensus 359 ~~~~~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~vs~~Ri~~fl~~~e 434 (1343)
.......... ...+.++.++.+.+..|.+++|.+++++.++..+..|+..++..+..+.++.+|.+|+.++|++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=1.3e-21 Score=181.71 Aligned_cols=314 Identities=11% Similarity=0.115 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999830236999999999999999997555442027777799999873599999999987999999999999999
Q 000702 763 KVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYMALAFGSSWFIFVRAVLVAT 842 (1343)
Q Consensus 763 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~ 842 (1343)
+.++.|++...+.. .+.+++.++..+.....++.++...|......+......+...++++.++..++.+++.+....
T Consensus 5 krl~~~~~~~k~~l--~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKAGL--IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999--9999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988326653213467014589883112221032021499999999999999988998878999999
Q 000702 843 FGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLV 922 (1343)
Q Consensus 843 ~~~~~s~~l~~~l~~~il~~p~~ff~~~p~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 922 (1343)
.+.+...+++.++++++++.|+.+|++.+.|++++|+++|++.+...+...+..++...+.+++.++.+...+|.+.+++
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998799999999831559999998411530012247089999999999985424699999999999
Q 000702 923 IPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWL 1002 (1343)
Q Consensus 923 i~~~~l~~~~~~~~~~~~r~~~rl~~~~~spi~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1002 (1343)
++.++++..+..++.+..++..+......+...+.+.|.+.|+.+||+|+.|+.+.+++.+..+...+..........+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999999-9870599878879999999999999999999999999998766699999863499999
Q 000702 1003 CLRMELLSTFVFAFCMVL-LVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEA 1078 (1343)
Q Consensus 1003 ~~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~~~~e~ 1078 (1343)
.....++..+...++..+ ......|.+++|.+..++.+...+..++..+...+..+++...|.+|+.|+.+.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=2.9e-21 Score=178.96 Aligned_cols=314 Identities=14% Similarity=0.120 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--HHHHH-----HHHHHHHHHHHHHHH
Q ss_conf 89899999983023699999999999999999755544202777779999987--35999-----999999879999999
Q 000702 762 MKVYLSYMAAAYRGLLIPLIILAQVLFQFLQIASNWWMAWANPQTEGDQPKVN--PMVLL-----VVYMALAFGSSWFIF 834 (1343)
Q Consensus 762 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l-----~~y~~l~~~~~~~~~ 834 (1343)
++.++.|++...+.. ...+++.++..+.....++.+++..|.......... ....+ ..+.++.++..++.+
T Consensus 2 lKrl~~~~k~~k~~~--~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (323)
T d2hyda2 2 IKRYLQFVKPYKYRI--FATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEF 79 (323)
T ss_dssp HHHHHHHHGGGHHHH--HHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999--999999999999999999999999999862677421556899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999883266532134670145898831122210320214999999999999999889988
Q 000702 835 VRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMV 914 (1343)
Q Consensus 835 ~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ff~~~p~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~i~~~ 914 (1343)
++.++....+.+...+++.++++++++.|++||++.+.|++++|+++|+..++..+...+..++...+.+++.++.+...
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998556778888766540233210001222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999999999999987999999998315599999984115300122470899999999999854246999
Q 000702 915 TWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFC 994 (1343)
Q Consensus 915 ~~~~~~~~i~~~~l~~~~~~~~~~~~r~~~rl~~~~~spi~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~d~~~~~~~~ 994 (1343)
+|.+.++.++..+++..+...+.+..++..+......+...+++.|++.|+.+||+|+.|+.+.+++.+..+...+....
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999-98705998788799999999999999999999999999987666999998634
Q 000702 995 SLAAIEWLCLRMELLSTFVFAFCMVL-LVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQ 1073 (1343)
Q Consensus 995 ~~~~~~wl~~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~s~eRi~~~~~ 1073 (1343)
......+.......+..+...+...+ ......|.+++|.+..++.+...+..++..+...+.++...+.|.+|+.|+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 9999
Q 000702 1074 IPGE 1077 (1343)
Q Consensus 1074 ~~~e 1077 (1343)
.++|
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.56 E-value=7.7e-16 Score=136.47 Aligned_cols=172 Identities=10% Similarity=0.042 Sum_probs=122.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999599998889999983124798636999273069999678852050655776436775443069899899999999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ei~~ 1205 (1343)
||+|+|++|||||||++.+.+.+++..|.+.+++.+....+...........++.+.++..+...+......
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCCC
Q ss_conf 99985993478301488774233499888913889999999983499879983788799--9898999999999736993
Q 000702 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV--DTATDNLIQKIIRTEFKDC 1283 (1343)
Q Consensus 1206 aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILiLDEaTs~l--D~~te~~I~~~l~~~~~~~ 1283 (1343)
+.+... ..+|+|++|+.+++++..++|+++++||++... +.+....+.+.++. .++
T Consensus 74 ----------------~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 74 ----------------GVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp ----------------EECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred ----------------HCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCC
T ss_conf ----------------037625----6653201378999999740997423027773100457999999987505--797
Q ss_pred EEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 7998604831001357899995987966249257750599279999998
Q 000702 1284 TVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTE 1332 (1343)
Q Consensus 1284 TvI~IAHRl~ti~~~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~~~ 1332 (1343)
|+|.++|+......||++..+++|++++.++. +.+..+.++++.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~~ 175 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILSL 175 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHHH
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHHH
T ss_conf 89999744778986365998719999998996-----478899999999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=1.2e-11 Score=103.50 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 8891388999999998----34998799837887999898999999999736-993799860483100135789999
Q 000702 1233 NWSVGQRQLVSLGRAL----LKQARILVLDEATASVDTATDNLIQKIIRTEF-KDCTVCTIAHRIPTVIDSDLVLVL 1304 (1343)
Q Consensus 1233 nLS~GQrQrl~LARAl----L~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlvl 1304 (1343)
.+|||||.+++||-.+ ..++++++||||++++|+.+...+.+.|++.. .++-+|+|||++.+...+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.27 E-value=5.2e-13 Score=114.33 Aligned_cols=147 Identities=13% Similarity=0.035 Sum_probs=98.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE--EE-----------ECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 999993899888999999965865777489987928--99-----------82666566865889861399999889999
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA--AY-----------VSQSAWIQSGNIEENILFGSPMDKAKYKK 548 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i--~y-----------v~Q~~~l~~~ti~~NI~fg~~~~~~~~~~ 548 (1343)
.++|+||+|||||||++.++|++++..|.+...+.- .+ .++.+.+...+...+..+++.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCC
Q ss_conf 9999603426835028985313789887781899999999985069988988088888798889999999997852-995
Q 000702 549 VIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANK 627 (1343)
Q Consensus 549 ~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~ 627 (1343)
.+......+++|+++|.+++++...+|+++++|||....+. . ....+.....+. .++
T Consensus 74 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 74 --------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPNV 131 (178)
T ss_dssp --------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTTS
T ss_pred --------------------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCCC
T ss_conf --------------------03762566532013789999997409974230277731004-5-7999999987505797
Q ss_pred EEEEEECCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 8999805999624598899993996989049
Q 000702 628 TVIFVTHQVEFLPAADFILVLKEGRIIQAGK 658 (1343)
Q Consensus 628 T~ilvth~~~~l~~~d~i~~l~~G~i~~~g~ 658 (1343)
|+|+++|+....+.+|++..+++|++++.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 8999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=5.2e-09 Score=82.95 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE--EEC
Q ss_conf 88913889999999983----499879983788799989899999999973699379986048310013578999--959
Q 000702 1233 NWSVGQRQLVSLGRALL----KQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLV--LSD 1306 (1343)
Q Consensus 1233 nLS~GQrQrl~LARAlL----~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~~DrIlv--l~~ 1306 (1343)
.+|.|||+++.++..+. .+++++++|||-+++++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000702 1307 G 1307 (1343)
Q Consensus 1307 G 1307 (1343)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=3.6e-07 Score=68.57 Aligned_cols=77 Identities=26% Similarity=0.328 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE--E
Q ss_conf 8778189999999998----506998898808888879888999999999785299589998059996245988999--9
Q 000702 575 INLSGGQKQRVQLARA----LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILV--L 648 (1343)
Q Consensus 575 ~~LSgGQkqRi~LARa----l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~~~d~i~~--l 648 (1343)
..+|+|||+...++.. ...++.++++|||-++|++...+.+.+ .+....++.-+|++||++..+..+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECCE
Q ss_conf 3996
Q 000702 649 KEGR 652 (1343)
Q Consensus 649 ~~G~ 652 (1343)
++|.
T Consensus 297 ~~g~ 300 (308)
T d1e69a_ 297 VNGV 300 (308)
T ss_dssp SSSC
T ss_pred ECCE
T ss_conf 6999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=2.2e-06 Score=62.32 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 8778189999999998----5069988988088888798889999999997852-995899980599962459889999
Q 000702 575 INLSGGQKQRVQLARA----LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVIFVTHQVEFLPAADFILVL 648 (1343)
Q Consensus 575 ~~LSgGQkqRi~LARa----l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~T~ilvth~~~~l~~~d~i~~l 648 (1343)
..||||||.+++||=. .+.++++++||||.++||+.....+.+ .+.... .+.-+|++||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 33223047999999999995479997799968877789999999999-9999728998899995878999736617999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=5.2e-05 Score=51.60 Aligned_cols=161 Identities=11% Similarity=0.044 Sum_probs=84.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCC------CCC
Q ss_conf 79999959999888999998312479863699927306999967885205065577643677544306989------989
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL------EEH 1198 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~------~~~ 1198 (1343)
..|.|+|+.|+|||||++.+.+.+....+.+.+.+.+........+.....-+.|+...+.....++.... ...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred -CHHHHHHHHHHCCCCHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf -999999999985993478301-488774233499888913889999999983499879983788799989899999999
Q 000702 1199 -SDREIWEALDKSQLGDIVRGK-DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276 (1343)
Q Consensus 1199 -sd~ei~~aL~~~~L~~~i~~l-p~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILiLDEaTs~lD~~te~~I~~~l 1276 (1343)
..+++.+. ....+ +.+... ..+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+
T Consensus 82 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (189)
T d2i3ba1 82 VDLTSFEQL-ALPVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEI 157 (189)
T ss_dssp ECHHHHHTT-TTTTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHH
T ss_pred CCHHHHHHH-HHHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHH
T ss_conf 037777778-89999-99988762189706861433330535999999999854686599961555775569--999998
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 97369937998604
Q 000702 1277 RTEFKDCTVCTIAH 1290 (1343)
Q Consensus 1277 ~~~~~~~TvI~IAH 1290 (1343)
+ ..++.+++.++.
T Consensus 158 ~-~~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 R-NRKDVKVFNVTK 170 (189)
T ss_dssp H-TTCCSEEEECCS
T ss_pred H-CCCCCEEEEECH
T ss_conf 6-789974999786
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.07 E-value=0.0029 Score=37.93 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCC
Q ss_conf 93026035841980999993899888999999965865777489987928998266
Q 000702 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQS 523 (1343)
Q Consensus 468 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~ 523 (1343)
+.|++..--+.+|+++.|.|++|+|||+|+.-++-.+....| .++.|++-+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~E 73 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAMLE 73 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEESS
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEC
T ss_conf 668887469789808999947999799999999972655336-----634576401
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.87 E-value=0.00027 Score=46.00 Aligned_cols=37 Identities=35% Similarity=0.609 Sum_probs=25.7
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 4198099999389988899999996586577748998
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL 513 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~ 513 (1343)
+..+.-+.|+|++||||||++++|++++++..--+.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.0059 Score=35.55 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred EEEEEEEEEEECC-----CCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEEEEECCCC
Q ss_conf 1999833898259-----99999302603584198099999389988899999996586-57774899879289982666
Q 000702 451 AIQIENAEFCWYP-----SSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI-PKISGEVRLCGTAAYVSQSA 524 (1343)
Q Consensus 451 ~i~~~~~~f~~~~-----~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~-~~~~G~i~~~g~i~yv~Q~~ 524 (1343)
.++++++ |.+ ..++++=.|+++. +.+....|.|||.+||||+++.+.=-. -...|. .++..-+-++--.
T Consensus 11 ~l~i~~~---rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~-~VpA~~a~~~~~d 85 (234)
T d1wb9a2 11 GIRITEG---RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS-YVPAQKVEIGPID 85 (234)
T ss_dssp CEEEEEE---CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC-CBSSSEEEECCCC
T ss_pred CEEEEEE---ECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC-EEECCCEECCCCH
T ss_conf 6899973---787797446998264057988-9953999954673136899998799999987297-6741766613442
Q ss_pred CCC-CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 566-8658898613999998899999999603426835028985313789887781899999999985069988988088
Q 000702 525 WIQ-SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603 (1343)
Q Consensus 525 ~l~-~~ti~~NI~fg~~~~~~~~~~~~~~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep 603 (1343)
.++ .-...|++.-|...=..+..++-. -+. -..+..++|+||+
T Consensus 86 ~I~~~~~~~d~~~~~~S~F~~E~~~~~~------il~------------------------------~~~~~sLvliDE~ 129 (234)
T d1wb9a2 86 RIFTRVGAADDLASGRSTFMVEMTETAN------ILH------------------------------NATEYSLVLMDEI 129 (234)
T ss_dssp EEEEEEC-----------CHHHHHHHHH------HHH------------------------------HCCTTEEEEEESC
T ss_pred HHEEEECCCCCCCCCHHHHHHHHHHHHH------HHH------------------------------HCCCCCEEEECCC
T ss_conf 0234874675343653189999999999------997------------------------------4546608853222
Q ss_pred CCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCCCC
Q ss_conf 88879888999999999785-29-9589998059996
Q 000702 604 FSAVDAHTGSELFKEYIMTA-LA-NKTVIFVTHQVEF 638 (1343)
Q Consensus 604 ~salD~~~~~~i~~~~~~~~-~~-~~T~ilvth~~~~ 638 (1343)
..+=++..+..+....+..+ .+ +..++++||..+.
T Consensus 130 ~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 130 GRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 3587745666789876454320454428985246877
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.75 E-value=0.011 Score=33.37 Aligned_cols=175 Identities=12% Similarity=0.119 Sum_probs=83.0
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHC-CEEECCCCCCCCCCHHH
Q ss_conf 10010168429979999959999888999998312479863-69992730699996788520-50655776436775443
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG-RIIIDNIDISTIGLHDLRSR-LGIIPQDPNLFEGTIRC 1190 (1343)
Q Consensus 1113 vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G-~I~IdG~di~~i~l~~LR~~-i~iIpQdp~LF~gTIr~ 1190 (1343)
-|+.+..-+.+|+-+.|.|++|+||||++.-+..-+-...| .+.+-.. +.+.+.+..+ ++...+-+.--..+.+.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~~ 100 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLKR 100 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 6888746978980899994799979999999997265533663457640---1111357769999864587101012222
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCC-----CC
Q ss_conf 06989989999999999985993478301488774233499888913889999999983--499879983788-----79
Q 000702 1191 NLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL--KQARILVLDEAT-----AS 1263 (1343)
Q Consensus 1191 NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL--~~~~ILiLDEaT-----s~ 1263 (1343)
+.. +.+++.++.+.. ...-...+.+........ ..+...+... .+++++++|=-+ .+
T Consensus 101 ~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~ 164 (277)
T d1cr2a_ 101 EII-----ENGKFDQWFDEL---------FGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASG 164 (277)
T ss_dssp HHH-----HTSHHHHHHHHH---------HSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC------
T ss_pred CHH-----HHHHHHHHHHHH---------HCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 214-----567788898874---------035214662143310689--9999865432136762599705421203465
Q ss_pred CCH--HHHHHHHHHHHHHC--CCCEEEEECCCCC----------------CC-------CCCCEEEEEEC
Q ss_conf 998--98999999999736--9937998604831----------------00-------13578999959
Q 000702 1264 VDT--ATDNLIQKIIRTEF--KDCTVCTIAHRIP----------------TV-------IDSDLVLVLSD 1306 (1343)
Q Consensus 1264 lD~--~te~~I~~~l~~~~--~~~TvI~IAHRl~----------------ti-------~~~DrIlvl~~ 1306 (1343)
-+. +.-..+.+.++... .+|+|++++|=-. .+ ..+|-++.+..
T Consensus 165 ~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.71 E-value=0.0051 Score=36.01 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=67.2
Q ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEEEEECCCCCCC-CCCHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 3584198099999389988899999996586-57774899879289982666566-865889861399999889999999
Q 000702 474 SMKVDRGMRVAVCGMVGSGKSSLLSCILGEI-PKISGEVRLCGTAAYVSQSAWIQ-SGNIEENILFGSPMDKAKYKKVIH 551 (1343)
Q Consensus 474 ~l~i~~g~~~~ivG~~GsGKStll~~llg~~-~~~~G~i~~~g~i~yv~Q~~~l~-~~ti~~NI~fg~~~~~~~~~~~~~ 551 (1343)
++.+. ++...|.|||.+||||+++.+.=-. -...|. .++..-+-++.-..++ .-...|++.-|.. ....++-+
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~-~vpA~~~~i~~~d~I~~~~~~~d~~~~~~S---tF~~el~~ 104 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGS-FVPAEEAHLPLFDGIYTRIGASDDLAGGKS---TFMVEMEE 104 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC-CBSSSEEEECCCSEEEEECCC------CCS---HHHHHHHH
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-EEECCCEEEEECCEEEEEECCCCCCCCCCC---HHHHHHHH
T ss_conf 58847-86799978873453234556589999985250-461375199401169999877760237830---78986788
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEE
Q ss_conf 9603426835028985313789887781899999999985069988988088888798889999999997852-995899
Q 000702 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL-ANKTVI 630 (1343)
Q Consensus 552 ~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~T~i 630 (1343)
. ..-+. -..+..++|+||...+-|+..+..+....+..+. .+.+++
T Consensus 105 ~---~~il~------------------------------~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i 151 (224)
T d1ewqa2 105 V---ALILK------------------------------EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTL 151 (224)
T ss_dssp H---HHHHH------------------------------HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred H---HHHHC------------------------------CCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEE
T ss_conf 9---87750------------------------------28977278554545686233200258888888862376137
Q ss_pred EEECCCCCC
Q ss_conf 980599962
Q 000702 631 FVTHQVEFL 639 (1343)
Q Consensus 631 lvth~~~~l 639 (1343)
++||..+..
T Consensus 152 ~tTH~~eL~ 160 (224)
T d1ewqa2 152 FATHYFELT 160 (224)
T ss_dssp EECCCHHHH
T ss_pred EEEECHHHH
T ss_conf 865202333
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.02 Score=31.29 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 818999999999850699889880888887988899999999978529958999805999624
Q 000702 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP 640 (1343)
Q Consensus 578 SgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~l~ 640 (1343)
...++..+..+...+.++++++++-....-+.....+.+...+.....++.+|+|.+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
T ss_conf 520247899999998741332011025654203455544455542014101020465444335
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.025 Score=30.65 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=62.2
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEECCCCCCCCCCHHHHHC-CCCCCCHHHHHHHHH
Q ss_conf 4198099999389988899999996586----57774899879289982666566865889861-399999889999999
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEI----PKISGEVRLCGTAAYVSQSAWIQSGNIEENIL-FGSPMDKAKYKKVIH 551 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~----~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~-fg~~~~~~~~~~~~~ 551 (1343)
+.+|+++.|.|+.|+|||||+..++-.+ +...+...-.+.+.|+.-+... ..+++.+. .+...+.........
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~--~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH--HHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 558958999928999899999999999976997211123578736898512349--999999999862368666531233
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHHC--
Q ss_conf 96034268350289853137898877818999999999850699889880888887-----98889999999997852--
Q 000702 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV-----DAHTGSELFKEYIMTAL-- 624 (1343)
Q Consensus 552 ~~~l~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~sal-----D~~~~~~i~~~~~~~~~-- 624 (1343)
.+...+ ..+...... -....-.+. .-..+++++++|-..... |......++.. +..+.
T Consensus 104 ------~~~~~~-----~~~~~~~~~--~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~la~~ 168 (274)
T d1nlfa_ 104 ------GLLIQP-----LIGSLPNIM--APEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEAIAAD 168 (274)
T ss_dssp ------HEEECC-----CTTSCCCTT--SHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHHHHHH
T ss_pred ------CCEECC-----CCCCCCHHH--HHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHHHHHC
T ss_conf ------323214-----567420357--899999988-7526765896281354226652322568999988-7777644
Q ss_pred CCCEEEEEECC
Q ss_conf 99589998059
Q 000702 625 ANKTVIFVTHQ 635 (1343)
Q Consensus 625 ~~~T~ilvth~ 635 (1343)
.+.|++++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.21 E-value=0.014 Score=32.63 Aligned_cols=110 Identities=22% Similarity=0.192 Sum_probs=65.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 198099999389988899999996586577748-9987928998266656686588986139999988999999996034
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE-VRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLK 556 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~-i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l~ 556 (1343)
.++.++.+.||+||||||.+.+++.+++..... +++...+-| ...+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~------~~~~--------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF------DIDG--------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS------CCSS---------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC------CCCC---------------------------
T ss_conf 4105489876787774477999866625787469996267434------5678---------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 26835028985313789887781899999999985069988988088888798889999999997852995899980599
Q 000702 557 KDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636 (1343)
Q Consensus 557 ~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~ 636 (1343)
--++.+.+. .|+..--+|..++-++||+++..|.- |..+++..++. ...|..|+-.-|--
T Consensus 203 --------~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 203 --------IGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTN 262 (401)
T ss_dssp --------SEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCS
T ss_pred --------CCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH----HHCCCEEEEEECCC
T ss_conf --------870265587-----67799999999984138889845768---75999999999----72498589983367
Q ss_pred CCCC
Q ss_conf 9624
Q 000702 637 EFLP 640 (1343)
Q Consensus 637 ~~l~ 640 (1343)
+-..
T Consensus 263 ~a~~ 266 (401)
T d1p9ra_ 263 TAVG 266 (401)
T ss_dssp SSHH
T ss_pred CHHH
T ss_conf 6676
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.034 Score=29.54 Aligned_cols=32 Identities=31% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 410010168429979999959999888999998312
Q 000702 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1112 ~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
.++.| +.||+.+-|+|++|+|||||+..|.--
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 98689----558958999928999899999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0032 Score=37.57 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 980999993899888999999965865777489
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i 511 (1343)
+|+.++++|+||.|||||+++|+|......|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.83 E-value=0.0042 Score=36.68 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9979999959999888999998312479863699
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII 1156 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~ 1156 (1343)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.71 E-value=0.0055 Score=35.74 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999389988899999996586
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
=.++|+|++|+|||||+++|+|.-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.68 E-value=0.051 Score=28.17 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 299799999599998889999983124798636
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~ 1154 (1343)
.++--|-|.|+|||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0038 Score=37.01 Aligned_cols=28 Identities=43% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999938998889999999658657774
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISG 509 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G 509 (1343)
.++|+|++|+|||||+|+|.|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.31 E-value=0.0064 Score=35.26 Aligned_cols=42 Identities=33% Similarity=0.477 Sum_probs=33.4
Q ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 016842997999995999988899999831247986369992
Q 000702 1117 ITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158 (1343)
Q Consensus 1117 isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~Id 1158 (1343)
+..-++.+..+.|+|+|||||||++++|++.+++..=-|.|.
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 999998378889994035662578999865301456233113
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.063 Score=27.44 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99993899888999999965865
Q 000702 483 VAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+.+.||.|+||||+.++++.++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999988999999997622
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.30 E-value=0.017 Score=31.93 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999993899888999999965
Q 000702 481 MRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg 502 (1343)
+++.++|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.26 E-value=0.006 Score=35.48 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|++|+|||||+++|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.22 E-value=0.0057 Score=35.64 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.027 Score=30.37 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=40.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHH-H---CCCCC--CCHHHHHHHHH
Q ss_conf 99999389988899999996586577748998792899826665668658898-6---13999--99889999999
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEEN-I---LFGSP--MDKAKYKKVIH 551 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~N-I---~fg~~--~~~~~~~~~~~ 551 (1343)
+++|.|++||||||+.+.|...+....+ +-++..++++.+......++. = .+|.| +|-+...+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~ 153 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999689999876899999999730468----99659995215689845888836876688167631999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.12 E-value=0.018 Score=31.71 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=71.7
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 41980999993899888999999965865777489987928998266656686588986139999988999999996034
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLK 556 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l~ 556 (1343)
+++|+++.|.|++|||||+|..-++-...... ..+.|++-+- + ...+.+. ++.+.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~------~~~~~is~e~-----~------------~~~~~~~--~~~~~ 77 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANK------ERAILFAYEE-----S------------RAQLLRN--AYSWG 77 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTT------CCEEEEESSS-----C------------HHHHHHH--HHTTS
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC------CCCCEEECCC-----C------------HHHHHHH--HHHCC
T ss_conf 86984999991899999999999999998723------2441121267-----9------------9999999--99829
Q ss_pred HHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 26835-0289853137898877818999999999850-699889880888887---9888999999999785-2995899
Q 000702 557 KDLEL-FSHGDQTIIGDRGINLSGGQKQRVQLARALY-QDADIYLLDDPFSAV---DAHTGSELFKEYIMTA-LANKTVI 630 (1343)
Q Consensus 557 ~d~~~-l~~g~~t~ige~g~~LSgGQkqRi~LARal~-~~~~illLDep~sal---D~~~~~~i~~~~~~~~-~~~~T~i 630 (1343)
.+... ...+....+........ .+...-.+.+++. .++++++.|...+.. +............... ..+.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 78 MDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp CCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 98699854586179973000101-79999999999984088533220431430489999999999999999998698399
Q ss_pred EEECCCC----------CCC-CCCEEEEEEC
Q ss_conf 9805999----------624-5988999939
Q 000702 631 FVTHQVE----------FLP-AADFILVLKE 650 (1343)
Q Consensus 631 lvth~~~----------~l~-~~d~i~~l~~ 650 (1343)
++.|... .+. .+|-|+.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9985675125544577640464216999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.11 E-value=0.0052 Score=35.96 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=23.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 809999938998889999999658657
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
|++++|+||+||||||+.+.|..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0076 Score=34.67 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.97 E-value=0.029 Score=30.07 Aligned_cols=32 Identities=34% Similarity=0.333 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999959999888999998312479863699927
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
+.|.|+|.+||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.97 E-value=0.0027 Score=38.13 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 980999993899888999999965865777489
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i 511 (1343)
+|+.++++|+||.|||||+++|+|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.96 E-value=0.0059 Score=35.50 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 979999959999888999998312479
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
|..|.|+||||||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.91 E-value=0.0095 Score=33.89 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98099999389988899999996586
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.|++++|.|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.85 E-value=0.088 Score=26.32 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCCCCEE-EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1001016-84299799999599998889999983124
Q 000702 1113 VLHGITC-AFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1113 vL~~isf-~I~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
-|+.+-- -+++|.-+-|.|++|+|||+++.-+..-.
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7988456898698499999189999999999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.76 E-value=0.092 Score=26.16 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=58.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999938998889999999658657774899879289982666566865889861399999889999999960342683-
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLE- 560 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l~~d~~- 560 (1343)
-++|+|+.|+|||||..+|+..... +... |++.+.... ..+++++.++-+. ...-..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~----~~~~--------------g~v~~g~~~-~D~~~~E~~r~~t---i~~~~~~ 61 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGA----KERR--------------GRVEEGTTT-TDYTPEAKLHRTT---VRTGVAP 61 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTS----SSSC--------------CCGGGTCCS-SCCSHHHHHTTSC---CSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC----CHHH--------------CCCHHCCCC-CCCHHHHHHHCCE---EEEECCC
T ss_conf 9999948898099999999997097----5530--------------662222113-5626988873876---8751022
Q ss_pred -HCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf -502898531378988-77818999999999850699889880888887988899999999978529958999805999
Q 000702 561 -LFSHGDQTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVE 637 (1343)
Q Consensus 561 -~l~~g~~t~ige~g~-~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~ 637 (1343)
.+.+---+.++..|. +++|--.. ++. ..+.-|++.| +..++-+.+.+.+ +.+.. .+..++++-++++
T Consensus 62 ~~~~~~~~n~iDtPGh~dF~~e~~~--al~---~~D~avlvvd-a~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D 130 (267)
T d2dy1a2 62 LLFRGHRVFLLDAPGYGDFVGEIRG--ALE---AADAALVAVS-AEAGVQVGTERAW-TVAER---LGLPRMVVVTKLD 130 (267)
T ss_dssp EEETTEEEEEEECCCSGGGHHHHHH--HHH---HCSEEEEEEE-TTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGG
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHH--HHC---CCCCEEEEEE-CCCCCCCHHHHHH-HHHHH---CCCCCCCCCCCCC
T ss_conf 2234321068806815543355654--312---4673389842-3577421157887-76554---0443101333202
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.70 E-value=0.095 Score=26.05 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.0
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 419809999938998889999999658
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~ 503 (1343)
-++.+++.++|++||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.62 E-value=0.04 Score=29.05 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.4
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 41980999993899888999999965
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg 502 (1343)
+++|+++.|.|++|||||+|..-++-
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 55887999985898988999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.0056 Score=35.68 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 09999938998889999999658657774899
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPKISGEVR 512 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~~~~G~i~ 512 (1343)
+.+.|+|++|+|||||++.++..+....+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 69999889997199999999999997799799
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.015 Score=32.33 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=24.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9809999938998889999999658657
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.|.+++|+||+|+||+||.+.|+-..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.49 E-value=0.11 Score=25.70 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=62.6
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 84198099999389988899999996586577748998792899826665668658898613999998899999999603
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL 555 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l 555 (1343)
.+++..-+.+.||+|+|||+|.+++++++.. .+-++. .
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~------------------------------~--- 74 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK------------------------------G--- 74 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC------------------------------H---
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE------------------------------H---
T ss_conf 9998875788789987630477887877189---------479988------------------------------7---
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHH---
Q ss_conf 4268350289853137898877818999999999850699889880888887988---------8999999999785---
Q 000702 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH---------TGSELFKEYIMTA--- 623 (1343)
Q Consensus 556 ~~d~~~l~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~salD~~---------~~~~i~~~~~~~~--- 623 (1343)
.++.. ...| ...++-|-.+.+|-...|-|+++||.-+..... ..+.+....+...
T Consensus 75 -~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 141 (265)
T d1r7ra3 75 -PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 141 (265)
T ss_dssp -HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--
T ss_pred -HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -99525------3165------1589999999999863984356875463245578767887379999999999996286
Q ss_pred C--CCCEEEEEECCCCCCC
Q ss_conf 2--9958999805999624
Q 000702 624 L--ANKTVIFVTHQVEFLP 640 (1343)
Q Consensus 624 ~--~~~T~ilvth~~~~l~ 640 (1343)
. .+.-+|..||+++.++
T Consensus 142 ~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIID 160 (265)
T ss_dssp ----CCEEEECCBSCTTTS
T ss_pred CCCCCEEEEEECCCCHHCC
T ss_conf 7779989999179922279
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.044 Score=28.68 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=23.6
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 41980999993899888999999965865
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+++..-+.+.||+|||||++.+++..++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.43 E-value=0.012 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.++|+|.+|||||||+..|+.++..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.43 E-value=0.0044 Score=36.53 Aligned_cols=53 Identities=25% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECC
Q ss_conf 997999995999988899999831247986369992730699996788520506557
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQ 1179 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQ 1179 (1343)
+|++..++|.||+|||||+++|.+-.....|.|.-.. .-+.|+-|.+--+-+.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~~ 148 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHTS 148 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEECC
T ss_conf 3564999877873487898751517676403555335----8971244347888627
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.41 E-value=0.02 Score=31.40 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9979999959999888999998312479863699927
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
.|+.|.|+|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.011 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999599998889999983124798636999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIII 1157 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~I 1157 (1343)
.++|+|.+|||||||++.|.+-+....-++.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999189998999999999999977976877
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.013 Score=32.89 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9809999938998889999999658657
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
+.-.++|+|+.|+|||||+..+...+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.34 E-value=0.036 Score=29.36 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=25.4
Q ss_pred EEECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5841980999993899888999999965865
Q 000702 475 MKVDRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 475 l~i~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+.-++|..+.+.|.+||||||+.+.|...+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8589986999989999998999999998877
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.088 Score=26.32 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 29979999959999888999998312479863699927306999967885205065577643677544306989989999
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDR 1201 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ 1201 (1343)
+.-+-|-++|..||||||+++.++.- .|.+.|+. +++++ -.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH---------------------------HH
T ss_conf 99989999899999899999999976----59789760--------77778---------------------------88
Q ss_pred HHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEEE
Q ss_conf 9999999859934783014887742334998889138899-99999983499879983
Q 000702 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQL-VSLGRALLKQARILVLD 1258 (1343)
Q Consensus 1202 ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQr-l~LARAlL~~~~ILiLD 1258 (1343)
.+.+.++. .+..|.+..+ ++.|.+..+|+. +.+||..=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIi--D~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVI--DNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEE--ESCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------9977999555--176799999999999998558887999948
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.014 Score=32.55 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=40.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHH--HCCCC----CCCC
Q ss_conf 99999599998889999983124798636999273069999678852050655776436775443--06989----9899
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRC--NLDPL----EEHS 1199 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~--NLdp~----~~~s 1199 (1343)
.|||.|.+||||||+.+.|..++.-..+. .++.+|++|.+......++ ++... +.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888836876688167631
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999985
Q 000702 1200 DREIWEALDKS 1210 (1343)
Q Consensus 1200 d~ei~~aL~~~ 1210 (1343)
-+.+.+.|...
T Consensus 145 ~~~L~~~L~~l 155 (308)
T d1sq5a_ 145 MHRLVKFVSDL 155 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.24 E-value=0.014 Score=32.56 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|++|+|||||+++|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.21 E-value=0.013 Score=32.84 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
+++|.|++|||||||.+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.19 E-value=0.011 Score=33.27 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999938998889999999658
Q 000702 483 VAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~ 503 (1343)
++|+|++++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.016 Score=32.14 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 99999389988899999996586577748998792899826665668
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQS 528 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~ 528 (1343)
+++|.|++||||||+.+.|.-.+...... ...-.+..++++.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410134-57884399934653224
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.15 E-value=0.12 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=28.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 198099999389988899999996586577748998792899826665
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~ 525 (1343)
+....++++||+|+||||.+.-|.-.+. ..| .+++.+.=+.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~Dt~ 51 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-----FKVGLVGADVY 51 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH-HTT-----CCEEEEECCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEEECC
T ss_conf 9998999989999998999999999999-779-----93699972023
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.13 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=25.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 842997999995999988899999831247
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.+++...+-+.|+.|+|||++++++.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.019 Score=31.59 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999959999888999998312
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
|=||+++|++|+|||||++.|.+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.94 E-value=0.021 Score=31.23 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|++|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.91 E-value=0.022 Score=31.06 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|++|+|||||++.|.|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.88 E-value=0.016 Score=32.07 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.022 Score=31.10 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.11 Score=25.60 Aligned_cols=45 Identities=9% Similarity=0.313 Sum_probs=34.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 9987998378879998989999999997369937998604831001
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVI 1296 (1343)
Q Consensus 1251 ~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~ 1296 (1343)
+.+++++||+-. +..+....+.+.+.+...++.+|+++++++-+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-454311122100221356643000102111002
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.022 Score=31.07 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE------------ECCEECCCCCHHHHHHC
Q ss_conf 9979999959999888999998312479863699------------92730699996788520
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRII------------IDNIDISTIGLHDLRSR 1173 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~------------IdG~di~~i~l~~LR~~ 1173 (1343)
.|..+.|+||||+||+||.+.|+.-++...-... +||+|..-++.+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf 980999999999999999999986398668427888763678865543212334328999987
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.011 Score=33.32 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=16.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999389988899999996586
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
-.++++|++++|||||+++|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.69 E-value=0.014 Score=32.61 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999389988899999996586
Q 000702 483 VAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~ 504 (1343)
++|+|++++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.67 E-value=0.019 Score=31.59 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 799999599998889999983124798
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPA 1151 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~ 1151 (1343)
..+||+|.+|||||||+..|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.65 E-value=0.025 Score=30.54 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1980999993899888999999965865
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
++|-++.++|.+||||||+.+.|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.15 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 198099999389988899999996586
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
++...++|+||.||||||+.+.|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.47 E-value=0.018 Score=31.64 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099999389988899999996586
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
-+.++|+|++|||||||.+.|...+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.44 E-value=0.037 Score=29.27 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=21.7
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 506998898808888879888999999999785299589998059996
Q 000702 591 LYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEF 638 (1343)
Q Consensus 591 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~~~ 638 (1343)
-..+.+++|+|-. ..... ....+.+.+ .. .++.+++|-++.+.
T Consensus 132 ~~~~~d~~l~~~~-~~~~~-~d~~l~~~l-~~--~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 132 KFYEYDFFIIISA-TRFKK-NDIDIAKAI-SM--MKKEFYFVRTKVDS 174 (400)
T ss_dssp TGGGCSEEEEEES-SCCCH-HHHHHHHHH-HH--TTCEEEEEECCHHH
T ss_pred HHHCCEEEEEECC-CCCCH-HHHHHHHHH-HH--CCCCEEEEEECCCC
T ss_conf 3322659999658-88878-899999999-97--69987999708632
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.074 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.9
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8419809999938998889999999658657774
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G 509 (1343)
-+++|.++-+.|++|||||||...++.......|
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~ 83 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 83 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9667358998057774789999999999870898
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.33 E-value=0.17 Score=24.15 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999959999888999998312
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
+=+|||+|++|+|||||+++|++-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 888999999999999999999778
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.27 E-value=0.17 Score=24.08 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=27.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 198099999389988899999996586577748998792899826665
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~ 525 (1343)
+++..++++||+|+||||.+.-|...+. ..| .+++.+.-+.+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-----~kV~lit~Dt~ 45 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-----KKVMFCAGDTF 45 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-----CCEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECCC
T ss_conf 9977999989999988999999999999-779-----90799981366
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.25 E-value=0.041 Score=28.91 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2997999995999988899999831247
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
++|-.|-++|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.23 E-value=0.036 Score=29.34 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1980999993899888999999965865
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
|+|-.++|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.23 E-value=0.046 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.+.+.||+|+||||++++++.++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.19 E-value=0.033 Score=29.61 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
+|+++|+||+|||||+++|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.13 E-value=0.041 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999993899888999999965865
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.12 E-value=0.058 Score=27.72 Aligned_cols=123 Identities=9% Similarity=0.060 Sum_probs=56.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999938998889999999658657774899879289982666566865889861399999889999999960342683-
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLE- 560 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l~~d~~- 560 (1343)
-++|+|++++|||||+..|++......+ .| ++++.... ...++|+-+. ..-|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~g~~~~----~~--------------~~~~~~~~-d~~~eE~~rg------iTi~~~~ 59 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVAAAENP----NV--------------EVKDYGDI-DKAPEERARG------ITINTAH 59 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHSCT----TS--------------CCCCHHHH-SCSHHHHHHT------CCCSCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCC----CC--------------CHHHHHHC-CCCHHHHCCC------EEEEEEE
T ss_conf 9999947898499999999998523047----74--------------11354311-3455775587------5798437
Q ss_pred ---HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf ---50289853137898877818999999999850-69988988088888798889999999997852995899980599
Q 000702 561 ---LFSHGDQTIIGDRGINLSGGQKQRVQLARALY-QDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636 (1343)
Q Consensus 561 ---~l~~g~~t~ige~g~~LSgGQkqRi~LARal~-~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth~~ 636 (1343)
.+.+-.-+.++..|..=-.+. ..||+- .+.-|++.| ...++-.++.+++ ..+ ..+.-+.+|++-+++
T Consensus 60 ~~~~~~~~~i~iiDtPGh~df~~~-----~~~~~~~aD~avlVvd-a~~Gv~~qt~~~~-~~~--~~~gi~~iiv~iNK~ 130 (204)
T d2c78a3 60 VEYETAKRHYSHVDCPGHADYIKN-----MITGAAQMDGAILVVS-AADGPMPQTREHI-LLA--RQVGVPYIVVFMNKV 130 (204)
T ss_dssp EEEECSSCEEEEEECCCSGGGHHH-----HHHHHTTCSSEEEEEE-TTTCCCHHHHHHH-HHH--HHTTCCCEEEEEECG
T ss_pred EEEEECCEEEEEEECCCCHHHHHH-----HHHHHHHCCEEEEEEE-CCCCCCHHHHHHH-HHH--HHCCCCEEEEEEEEC
T ss_conf 999708818999828982654999-----9999987899999998-9999847899999-999--985999389999853
Q ss_pred CC
Q ss_conf 96
Q 000702 637 EF 638 (1343)
Q Consensus 637 ~~ 638 (1343)
+.
T Consensus 131 D~ 132 (204)
T d2c78a3 131 DM 132 (204)
T ss_dssp GG
T ss_pred CC
T ss_conf 66
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.10 E-value=0.027 Score=30.37 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1980999993899888999999965865
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
++.-.++++|++|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.045 Score=28.60 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 198099999389988899999996586
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.06 E-value=0.034 Score=29.58 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
-++|+|++.+|||||+++|.|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.05 E-value=0.034 Score=29.52 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=23.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 80999993899888999999965865777
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIPKIS 508 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~~~~ 508 (1343)
+++++|.|+.||||||+.+.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.00 E-value=0.037 Score=29.27 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999998312479
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.92 E-value=0.14 Score=24.65 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=33.3
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCC
Q ss_conf 841980999993899888999999965865777489987928998266
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQS 523 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~ 523 (1343)
-++.|.++-|.|+.|||||+|...++....... +.+.|+.-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEECC
T ss_conf 866754789805876522799999999997079------989999887
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.89 E-value=0.036 Score=29.32 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|.+|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.86 E-value=0.061 Score=27.57 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++|+|+.|||||||++.|+....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.099 Score=25.91 Aligned_cols=22 Identities=50% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.80 E-value=0.035 Score=29.50 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999988899999831247
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.+|+|.|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.77 E-value=0.04 Score=28.98 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2997999995999988899999831247
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
++|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.041 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|+|++|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.043 Score=28.74 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299799999599998889999983124
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.54 E-value=0.056 Score=27.87 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.|+|+|..|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.52 E-value=0.042 Score=28.84 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999993899888999999965865
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++.|+|++||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.052 Score=28.13 Aligned_cols=44 Identities=30% Similarity=0.394 Sum_probs=29.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCC
Q ss_conf 9999959999888999998312479863699927306999967885205065577643
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNL 1183 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~L 1183 (1343)
.|||.|++||||||+.+.|...+..... + .-...+.+++||.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~-------~-------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV-------D-------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS-------C-------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC-------C-------CCCCCEEEEECCCCC
T ss_conf 9999899978799999999999641013-------4-------578843999346532
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.044 Score=28.71 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999993899888999999965865
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.+.++|+||+|+||+||.+.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.39 E-value=0.047 Score=28.49 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|++|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.37 E-value=0.22 Score=23.20 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCC
Q ss_conf 4998799837887999898999999999736--993799860483100
Q 000702 1250 KQARILVLDEATASVDTATDNLIQKIIRTEF--KDCTVCTIAHRIPTV 1295 (1343)
Q Consensus 1250 ~~~~ILiLDEaTs~lD~~te~~I~~~l~~~~--~~~TvI~IAHRl~ti 1295 (1343)
.+..++++||.-.+-|++--..+-.++-+.+ .+++++++||..+..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 977278554545686233200258888888862376137865202333
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.36 E-value=0.047 Score=28.43 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.029 Score=30.06 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++|+||+||||+||.+.|+.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.30 E-value=0.05 Score=28.26 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999995999988899999831247
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
...|.|.|.+||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.23 Score=23.02 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=28.5
Q ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCC
Q ss_conf 35841980999993899888999999965865777489987928998266
Q 000702 474 SMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQS 523 (1343)
Q Consensus 474 ~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~ 523 (1343)
|++-++-..++++||+|+||||.+.-|.-.+. .+| .+++.+.-+
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~D 46 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQG-----KSVMLAAGD 46 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH-TTT-----CCEEEECCC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEECC
T ss_conf 77899997999989999998999999999999-779-----947998232
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.05 E-value=0.056 Score=27.89 Aligned_cols=22 Identities=45% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=0.088 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99993899888999999965865
Q 000702 483 VAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+.+.||.|+||||++++++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.02 E-value=0.15 Score=24.60 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.3
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4198099999389988899999996586
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
++++..+.|.||.||||||+.+.|...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.064 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999599998889999983124
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
..-|.|+||||+||+||.+.|++-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.96 E-value=0.066 Score=27.32 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
+|+++|++|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.24 Score=22.84 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=26.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 42997999995999988899999831247986369992730
Q 000702 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID 1161 (1343)
Q Consensus 1121 I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~d 1161 (1343)
+++...+-+.|+.|+|||++++++.+.+... -+.++.-+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~ 80 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHH
T ss_conf 9988867866899888228999999982998--79988699
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.012 Score=33.16 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|++|+|||||+++|.|+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.93 E-value=0.045 Score=28.61 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 97999995999988899999831247986369
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRI 1155 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I 1155 (1343)
+..|+|.|..||||||+++.|...+......+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.92 E-value=0.072 Score=27.03 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.85 E-value=0.055 Score=27.92 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCC
Q ss_conf 9999938998889999999658657774899879289982666566
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ 527 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~ 527 (1343)
+++|.|+.|||||||...|.-.+....|. .-.++.++.+.+..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCCCC
T ss_conf 99837998788999999999999987277---86067635677778
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.73 E-value=0.057 Score=27.79 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999959999888999998312479863699927
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
..|.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.68 E-value=0.051 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|+|++||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.46 E-value=0.068 Score=27.21 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=23.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 809999938998889999999658657
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
...+.++||+||||||+.++|.+++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.46 E-value=0.11 Score=25.50 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=31.8
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8419809999938998889999999658657774899879289982666
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA 524 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~ 524 (1343)
-+++|+++.|.|++|||||+|..-++-........-..++.+.|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.37 E-value=0.094 Score=26.10 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 198099999389988899999996586
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.+...++|+||.||||||+.+.|.-.+
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899489998999998899999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.28 Score=22.39 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=29.9
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHH-HHHH--CCCCEEEEECCCCCCC
Q ss_conf 349987998378879998989999999-9973--6993799860483100
Q 000702 1249 LKQARILVLDEATASVDTATDNLIQKI-IRTE--FKDCTVCTIAHRIPTV 1295 (1343)
Q Consensus 1249 L~~~~ILiLDEaTs~lD~~te~~I~~~-l~~~--~~~~TvI~IAHRl~ti 1295 (1343)
..+..++++||.-.+-+++-...+-.+ ++.. ..++.+++.+|.....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.27 E-value=0.098 Score=25.95 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 198099999389988899999996586
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
|+|-.++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.27 E-value=0.059 Score=27.70 Aligned_cols=44 Identities=32% Similarity=0.573 Sum_probs=28.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCEECCCCCHHHHHH
Q ss_conf 999959999888999998312479-------------8636999273069999678852
Q 000702 1127 IGIVGRTGSGKSTLIQALFRLIEP-------------ACGRIIIDNIDISTIGLHDLRS 1172 (1343)
Q Consensus 1127 vgIVGrTGsGKSTL~~~L~rl~~~-------------~~G~I~IdG~di~~i~l~~LR~ 1172 (1343)
|.|+|+|||||+||++.|+.-.+. ..|+ .||+|..-++......
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHH
T ss_conf 99989999998999999997488662477764268999997--5784324324889999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.1 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.250 Sum_probs=25.3
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 841980999993899888999999965865
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
-+++|+++.|.|++|||||+|..-++....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985997999995899999999999999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.069 Score=27.17 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=46.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CCH-HHH--HHCCEEECCCCCCCCCCH--HHHCCCCCC
Q ss_conf 97999995999988899999831247986369992730699-996-788--520506557764367754--430698998
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDIST-IGL-HDL--RSRLGIIPQDPNLFEGTI--RCNLDPLEE 1197 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~-i~l-~~L--R~~i~iIpQdp~LF~gTI--r~NLdp~~~ 1197 (1343)
.-+|||+|+.|||||||+..|.+.+....-++-+=.+|.++ .+- .-| |-++.-.+.++..|-.+. |.++... .
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~-~ 132 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA-S 132 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH-H
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-H
T ss_conf 328974389999899999999999975698332203777610006515541367887405654101565553444420-3
Q ss_pred CCHHHHHHHHHHCCCC
Q ss_conf 9999999999985993
Q 000702 1198 HSDREIWEALDKSQLG 1213 (1343)
Q Consensus 1198 ~sd~ei~~aL~~~~L~ 1213 (1343)
....+....++.+|.+
T Consensus 133 ~~~~~~~~~~~~~g~d 148 (327)
T d2p67a1 133 QRARELMLLCEAAGYD 148 (327)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 3205789998864998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.16 Score=24.19 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999938998889999999658
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~ 503 (1343)
.-.++++|+.|+|||||++.+.+.
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 338999998992989999999719
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.17 E-value=0.19 Score=23.63 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993899888999999965
Q 000702 482 RVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg 502 (1343)
.++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.084 Score=26.50 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.07 E-value=0.1 Score=25.78 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 29979999959999888999998312479863699927306999967885205065577643677544306989989999
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDR 1201 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ 1201 (1343)
++|=+|.|+|+.||||||+.+.|..-+ |-..|+-- +-+|... ++..-....++..++-+...+++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~g-------dllr~~~----~~~~~~g~~~~~~~~~g~~~~~~ 65 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLATG-------DMLRAMV----ASGSELGKKLKATMDAGKLVSDE 65 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHH-------HHHHHHH----HHTCHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH----HCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 996389998999998899999999986----98577577-------8899887----42674330233132167743330
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000702 1202 EIWEALDK 1209 (1343)
Q Consensus 1202 ei~~aL~~ 1209 (1343)
.+...+..
T Consensus 66 ~v~~~~~~ 73 (190)
T d1ak2a1 66 MVLELIEK 73 (190)
T ss_dssp HHHHHHHH
T ss_pred EEEEEEHH
T ss_conf 24531113
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.07 E-value=0.073 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999993899888999999965865
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.04 E-value=0.081 Score=26.59 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
+|.|+|+.||||||+.+.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.96 E-value=0.087 Score=26.37 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299799999599998889999983124
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
++.-||++||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.95 E-value=0.3 Score=22.10 Aligned_cols=100 Identities=25% Similarity=0.339 Sum_probs=55.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99993899888999999965865777489987928998266656686588986139999988999999996034268350
Q 000702 483 VAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELF 562 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l~~d~~~l 562 (1343)
+.|.|++|+|||-|++++.-++.... -.+.|++-. +. ...+...+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~------~~~~~~~~~---------~~--------~~~~~~~~~~---------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRG------YRVIYSSAD---------DF--------AQAMVEHLKK---------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTT------CCEEEEEHH---------HH--------HHHHHHHHHH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC------CCEEEECHH---------HH--------HHHHHHHHHC----------
T ss_conf 79988899839999999998744676------504884437---------87--------9999999871----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEECCC
Q ss_conf 289853137898877818999999999850699889880888887-98889999999997852-995899980599
Q 000702 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAV-DAHTGSELFKEYIMTAL-ANKTVIFVTHQV 636 (1343)
Q Consensus 563 ~~g~~t~ige~g~~LSgGQkqRi~LARal~~~~~illLDep~sal-D~~~~~~i~~~~~~~~~-~~~T~ilvth~~ 636 (1343)
++.+ -.+..+..++++++||.-.-. +...+..+|. ++.... .++.+|+.+...
T Consensus 86 -----------------~~~~---~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 86 -----------------GTIN---EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp -----------------TCHH---HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred -----------------CCHH---HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf -----------------6626---67898762130101126550586577889999-9998763166389954875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.93 E-value=0.08 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999389988899999996
Q 000702 482 RVAVCGMVGSGKSSLLSCIL 501 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~ll 501 (1343)
+++|+|+.||||||+.+.|-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.92 E-value=0.081 Score=26.60 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++|+||+||||+|+.+.|+.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.003 Score=37.78 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.8
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 30260358419809999938998889999999658
Q 000702 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 469 ~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~ 503 (1343)
.+++.++.+.+| +++|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.05 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+|-.+.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.81 E-value=0.12 Score=25.22 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3026035841980999993899888999999965
Q 000702 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 469 ~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg 502 (1343)
.++..-+.+ .|.-+.|.|++|+||||+...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.11 Score=25.72 Aligned_cols=22 Identities=50% Similarity=0.673 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.32 Score=21.98 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=58.6
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEEEEECCCCCCC--CCCHHHHH-CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999389988899999996---58657774899879289982666566--86588986-139999988999999996034
Q 000702 483 VAVCGMVGSGKSSLLSCIL---GEIPKISGEVRLCGTAAYVSQSAWIQ--SGNIEENI-LFGSPMDKAKYKKVIHACSLK 556 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~ll---g~~~~~~G~i~~~g~i~yv~Q~~~l~--~~ti~~NI-~fg~~~~~~~~~~~~~~~~l~ 556 (1343)
++|+|+.|+|||||+.+|+ |.... .|.. ...|....+.-. .-|++... .+..+..+.....
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~~-~~~~----~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~-------- 86 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIISA-AKAG----EARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKE-------- 86 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHH--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC-CCCC----CCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCC--------
T ss_conf 999968888699999999997798663-5563----232244645677568369678789994267655420--------
Q ss_pred HHHHHCCCCC---CCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 2683502898---531378988-778189999999998506998898808888879888999999999785299589998
Q 000702 557 KDLELFSHGD---QTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632 (1343)
Q Consensus 557 ~d~~~l~~g~---~t~ige~g~-~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilv 632 (1343)
.....++. -+.|+..|. ++++- -.+- .|+ .+.-+++.| +..++-++|.+.+ +.+.. .+..+|++
T Consensus 87 --~~~~~~~~~~~inliDtPGh~dF~~e-v~~a--l~~--~D~allVVd-a~eGv~~qT~~~~-~~a~~---~~~p~i~v 154 (341)
T d1n0ua2 87 --IKQKTDGNSFLINLIDSPGHVDFSSE-VTAA--LRV--TDGALVVVD-TIEGVCVQTETVL-RQALG---ERIKPVVV 154 (341)
T ss_dssp --CSSCCCSSEEEEEEECCCCCCSSCHH-HHHH--HHT--CSEEEEEEE-TTTBSCHHHHHHH-HHHHH---TTCEEEEE
T ss_pred --HHCCCCCCCEEEEEECCCCCHHHHHH-HHHH--HHH--CCCEEEEEE-CCCCCCHHHHHHH-HHHHH---CCCCEEEE
T ss_conf --10023566537999737873889999-9988--752--372499986-5668204699999-99987---69986999
Q ss_pred ECCCC
Q ss_conf 05999
Q 000702 633 THQVE 637 (1343)
Q Consensus 633 th~~~ 637 (1343)
-++++
T Consensus 155 iNKiD 159 (341)
T d1n0ua2 155 INKVD 159 (341)
T ss_dssp EECHH
T ss_pred EECCC
T ss_conf 87726
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.71 E-value=0.095 Score=26.07 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.69 E-value=0.089 Score=26.28 Aligned_cols=150 Identities=16% Similarity=0.112 Sum_probs=64.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE--CCEEEEECCCCCCCCCCHHH----H-HCCCCC-CCHHHHHHHHHH
Q ss_conf 999993899888999999965865-77748998--79289982666566865889----8-613999-998899999999
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP-KISGEVRL--CGTAAYVSQSAWIQSGNIEE----N-ILFGSP-MDKAKYKKVIHA 552 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~-~~~G~i~~--~g~i~yv~Q~~~l~~~ti~~----N-I~fg~~-~~~~~~~~~~~~ 552 (1343)
.++|+|..+||||||+++|+|+-- |.+-...- .-.+-|-.. +....+.... - ...... .+..+....+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHL-PIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEEC-CCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 59998189897999999996899788789754068889999457-76667653065667762688622378999999999
Q ss_pred HH---------HHHHHHHC----C-CCCCCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCC--EEEEECCCCCCCH
Q ss_conf 60---------34268350----2-8985313789887781-------89999999998506998--8988088888798
Q 000702 553 CS---------LKKDLELF----S-HGDQTIIGDRGINLSG-------GQKQRVQLARALYQDAD--IYLLDDPFSAVDA 609 (1343)
Q Consensus 553 ~~---------l~~d~~~l----~-~g~~t~ige~g~~LSg-------GQkqRi~LARal~~~~~--illLDep~salD~ 609 (1343)
.. ...+.... | ....+.|+-.|.+-+. .+.+--.+++...++++ ++...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8899999999978529958999805
Q 000702 610 HTGSELFKEYIMTALANKTVIFVTH 634 (1343)
Q Consensus 610 ~~~~~i~~~~~~~~~~~~T~ilvth 634 (1343)
.....+.+. +.. ...+|++++|+
T Consensus 185 ~~~~~~~~~-~~~-~~~r~i~Vitk 207 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-EGKRTIGVITK 207 (306)
T ss_dssp CSHHHHHHH-HCS-SCSSEEEEEEC
T ss_pred CHHHHHHHH-HCC-CCCEEEEEEEC
T ss_conf 499999997-386-78858999820
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.04 Score=28.98 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999988899999831247
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.58 E-value=0.093 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19809999938998889999999658
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~ 503 (1343)
++.=.++++|..|||||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.083 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999389988899999996586
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
+.+.++|++||||||+.+.|.-.+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.52 E-value=0.33 Score=21.83 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=29.5
Q ss_pred CEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 0358419809999938998889999999658657774899879289982666
Q 000702 473 ISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA 524 (1343)
Q Consensus 473 i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~ 524 (1343)
+|+.-.+...++++||+|+||||.+.-|.-.+. ..| .+++.+.=+.
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~Dt 49 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAADT 49 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEECT
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECC
T ss_conf 767999998999989999988999999999999-779-----9069996013
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.12 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19809999938998889999999658657
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.41 E-value=0.1 Score=25.87 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999389988899999996
Q 000702 482 RVAVCGMVGSGKSSLLSCIL 501 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~ll 501 (1343)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.38 E-value=0.1 Score=25.89 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.+||+|++.+|||||+++|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.13 Score=25.03 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=31.7
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 84198099999389988899999996586577748998792899826665
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW 525 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~ 525 (1343)
-+++|+++.|.|++|||||+|...++...............+.|.....-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 82 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHH
T ss_conf 97689799998899887889999999999744431666624887401777
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.31 E-value=0.093 Score=26.14 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|+|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.1 Score=25.82 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999988899999831247
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
..|-++|++||||||+.++|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.075 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
++++++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.23 E-value=0.062 Score=27.51 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.13 E-value=0.071 Score=27.07 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999888999998312
Q 000702 1127 IGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1127 vgIVGrTGsGKSTL~~~L~rl 1147 (1343)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.13 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9809999938998889999999658657
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
+|.+++|-|..||||||+.+.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.10 E-value=0.098 Score=25.96 Aligned_cols=122 Identities=15% Similarity=0.231 Sum_probs=58.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0999993899888999999965---8657774899879289982666566865889861399999889999999960342
Q 000702 481 MRVAVCGMVGSGKSSLLSCILG---EIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg---~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI~fg~~~~~~~~~~~~~~~~l~~ 557 (1343)
.-++|+|+.|||||||..+|+- ..+. .|++.- ..+ +. .+++++.++ ......
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~~---------~~~-----~~-------D~~~~E~~r---~~si~~ 61 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVHE---------GAA-----TM-------DFMEQERER---GITITA 61 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-----------------------------------------C---CCCCCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCEEC---------CCE-----EE-------ECCHHHHHC---CCCCCC
T ss_conf 29999958989989999999996485340-233651---------846-----98-------565888751---886001
Q ss_pred HHHH--CCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 6835--02898531378988-77818999999999850699889880888887988899999999978529958999805
Q 000702 558 DLEL--FSHGDQTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634 (1343)
Q Consensus 558 d~~~--l~~g~~t~ige~g~-~LSgGQkqRi~LARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~T~ilvth 634 (1343)
.+.. +.+.--+.++..|. .+++--..=+. ..+.-|++.| +..++.+.|. .+|+.+. ..+.-+|++-+
T Consensus 62 ~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~-----~~D~avlVvd-a~~Gv~~~T~-~~w~~a~---~~~lP~i~fIN 131 (276)
T d2bv3a2 62 AVTTCFWKDHRINIIDAPGHVDFTIEVERSMR-----VLDGAIVVFD-SSQGVEPQSE-TVWRQAE---KYKVPRIAFAN 131 (276)
T ss_dssp SEEEEEETTEEEEEECCCSSSSCSTTHHHHHH-----HCCEEEEEEE-TTTSSCHHHH-HHHHHHH---TTTCCEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCHHHHHHHHHHHHH-----HHHHEEEECC-CCCCCCHHHH-HHHHHHH---HCCCCEEEEEE
T ss_conf 12343159838999527860226999999999-----6300577322-5677446699-9999999---85999799986
Q ss_pred CCC
Q ss_conf 999
Q 000702 635 QVE 637 (1343)
Q Consensus 635 ~~~ 637 (1343)
+++
T Consensus 132 KmD 134 (276)
T d2bv3a2 132 KMD 134 (276)
T ss_dssp CTT
T ss_pred CCC
T ss_conf 445
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.09 E-value=0.11 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.082 Score=26.54 Aligned_cols=27 Identities=44% Similarity=0.538 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999988899999831247
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.00 E-value=0.12 Score=25.32 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999938998889999999658
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~ 503 (1343)
+.++|+|+.|+|||||++.+.+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.00 E-value=0.12 Score=25.36 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 138899999999834998--79983788799989899999999973699379986048
Q 000702 1236 VGQRQLVSLGRALLKQAR--ILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291 (1343)
Q Consensus 1236 ~GQrQrl~LARAlL~~~~--ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHR 1291 (1343)
..+.+-..+++.+++++. |+....++.....+....+.+.+... ..+|++++++=
T Consensus 152 ~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 5899999999999827775168763256310034999999973867-88589998204
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.16 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 84299799999599998889999983124
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
-+++|+.+-|.|++|+|||+|..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.93 E-value=0.12 Score=25.34 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.91 E-value=0.11 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+.-+++|-|..||||||+++.|...+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.86 E-value=0.094 Score=26.09 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 99799999599998889999983124798636999273069999678852050655776436775443069899899999
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDRE 1202 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~e 1202 (1343)
+-..|.|+|+.||||||+++.|..-| |-+.|+.- +-+|..+ .+...-....++.-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000232036
Q ss_pred HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999998599347830148877423349988891388999999998349987998378
Q 000702 1203 IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260 (1343)
Q Consensus 1203 i~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILiLDEa 1260 (1343)
+...+...-..... ..-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~----~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVK----ANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHC----CCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 78999999886400----3777535404---313689999999861545543125798
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.26 Score=22.64 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|+.|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.82 E-value=0.12 Score=25.13 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 979999959999888999998312479863699927
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
...|.|+|+.||||||+.+.|..-+ |-+.|+.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~~ 37 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEECH
T ss_conf 9489998999998899999999997----9926721
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.78 E-value=0.08 Score=26.63 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599998889999983124
Q 000702 1127 IGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1127 vgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
|.|+|||||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.76 E-value=0.054 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 980999993899888999999965865777489987928998266656
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l 526 (1343)
+.-+++|.|++||||||+.+.+...+... +-+.+.++|+.+.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 88899998999780999999999997156------9976999477787
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.26 Score=22.69 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|..|+|||||++.+++.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.75 E-value=0.12 Score=25.19 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
||+|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.73 E-value=0.12 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.71 E-value=0.19 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
||.++|+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.65 E-value=0.22 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
++.-+.++||+|||||.|.++++.++.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.57 E-value=0.16 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19809999938998889999999658657
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.+|.+++|-|..||||||+.+.|...+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.52 E-value=0.13 Score=24.97 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.40 E-value=0.1 Score=25.85 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 42997999995999988899999831247986369992730699996788520506557764367754430698998999
Q 000702 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSD 1200 (1343)
Q Consensus 1121 I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd 1200 (1343)
++.+..|-|.|+.||||||+.+.|..-| |-..|+.-| -+|..+. ..+ ....++.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~---~~~-~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVS---SGS-ARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHH---HTC-HHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHHH---HHH-HHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------8999998---767-651456777763137762
Q ss_pred HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999999998599347830148877423349988891388999999998349987998378
Q 000702 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260 (1343)
Q Consensus 1201 ~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILiLDEa 1260 (1343)
+.+...+... +...+...+..+-++ +.....|--.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2244102456-----640322356602431---110157899999983775200003331
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.40 E-value=0.14 Score=24.85 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+++|||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.30 E-value=0.13 Score=25.10 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999938998889999999658
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~ 503 (1343)
=.++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.27 E-value=0.12 Score=25.28 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.|+|-|..||||||+++.|.+.+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.27 E-value=0.14 Score=24.80 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+|||+|++.||||||+++|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.24 E-value=0.19 Score=23.77 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=31.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 429979999959999888999998312479--863699927306
Q 000702 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEP--ACGRIIIDNIDI 1162 (1343)
Q Consensus 1121 I~~GekvgIVGrTGsGKSTL~~~L~rl~~~--~~G~I~IdG~di 1162 (1343)
=++|-.|=+.|.+|||||||.+.|...+.. ..-.+.+||-++
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 89986999989999998999999998877742750899753678
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.18 E-value=0.41 Score=21.07 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=62.8
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHH-CCCCCCCHHHHHHHHHHHH
Q ss_conf 841980999993899888999999965865777489987928998266656686588986-1399999889999999960
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENI-LFGSPMDKAKYKKVIHACS 554 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~~NI-~fg~~~~~~~~~~~~~~~~ 554 (1343)
-+++|+++.|.|++|+|||+|..-++....... ...+.|++-+.- ...++... .++ ++...+. ..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~-----~~~~~~~s~e~~--~~~~~~~~~~~~--~~~~~~~---~~-- 87 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARSFG--WDLAKLV---DE-- 87 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGGGT--CCHHHHH---HT--
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCC--HHHHHHHHHHCC--CCHHHHH---HH--
T ss_conf 996983999994799999999999999999856-----887420126679--999999999849--9848988---71--
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HH-HHHHHC-CCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHC-CC
Q ss_conf 342683502898531378988778189999-99-999850-69988988088888798----889999999997852-99
Q 000702 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQR-VQ-LARALY-QDADIYLLDDPFSAVDA----HTGSELFKEYIMTAL-AN 626 (1343)
Q Consensus 555 l~~d~~~l~~g~~t~ige~g~~LSgGQkqR-i~-LARal~-~~~~illLDep~salD~----~~~~~i~~~~~~~~~-~~ 626 (1343)
..... . ......+.-.......... +. +.+++- .++++++.|...+-.+. .........++.... .+
T Consensus 88 --~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (242)
T d1tf7a1 88 --GKLFI-L--DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG 162 (242)
T ss_dssp --TSEEE-E--ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred --CCHHH-H--HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf --43024-4--421033544443024589999999999886312220020788998760572678999999999998639
Q ss_pred CEEEEEECCCCC
Q ss_conf 589998059996
Q 000702 627 KTVIFVTHQVEF 638 (1343)
Q Consensus 627 ~T~ilvth~~~~ 638 (1343)
.|++++.|....
T Consensus 163 ~~~~~~~~~~~~ 174 (242)
T d1tf7a1 163 ATTVMTTERIEE 174 (242)
T ss_dssp CEEEEEEECSSS
T ss_pred CCEEEEECCCCC
T ss_conf 716884210255
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.31 Score=22.03 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993899888999999965
Q 000702 482 RVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg 502 (1343)
.++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.99 E-value=0.16 Score=24.27 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999959999888999998312
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
-||+++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.91 E-value=0.22 Score=23.13 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCCCEEEECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 026035841980999993899888999999965
Q 000702 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 470 l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg 502 (1343)
++..-+. -.|.-+.++|++|+||||+...+..
T Consensus 5 lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8999999-9999999980899998999999998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.78 E-value=0.2 Score=23.46 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.|||+|+..||||||+++|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.78 E-value=0.16 Score=24.36 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993899888999999965
Q 000702 482 RVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg 502 (1343)
.++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.74 E-value=0.18 Score=23.95 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999998312479
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
.|.++|+.||||||+++.|.+.+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899999999999999999974
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.68 E-value=0.44 Score=20.83 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 9809999938998889999999658657774899879289982666
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA 524 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~ 524 (1343)
.+..++++||+|+||||.+.-|...+.. .| .+++.+.-+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~-~g-----~kV~lit~Dt 48 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKG-KG-----RRPLLVAADT 48 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-TT-----CCEEEEECCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEECCC
T ss_conf 9868999899999889999999999997-79-----9279995443
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.67 E-value=0.12 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++|||...+|||||+++|.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.65 E-value=0.16 Score=24.29 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999938998889999999658657
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
..+.+.||+|+||||++++++.++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.64 E-value=0.16 Score=24.23 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|+.|+|||||++.+.+.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.17 Score=24.07 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999389988899999996
Q 000702 482 RVAVCGMVGSGKSSLLSCIL 501 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~ll 501 (1343)
+++|+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.37 Score=21.39 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.18 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.55 E-value=0.17 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.+||+|...+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=88.41 E-value=0.086 Score=26.39 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999599998889999983124
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.=+|+|+|++++|||||+++|++.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.29 E-value=0.11 Score=25.45 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 7999995999988899999831247986369992730
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNID 1161 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~d 1161 (1343)
.-+.++||||+|||.|+++|.+... .--+.+|+-+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~ 84 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK 84 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCCCC
T ss_conf 6699989999888899999862132--2100034433
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.23 E-value=0.13 Score=24.90 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+.-.++|.|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.23 E-value=0.16 Score=24.39 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999389988899999996586
Q 000702 483 VAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~ 504 (1343)
++++|++||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=88.19 E-value=0.2 Score=23.54 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-HHHH
Q ss_conf 997999995999988899999831247986369992730699996-7885
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGL-HDLR 1171 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l-~~LR 1171 (1343)
.+..+.+||+||+||||.+-=|...+.-..-++.+=..|....+- ++|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~ 54 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 54 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
T ss_conf 97799998999998899999999999977990799981366654026676
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.19 Score=23.79 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.17 E-value=0.19 Score=23.75 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999959999888999998312
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.16 E-value=0.19 Score=23.67 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++|-||+||||||..+.|...+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.17 Score=24.07 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|+.|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.03 E-value=0.19 Score=23.74 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
.|||+|..||||||+++.|-.+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.02 E-value=0.26 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.9
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 41980999993899888999999965865
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+++|+++.|.|++|+|||+|..-++-...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 62885999991799998999999999998
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.93 E-value=0.18 Score=23.94 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|..|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.90 E-value=0.2 Score=23.46 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
.|||.|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.89 E-value=0.26 Score=22.67 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2997999995999988899999831
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
++.=||.+||+.|+|||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.86 E-value=0.24 Score=22.89 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8419809999938998889999999658657
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
..++|.++++.|+-|||||||.+.++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.77 E-value=0.22 Score=23.24 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.0069 Score=35.01 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.8
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 100101684299799999599998889999983124
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1113 vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
..++.++.+.+| ...|+|++||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.75 E-value=0.22 Score=23.16 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.|||.|.+|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.75 E-value=0.19 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.67 E-value=0.17 Score=24.08 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999993899888999999965865777
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKIS 508 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~ 508 (1343)
.+.+.||+|+||||+.++++.++....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.21 Score=23.44 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|+.|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.61 E-value=0.15 Score=24.51 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+|.|.|+.||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.59 E-value=0.28 Score=22.40 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=15.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 198099999389988899999996
Q 000702 478 DRGMRVAVCGMVGSGKSSLLSCIL 501 (1343)
Q Consensus 478 ~~g~~~~ivG~~GsGKStll~~ll 501 (1343)
-.|.-+.|.|++|+||||+...++
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 999999998089999999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=87.58 E-value=0.18 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999389988899999996586
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.56 E-value=0.21 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.53 E-value=0.24 Score=22.98 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999938998889999999658657
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
++++|.|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.21 Score=23.35 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.21 Score=23.34 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 299799999599998889999983124798636999273069999
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG 1166 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~ 1166 (1343)
++-..+.+||+||+||||.+-=|...+.-..-+|.+=..|....+
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g 51 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 51 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 999799998999999899999999999977994799823213666
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.23 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.34 E-value=0.23 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.33 E-value=0.22 Score=23.15 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|+.|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.29 E-value=0.23 Score=23.01 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.25 E-value=0.19 Score=23.69 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 299799999599998889999983124798636999273069999
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG 1166 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~ 1166 (1343)
++...+.+||+||+||||.+-=|...+.-..-+|.+=..|...++
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g 53 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA 53 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 999899998999998899999999999977990699960133420
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.24 E-value=0.3 Score=22.17 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.54 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 099999389988899999996586577
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPKI 507 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~~~ 507 (1343)
..+.+.||.|+||+|+...++..+...
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~~~ 51 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLLCQ 51 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 379888999875999999999821010
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.27 Score=22.56 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29979999959999888999998312479
Q 000702 1122 PGGKKIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1122 ~~GekvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
+.|--|+|.|.-||||||+++.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.47 Score=20.63 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.07 E-value=0.21 Score=23.32 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|+|...+|||||++++.+.-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79997899998999999997789
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.01 E-value=0.55 Score=20.11 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=24.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 809999938998889999999658657774
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIPKISG 509 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~~~~G 509 (1343)
...+.|.||.|+|||++++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.00 E-value=0.24 Score=22.91 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993899888999999965
Q 000702 482 RVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg 502 (1343)
.++++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.98 E-value=0.24 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 99999389988899999996-5865
Q 000702 482 RVAVCGMVGSGKSSLLSCIL-GEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~ll-g~~~ 505 (1343)
.++++|..|+|||||++.+. +...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=0.22 Score=23.22 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999389988899999996586
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
..+.|+|++|||||++++.++-..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~ 74 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTG 74 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 658999079996899999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=86.97 E-value=0.55 Score=20.09 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993899888999999965865
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
-+.+.||.|||||++.+++..++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=86.88 E-value=0.21 Score=23.36 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999959999888999998312479863699927
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
+.|-++|..||||||+.+.|..-+. --.+|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=86.84 E-value=0.24 Score=22.91 Aligned_cols=30 Identities=40% Similarity=0.583 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999959999888999998312479863699927
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
.|.++|..||||||+.+.|...+ |--.+|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.83 E-value=0.27 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.81 E-value=0.3 Score=22.16 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.+..+.|.|+.|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.81 E-value=0.26 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999389988899999996586
Q 000702 483 VAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~ 504 (1343)
++|+|.+.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.81 E-value=0.23 Score=23.00 Aligned_cols=25 Identities=48% Similarity=0.680 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999599998889999983124
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.-+|||.|+=|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.74 E-value=0.2 Score=23.47 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.7
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 41980999993899888999999965865
Q 000702 477 VDRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 477 i~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
++++..+.++||.|+|||++.+++++++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99767699989999888999999999859
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.70 E-value=0.23 Score=23.06 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.68 E-value=0.55 Score=20.07 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993899888999999965
Q 000702 482 RVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg 502 (1343)
.++++|..|+|||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=0.24 Score=22.96 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.1
Q ss_pred CCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 60358419809999938998889999999658657
Q 000702 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 472 ~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
|.=+.+.+|+..+|.|+.|+|||+|+..+......
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 41256457875568679998878999999997751
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.61 E-value=0.18 Score=23.82 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
+|+|-|+.||||||+.+.|..-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.57 E-value=0.29 Score=22.32 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999599998889999983124798636999273069999678852050655776436775443069899899999999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ei~~ 1205 (1343)
+|.|+|+.||||||..+.|..-+ |-..|+- -+-+|..+ -+....+.-.+.+.+.-....+|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---EEEEECC
Q ss_conf 999859934783014887742334998889138899999999834998---7998378
Q 000702 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQAR---ILVLDEA 1260 (1343)
Q Consensus 1206 aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~---ILiLDEa 1260 (1343)
.+... +....... ..-+..+.++ +.-.+.|.-.+.+.+-.... ++++|-+
T Consensus 69 ~~~~~-~~~~~~~~-~~~~~~~~~g---~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAAN-AQKNKFLIDG---FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHC-TTCCEEEEES---CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHH-HCCCCEEECC---CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-41210001-1245111011---030489999986442105543389962476
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.51 E-value=0.29 Score=22.25 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.44 E-value=0.24 Score=22.89 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.44 E-value=0.26 Score=22.61 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.43 E-value=0.37 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.35 E-value=0.28 Score=22.33 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.|||+|.-.+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.25 Score=22.75 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.34 E-value=0.31 Score=22.02 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.++|.||.||||+|..+.|...+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.20 E-value=0.37 Score=21.44 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.14 E-value=0.2 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999888999998312479
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
.+.|.|..||||||+++.|...+..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=86.12 E-value=0.18 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9809999938998889999999658
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~ 503 (1343)
+--.++++|+.|+|||||++.+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.08 E-value=0.13 Score=25.05 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.|||.|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.96 E-value=0.21 Score=23.37 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999389988899999996586
Q 000702 483 VAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~ 504 (1343)
++++|+.||||||+.+.|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=85.92 E-value=0.28 Score=22.43 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599998889999983124
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
..+-+.|+.|+|||++++++.+..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 648876689888359999999873
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.92 E-value=0.19 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 99879983788799989899999999973699379986048310013
Q 000702 1251 QARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID 1297 (1343)
Q Consensus 1251 ~~~ILiLDEaTs~lD~~te~~I~~~l~~~~~~~TvI~IAHRl~ti~~ 1297 (1343)
+.+++++||.- .+.......+...+......+..|.++++.+.+..
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 72288614344-31214789876411247764478861487665657
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.27 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999938998889999999658
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~ 503 (1343)
..++++|..|+|||||++.+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.81 E-value=0.38 Score=21.30 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.78 E-value=0.63 Score=19.65 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 099999389988899999996586577
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPKI 507 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~~~ 507 (1343)
..+.+.||+|+||||+.+++..++...
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 059888899875899999999984685
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.74 E-value=0.29 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|+.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.74 E-value=0.28 Score=22.44 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.68 E-value=0.63 Score=19.61 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=73.4
Q ss_pred CCCCCEE-EECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHH
Q ss_conf 1001016-84299799999599998889999983-124798636999273069999678852050655776436775443
Q 000702 1113 VLHGITC-AFPGGKKIGIVGRTGSGKSTLIQALF-RLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRC 1190 (1343)
Q Consensus 1113 vL~~isf-~I~~GekvgIVGrTGsGKSTL~~~L~-rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~ 1190 (1343)
-|+++-- -+++|+.+-|.|++|+|||+|+.-+. .........+.+... +.+...++....
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~~~~~~--------------- 75 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDIIKNAR--------------- 75 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHHHHHHG---------------
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHH---------------
T ss_conf 79885568996983999994799999999999999999856887420126---679999999999---------------
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHH--CCCCEEEEECCCCCCCH-
Q ss_conf 06989989999999999985993478301488774233499888913-889999999983--49987998378879998-
Q 000702 1191 NLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG-QRQLVSLGRALL--KQARILVLDEATASVDT- 1266 (1343)
Q Consensus 1191 NLdp~~~~sd~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~G-QrQrl~LARAlL--~~~~ILiLDEaTs~lD~- 1266 (1343)
-++ ...++.. . .+-....... ...+.-..++.. ...++.-.+..+ .+++++++|--++-.+.
T Consensus 76 ---~~~-~~~~~~~---~-~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~ 141 (242)
T d1tf7a1 76 ---SFG-WDLAKLV---D-EGKLFILDAS------PDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY 141 (242)
T ss_dssp ---GGT-CCHHHHH---H-TTSEEEEECC------CCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT
T ss_pred ---HCC-CCHHHHH---H-HCCHHHHHHC------CCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf ---849-9848988---7-1430244421------033544443024589999999999886312220020788998760
Q ss_pred ---HHH-HHHHHHHHHH-CCCCEEEEECCCCCCC----------CCCCEEEEEE
Q ss_conf ---989-9999999973-6993799860483100----------1357899995
Q 000702 1267 ---ATD-NLIQKIIRTE-FKDCTVCTIAHRIPTV----------IDSDLVLVLS 1305 (1343)
Q Consensus 1267 ---~te-~~I~~~l~~~-~~~~TvI~IAHRl~ti----------~~~DrIlvl~ 1305 (1343)
... ..+.+.++.. ..++|+++++|..... ..+|.++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 142 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 572678999999999998639716884210255422246762335362999988
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.64 E-value=0.32 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.58 E-value=0.31 Score=22.03 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
+|.++|..||||||+.++|...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=85.58 E-value=0.34 Score=21.70 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.|+|-|+.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.56 E-value=0.4 Score=21.19 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9979999959999888999998312479863
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G 1153 (1343)
+...+-|.|++|+||||+++.+.+.+....+
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8881688898999899999999999754468
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.33 Score=21.87 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.54 E-value=0.32 Score=21.93 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999995999988899999831
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
.=||.+||+.|+|||||++.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.49 E-value=0.31 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----EEEEECCCC
Q ss_conf 9999938998889999999658657774899879----289982666
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG----TAAYVSQSA 524 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g----~i~yv~Q~~ 524 (1343)
-+.++||+|||||-|.+.|+++++.- -+.+++ ..+||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEEECCEEECCH
T ss_conf 47998999988999999999873898--8986255114111110444
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=0.31 Score=22.00 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.41 Score=21.05 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.41 E-value=0.33 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999993899888999999965
Q 000702 481 MRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg 502 (1343)
.+++|+|+.||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.39 E-value=0.29 Score=22.26 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999959999888999998312479863699927
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDN 1159 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG 1159 (1343)
-|-++|++|+|||||+++|.+.+. .+-+.|++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.32 E-value=0.39 Score=21.27 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=25.9
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1001016842997999995999988899999831
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1113 vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
+|.| -+++|+.+-|.|++|+|||||..-+.-
T Consensus 26 ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 26 LLGG---GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp HHTS---SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3179---986996999983899988999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.30 E-value=0.37 Score=21.43 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9979999959999888999998312479
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
.|.-|.|-|.-||||||+++.|...++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.29 E-value=0.54 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99999389988899999996586577748
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGE 510 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~ 510 (1343)
.++++|..|+|||||++-+.....++.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.28 E-value=0.29 Score=22.30 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=25.2
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 302603584198099999389988899999996586
Q 000702 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 469 ~l~~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.|+.++ .|=..++|+|+.++|||+|++.|.|..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=0.21 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.17 E-value=0.37 Score=21.41 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
+++|-|..||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.12 E-value=0.35 Score=21.65 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
.|||+|..||||||..+.|-.
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.11 E-value=0.33 Score=21.79 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993899888999999965
Q 000702 482 RVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg 502 (1343)
.++++|+.|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=0.46 Score=20.70 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.06 E-value=0.37 Score=21.46 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999599998889999983124
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
.+..+.|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.05 E-value=0.34 Score=21.74 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.02 E-value=0.22 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
.+.+.||.|+||||+.+++.+++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3898897998788899999998498
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.02 E-value=0.56 Score=20.03 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9809999938998889999999658657
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
|.=-++|+|.+.+|||||+..|+|....
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 9708999972488699999999704121
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.96 E-value=0.39 Score=21.27 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99799999599998889999983124798636
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~ 1154 (1343)
+|.-|+|-|.-||||||++++|...++. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.90 E-value=0.37 Score=21.40 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=39.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999599998889999983124798636999273069999678852050655776436775443069899899999999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ei~~ 1205 (1343)
+|.|+|+.||||||+.+.|..-+. -..|+.- +-+|....- ..-....+++.++.+...+|+.+..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~----~~~i~~~-------~llr~~~~~----~~~~~~~i~~~~~~g~~~~d~~v~~ 66 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG----IPQISTG-------DMLRAAVKS----GSELGKQAKDIMDAGKLVTDELVIA 66 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC----CCEEEHH-------HHHHHHHHH----TCTTTGGGHHHHHHTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CCEECHH-------HHHHHHHCC----CCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 899987999998999999999869----9555101-------476775503----9858999999997699871163999
Q ss_pred HHHH
Q ss_conf 9998
Q 000702 1206 ALDK 1209 (1343)
Q Consensus 1206 aL~~ 1209 (1343)
.+..
T Consensus 67 ~~~~ 70 (179)
T d1e4va1 67 LVKE 70 (179)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.87 E-value=0.35 Score=21.61 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.69 Score=19.34 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.83 E-value=0.47 Score=20.59 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.77 E-value=0.45 Score=20.79 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8429979999959999888999998312479
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
..+||..|.+.|.=||||||+++.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.75 E-value=0.2 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=0.47 Score=20.65 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.67 E-value=0.7 Score=19.28 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=31.9
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8419809999938998889999999658657774899879289982666
Q 000702 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA 524 (1343)
Q Consensus 476 ~i~~g~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~g~i~yv~Q~~ 524 (1343)
-++.|..+.+.|++||||||+...+........| .+.|+.-+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCC
T ss_conf 8666336999648874889999999998754898------899998976
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.56 E-value=0.24 Score=22.94 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99993899888999999965865
Q 000702 483 VAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~~ 505 (1343)
+.+.||+|+||||++++++.++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.54 E-value=0.4 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=84.54 E-value=0.64 Score=19.60 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=28.0
Q ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 41001016842997999995999988899999831
Q 000702 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1112 ~vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
..+|+-.+.+ .|.-|.|.|+||+||||++..|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.47 E-value=0.4 Score=21.15 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=26.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 7999995999988899999831-----24798636-----99927306
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFR-----LIEPACGR-----IIIDNIDI 1162 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~r-----l~~~~~G~-----I~IdG~di 1162 (1343)
-||.++|..|+|||||++.+.. -+.|+-|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.46 E-value=0.28 Score=22.37 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999993899888999999965865
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
-.-+.+.||.|||||++.+++..+..
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.43 E-value=0.36 Score=21.50 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.41 E-value=0.38 Score=21.35 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999938998889999999658657
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
-+.+.||.|||||++++++..+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 4687669988830899999987488
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.41 E-value=0.46 Score=20.67 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.45 Score=20.80 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.26 E-value=0.43 Score=20.94 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=38.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999599998889999983124798636999273069999678852050655776436775443069899899999999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ei~~ 1205 (1343)
+|.|.|+.||||||+.+.|..-+ |-..|+-- +-+|+.+. .+.+ ..-++++.++-.....++...+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~----g~~~i~~~-------~l~~~~~~--~~~~--~~~~i~~~~~~~~~~~~~~~~~ 66 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL----GIPQISTG-------ELFRRNIE--EGTK--LGVEAKRYLDAGDLVPSDLTNE 66 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----TCCEEEHH-------HHHHHHHH--TTCH--HHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89998899999799999999998----99167257-------88998771--0035--6778999998641114689999
Q ss_pred HHHHC
Q ss_conf 99985
Q 000702 1206 ALDKS 1210 (1343)
Q Consensus 1206 aL~~~ 1210 (1343)
.+...
T Consensus 67 ~l~~~ 71 (181)
T d2cdna1 67 LVDDR 71 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99987
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=0.6 Score=19.79 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
||.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.08 E-value=0.39 Score=21.23 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.98 E-value=0.49 Score=20.49 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599998889999983124
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
||.++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.93 E-value=0.41 Score=21.06 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.48 Score=20.55 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1001016842997999995999988899999831
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1113 vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
+|.+ -+++|..+-|.|++|+|||++..-+..
T Consensus 29 ~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 29 LLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3169---976897999988998878899999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.77 E-value=0.57 Score=19.97 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=27.9
Q ss_pred CCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6035841980999993899888999999965865
Q 000702 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 472 ~i~l~i~~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
|.-+.+-+|+..+|.|+.|+|||+|+.-+..-..
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~ 93 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 93 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1025636788777667999898999999999887
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.64 E-value=0.46 Score=20.72 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=0.59 Score=19.83 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=0.57 Score=19.97 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=0.6 Score=19.79 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.30 E-value=0.6 Score=19.82 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.30 E-value=0.44 Score=20.82 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 100101684299799999599998889999983124
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1113 vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
+|+.++ +|=-.|+|+|+.++|||||++.|++..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.18 E-value=0.45 Score=20.76 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999938998889999999658
Q 000702 482 RVAVCGMVGSGKSSLLSCILGE 503 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~ 503 (1343)
.++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.15 E-value=0.8 Score=18.83 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=38.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCEE
Q ss_conf 84299799999599998889999983124798636-9992730699996788520506
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR-IIIDNIDISTIGLHDLRSRLGI 1176 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~-I~IdG~di~~i~l~~LR~~i~i 1176 (1343)
-+++|..+-|.|++|+|||||..-+.....-..|. ++||.-. .++...+ +++++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~a-~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIYA-RKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHHH-HHHCC
T ss_conf 9667358998057774789999999999870898799986544--5489999-98399
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=83.13 E-value=0.5 Score=20.43 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=25.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 84299799999599998889999983124
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLI 1148 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~rl~ 1148 (1343)
-+++|+.+-|.|++|+|||++..-+.--.
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 86288599999179999899999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.02 E-value=0.52 Score=20.30 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999389988899999996586
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~ 504 (1343)
=.++|+|+.||||||+.+.|.-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.00 E-value=0.47 Score=20.61 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.95 E-value=0.088 Score=26.32 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999888999998312
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRL 1147 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl 1147 (1343)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.92 E-value=0.63 Score=19.63 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999995999988899999831
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
-||.++|.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=82.85 E-value=0.62 Score=19.70 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC
Q ss_conf 979999959999888999998312479863699927306999
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTI 1165 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i 1165 (1343)
...+.+||++|+||||.+-=|...+.-..-++.+=..|....
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~ 51 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 51 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 868999899999889999999999997799279995443464
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=82.85 E-value=0.82 Score=18.74 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=14.8
Q ss_pred ECCCCEEEEECCCCCCHHHHH
Q ss_conf 429979999959999888999
Q 000702 1121 FPGGKKIGIVGRTGSGKSTLI 1141 (1343)
Q Consensus 1121 I~~GekvgIVGrTGsGKSTL~ 1141 (1343)
+++|+.+-|+++||||||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHCCCCEEEECCCCCCHHHHH
T ss_conf 875996799817998855999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.79 E-value=0.51 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999938998889999999658657
Q 000702 481 MRVAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 481 ~~~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
++++|-|..||||||+++.|.-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.77 E-value=0.44 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.++++|..|+|||||++.+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.70 E-value=0.6 Score=19.80 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=25.2
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1001016842997999995999988899999831
Q 000702 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1113 vL~~isf~I~~GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
.+|+-.+. -.|.-|.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999999-9999999980899998999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.69 E-value=0.54 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999389988899999996586
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEI 504 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~ 504 (1343)
.+.+.|+.||||||+.+.|.-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=82.58 E-value=0.36 Score=21.57 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 99799999599998889999983124798636999273069999
Q 000702 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIG 1166 (1343)
Q Consensus 1123 ~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~ 1166 (1343)
....+.+||+||+||||.+-=|...+.-...+|.+=..|...++
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g 54 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPA 54 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 99899998999999899999999999977993699972023551
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.55 E-value=0.51 Score=20.37 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99999389988899999996--58657774
Q 000702 482 RVAVCGMVGSGKSSLLSCIL--GEIPKISG 509 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~ll--g~~~~~~G 509 (1343)
++.++|..|+|||||++-+- -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.47 E-value=0.51 Score=20.37 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999993899888999999965865777489
Q 000702 482 RVAVCGMVGSGKSSLLSCILGEIPKISGEV 511 (1343)
Q Consensus 482 ~~~ivG~~GsGKStll~~llg~~~~~~G~i 511 (1343)
.+.|=|..|+||||+++.|...+....+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~ 37 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTL 37 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 999988866789999999999865699769
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.45 E-value=0.53 Score=20.18 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 842997999995999988899999831
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
-+++|+.+-|.|++||||||+..-++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.36 E-value=0.65 Score=19.49 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.|+|..|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.20 E-value=0.71 Score=19.24 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||+.-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.20 E-value=0.71 Score=19.24 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.06 E-value=0.59 Score=19.84 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 7999995999988899999831247986369992
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRIIID 1158 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~Id 1158 (1343)
..|||.|.-||||||.++.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.98 E-value=0.55 Score=20.10 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.|+|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.92 E-value=0.56 Score=20.00 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=58.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCCEEECCC-CCCCCCCHHHH-CC-CCCCCCH
Q ss_conf 999995999988899999831247--9863699927306999967885205065577-64367754430-69-8998999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE--PACGRIIIDNIDISTIGLHDLRSRLGIIPQD-PNLFEGTIRCN-LD-PLEEHSD 1200 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~--~~~G~I~IdG~di~~i~l~~LR~~i~iIpQd-p~LF~gTIr~N-Ld-p~~~~sd 1200 (1343)
.|||+|+-++|||||+..|+.... ...|++. ++...... .++-.+.+++=... ++-+++. +-| +| |+..---
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~-~~~~~d~~-~eE~~rgiTi~~~~~~~~~~~~-~i~iiDtPGh~df~ 81 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDIDKA-PEERARGITINTAHVEYETAKR-HYSHVDCPGHADYI 81 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHHSCS-HHHHHHTCCCSCEEEEEECSSC-EEEEEECCCSGGGH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHCCCC-HHHHCCCEEEEEEEEEEEECCE-EEEEEECCCCHHHH
T ss_conf 999994789849999999999852304774113-54311345-5775587579843799970881-89998289826549
Q ss_pred HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCC
Q ss_conf 99999999859934783014887742334998889138899999999834998799----83788
Q 000702 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV----LDEAT 1261 (1343)
Q Consensus 1201 ~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILi----LDEaT 1261 (1343)
.+...++..+...=++-+-.. .+..+-++-+.+|+.+ .-|++++ +|-..
T Consensus 82 ~~~~~~~~~aD~avlVvda~~-----------Gv~~qt~~~~~~~~~~-gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQV-GVPYIVVFMNKVDMVD 134 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHHT-TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHCCEEEEEEECCC-----------CCCHHHHHHHHHHHHC-CCCEEEEEEEECCCCC
T ss_conf 999999987899999998999-----------9847899999999985-9993899998536679
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=81.79 E-value=0.89 Score=18.46 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.77 E-value=0.61 Score=19.72 Aligned_cols=76 Identities=24% Similarity=0.283 Sum_probs=49.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 84299799999599998889999983124798636-99927306999967885205065577643677544306989989
Q 000702 1120 AFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR-IIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH 1198 (1343)
Q Consensus 1120 ~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~-I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~ 1198 (1343)
-++.|..+-|.|++|+||||+..-+.....-..|. |.||.-. .++.+.+++ +++=+ +|+-.....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH-HCCCH-----------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--679999998-09988-----------995896699
Q ss_pred CHHHHHHHHHH
Q ss_conf 99999999998
Q 000702 1199 SDREIWEALDK 1209 (1343)
Q Consensus 1199 sd~ei~~aL~~ 1209 (1343)
+.|++.+.++.
T Consensus 122 ~~E~~~~~~~~ 132 (269)
T d1mo6a1 122 TGEQALEIADM 132 (269)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 89999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.69 E-value=0.71 Score=19.22 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
+++|||..-+|||||+++|.+--.
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 789986675443555425426615
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.68 E-value=0.59 Score=19.85 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 10168429979999959999888999998312479
Q 000702 1116 GITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP 1150 (1343)
Q Consensus 1116 ~isf~I~~GekvgIVGrTGsGKSTL~~~L~rl~~~ 1150 (1343)
|.=+.|-.|+|++|+|..|+|||+|+.-+.+-...
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 41256457875568679998878999999997751
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.68 E-value=0.74 Score=19.07 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.58 E-value=0.57 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.53 E-value=0.77 Score=18.95 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++-+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.52 E-value=0.61 Score=19.74 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.51 E-value=0.51 Score=20.35 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCEEEECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6035841980999993899888999999965
Q 000702 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILG 502 (1343)
Q Consensus 472 ~i~l~i~~g~~~~ivG~~GsGKStll~~llg 502 (1343)
|.=+.+-+|+..+|.|+.|+|||+|+..+.-
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 5014546776676006778885799999776
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.42 E-value=0.7 Score=19.28 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999988899999831247
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE 1149 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~ 1149 (1343)
.+-+.|++|+||||+++++.+-+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.39 E-value=0.6 Score=19.79 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.38 E-value=0.62 Score=19.65 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 97999995999988899999831247986369992730699996788520506557764367754430698998999999
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREI 1203 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ei 1203 (1343)
.=+|.|+|+-||||||+.+.|..-| |-..|+-- +-+|+.+. +...+...+.+.++.+....|+.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~----g~~~is~g-------dllr~~~~----~~~~~~~~~~~~~~~~~~v~~~~~ 70 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF----ELKHLSSG-------DLLRDNML----RGTEIGVLAKTFIDQGKLIPDDVM 70 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB----CCEEEEHH-------HHHHHHHH----TTCHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCEEECHH-------HHHHHHHH----HHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 2169998899998799999999997----98687189-------99999987----401566899987636641330344
Q ss_pred HHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999998599347830148877423349988891388999999998349987998378
Q 000702 1204 WEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260 (1343)
Q Consensus 1204 ~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILiLDEa 1260 (1343)
...++.. +... ..-.. +-+ | +-....|.-.+.+ .+....++.||-+
T Consensus 71 ~~l~~~~-----~~~~-~~~~~-ild-G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 71 TRLVLHE-----LKNL-TQYNW-LLD-G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHH-----HHHH-TTSCE-EEE-S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHH-----HHHH-HHCCC-CCC-C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 5445554-----4212-10584-244-5--2100067887631-5753299997244
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.27 E-value=0.63 Score=19.63 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.+||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.16 E-value=0.88 Score=18.49 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 980999993899888999999965865
Q 000702 479 RGMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 479 ~g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
|...+.++||+|+|||.|.+.|...+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 765899977875006999999986336
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.12 E-value=0.57 Score=19.97 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=94.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHC-C-CCC-CCCH
Q ss_conf 999995999988899999831247--9863699927306999967885205065577643677544306-9-899-8999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE--PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL-D-PLE-EHSD 1200 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~--~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NL-d-p~~-~~sd 1200 (1343)
.|||+|..|||||||+.+|+-.-. ...|++. +|..+......+..+.+++-+.-..+--..-+-|+ | |+. ++.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~- 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT- 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS-
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH-
T ss_conf 999995898998999999999648534023365-184698565888751886001123431598389995278602269-
Q ss_pred HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE---EECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999859934783014887742334998889138899999999834998799---837887999898999999999
Q 000702 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILV---LDEATASVDTATDNLIQKIIR 1277 (1343)
Q Consensus 1201 ~ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILi---LDEaTs~lD~~te~~I~~~l~ 1277 (1343)
.+...+|..+...=.+- +.....-.+-++..-.|+.. +-|+|++ ||-+-+..+ .+.+.|+
T Consensus 86 ~e~~~~l~~~D~avlVv-----------da~~Gv~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~~-----~~l~ei~ 148 (276)
T d2bv3a2 86 IEVERSMRVLDGAIVVF-----------DSSQGVEPQSETVWRQAEKY-KVPRIAFANKMDKTGADLW-----LVIRTMQ 148 (276)
T ss_dssp TTHHHHHHHCCEEEEEE-----------ETTTSSCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHEEEEC-----------CCCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCC-----HHHHHHH
T ss_conf 99999999630057732-----------25677446699999999985-9997999864456543121-----2689999
Q ss_pred HHCCC-CEEEEEC----CCCCCCCC--CCEEEEEEC---CEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 73699-3799860----48310013--578999959---879662492577505992799999
Q 000702 1278 TEFKD-CTVCTIA----HRIPTVID--SDLVLVLSD---GRVAEFDTPGRLLEDKSSMFLKLV 1330 (1343)
Q Consensus 1278 ~~~~~-~TvI~IA----HRl~ti~~--~DrIlvl~~---G~ive~g~p~~Ll~~~~~~f~~l~ 1330 (1343)
+.+.. +..+.+- -...-+.| ..+.+..++ +...+..-|+++.+.....-..|+
T Consensus 149 ~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~ 211 (276)
T d2bv3a2 149 ERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLV 211 (276)
T ss_dssp HTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 985997178983345787513885056108998558888654002585677777799999876
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=80.78 E-value=0.43 Score=20.93 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999993899888999999965865
Q 000702 480 GMRVAVCGMVGSGKSSLLSCILGEIP 505 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~llg~~~ 505 (1343)
.=.++++|+.|+|||||++.+.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 47999999999878999999844888
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.57 E-value=0.62 Score=19.66 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=102.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHC-C-CCCCCCHH
Q ss_conf 999995999988899999831247--9863699927306999967885205065577643677544306-9-89989999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIE--PACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNL-D-PLEEHSDR 1201 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~--~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NL-d-p~~~~sd~ 1201 (1343)
.|||+|..|+|||||+.+|+..-. ...|++. +|..+.+...++-.+.+++-+.-..+--...+-|+ | |+..-=-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 999994889809999999999709755306622-2211356269888738768751022223432106880681554335
Q ss_pred HHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999998599347830148877423349988891388999999998349987998---378879998989999999997
Q 000702 1202 EIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL---DEATASVDTATDNLIQKIIRT 1278 (1343)
Q Consensus 1202 ei~~aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL~~~~ILiL---DEaTs~lD~~te~~I~~~l~~ 1278 (1343)
|...+++.+...=.+- +.-.....+-++.+-.|+.. +.|.++++ |.+ + |.. + ..+.+++
T Consensus 83 e~~~al~~~D~avlvv-----------da~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~-~--~~~--~-~l~~~~~ 144 (267)
T d2dy1a2 83 EIRGALEAADAALVAV-----------SAEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG-G--DYY--A-LLEDLRS 144 (267)
T ss_dssp HHHHHHHHCSEEEEEE-----------ETTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC-C--CHH--H-HHHHHHH
T ss_pred HHHHHHCCCCCEEEEE-----------ECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC-C--CCH--H-HHHHHHH
T ss_conf 5654312467338984-----------23577421157887765540-44310133320222-2--101--2-3446888
Q ss_pred HCCCCEEEEEC----CCCCCCCC--CCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 36993799860----48310013--5789999598796624925775059927999999
Q 000702 1279 EFKDCTVCTIA----HRIPTVID--SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVT 1331 (1343)
Q Consensus 1279 ~~~~~TvI~IA----HRl~ti~~--~DrIlvl~~G~ive~g~p~~Ll~~~~~~f~~l~~ 1331 (1343)
.+..+.-+.+- .....+.| ..+.+..++|.-.+..-|.++.+.....-.+|++
T Consensus 145 ~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E 203 (267)
T d2dy1a2 145 TLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLE 203 (267)
T ss_dssp HHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHH
T ss_conf 74658676860025883268762476548996189874540777789999987799999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.48 E-value=0.7 Score=19.27 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=53.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999599998889999983124798636999273069999678852050655776436775443069899899999999
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDISTIGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWE 1205 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~l~~LR~~i~iIpQdp~LF~gTIr~NLdp~~~~sd~ei~~ 1205 (1343)
+|-|.|+-||||||+.+.|.--+ |-..|+.-|+ +|.... .+.-..-.++.-++.+....++.+..
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~~d~-------~~~~~~----~~~~~g~~i~~~~~~~~~~~~~~~~~ 68 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLATGDM-------LRSQIA----KGTQLGLEAKKIMDQGGLVSDDIMVN 68 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHHH-------HHHHHH----TTCHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEECCCC-------CEECCC----CCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99998999999899999999996----9945834420-------000013----67707899999876331332203677
Q ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCC-EEEEECCC
Q ss_conf 99985993478301488774233499888913889999999983---4998-79983788
Q 000702 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALL---KQAR-ILVLDEAT 1261 (1343)
Q Consensus 1206 aL~~~~L~~~i~~lp~gLdt~i~e~G~nLS~GQrQrl~LARAlL---~~~~-ILiLDEaT 1261 (1343)
.+... +...+..-...+-++ +.....|...+-+.+- .+|. ++.||-+.
T Consensus 69 ~~~~~-----l~~~~~~~~g~i~dg---~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~ 120 (180)
T d1akya1 69 MIKDE-----LTNNPACKNGFILDG---FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 120 (180)
T ss_dssp HHHHH-----HHHCGGGGSCEEEES---CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCH
T ss_pred HHHHH-----HHCCCCCCCCEECCC---CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 77888-----861821138773257---42003357787766887099742665302332
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| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.48 E-value=0.71 Score=19.20 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9999959999888999998312479863699927306
Q 000702 1126 KIGIVGRTGSGKSTLIQALFRLIEPACGRIIIDNIDI 1162 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IdG~di 1162 (1343)
.+-+.||.|+||||++++|..-+... .+.++|.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~--~~~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCCC
T ss_conf 48987999973889999998503888--533257442
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| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.27 E-value=0.99 Score=18.09 Aligned_cols=21 Identities=33% Similarity=0.630 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999988899999831
Q 000702 1126 KIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1126 kvgIVGrTGsGKSTL~~~L~r 1146 (1343)
||.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
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| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.27 E-value=0.68 Score=19.36 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred CEEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 809999938998889999999-658657774
Q 000702 480 GMRVAVCGMVGSGKSSLLSCI-LGEIPKISG 509 (1343)
Q Consensus 480 g~~~~ivG~~GsGKStll~~l-lg~~~~~~G 509 (1343)
--.+.++|..|+|||||++-+ .++..|+-|
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 4779999899998899999895098278888
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| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.27 E-value=0.43 Score=20.89 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999938998889999999658657
Q 000702 483 VAVCGMVGSGKSSLLSCILGEIPK 506 (1343)
Q Consensus 483 ~~ivG~~GsGKStll~~llg~~~~ 506 (1343)
+.+.||.|+||||++++++.++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~~ 62 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELLG 62 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 999889998705469999999725
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| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.22 E-value=0.72 Score=19.15 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCCCCCCE----EEECCEEC
Q ss_conf 9799999599998889999983-124798636----99927306
Q 000702 1124 GKKIGIVGRTGSGKSTLIQALF-RLIEPACGR----IIIDNIDI 1162 (1343)
Q Consensus 1124 GekvgIVGrTGsGKSTL~~~L~-rl~~~~~G~----I~IdG~di 1162 (1343)
--||-++|.+|+|||||++-+. +-+.|+-|- +.++++.+
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~ 49 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNF 49 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCEEE
T ss_conf 47799998999988999998950982788886789999776999
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| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.18 E-value=0.72 Score=19.17 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999995999988899999831
Q 000702 1125 KKIGIVGRTGSGKSTLIQALFR 1146 (1343)
Q Consensus 1125 ekvgIVGrTGsGKSTL~~~L~r 1146 (1343)
=||.++|.+|+|||||++.+..
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899598999999970
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