Citrus Sinensis ID: 000707

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340-

MSSSRPPPADSWDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLMRKLKRSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNLENSDDESGSSTNNVPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLCMDSQPFNE

cccccccccccccccccccccccccccccEEcccccEEEEEcccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEcccccccEEEEEEEEEcccccccccHHcccccccccccccccccccEEEEEEccccccEEEEEcccEEEEEEccccccEEEEEEcccccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEccccccccccccEEEcccccccccccccccccccccEEcccccEEEEEEccccEEEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEcccccEEEEccccEEEEccccccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEccccccccccEEcEEEEEEccccEEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEccccEEEEEEccEEEEccccccccccEEccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEEEccEEEEEEcccccccccccccccccccEEEEcccccccccccccEEEEEEccccEEEEEEcccccccccccccHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccc

cccccccccccccccccccccccccccccEEcccccEEEEccccEEEEEccccEEEEEEEcccccccccccccccccEEEEEEccccccccccccccccccEEEEEEccccEEEEEEEcccEEEEEEccccccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEccccccccEEEEccccEEEEEEcccccccccccEEEEEEccccEEEEEEccccccccccccccccccHHEEEEEEccccccEEEEEEccEEEEEEEEEccEEEEEEcccccccHHEEcccccccEEEEEEcccEEEEEEEEcccEEEEEccccccccccccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccEEEEEEEEcccccccccccEEEEEcccccccccccccccccccEEEEEEEEccccEEEEEEEccccEEEEEEEccccEEEEEEccccEEEEEEcccccccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccHHHHHcccccEEEEEccccccccccccccccEEEccccccEEccccccccEEEEcccccccccccccccccEEEEEEccccEEEEEEEcccEEEccccccccccEcccccEEEEEEEcccEEEEEcccccEEEEEEccccEEEcccccccEEEEEEcccccccccccEEEEEEcccEEEEEEccccccHHHHccccccccEEEEEcccEccEccccccEEEEEEcccccEEEEEEEcccccccccccccccHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccHHHccccccHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccc

msssrpppadswdcnfmlpgppsrnnfgsadlspsgllafasgssisildsrslqlistipippptsagsvaslspfvtavKWIPitlrcdllstepgssHLLLAAADRHGRVALLDFRLRSVvlwidpdpnpklgiqdlcwivskpdsFVLAAINGPSVLSLYNttsascmwkydaspeylscirrnpfdarHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAgaaslspasglfplymvkftfsphwrhiifvtfprelVVFDlqyetplfsaalpRGCAKFLDvladpnndlLYCAHLDGKLSIWRRKEGEQVHVMCTMEElipsigtsvpspSILAVLVSQSESTIQNVAKLCldaphspsanvdidspfefsddtlllSKTHLISISDDGKVWNWLLTAEGAGDLQKDaiksgmdaDVIDVALcgtntnsmassADVQALEAGKQlehvngsrnrpsnstssqadmsfkvsLDGQLQILSSTVtmlavpspsltatlarggnypavAVPLVAlgtqsgavdvVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFrvlqkperapirALRASSSGRYLLILFRDAPVEVWamtknpimlrsLALPFtvlewtlptvpwpsqtgpsrqsslsskdhkadttdgvstptiasssdskdassegsqddtSESFAFALANGALgvfevhgrrirdfrpkwpsssfissdGLITAMAYrlphvvmgdrsgnirwwdvttghssqfsthregirrikfspvvpgdrsrgriavlfhdntfsvfdldsqdplansllqpqfpgtlvleldwlptrtdkndplvlciagadssfRLIEVNTEKKIGYTSQSRAIKErfrpmplclpillpTSHALALQMILQlgvkpswfntcsttikkrphlipgtpssqkdlrsymiglppigdtvvPEMLLKVLEpyrkegcildDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLMRKLkrspqkaphlafNSELEDTMLSRItskgkstpgterrdslSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLstspessyFYANALRAVALSSAVSRSLLELAVKVVAANmvrndrslsgtHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNlensddesgsstnnvpdnlpglspenedvRAVGEYFGQYQRKLVHLcmdsqpfne

msssrpppadswDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLehvngsrnrpsnstssqaDMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTasfsvhngtvrglrWLGNSRLVSFSYSqvneksggyiNRLVVTCLRSGINRafrvlqkperapiralrasssgrylLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVpwpsqtgpsrqsslsskdhkadttdgvstptiasssdskdassegSQDDTSESFAFALANGALGVFEVHGRrirdfrpkwpsssfisSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGhssqfsthregirrikfspvvpgdrsRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAgadssfrlievntekkigytsqsraiKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSttikkrphlipgtpssqkDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLMRKLKrspqkaphlafnseLEDTMLSRItskgkstpgterrdslseGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNLensddesgsstnNVPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLCMDSQPFNE

MSSSRPPPADSWDCNFMLPGPPSRNNFGSADLSPSGLLAFAsgssisildsrslqlistipippptsAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERElsagaaslspasglfplYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGavdvvdvsanavtasFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIasssdskdassEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYaarfafaaavfGETSEALFWLQLPRALNHLMRKLKRSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANalravalssavsrsllelavKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVaagglqealaalreaqHPDTAAMFVLACREIYAEIITNLENSDDESGSSTNNVPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLCMDSQPFNE

*************************************LAFA***SISILDSRSLQLISTIPI*******SVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDA*******VDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGT*********************************************LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPW***************************************************FAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLI*********LRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLM*************************************************LMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNL****************************RAVGEYFGQYQRKLVHLCM*******

****************MLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGA******AIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPS***********SKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH********EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL********FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNT*******************KDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALN******************************************RDSLSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNL*********************SPENEDVRAVGEYFGQYQRKLVHLC*D******

*********DSWDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEH****************DMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPW************************************************SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTG*********EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLMRK********PHLAFNSELEDTMLSRI***************LSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNLEN***********VPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLCMDSQPFNE

***************FMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVP********RQSSLS*KDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLMRKLK*****************************TPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNL**************PDNLPGLSPENEDVRAVGEYFGQYQRKLVHLCMDS*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1341	2.2.26 [Sep-21-2011]
Q9BZH6		1224	WD repeat-containing prot	yes	no	0.837	0.917	0.230	2e-58
Q8K1X1		1223	WD repeat-containing prot	yes	no	0.582	0.638	0.225	8e-38

>sp\|Q9BZH6\|WDR11_HUMAN WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1	Back alignment and function desciption

 Score =  228 bits (582), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 300/1300 (23%), Positives = 549/1300 (42%), Gaps = 177/1300 (13%)

Query: 18   LPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPF 77
            L G  + +N  + D    GL+A+   S + ++DS + Q   T+ +     A         
Sbjct: 15   LTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQ---TLQVLEKHKAD-------- 63

Query: 78   VTAVKWIPITLRCDLLSTEPGSSHLL-LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG 136
            V  VKW       ++     GS + L LA+AD +G++ + D         I     P   
Sbjct: 64   VVKVKWARENYHHNI-----GSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKP--- 115

Query: 137  IQDLCWIVSKPDSF-VLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHF 195
            IQD+ W+ ++  S  +L AI+ P+ + L+N  + + +WK   +   LS    +PFD  H 
Sbjct: 116  IQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILS-FSFDPFDPSHL 174

Query: 196  CVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASL---------- 245
             +L  +G++        K      K++ I +  +     +   + GA             
Sbjct: 175  TLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQ 234

Query: 246  -SPASGLFPLY-MVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDV 303
              P++    L   ++  + P  R+ + + +PRE+++ DL+    +   A+ R    FL V
Sbjct: 235  EKPSAEFITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQV 294

Query: 304  LADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSE 363
            +     D L+C H +G +++  R+    +    + EE  P      P   +   L SQ +
Sbjct: 295  IPCFQRDGLFCLHENGCITLRVRRSYNNIFTT-SNEEPDPD-----PVQELTYDLRSQCD 348

Query: 364  S-----TIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418
            +     T++  + +C     + +A              L++S         DG+V  W L
Sbjct: 349  AIRVTKTVRPFSMVCCPVNENAAA--------------LVVS---------DGRVMIWEL 385

Query: 419  TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPS 478
             +       +++  SG+      V+ CG     + +     +L+       + G  + P 
Sbjct: 386  KSAVCNRNSRNS-SSGVSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEH-PR 443

Query: 479  NSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQS 538
             S   +  + F         +L+  ++ L  P  ++            +  PL+A+GT +
Sbjct: 444  GSILREVHLKF---------LLTGLLSGLPAPQFAIRMCPPLTTKNIKMYQPLLAVGTSN 494

Query: 539  GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR 598
            G+V V  +++  +    S+H+  V+G+ W   +  +SF+ S  N   G   N L +  L 
Sbjct: 495  GSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNM-GLVRNELQLVDLP 553

Query: 599  SGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-- 656
            +G + AFR  +  + + I  ++ S   +YL ++FRD P+E+W + +   +LR ++  F  
Sbjct: 554  TGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDV-RTCTLLREMSKNFPT 612

Query: 657  -TVLEWTLPTVPWPSQTGPS-RQSSLSSKDHKA------DTTDGVSTPTIASSSDSKDAS 708
             T LEW+      PS    S R+  L++++  A      DT   +   ++ S     ++ 
Sbjct: 613  ITALEWS------PSHNLKSLRKKQLATREAMARQTVVSDTELSIVESSVISLLQEAESK 666

Query: 709  SEGSQDDTS-ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPH 767
            SE SQ+ ++ E F F   +G +    V G  ++D     P  S     G IT +A++   
Sbjct: 667  SELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSM----GSITCIAWKGDT 722

Query: 768  VVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827
            +V+GD  GN+ +WD+    S    THR  +R+I+F+P     +   ++  +++D    V+
Sbjct: 723  LVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAP----GKGNQKLIAMYNDGA-EVW 777

Query: 828  DLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKI 887
            D   +  + +SL   +     +L++DW  +     D ++L  A  D   R++E++ +   
Sbjct: 778  D-TKEVQMVSSLRSGRNVTFRILDVDWCTS-----DKVIL--ASDDGCIRVLEMSMK--- 826

Query: 888  GYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIP 947
               S    + E+    P+  P LL    +LAL+  L   +   W    S  I    +   
Sbjct: 827  ---SACFRMDEQELTEPVWCPYLLVPRASLALKAFL---LHQPWNGQYSLDISHVDY--- 877

Query: 948  GTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAA 1007
              P +++               ++ E L  +    +K   +LD E   L           
Sbjct: 878  --PENEEI------------KNLLQEQLNSLSNDIKK--LLLDPEFTLL----------Q 911

Query: 1008 RFAFAAAVFGETSEALFWLQLPRALNHLMRKLKRSPQKAPHLAFNSELEDTMLSRITSKG 1067
            R    + ++G+ SE  FW      L H + + K +   AP  A   +             
Sbjct: 912  RCLLVSRLYGDESELHFWTVAAHYL-HSLSQEKSASTTAPKEAAPRD------------K 958

Query: 1068 KSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHE-KLEGEQAIQNRVHELVSVGN 1126
             S P     D L E       F++ +L     ER+   E K       +    +L+ +G 
Sbjct: 959  LSNPLDICYDVLCENAY----FQKFQL-----ERVNLQEVKRSTYDHTRKCTDQLLLLGQ 1009

Query: 1127 LEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHL 1186
             + AV LLL TS ++ ++Y ++L+A  +++  S    +  +K+VA NM+ N +   G  L
Sbjct: 1010 TDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQL 1069

Query: 1187 LCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIW-RALI 1245
            LC + +  +AC  LQ  G W  AA LA   L   + A VL+RW DH+   + N   +AL+
Sbjct: 1070 LCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALL 1129

Query: 1246 LYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIIT 1285
            + ++ G        L   ++ D AA+FV AC +  A  +T
Sbjct: 1130 VLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVT 1169

Homo sapiens (taxid: 9606)

>sp\|Q8K1X1\|WDR11_MOUSE WD repeat-containing protein 11 OS=Mus musculus GN=Wdr11 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1341
255572503		1357	nucleotide binding protein, putative [Ri	0.995	0.983	0.763	0.0
225445547		1317	PREDICTED: WD repeat-containing protein	0.967	0.985	0.736	0.0
449464632		1327	PREDICTED: WD repeat-containing protein	0.972	0.982	0.731	0.0
224144173		1311	predicted protein [Populus trichocarpa]	0.966	0.988	0.741	0.0
297738971		1250	unnamed protein product [Vitis vinifera]	0.920	0.987	0.736	0.0
297815382		1348	transducin family protein [Arabidopsis l	0.982	0.977	0.692	0.0
42565355		1345	transducin/WD40 domain-containing protei	0.982	0.979	0.692	0.0
238479953		1358	transducin/WD40 domain-containing protei	0.982	0.970	0.685	0.0
356546110		1252	PREDICTED: WD repeat-containing protein	0.927	0.993	0.708	0.0
334185708		1376	transducin/WD40 domain-containing protei	0.976	0.952	0.671	0.0

>gi\|255572503\|ref\|XP_002527186.1\| nucleotide binding protein, putative [Ricinus communis] gi\|223533451\|gb\|EEF35199.1\| nucleotide binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2010 bits (5207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1041/1363 (76%), Positives = 1168/1363 (85%), Gaps = 28/1363 (2%)

Query: 1    MSSSRPPPADSWDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTI 60
            MS  R P  DS     MLPGPPSRNNF S DLS SGLLAF SGSSISI+DSRSLQLISTI
Sbjct: 1    MSLPRTPQTDS-TSECMLPGPPSRNNFNSIDLSSSGLLAFPSGSSISIVDSRSLQLISTI 59

Query: 61   PIPPPTSAGSVASLSP-----FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVAL 115
            P+PPP ++ S +S S      F+T+V+W P+ L  DLLSTE  SSHLLLAAADRHGR+AL
Sbjct: 60   PLPPPPNSSSSSSSSSSSLSPFITSVRWTPLPLPRDLLSTESSSSHLLLAAADRHGRIAL 119

Query: 116  LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-----S 170
            LDFRL+SV+LW+D DP+PK G+QDLCWI+S+PDS++LAAI+G S LSLY T +       
Sbjct: 120  LDFRLKSVLLWLDHDPSPKCGVQDLCWILSRPDSYILAAISGTSTLSLYTTATTTTTIPK 179

Query: 171  CMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTE 230
            C +KYDASPE+LSCIRR+PFD+RHFCV+GLKGLLLS++VLG+ E+++V+KEL I+TD +E
Sbjct: 180  CFFKYDASPEFLSCIRRDPFDSRHFCVIGLKGLLLSIKVLGETENDIVIKELSIKTDYSE 239

Query: 231  LLKLERELSAGAASL---SPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP 287
            L +LER+ ++  +     +PAS +FPLY VKF+FSP WRHI+FVTFPREL+VFDLQYET 
Sbjct: 240  LARLERDTTSSNSGGSSPAPASAVFPLYSVKFSFSPQWRHIVFVTFPRELIVFDLQYETA 299

Query: 288  LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGT 347
            LFS ALPRGC+KFLDVL DPNN+LLYC HLDGKLSIWRRK+GEQ+HVMC +EEL+PSIGT
Sbjct: 300  LFSTALPRGCSKFLDVLPDPNNELLYCVHLDGKLSIWRRKDGEQLHVMCAIEELMPSIGT 359

Query: 348  SVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISI 407
            SVPSPS+LAV +SQSES +QNVAKLC D P++P +  D D+PF+F DDTLLLSKTHLISI
Sbjct: 360  SVPSPSVLAVTISQSESILQNVAKLCSDIPNTPLSEKDFDNPFDFFDDTLLLSKTHLISI 419

Query: 408  SDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQ-ALEAGKQ 466
            SDDGK+WNWL T EG GD +KD  +  + +DV +V   G N + +AS+  +    EAGKQ
Sbjct: 420  SDDGKIWNWLFTVEGTGDFKKDVKELDVASDVNEVPRLGANADGIASADGLAPGPEAGKQ 479

Query: 467  LEHVNGSRNRPSNSTSSQADMSFKV-----SLDGQLQILSSTVTMLAVPSPSLTATLARG 521
             ++ +G+++RP     +QA +S+KV     SL GQLQ+LSSTVTMLAVPSPSLTATLARG
Sbjct: 480  QDNASGNKSRPP-LVLNQACISYKVRLVQISLVGQLQLLSSTVTMLAVPSPSLTATLARG 538

Query: 522  GNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581
            GNYPA AV LVALGTQSG VD+VDVSANAV ASFSVHNGTVRGLRWLGNSRLVSFSYSQV
Sbjct: 539  GNYPAAAVSLVALGTQSGTVDIVDVSANAVAASFSVHNGTVRGLRWLGNSRLVSFSYSQV 598

Query: 582  NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641
            NEK+GGYINRLVVTC+RSG+NR FRVLQKPERAPIRALR SSSGRYLLILFRDAPVEVWA
Sbjct: 599  NEKTGGYINRLVVTCVRSGLNRPFRVLQKPERAPIRALRTSSSGRYLLILFRDAPVEVWA 658

Query: 642  MTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASS 701
            MTK+PIMLRSLALPFTVLEWTLPTVP   Q GPSRQ S SSK+ +  T+DG STP    +
Sbjct: 659  MTKSPIMLRSLALPFTVLEWTLPTVPRTVQNGPSRQFSWSSKEQQPVTSDGASTP---KA 715

Query: 702  SDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAM 761
            S S+  SS+ SQDDT+ESFAFAL NGALGVFEVHGRRIRDFRPKWPSSSF+SSDGLITAM
Sbjct: 716  SSSESTSSDASQDDTAESFAFALVNGALGVFEVHGRRIRDFRPKWPSSSFVSSDGLITAM 775

Query: 762  AYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD 821
            AYRLPHVVMGDRSGNIRWWDVTTGHSS F+THREGIRRIKFSPVVPGDRSRGRIAVLF+D
Sbjct: 776  AYRLPHVVMGDRSGNIRWWDVTTGHSSSFNTHREGIRRIKFSPVVPGDRSRGRIAVLFYD 835

Query: 822  NTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881
            NTFSVFDLD+QDPLANSLLQPQFPGTLVLELDWLP RTDKNDPLVLCIAGADSSFRL+EV
Sbjct: 836  NTFSVFDLDTQDPLANSLLQPQFPGTLVLELDWLPVRTDKNDPLVLCIAGADSSFRLVEV 895

Query: 882  NT-EKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIK 940
            N  +KK GY   SRAIKERFRPMP+C PIL PT HALAL+MILQLGV+PSWFNTC TTI 
Sbjct: 896  NVNDKKPGYGLHSRAIKERFRPMPICSPILFPTPHALALRMILQLGVEPSWFNTCGTTID 955

Query: 941  KRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATV 1000
            KR H IPGT     DLRSYMI LP IGD+VVPEMLLKVLEPYRKEGCILDDERARLYAT+
Sbjct: 956  KRLHSIPGTALPAADLRSYMIDLPRIGDSVVPEMLLKVLEPYRKEGCILDDERARLYATI 1015

Query: 1001 VNKGYAARFAFAAAVFGETSEALFWLQLPRALNHLMRKL-KRSPQKAPHLAFNSELEDT- 1058
            V+KGYA RFAFAAAVFGETSEA+FWLQLP+AL HLM KL  +SPQK P  A   +L+DT 
Sbjct: 1016 VHKGYAVRFAFAAAVFGETSEAIFWLQLPQALKHLMNKLVNKSPQKVPISALIPDLDDTA 1075

Query: 1059 MLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRV 1118
            ML+RI SKGKS  G E+RDSL + Q R MAF+QEELWE A ERI WHEKLEGE+AIQNRV
Sbjct: 1076 MLNRIASKGKSVTGPEKRDSLHKCQFRSMAFKQEELWENANERIPWHEKLEGEEAIQNRV 1135

Query: 1119 HELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRND 1178
            HELVSVGNLEAAVSLLLSTSP+SSYFYANALRAVALSSAVSRSL ELAVKVVAANMVR D
Sbjct: 1136 HELVSVGNLEAAVSLLLSTSPDSSYFYANALRAVALSSAVSRSLHELAVKVVAANMVRTD 1195

Query: 1179 RSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEH 1238
            RSLSGTHLLCAVGR+QEACSQLQDAGCWTDAATLAATHL+GSDYARVLQRWA+HV   EH
Sbjct: 1196 RSLSGTHLLCAVGRHQEACSQLQDAGCWTDAATLAATHLRGSDYARVLQRWAEHVLRAEH 1255

Query: 1239 NIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIITNLENSDDESGSST 1298
            NIWRAL+L+VAAG LQEALAALREAQ PDTAAMF+LACREI+ EII+NL NSDDESG+  
Sbjct: 1256 NIWRALVLFVAAGALQEALAALREAQQPDTAAMFILACREIHEEIISNLGNSDDESGTVK 1315

Query: 1299 NNVPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLCMDSQPFNE 1341
            +   D LPGL+PENEDV AVGEYFGQYQRKLVHLCMDSQPF++
Sbjct: 1316 DTQVD-LPGLNPENEDVIAVGEYFGQYQRKLVHLCMDSQPFSD 1357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225445547\|ref\|XP_002282238.1\| PREDICTED: WD repeat-containing protein 11-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449464632\|ref\|XP_004150033.1\| PREDICTED: WD repeat-containing protein 11-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224144173\|ref\|XP_002325208.1\| predicted protein [Populus trichocarpa] gi\|222866642\|gb\|EEF03773.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297738971\|emb\|CBI28216.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297815382\|ref\|XP_002875574.1\| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi\|297321412\|gb\|EFH51833.1\| transducin family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42565355\|ref\|NP_189790.2\| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi\|332644192\|gb\|AEE77713.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|238479953\|ref\|NP_001154659.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi\|332644193\|gb\|AEE77714.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356546110\|ref\|XP_003541474.1\| PREDICTED: WD repeat-containing protein 11-like [Glycine max]	Back alignment and taxonomy information

>gi\|334185708\|ref\|NP_001190004.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi\|332644194\|gb\|AEE77715.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1341
TAIR\|locus:2066231		1249	AT2G26610 "AT2G26610" [Arabido	0.456	0.489	0.611	0.0
MGI\|MGI:1920230		1223	Wdr11 "WD repeat domain 11" [M	0.327	0.358	0.244	4e-47
UNIPROTKB\|A6QLS8		1222	BRWD2 "Uncharacterized protein	0.328	0.360	0.242	6.5e-47
RGD\|1587347		1224	Wdr11 "WD repeat domain 11" [R	0.328	0.359	0.242	1.5e-46
UNIPROTKB\|Q9BZH6		1224	WDR11 "WD repeat-containing pr	0.328	0.359	0.236	6.2e-46
UNIPROTKB\|F1NV89		1235	WDR11 "Uncharacterized protein	0.244	0.265	0.252	5.3e-44
WB\|WBGene00022459		1019	Y110A7A.9 [Caenorhabditis eleg	0.132	0.174	0.287	1.4e-14

TAIR\|locus:2066231 AT2G26610 "AT2G26610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1916 (679.5 bits), Expect = 0., Sum P(3) = 0.
 Identities = 388/634 (61%), Positives = 453/634 (71%)

Query:   655 PFTVLEWTLP-TV-PWPSQTGPS-RQSSLSSKDHKADTTDGVSTPT---IXXXXXXXXXX 708
             P  +    LP TV  W   T PS  Q SLS +   +   +   TP+              
Sbjct:   595 PVMLRSLALPFTVLEWTLPTIPSIAQKSLSKQLSMSSNQEVNVTPSDIETPNASDSKAVA 654

Query:   709 XEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHV 768
              +  QDD SESFAFAL NG+LGVFEV+GRRIRDFRPKWP+SSFIS+DGLITAMAYRLPHV
Sbjct:   655 ADALQDDASESFAFALVNGSLGVFEVYGRRIRDFRPKWPASSFISTDGLITAMAYRLPHV 714

Query:   769 VMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828
             V GD+ GNIRWWDV +G+SS F+T +EGI++IKFSPV  GD SRGRI VLF+DNTFS++D
Sbjct:   715 VTGDKLGNIRWWDVVSGNSSSFNTCKEGIKKIKFSPVFSGDISRGRITVLFYDNTFSIYD 774

Query:   829 LDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIG 888
             LDS DPLA SL++PQ PGTL+LELDWLP RT K D LVLC+AG D SFRL+EV+ ++K+ 
Sbjct:   775 LDSPDPLAISLMRPQIPGTLILELDWLPLRTSKFDSLVLCVAGTDGSFRLVEVHLDEKM- 833

Query:   889 YTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIPG 948
              T+Q    KERFR +PLC P+LLPT HAL       LGVKPSWFNT ST I KRPH IPG
Sbjct:   834 -TTQIPP-KERFRSVPLCTPMLLPTPHAL-------LGVKPSWFNTSSTCIDKRPHSIPG 884

Query:   949 TPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYXXX 1008
               SS KDLRS+MI  PPIGD  V EM LKVLEPYR EGC+LDDE+A+LY+++VNKG    
Sbjct:   885 RTSSSKDLRSFMIDFPPIGDPAVLEMFLKVLEPYRSEGCLLDDEKAKLYSSLVNKGCAAR 944

Query:  1009 XXXXXXXXGETSEALFWLQLPRALNHLMRKLKRSPQKAPHLAFNSELEDTMLSRITSKGK 1068
                     GETSEALFWLQLP A+ H++ K   +  K+    F    E   LS+ +SKG 
Sbjct:   945 FAFAAAIFGETSEALFWLQLPSAMKHVVNK---TASKSAKKQFE---ETATLSKTSSKGP 998

Query:  1069 STPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVGNLE 1128
             S+ G E+  S+SEGQLRLMAFEQ++LW  A ERI WHEKLEGE+AIQNRVHELVSVGNLE
Sbjct:   999 SSTGFEKNGSMSEGQLRLMAFEQKDLWVCANERIPWHEKLEGEEAIQNRVHELVSVGNLE 1058

Query:  1129 AAVSLLLSTSPESSYFYANXXXXXXXXXXXXXXXXXXXXKVVAANMVRNDRSLSGTHLLC 1188
              AVSLLLSTSP+SSYFY N                    KVVAANMVR+DRSLSGTHLLC
Sbjct:  1059 GAVSLLLSTSPDSSYFYPNALRAVALSSTVSKSLVELAVKVVAANMVRSDRSLSGTHLLC 1118

Query:  1189 AVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYV 1248
             +VGRYQEACSQLQDAGCWTD+ATLAATHL GSDYARVLQRWA HV ++EHN+WR +ILYV
Sbjct:  1119 SVGRYQEACSQLQDAGCWTDSATLAATHLNGSDYARVLQRWAGHVVNIEHNLWRGVILYV 1178

Query:  1249 XXXXXXXXXXXXXXXXHPDTAAMFVLACREIYAE 1282
                               +TAA+F++ACRE  A+
Sbjct:  1179 AVGAFEEALAVFRKAERAETAAIFIMACRETLAD 1212

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

MGI\|MGI:1920230 Wdr11 "WD repeat domain 11" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QLS8 BRWD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1587347 Wdr11 "WD repeat domain 11" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BZH6 WDR11 "WD repeat-containing protein 11" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NV89 WDR11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00022459 Y110A7A.9 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016924001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (1324 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1341
KOG1912		1062	consensus WD40 repeat protein [General function pr	100.0
KOG0318		603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271		480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271		480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318		603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272		459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1408		1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272		459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279		315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315		311	consensus G-protein beta subunit-like protein (con	100.0
KOG1063		764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	99.98
KOG1408		1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0295		406	consensus WD40 repeat-containing protein [Function	99.97
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0286		343	consensus G-protein beta subunit [General function	99.97
KOG0279		315	consensus G protein beta subunit-like protein [Sig	99.96
KOG1539		910	consensus WD repeat protein [General function pred	99.96
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0313		423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0645		312	consensus WD40 repeat protein [General function pr	99.96
KOG0315		311	consensus G-protein beta subunit-like protein (con	99.96
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0286		343	consensus G-protein beta subunit [General function	99.96
KOG2106		626	consensus Uncharacterized conserved protein, conta	99.96
KOG1539		910	consensus WD repeat protein [General function pred	99.96
KOG0293		519	consensus WD40 repeat-containing protein [Function	99.96
KOG0296		399	consensus Angio-associated migratory cell protein	99.95
KOG0284		464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0263		707	consensus Transcription initiation factor TFIID, s	99.95
KOG0296		399	consensus Angio-associated migratory cell protein	99.95
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG2048		691	consensus WD40 repeat protein [General function pr	99.95
KOG0265		338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	99.95
PLN00181		793	protein SPA1-RELATED; Provisional	99.95
KOG0282		503	consensus mRNA splicing factor [Function unknown]	99.95
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0295		406	consensus WD40 repeat-containing protein [Function	99.95
KOG2041		1189	consensus WD40 repeat protein [General function pr	99.94
KOG0266		456	consensus WD40 repeat-containing protein [General	99.94
KOG0266		456	consensus WD40 repeat-containing protein [General	99.94
KOG0263		707	consensus Transcription initiation factor TFIID, s	99.94
KOG0292		1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	99.94
KOG1063		764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0282		503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0645		312	consensus WD40 repeat protein [General function pr	99.93
KOG0292		1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0265		338	consensus U5 snRNP-specific protein-like factor an	99.93
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0293		519	consensus WD40 repeat-containing protein [Function	99.93
KOG0284		464	consensus Polyadenylation factor I complex, subuni	99.92
KOG0275		508	consensus Conserved WD40 repeat-containing protein	99.92
KOG2106		626	consensus Uncharacterized conserved protein, conta	99.92
PLN00181		793	protein SPA1-RELATED; Provisional	99.92
KOG0316		307	consensus Conserved WD40 repeat-containing protein	99.91
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0313		423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0316		307	consensus Conserved WD40 repeat-containing protein	99.9
KOG0268		433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG0278		334	consensus Serine/threonine kinase receptor-associa	99.89
KOG2048		691	consensus WD40 repeat protein [General function pr	99.89
PTZ00421		493	coronin; Provisional	99.88
KOG1407		313	consensus WD40 repeat protein [Function unknown]	99.88
KOG0294		362	consensus WD40 repeat-containing protein [Function	99.88
KOG0278		334	consensus Serine/threonine kinase receptor-associa	99.87
PTZ00420		568	coronin; Provisional	99.87
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.87
KOG0300		481	consensus WD40 repeat-containing protein [Function	99.87
KOG0973		942	consensus Histone transcription regulator HIRA, WD	99.87
KOG0288		459	consensus WD40 repeat protein TipD [General functi	99.87
KOG0301		745	consensus Phospholipase A2-activating protein (con	99.86
KOG0647		347	consensus mRNA export protein (contains WD40 repea	99.86
KOG1407		313	consensus WD40 repeat protein [Function unknown]	99.86
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0283		712	consensus WD40 repeat-containing protein [Function	99.86
KOG0275		508	consensus Conserved WD40 repeat-containing protein	99.86
PTZ00421		493	coronin; Provisional	99.86
KOG0283		712	consensus WD40 repeat-containing protein [Function	99.86
PTZ00420		568	coronin; Provisional	99.85
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0288		459	consensus WD40 repeat protein TipD [General functi	99.85
KOG0640		430	consensus mRNA cleavage stimulating factor complex	99.85
KOG0310		487	consensus Conserved WD40 repeat-containing protein	99.85
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.85
KOG0643		327	consensus Translation initiation factor 3, subunit	99.85
KOG0640		430	consensus mRNA cleavage stimulating factor complex	99.85
KOG0264		422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG0973		942	consensus Histone transcription regulator HIRA, WD	99.84
KOG0643		327	consensus Translation initiation factor 3, subunit	99.84
KOG0310		487	consensus Conserved WD40 repeat-containing protein	99.84
KOG0301		745	consensus Phospholipase A2-activating protein (con	99.83
KOG0641		350	consensus WD40 repeat protein [General function pr	99.83
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	99.83
KOG1445		1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG2096		420	consensus WD40 repeat protein [General function pr	99.82
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.82
KOG0289		506	consensus mRNA splicing factor [General function p	99.82
KOG0772		641	consensus Uncharacterized conserved protein, conta	99.81
KOG0772		641	consensus Uncharacterized conserved protein, conta	99.81
KOG1332		299	consensus Vesicle coat complex COPII, subunit SEC1	99.81
KOG1445		1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG0300		481	consensus WD40 repeat-containing protein [Function	99.8
KOG0308		735	consensus Conserved WD40 repeat-containing protein	99.8
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	99.8
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	99.8
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG0289		506	consensus mRNA splicing factor [General function p	99.79
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG0264		422	consensus Nucleosome remodeling factor, subunit CA	99.79
KOG0294		362	consensus WD40 repeat-containing protein [Function	99.79
KOG0646		476	consensus WD40 repeat protein [General function pr	99.78
KOG1332		299	consensus Vesicle coat complex COPII, subunit SEC1	99.78
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	99.77
KOG2055		514	consensus WD40 repeat protein [General function pr	99.77
KOG0268		433	consensus Sof1-like rRNA processing protein (conta	99.77
KOG0321		720	consensus WD40 repeat-containing protein L2DTL [Fu	99.77
KOG0308		735	consensus Conserved WD40 repeat-containing protein	99.76
KOG0647		347	consensus mRNA export protein (contains WD40 repea	99.76
KOG0641		350	consensus WD40 repeat protein [General function pr	99.75
KOG0646		476	consensus WD40 repeat protein [General function pr	99.75
KOG0321		720	consensus WD40 repeat-containing protein L2DTL [Fu	99.75
KOG1963		792	consensus WD40 repeat protein [General function pr	99.74
KOG1273		405	consensus WD40 repeat protein [General function pr	99.74
KOG0267		825	consensus Microtubule severing protein katanin p80	99.74
KOG0302		440	consensus Ribosome Assembly protein [General funct	99.74
KOG4283		397	consensus Transcription-coupled repair protein CSA	99.73
KOG2055		514	consensus WD40 repeat protein [General function pr	99.72
KOG0639		705	consensus Transducin-like enhancer of split protei	99.72
KOG0269		839	consensus WD40 repeat-containing protein [Function	99.71
KOG2096		420	consensus WD40 repeat protein [General function pr	99.71
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	99.69
KOG1034		385	consensus Transcriptional repressor EED/ESC/FIE, r	99.69
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	99.69
COG2319		466	FOG: WD40 repeat [General function prediction only	99.69
KOG0639		705	consensus Transducin-like enhancer of split protei	99.68
KOG1274		933	consensus WD40 repeat protein [General function pr	99.68
KOG0270		463	consensus WD40 repeat-containing protein [Function	99.68
KOG4283		397	consensus Transcription-coupled repair protein CSA	99.68
KOG1034		385	consensus Transcriptional repressor EED/ESC/FIE, r	99.68
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	99.68
COG2319		466	FOG: WD40 repeat [General function prediction only	99.67
KOG0269		839	consensus WD40 repeat-containing protein [Function	99.67
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	99.66
KOG1963		792	consensus WD40 repeat protein [General function pr	99.65
KOG0267		825	consensus Microtubule severing protein katanin p80	99.65
KOG1273		405	consensus WD40 repeat protein [General function pr	99.65
KOG0302		440	consensus Ribosome Assembly protein [General funct	99.64
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	99.63
KOG1274		933	consensus WD40 repeat protein [General function pr	99.62
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	99.61
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	99.61
KOG4328		498	consensus WD40 protein [Function unknown]	99.6
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	99.6
KOG1009		434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG0270		463	consensus WD40 repeat-containing protein [Function	99.57
KOG1188		376	consensus WD40 repeat protein [General function pr	99.57
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	99.55
KOG4328		498	consensus WD40 protein [Function unknown]	99.54
KOG1009		434	consensus Chromatin assembly complex 1 subunit B/C	99.53
KOG0303		472	consensus Actin-binding protein Coronin, contains	99.51
KOG0644		1113	consensus Uncharacterized conserved protein, conta	99.51
KOG1007		370	consensus WD repeat protein TSSC1, WD repeat super	99.49
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	99.48
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	99.47
KOG0642		577	consensus Cell-cycle nuclear protein, contains WD-	99.46
KOG0322		323	consensus G-protein beta subunit-like protein GNB1	99.46
KOG0644		1113	consensus Uncharacterized conserved protein, conta	99.43
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	99.42
KOG0290		364	consensus Conserved WD40 repeat-containing protein	99.4
KOG1188		376	consensus WD40 repeat protein [General function pr	99.4
KOG1007		370	consensus WD repeat protein TSSC1, WD repeat super	99.39
PRK01742		429	tolB translocation protein TolB; Provisional	99.38
KOG4497		447	consensus Uncharacterized conserved protein WDR8,	99.35
PRK11028		330	6-phosphogluconolactonase; Provisional	99.34
KOG0771		398	consensus Prolactin regulatory element-binding pro	99.34
KOG4227		609	consensus WD40 repeat protein [General function pr	99.33
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	99.33
KOG0290		364	consensus Conserved WD40 repeat-containing protein	99.32
PRK11028		330	6-phosphogluconolactonase; Provisional	99.32
KOG0322		323	consensus G-protein beta subunit-like protein GNB1	99.32
KOG1310		758	consensus WD40 repeat protein [General function pr	99.31
KOG0649		325	consensus WD40 repeat protein [General function pr	99.31
KOG1334		559	consensus WD40 repeat protein [General function pr	99.29
KOG0303		472	consensus Actin-binding protein Coronin, contains	99.28
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	99.28
PRK01742		429	tolB translocation protein TolB; Provisional	99.27
KOG1587		555	consensus Cytoplasmic dynein intermediate chain [C	99.26
KOG1587		555	consensus Cytoplasmic dynein intermediate chain [C	99.25
KOG0642		577	consensus Cell-cycle nuclear protein, contains WD-	99.24
KOG4227		609	consensus WD40 repeat protein [General function pr	99.24
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	99.23
KOG2139		445	consensus WD40 repeat protein [General function pr	99.22
PRK03629		429	tolB translocation protein TolB; Provisional	99.22
KOG0771		398	consensus Prolactin regulatory element-binding pro	99.21
KOG1912		1062	consensus WD40 repeat protein [General function pr	99.21
KOG1523		361	consensus Actin-related protein Arp2/3 complex, su	99.19
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.16
PRK05137		435	tolB translocation protein TolB; Provisional	99.13
PRK04922		433	tolB translocation protein TolB; Provisional	99.13
PRK03629		429	tolB translocation protein TolB; Provisional	99.13
KOG1524		737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.12
KOG2110		391	consensus Uncharacterized conserved protein, conta	99.11
KOG1523		361	consensus Actin-related protein Arp2/3 complex, su	99.1
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.1
KOG2394		636	consensus WD40 protein DMR-N9 [General function pr	99.09
PRK02889		427	tolB translocation protein TolB; Provisional	99.08
PRK04922		433	tolB translocation protein TolB; Provisional	99.07
KOG0649		325	consensus WD40 repeat protein [General function pr	99.07
KOG1334		559	consensus WD40 repeat protein [General function pr	99.06
KOG2394		636	consensus WD40 protein DMR-N9 [General function pr	99.06
KOG4497		447	consensus Uncharacterized conserved protein WDR8,	99.05
PRK05137		435	tolB translocation protein TolB; Provisional	99.05
PRK02889		427	tolB translocation protein TolB; Provisional	99.04
KOG2041		1189	consensus WD40 repeat protein [General function pr	99.04
KOG1272		545	consensus WD40-repeat-containing subunit of the 18	99.04
KOG2110		391	consensus Uncharacterized conserved protein, conta	99.03
PF08662		194	eIF2A: Eukaryotic translation initiation factor eI	99.02
KOG1310		758	consensus WD40 repeat protein [General function pr	98.99
KOG2139		445	consensus WD40 repeat protein [General function pr	98.98
KOG0974		967	consensus WD-repeat protein WDR6, WD repeat superf	98.93
PF08662		194	eIF2A: Eukaryotic translation initiation factor eI	98.9
KOG1524		737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.87
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.85
KOG3881		412	consensus Uncharacterized conserved protein [Funct	98.83
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	98.83
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	98.82
KOG1272		545	consensus WD40-repeat-containing subunit of the 18	98.8
COG4946		668	Uncharacterized protein related to the periplasmic	98.79
KOG3881		412	consensus Uncharacterized conserved protein [Funct	98.79
PRK00178		430	tolB translocation protein TolB; Provisional	98.79
KOG2111		346	consensus Uncharacterized conserved protein, conta	98.76
KOG2321		703	consensus WD40 repeat protein [General function pr	98.75
KOG1354		433	consensus Serine/threonine protein phosphatase 2A,	98.75
KOG2321		703	consensus WD40 repeat protein [General function pr	98.73
KOG4547		541	consensus WD40 repeat-containing protein [General	98.71
KOG1354		433	consensus Serine/threonine protein phosphatase 2A,	98.7
PRK04792		448	tolB translocation protein TolB; Provisional	98.67
KOG2111		346	consensus Uncharacterized conserved protein, conta	98.66
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	98.64
PRK01029		428	tolB translocation protein TolB; Provisional	98.62
PRK01029		428	tolB translocation protein TolB; Provisional	98.62
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.62
PRK00178		430	tolB translocation protein TolB; Provisional	98.62
PRK04792		448	tolB translocation protein TolB; Provisional	98.62
KOG4547		541	consensus WD40 repeat-containing protein [General	98.6
KOG0974		967	consensus WD-repeat protein WDR6, WD repeat superf	98.6
KOG2315		566	consensus Predicted translation initiation factor	98.57
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	98.56
KOG2315		566	consensus Predicted translation initiation factor	98.54
PF04762		928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.52
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.51
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.46
COG5354		561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.4
PF04762		928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.39
COG5354		561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.35
KOG0280		339	consensus Uncharacterized conserved protein [Amino	98.34
PF07433		305	DUF1513: Protein of unknown function (DUF1513); In	98.33
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	98.32
COG4946		668	Uncharacterized protein related to the periplasmic	98.3
KOG3914		390	consensus WD repeat protein WDR4 [Function unknown	98.3
KOG2314		698	consensus Translation initiation factor 3, subunit	98.26
KOG0280		339	consensus Uncharacterized conserved protein [Amino	98.23
KOG2314		698	consensus Translation initiation factor 3, subunit	98.21
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	98.17
PRK04043		419	tolB translocation protein TolB; Provisional	98.1
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	98.1
KOG1409		404	consensus Uncharacterized conserved protein, conta	98.08
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.06
KOG0309		1081	consensus Conserved WD40 repeat-containing protein	98.06
PF12931		284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	98.02
KOG1064		2439	consensus RAVE (regulator of V-ATPase assembly) co	98.02
PF15492		282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.0
KOG3914		390	consensus WD repeat protein WDR4 [Function unknown	97.98
KOG0309		1081	consensus Conserved WD40 repeat-containing protein	97.96
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	97.94
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	97.94
PF00400		39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.92
KOG1409		404	consensus Uncharacterized conserved protein, conta	97.91
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	97.89
PRK04043		419	tolB translocation protein TolB; Provisional	97.89
KOG1064		2439	consensus RAVE (regulator of V-ATPase assembly) co	97.88
KOG4190		1034	consensus Uncharacterized conserved protein [Funct	97.87
PF15492		282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.86
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.84
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	97.8
COG5170		460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.73
COG5170		460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.71
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	97.7
PF07433		305	DUF1513: Protein of unknown function (DUF1513); In	97.7
PF00400		39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.66
KOG4190		1034	consensus Uncharacterized conserved protein [Funct	97.65
PF06433		342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.57
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.47
KOG4714		319	consensus Nucleoporin [Nuclear structure]	97.47
PF06433		342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.47
KOG4532		344	consensus WD40-like repeat containing protein [Gen	97.31
KOG4532		344	consensus WD40-like repeat containing protein [Gen	97.31
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	97.25
KOG4714		319	consensus Nucleoporin [Nuclear structure]	97.24
KOG2695		425	consensus WD40 repeat protein [General function pr	97.23
PF12234		631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.22
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.07
KOG2695		425	consensus WD40 repeat protein [General function pr	97.04
KOG3616		1636	consensus Selective LIM binding factor [Transcript	96.99
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	96.92
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	96.87
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.85
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.77
cd00216		488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.69
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.64
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	96.55
cd00216		488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.39
PF11768		545	DUF3312: Protein of unknown function (DUF3312); In	96.35
PF06977		248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.35
PF11768		545	DUF3312: Protein of unknown function (DUF3312); In	96.22
KOG3616		1636	consensus Selective LIM binding factor [Transcript	96.19
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	96.07
KOG1008		783	consensus Uncharacterized conserved protein, conta	96.03
PRK02888		635	nitrous-oxide reductase; Validated	96.02
COG3490		366	Uncharacterized protein conserved in bacteria [Fun	95.89
PF14583		386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.88
KOG0882		558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.82
TIGR03075		527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.79
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	95.75
smart00320		40	WD40 WD40 repeats. Note that these repeats are per	95.57
COG3391		381	Uncharacterized conserved protein [Function unknow	95.37
KOG0882		558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.32
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.29
KOG4640		665	consensus Anaphase-promoting complex (APC), subuni	95.25
PF00930		353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.11
PF04841		410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.11
KOG4649		354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.1
COG0823		425	TolB Periplasmic component of the Tol biopolymer t	95.09
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	95.07
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.05
KOG1008		783	consensus Uncharacterized conserved protein, conta	95.01
PF00780		275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.94
PF14655		415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.86
PF06977		248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.74
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.7
smart00320		40	WD40 WD40 repeats. Note that these repeats are per	94.61
PRK02888		635	nitrous-oxide reductase; Validated	94.53
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.18
PRK13616		591	lipoprotein LpqB; Provisional	94.13
PF00930		353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.0
KOG4640		665	consensus Anaphase-promoting complex (APC), subuni	93.94
PF15390		671	DUF4613: Domain of unknown function (DUF4613)	93.85
COG0823		425	TolB Periplasmic component of the Tol biopolymer t	93.61
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.42
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.27
KOG4649		354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	93.05
PF12657		173	TFIIIC_delta: Transcription factor IIIC subunit de	93.05
TIGR03074		764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.94
PF02897		414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.81
KOG2079		1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.55
COG3386		307	Gluconolactonase [Carbohydrate transport and metab	91.49
PF04841		410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.43
KOG2079		1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.19
KOG3621		726	consensus WD40 repeat-containing protein [General	90.85
PRK13616		591	lipoprotein LpqB; Provisional	90.8
COG3204		316	Uncharacterized protein conserved in bacteria [Fun	90.79
PF02897		414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.66
PF12894		47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	90.53
COG3386		307	Gluconolactonase [Carbohydrate transport and metab	90.07
PF12931		284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	89.99
PF08553		794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.76
PF08553		794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.27
PF12894		47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.04
PF04097		613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	88.74
PF00780		275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	88.43
TIGR03075		527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	87.43
KOG3621		726	consensus WD40 repeat-containing protein [General	87.15
PHA02713		557	hypothetical protein; Provisional	85.9
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	85.46
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	85.28
KOG2444		238	consensus WD40 repeat protein [General function pr	84.73
COG5290		1243	IkappaB kinase complex, IKAP component [Transcript	84.42
KOG2444		238	consensus WD40 repeat protein [General function pr	84.42
PF10647		253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	84.18
PF05694		461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.95
KOG2280		829	consensus Vacuolar assembly/sorting protein VPS16	82.86
PF12234		631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	82.2
PHA02713		557	hypothetical protein; Provisional	82.2
TIGR03074		764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	82.17
PF14870		302	PSII_BNR: Photosynthesis system II assembly factor	81.7
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	80.52
KOG2395		644	consensus Protein involved in vacuole import and d	80.29
PF14781		136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.27
PF08728		717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	80.06

>KOG1912 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=9e-138  Score=1196.97  Aligned_cols=1030  Identities=44%  Similarity=0.646  Sum_probs=847.7

Q ss_pred             CCCccccccccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCC
Q 000707            8 PADSWDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPIT   87 (1341)
Q Consensus         8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~   87 (1341)
                      +.+.|+|  |||||+|+.|.+++||+|+||||||+++.|.|+|.++.|.+++++.|+.           .|+.|+|+|..
T Consensus         1 ~~~~s~~--tlpG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s-----------~V~~VrWap~~   67 (1062)
T KOG1912|consen    1 NFKVSDH--TLPGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQS-----------AVTSVRWAPAP   67 (1062)
T ss_pred             CCccccc--cCCCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhccccCcc-----------ceeEEEeccCC
Confidence            3578999  9999999999999999999999999999999999999999999999997           99999999999


Q ss_pred             CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCc-cEEEEEeCCCeEEEEEC
Q 000707           88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAINGPSVLSLYNT  166 (1341)
Q Consensus        88 ~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~s~d~~i~lWd~  166 (1341)
                      ++++++|  |.....+|||++..|+|+|||+..+..+.++  ..|.+ +|+++||.|..+++ ++|++.++.++|.+||+
T Consensus        68 ~p~~llS--~~~~~lliAsaD~~GrIil~d~~~~s~~~~l--~~~~~-~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt  142 (1062)
T KOG1912|consen   68 SPRDLLS--PSSSQLLIASADISGRIILVDFVLASVINWL--SHSND-SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT  142 (1062)
T ss_pred             CchhccC--ccccceeEEeccccCcEEEEEehhhhhhhhh--cCCCc-chhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence            9999998  3357889999999999999999999999996  44556 99999999999888 89999999999999999


Q ss_pred             CCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc-cccCCC
Q 000707          167 TSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS-AGAASL  245 (1341)
Q Consensus       167 ~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~-~~s~~~  245 (1341)
                      .||+++|++++.++.+.|++|+|||++++++.+.+|++++.++.+..+.+..+|+++|.++..++.++++.-. +.+...
T Consensus       143 dtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts  222 (1062)
T KOG1912|consen  143 DTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS  222 (1062)
T ss_pred             cCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence            9999999999999999999999999999999999999999999998888888999999988777877776421 122222


Q ss_pred             CCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEe
Q 000707          246 SPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR  325 (1341)
Q Consensus       246 ~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~  325 (1341)
                      .|++..++.+|.+++|+|.+|++++..+++++.|+|++..+++.+++++|++.+|++|+++|+++.|||+|.||.+.+|.
T Consensus       223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            45667778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC----------------CceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCC
Q 000707          326 RKE----------------GEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSP  389 (1341)
Q Consensus       326 ~~~----------------g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~  389 (1341)
                      +++                |+|++.+|.+++.||.                                             
T Consensus       303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~---------------------------------------------  337 (1062)
T KOG1912|consen  303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV---------------------------------------------  337 (1062)
T ss_pred             eeccCccccccchhhccccccceEEEeechhcccc---------------------------------------------
Confidence            986                5566666666665553                                             


Q ss_pred             CccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCccccccccccccccc
Q 000707          390 FEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEH  469 (1341)
Q Consensus       390 ~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~  469 (1341)
                       .+.+||.+++  .++..-++|++.+|++.+++...    +...+..+.+.++.|++.+.. ..                
T Consensus       338 -~~~~cPs~~s--a~avl~s~g~~~~w~l~~~ri~~----~~~s~~iel~~pf~f~~~~~~-v~----------------  393 (1062)
T KOG1912|consen  338 -IGASCPSTPS--ALAVLYSSGDSTFWQLSNGRIHL----DYRSSSIELVLPFDFNLSTKL-VG----------------  393 (1062)
T ss_pred             -eeecCCCChh--hhhhhhhcchhHHHhhhcCCcCc----ccccccccccccccccCceee-hh----------------
Confidence             3444555444  77888899999999999876533    345677888999999887521 00                


Q ss_pred             ccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCccc--ccccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000707          470 VNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTA--TLARGGNYPAVAVPLVALGTQSGAVDVVDVS  547 (1341)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~--~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~  547 (1341)
                                        ..++.......+|+++.++..+.|..-.+  .+.-|+|+++...+++|.|++.|+|.|+|+.
T Consensus       394 ------------------k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvs  455 (1062)
T KOG1912|consen  394 ------------------KTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVS  455 (1062)
T ss_pred             ------------------hccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEec
Confidence                              00111111233688888888876521111  1223889999999999999999999999999


Q ss_pred             CCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCE
Q 000707          548 ANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRY  627 (1341)
Q Consensus       548 tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~  627 (1341)
                      ++.+.+.|..|++.|++++|.+..+++|++++.++.++|+++|+++|.|++||..+.||.++++++.||++|++|..|+|
T Consensus       456 t~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~y  535 (1062)
T KOG1912|consen  456 TNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRY  535 (1062)
T ss_pred             chhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCce
Confidence            99999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcEEEEeccCCCceeeecc--Cc-eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCC
Q 000707          628 LLILFRDAPVEVWAMTKNPIMLRSLA--LP-FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDS  704 (1341)
Q Consensus       628 Las~s~D~~I~vWDl~~t~~~l~~l~--~~-v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~  704 (1341)
                      |++.++|.++++||+ ++..+++.+.  .| |+.++|+.+..+...+...+||   +++.                    
T Consensus       536 Lai~Fr~~plEiwd~-kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q---~sms--------------------  591 (1062)
T KOG1912|consen  536 LAILFRREPLEIWDL-KTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ---SSMS--------------------  591 (1062)
T ss_pred             EEEEecccchHHHhh-ccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh---hhhh--------------------
Confidence            999999999999999 8888887665  46 8999999544443322111121   1111                    


Q ss_pred             cCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeeccc---CCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEE
Q 000707          705 KDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFR---PKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWD  781 (1341)
Q Consensus       705 ~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~---~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWD  781 (1341)
                                  .+..+..+.|..++....++....|..   ..+.  +|   ...+..|||++++||.|+.+|++++||
T Consensus       592 ------------~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~e--sf---afal~~mAwk~d~lv~GD~~GNl~~WD  654 (1062)
T KOG1912|consen  592 ------------ENLVVLDSVESRIYHITLSALVVSDGSQVNTAWE--SF---AFALCAMAWKDDILVVGDVEGNLVVWD  654 (1062)
T ss_pred             ------------hceeeeccccchheehhhhhhhhccccchhhHHH--HH---HHHHHhhhccCCeeEeecccCceeEEe
Confidence                        111222222333332222222111110   0010  01   123556999999999999999999999


Q ss_pred             CCCCceee---eccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCC
Q 000707          782 VTTGHSSQ---FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTR  858 (1341)
Q Consensus       782 l~tg~~~~---l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~  858 (1341)
                      +..++.+.   .+.|+.++..+.+-|+.      +.+++...|+ +.+||.+.-.                         
T Consensus       655 lg~R~SRg~~d~p~~ra~~l~~~~ipG~------~~~lvl~~d~-~~lwdtk~~~-------------------------  702 (1062)
T KOG1912|consen  655 LGRRQSRGVRDSPDPRAHSLTFPQIPGD------HTTLVLELDW-LPLWDTKADT-------------------------  702 (1062)
T ss_pred             cccccccCccCCCCchhhheecccCCCC------ceEEEEecCc-ceecccccce-------------------------
Confidence            98776665   67788888888777773      4577777777 7788754321                         


Q ss_pred             CCCCCCeEEEEEECCCcEEEEEccCCceec-ccccccchhcccCCCCcccccccccchHHHHHHHHHhCCCCCccccccC
Q 000707          859 TDKNDPLVLCIAGADSSFRLIEVNTEKKIG-YTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCST  937 (1341)
Q Consensus       859 ~~~g~~~~Las~s~DgtIrvWdv~~~~~~~-~~~~~~~~~~~~~~~pv~~~~~l~~~~~~~lr~~l~~~~~~~~~~~~~~  937 (1341)
                            +++..++.|++.|+.|+...++.. .+++  ..+++|+++|.++|.|+|..|++         ++|+||  +++
T Consensus       703 ------lV~siag~dssfrlldvdlc~~~~~~l~~--d~~~Rf~~m~mks~~ll~~e~~l---------vkPsWf--sst  763 (1062)
T KOG1912|consen  703 ------LVLSIAGMDSSFRLLDVDLCEKSPLVLPN--DNKERFRVMPMKSPPLLPKEHAL---------VKPSWF--SST  763 (1062)
T ss_pred             ------eeeeeccCCcceEEEEEEecccCceecCC--CCceeEEeccccCCccccCcccc---------cccccc--ccc
Confidence                  133446677788888776544422 1111  33778888999999999999977         889999  666


Q ss_pred             CcccCCCCCCCCCCChhhhhhhhccCCCCCCccchHHHHhhcccccccccccchHHHHHHHhhhcchhhHHHHHHHHHcC
Q 000707          938 TIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFG 1017 (1341)
Q Consensus       938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~a~~fg 1017 (1341)
                      -+..+++.++++.++..++|+|++++||.++..++|+.++.+|+||.   ++|++++++|.+.++  .++||+||+++||
T Consensus       764 l~~k~s~~i~~~~l~~~~~r~ysid~s~~d~pe~~em~~~i~e~~~s---l~~Dek~~ll~~~~~--~lqR~~~var~~G  838 (1062)
T KOG1912|consen  764 LYKKRSHNIVGKHLSSKDLRSYSIDRSPADDPEVSEMELKILEPYRS---LLDDEKAKLLEADVS--KLQRFAFVARFFG  838 (1062)
T ss_pred             eeccccccchhhhccCCccccccccCCCCCCcccHHHHHHHHHHHhh---hCcHHHHHHhHHHHH--HHHHHHHHHHHhc
Confidence            77888999999999999999999999999999999999999999998   689999999999875  8999999999999


Q ss_pred             CchHHHHHHhhHHHHHHHHHhcc-CCCCCCCCCCCCchhhhhhhhhhccCCCCCCCCCcCCCcccchhhhcccchHHHHH
Q 000707         1018 ETSEALFWLQLPRALNHLMRKLK-RSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWE 1096 (1341)
Q Consensus      1018 ~~~~~~fw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1096 (1341)
                      |.+|+.||++   +++|++++.. +++++..  ++.        +++.++|.+.|.+        .+++. +|+.++++ 
T Consensus       839 d~sea~fw~~---ai~h~~hslt~~~a~~~e--A~~--------~~~p~~~lsspe~--------r~idv-mc~~~~~~-  895 (1062)
T KOG1912|consen  839 DTSEALFWLI---AIDHFAHSLTEHSAPKLE--AQK--------SKWPSGGLSSPES--------RKIDV-MCAAEQAM-  895 (1062)
T ss_pred             cchHHHHHHH---HHHHHHHHhhhhcccccc--cch--------hcCcCCCCCCcch--------hhhhh-HhhHHHHH-
Confidence            9999999996   8888888888 6665542  222        2344555555543        44555 66655441 


Q ss_pred             HHHHHHHHhhccChHHHHHHHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 000707         1097 TAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVR 1176 (1341)
Q Consensus      1097 ~~~er~~~~e~~~~~e~~~~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~ 1176 (1341)
                                       .+||+++++.+|+.++||++||++.||+++   +++|||+|++++|.++.|+++|+||+|||+
T Consensus       896 -----------------~~k~v~qlv~vG~~~~aV~llL~~saD~~y---~slkA~ll~s~~s~~~~~s~iKlvAtNmia  955 (1062)
T KOG1912|consen  896 -----------------ERKLVEQLVVVGSAKEAVTLLLIVSADLRY---ASLKAALLVSCQSNEKAKSLIKLVATNMIA  955 (1062)
T ss_pred             -----------------HHHHHHHHhhhccHHHHhhhhhhhccCCch---HHHHhhheeeeccCchHHHHHHHHHHhhhc
Confidence                             148999999999999999999999999866   999999999999999999999999999999


Q ss_pred             ccCCcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccH-HHHHHHHHHhCCHHH
Q 000707         1177 NDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNI-WRALILYVAAGGLQE 1255 (1341)
Q Consensus      1177 ~~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~-~~A~~~~~~~g~~~~ 1255 (1341)
                      .|++++||++||++|+..|||+|||++|+|.+|++|||++|+++|  ++..||..||+...+++ -.|.+..++.+|+++
T Consensus       956 ~d~~~~Gv~LLclvg~~~dAC~yLQ~~g~Wt~aa~lAk~~L~~~~--~v~srwi~hl~~~~~~~~~~a~ls~~s~~c~~~ 1033 (1062)
T KOG1912|consen  956 SDLIEDGVELLCLVGAGGDACKYLQSQGLWTKAAVLAKMGLDDPT--EVESRWIGHLADEAKQIRVLAELSRRSWPCVVE 1033 (1062)
T ss_pred             ccccccceeEEEEeccchHHHHHHHhccchhHHHHHHHhcCCChH--HHHHHHHHHhhhHHHhHHHHHHHHHhcccchhh
Confidence            999999999999999999999999999999999999999997776  99999999999999988 688888889999999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhhhcc
Q 000707         1256 ALAALREAQHPDTAAMFVLACREIYAEIITN 1286 (1341)
Q Consensus      1256 a~~~l~~~~~~~~aa~~~~~~~e~~~~~~~~ 1286 (1341)
                      |++  ++++++|++|||++||.+++.+.+++
T Consensus      1034 ~a~--~~~~~~dr~alfv~ac~~~~s~~~Te 1062 (1062)
T KOG1912|consen 1034 AAS--SADAILDRLALFVTACTPPLSSCPTE 1062 (1062)
T ss_pred             hhh--hhhhhhhHHHHHhhhccCccccCCCC
Confidence            999  99999999999999999999988763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1408 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1408 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0286 consensus G-protein beta subunit [General function prediction only]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG0286 consensus G-protein beta subunit [General function prediction only]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Back alignment and domain information

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]	Back alignment and domain information

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]	Back alignment and domain information

>KOG0641 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]	Back alignment and domain information

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0641 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]	Back alignment and domain information

>KOG1963 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]	Back alignment and domain information

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG2319 FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG2319 FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1963 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4328 consensus WD40 protein [Function unknown]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]	Back alignment and domain information

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1188 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG4328 consensus WD40 protein [Function unknown]	Back alignment and domain information

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]	Back alignment and domain information

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG1188 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4227 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]	Back alignment and domain information

>KOG1310 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1334 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]	Back alignment and domain information

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]	Back alignment and domain information

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4227 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2139 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1912 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1334 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]	Back alignment and domain information

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins	Back alignment and domain information

>KOG1310 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2139 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins	Back alignment and domain information

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>PRK01029 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK01029 tolB translocation protein TolB; Provisional	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]	Back alignment and domain information

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []	Back alignment and domain information

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]	Back alignment and domain information

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]	Back alignment and domain information

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	Back alignment and domain information

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]	Back alignment and domain information

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>PRK04043 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C	Back alignment and domain information

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal	Back alignment and domain information

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]	Back alignment and domain information

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide	Back alignment and domain information

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK04043 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide	Back alignment and domain information

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>KOG4714 consensus Nucleoporin [Nuclear structure]	Back alignment and domain information

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4714 consensus Nucleoporin [Nuclear structure]	Back alignment and domain information

>KOG2695 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>KOG2695 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases	Back alignment and domain information

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats	Back alignment and domain information

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []	Back alignment and domain information

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PRK02888 nitrous-oxide reductase; Validated	Back alignment and domain information

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A	Back alignment and domain information

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>smart00320 WD40 WD40 repeats	Back alignment and domain information

>COG3391 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase	Back alignment and domain information

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus	Back alignment and domain information

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []	Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>smart00320 WD40 WD40 repeats	Back alignment and domain information

>PRK02888 nitrous-oxide reductase; Validated	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>PRK13616 lipoprotein LpqB; Provisional	Back alignment and domain information

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF15390 DUF4613: Domain of unknown function (DUF4613)	Back alignment and domain information

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])	Back alignment and domain information

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	Back alignment and domain information

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK13616 lipoprotein LpqB; Provisional	Back alignment and domain information

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain	Back alignment and domain information

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C	Back alignment and domain information

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins	Back alignment and domain information

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins	Back alignment and domain information

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain	Back alignment and domain information

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex	Back alignment and domain information

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase	Back alignment and domain information

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family	Back alignment and domain information

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>KOG2444 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>COG5290 IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>KOG2444 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation	Back alignment and domain information

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea	Back alignment and domain information

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	Back alignment and domain information

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal	Back alignment and domain information

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1341
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
3ei3_B		383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-04
3i2n_A		357	WD repeat-containing protein 92; WD40 repeats, str	4e-04
3lrv_A		343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.3 bits (153), Expect = 5e-10
 Identities = 74/493 (15%), Positives = 146/493 (29%), Gaps = 133/493 (26%)

Query: 724  LANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVM------GDRSGNI 777
            +A      ++V  +   DF+  W +    +S   +  M  +L + +        D S NI
Sbjct: 166  VALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 778  RWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN-----TFSVFDLDSQ 832
            +          +  + +  +RR+  S           + VL   N      ++ F+L  +
Sbjct: 224  K---------LRIHSIQAELRRLLKSKPYE--NC---LLVL--LNVQNAKAWNAFNLSCK 267

Query: 833  -----------DPLANSL-----LQPQFPG-----TLVLELDW-------LPTRTDKNDP 864
                       D L+ +      L              L L +       LP      +P
Sbjct: 268  ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 865  LVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILLPTSH-----ALAL 919
              L I        L   +  K +     +  I+         L +L P  +      L+ 
Sbjct: 328  RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-------SSLNVLEPAEYRKMFDRLS- 379

Query: 920  QMILQLGVK-PS------WFNTCSTTI--------KKRPHLIPGTPSSQKDLRSYMIGLP 964
              +       P+      WF+   + +        K    L+      +K  +   I +P
Sbjct: 380  --VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LV------EKQPKESTISIP 429

Query: 965  PIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFGETSEALF 1024
             I               Y +    L++E A L+ ++V+  Y     F +          +
Sbjct: 430  SI---------------YLELKVKLENEYA-LHRSIVDH-YNIPKTFDSDDLIPPYLDQY 472

Query: 1025 WLQLPRALNHLMRKLKRSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQL 1084
            +       +H+   LK          F     D     +  K +    T    S S    
Sbjct: 473  F------YSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQKIRHD-STAWNASGSILNT 523

Query: 1085 RLMAFEQEELWETAAERITWHEKLEGEQAIQNRVHELVSVG-NLEAA--VSLL-LSTSPE 1140
                 +Q + ++     I  ++  + E+ +   +  L  +  NL  +    LL ++   E
Sbjct: 524  ----LQQLKFYK---PYICDNDP-KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Query: 1141 SSYFYANALRAVA 1153
                +  A + V 
Sbjct: 576  DEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383	Back alignment and structure

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357	Back alignment and structure

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1341
d1jmxb_		346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1pbyb_		337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1mdah_		368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d2bbkh_		355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-04

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346	Back information, alignment and structure


class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 37/330 (11%), Positives = 83/330 (25%), Gaps = 34/330 (10%)

Query: 531 LVALGTQSGAVDVVDVSANAVTASFSVHNGT-VRGLRWLGNSRLVSFSYSQVNEKSGGYI 589
            + +      + VVDV+++ V  S  + +           ++R      +       G I
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----YGDI 64

Query: 590 NRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIML 649
             + +   ++  +     +       + +   S  G+ +                 P  L
Sbjct: 65  YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124

Query: 650 RSLALPFTVLEWTLPTVPWPSQ------TGPSRQSSLSSKDHKADTTDGVSTPTIASSSD 703
              +    +    + T P P Q                   +K D   G  T  +   + 
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 704 SKDA---------------SSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPS 748
           ++                   E S   T   F     + A          +     K  +
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244

Query: 749 SSFISSDGLITAMAYRLPHVVMGDRSGN-IRWWDVTTGHSSQFSTHREGIRRIKFSPVVP 807
             F     L                  N +  +D+      + +        + F     
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK--- 301

Query: 808 GDRSRGRIAVLFHDNTFSVFDLDSQDPLAN 837
                 ++ +    N  +VF+ D+ + + N
Sbjct: 302 -KGD--KLYLGGTFNDLAVFNPDTLEKVKN 328

PyMOL of d1jmxb_

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337	Back information, alignment and structure

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368	Back information, alignment and structure

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1341
d1gxra_		337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1		317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_		388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2		299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1		311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1		311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_		388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1		317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_		337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_		371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2		355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2		342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_		340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2		355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_		371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1		325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2		342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2		299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_		340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua2		287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1		325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2		293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_		393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1sq9a_		393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1qksa2		432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1p22a2		293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1k32a3		360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1yfqa_		342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1hzua2		426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2		287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_		342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1k32a3		360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2		426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1qksa2		432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d2madh_		373	Methylamine dehydrogenase, H-chain {Gram negative	99.91
d1pbyb_		337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_		346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1l0qa2		301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1l0qa2		301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_		337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d2madh_		373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1jmxb_		346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d2bbkh_		355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2bbkh_		355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1ri6a_		333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1ri6a_		333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1mdah_		368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2bgra1		470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.67
d1mdah_		368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2bgra1		470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.53
d1qnia2		441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.3
d1qnia2		441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.16
d2p4oa1		302	Hypothetical protein All0351 homologue {Nostoc pun	98.64
d1q7fa_		279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.37
d2p4oa1		302	Hypothetical protein All0351 homologue {Nostoc pun	98.29
d1xfda1		465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.25
d1jofa_		365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.2
d1jofa_		365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.99
d2dg1a1		319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.96
d1xfda1		465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.95
d2hqsa1		269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.95
d1q7fa_		279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.85
d2hqsa1		269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.6
d2dg1a1		319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.57
d1k32a2		281	Tricorn protease N-terminal domain {Archaeon Therm	97.47
d1pjxa_		314	Diisopropylfluorophosphatase (phosphotriesterase,	97.05
d1pjxa_		314	Diisopropylfluorophosphatase (phosphotriesterase,	96.91
d1rwia_		260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.86
d1k32a2		281	Tricorn protease N-terminal domain {Archaeon Therm	96.79
d2ghsa1		295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.22
d1kv9a2		560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.23
d1kv9a2		560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.91
d1b89a_		336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.84

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-36  Score=251.99  Aligned_cols=276  Identities=15%  Similarity=0.171  Sum_probs=221.3

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-----EEEEEECCCCEEEEEECCCCCE
Q ss_conf             36766299996399721001269987789998999991899299996899908-----8997431787579997399838
Q 000707          499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV-----TASFSVHNGTVRGLRWLGNSRL  573 (1341)
Q Consensus       499 ~~~~~vt~l~~~p~~l~~~~~~g~~~~~~~~~llAsGs~DGtI~iWDl~tg~~-----~~~l~~H~~~V~~i~~s~~~~l  573 (1341)
                      .|..+|++++|+|                ++++||+|+ ||.|+|||+.++..     ......|...|++++|++++++
T Consensus        49 ~H~~~V~~v~fs~----------------~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~  111 (337)
T d1gxra_          49 NHGEVVCAVTISN----------------PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT  111 (337)
T ss_dssp             CCSSCCCEEEECS----------------SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred             CCCCCEEEEEECC----------------CCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCE
T ss_conf             9999289999989----------------999999997-99889977367763311687640488996899998679988


Q ss_pred             E-EEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEC
Q ss_conf             9-984387643467401859999855893003699016999996999987999989999999969999664787113412
Q 000707          574 V-SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL  652 (1341)
Q Consensus       574 i-S~s~~~~~~~~g~~~~~i~iwDl~tg~~~~l~~l~~~~~~~I~~i~~Spdg~~Las~s~D~~i~iWdl~kt~~~l~~l  652 (1341)
                      + +++.          ++.|++||+.....+....+.+ |...+.++.++|++.++++++.|+.+++|++ .++.+.+..
T Consensus       112 l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~-~~~~~~~~~  179 (337)
T d1gxra_         112 LIVGGE----------ASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDL-HNQTLVRQF  179 (337)
T ss_dssp             EEEEES----------SSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEET-TTTEEEEEE
T ss_pred             EEEEEC----------CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
T ss_conf             988612----------3321111111111111111111-1111111111111111111111111111111-111111111


Q ss_pred             C---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf             6---7647999859999999999999666665577877567786666323789986778788668999849999669969
Q 000707          653 A---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL  729 (1341)
Q Consensus       653 ~---~~v~~l~wsp~~~~~~~~~~~~k~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I  729 (1341)
                      .   .++++++|+++                                                    +..+++++.||.+
T Consensus       180 ~~~~~~v~~l~~s~~----------------------------------------------------~~~~~~~~~d~~v  207 (337)
T d1gxra_         180 QGHTDGASCIDISND----------------------------------------------------GTKLWTGGLDNTV  207 (337)
T ss_dssp             CCCSSCEEEEEECTT----------------------------------------------------SSEEEEEETTSEE
T ss_pred             CCCCCCCCCCCCCCC----------------------------------------------------CCCCCCCCCCCCC
T ss_conf             111111110123444----------------------------------------------------3211223566553


Q ss_pred             EEEEECCC-EEECCCCCCCCCCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCEEEECCCCCCEEEEEECCCC
Q ss_conf             99994497-23126678899752345663999965--5999999957994999989999524302577767899991699
Q 000707          730 GVFEVHGR-RIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVV  806 (1341)
Q Consensus       730 ~vwdi~~~-~i~d~~~~~p~~~l~g~~~~v~~ia~--dg~~Lasgs~DG~I~iWDl~t~~~~~l~gH~~~V~~i~fSP~~  806 (1341)
                      ++|+++.. .++..          .+.+.+.+++|  +++++++|+.||.+++||+.++.......|...|.+++|+|+ 
T Consensus       208 ~i~d~~~~~~~~~~----------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~-  276 (337)
T d1gxra_         208 RSWDLREGRQLQQH----------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC-  276 (337)
T ss_dssp             EEEETTTTEEEEEE----------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT-
T ss_pred             CCCCCCCCEEECCC----------CCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-
T ss_conf             21111110000024----------6666157999715303000000256421111111110000124565416999899-


Q ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECC
Q ss_conf             9998778799998899099998898874333334677799847999980899889998599999789929999846
Q 000707          807 PGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN  882 (1341)
Q Consensus       807 ~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~v~w~~~~~~~~~~~~L~sas~DgtirvWdi~  882 (1341)
                       +    .+|++++.|++|++||+.+++.+. .  .+|.  ..|.+++|+|+    ++  +|++++.||+|++||+-
T Consensus       277 -g----~~l~s~s~Dg~i~iwd~~~~~~~~-~--~~~~--~~v~~~~~s~d----~~--~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         277 -G----KWFVSTGKDNLLNAWRTPYGASIF-Q--SKES--SSVLSCDISVD----DK--YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             -S----SEEEEEETTSEEEEEETTTCCEEE-E--EECS--SCEEEEEECTT----SC--EEEEEETTSCEEEEEEE
T ss_pred             -C----CEEEEEECCCEEEEEECCCCCEEE-E--CCCC--CCEEEEEEECC----CC--EEEEEECCCEEEEEEEE
T ss_conf             -9----999999489969999899997999-9--2699--98799999279----99--99999089969999778

PyMOL of d1gxra_

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}	Back information, alignment and structure

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}	Back information, alignment and structure

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}	Back information, alignment and structure

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}	Back information, alignment and structure

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}	Back information, alignment and structure

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}	Back information, alignment and structure

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}	Back information, alignment and structure

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}	Back information, alignment and structure

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}	Back information, alignment and structure

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}	Back information, alignment and structure

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}	Back information, alignment and structure

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}	Back information, alignment and structure

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure