Citrus Sinensis ID: 000713
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1335 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYS2 | 1453 | ABC transporter C family | yes | no | 0.944 | 0.867 | 0.652 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.811 | 0.740 | 0.436 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.796 | 0.702 | 0.428 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.831 | 0.733 | 0.415 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.870 | 0.771 | 0.398 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.826 | 0.752 | 0.403 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.881 | 0.788 | 0.384 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.889 | 0.782 | 0.371 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.870 | 0.755 | 0.372 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.642 | 0.814 | 0.431 | 0.0 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1687 bits (4369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1302 (65%), Positives = 1020/1302 (78%), Gaps = 41/1302 (3%)
Query: 3 DLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILL-LAMLLFNMIQKSS 61
+ W FCG S ++C L ICF I L L + K
Sbjct: 4 NYWTSFCGNHHTS-----------------SNCTVRFLQICFGITLSFLTLCICLFHKEP 46
Query: 62 SKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVLF 121
P R+ +F L+ V+A+ NG +G + L L W+L E K PL WL++L
Sbjct: 47 ------PKRIHQFFCLRLVSALFNGIIGSLDLVLGIWVLRENHSK-----PLILWLVILI 95
Query: 122 QGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALDV 181
QG TWL + LI+ +RG + ++ +RLLS+ SF + + LS+ A+ ++ ++T LDV
Sbjct: 96 QGFTWLFINLIICVRGTRIRKSSLRLLSIFSFFYGLVSSCLSVNNAVFGDELAVRTILDV 155
Query: 182 LSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLN-GEANGLG-KGDSVSQITGFAAAG 239
L PG++LLLL AYK ++ +E+ GE+ LY PLN G++NG K D ++++ FA AG
Sbjct: 156 LLLPGSVLLLLSAYKGYRFDES----GESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAG 211
Query: 240 FFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSS-QP 298
F L+FWWLN L+KRG K L +EDIP+LRK E+AE+CY F + L +QK+ SS QP
Sbjct: 212 LFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP 271
Query: 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLF 358
SIL+ ++C WR++ SGFFA +K++ +SAGPL LNAFILVAE A F+YEG +LA+ LF
Sbjct: 272 SILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLF 331
Query: 359 LAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDA 418
+K++ESLSQRQ YFR R++GL+VRSLLTAAI +KQLRL+N++RL+HSG EIMNY TVDA
Sbjct: 332 FSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDA 391
Query: 419 YRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQ 478
YRIGEFP+WFHQ+WTTS QL IAL ILFH+VG+AT +AL VI +TVLCN P+AKLQ+KFQ
Sbjct: 392 YRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQ 451
Query: 479 TKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGF 538
++LM +QDERLKAC+E+ VNMKVLKLYAWE+HFK IE LRN+E K L AVQ+RKAYN
Sbjct: 452 SELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAV 511
Query: 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAF 598
LFWSSPV VS ATF CYFL++PL ASNVFTFVATLRLVQDP+R+IPDVIGV IQA VAF
Sbjct: 512 LFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAF 571
Query: 599 SRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEES-SSKPTMRNISLEVRPGQ 657
SRI FLEAPELQ R+K E AI IKSASFSWEE S+KP +RN+SLEV+ G+
Sbjct: 572 SRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGE 631
Query: 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPM 717
KVA+CGEVGSGKSTLLAAILGE P GTI YG AYVSQTAWIQTG+IR+NILFG M
Sbjct: 632 KVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVM 691
Query: 718 DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777
D H+Y+ET+++ SL KDLELLP GD TEIGERGVNLSGGQKQRIQLARALYQDADIYLLD
Sbjct: 692 DEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 751
Query: 778 DPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837
DPFSAVDAHTASSLF +YVM+AL+GK VLLVTHQVDFLPAFDSVLLMSDGEI A Y +
Sbjct: 752 DPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQE 811
Query: 838 LLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQ 897
LLA S++FQ+LV+AH+ETAGSER+ V K P KEI + + Q +V K +LIKQ
Sbjct: 812 LLARSRDFQDLVNAHRETAGSERVVAVENPTK---PVKEINR-VISSQSKVLKPSRLIKQ 867
Query: 898 EERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLR 957
EERE GD GL+PYIQY+NQNKG++FF IASL+ +TF +GQILQNSW+AANV+NP VSTL+
Sbjct: 868 EEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMAANVDNPQVSTLK 927
Query: 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILS 1017
LI+VYLLIG S L LM RS+ V++ ++SS SLFSQLLNSLFRAPMSFYDSTPLGRILS
Sbjct: 928 LILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILS 987
Query: 1018 RVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYF 1077
RVSSDLSIVDLD+PF LIF V ++ N +LGVLA+VTWQVLFVS+P+++LA RLQ+YYF
Sbjct: 988 RVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYF 1047
Query: 1078 VTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFA 1137
TAKELMR+NGTT+S VANHLAES+AGA+TIRAF+EE+RFF K+L LIDTNASPFFHSFA
Sbjct: 1048 QTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFA 1107
Query: 1138 ANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 1197
ANEWLIQRLET+SA V++S AFCM+LLP GTF+ GFIGMALSYGLSLN LV S+QNQC
Sbjct: 1108 ANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCY 1167
Query: 1198 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGI 1257
LAN+IISVERLNQY H+ EAPEV+E+ RPP NWPV G+V+I DLQIRYR +SPLVLKGI
Sbjct: 1168 LANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGI 1227
Query: 1258 SCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
SCTFEGGHKIGIVGRTGSGKTTL ALFRL+EP GKI+VDG
Sbjct: 1228 SCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDG 1269
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/1110 (43%), Positives = 716/1110 (64%), Gaps = 26/1110 (2%)
Query: 235 FAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEP 294
A AGFF L+F W+NPL+ G +K L EDIP + ++A+ Y +F + E
Sbjct: 203 LATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDES 262
Query: 295 SSQPS--ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYL 352
S++ + R ++ ++++ FA ++ + + PL L F+ A S G+
Sbjct: 263 STKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLRNGFF 322
Query: 353 LAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMN 412
L + K++ESL+ R YF SR G+++RS L A Y+KQL+LS+ R HS GEI+N
Sbjct: 323 NLACLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVN 382
Query: 413 YVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAK 472
Y+ VDAYR+GEF +WFH W+ S+QL ++ +LF VG L+++ + L N P AK
Sbjct: 383 YIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNLPFAK 442
Query: 473 LQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532
+ QT+ M+AQD+RL++ SE +MKV+KL +WE FK IE R+ E+ WL+ QL
Sbjct: 443 MLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLT 502
Query: 533 KAYNGFLFWSSPVLVSTATFGACYFL-NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVF 591
KA+ FL+W SP +VS+ F C L + PL AS +FT +ATLR++ +P++IIPD I
Sbjct: 503 KAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAI 562
Query: 592 IQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISL 651
IQ NV+F R+ NFL EL+ I + G ++ A+ I+ +F WE + PT+RNI L
Sbjct: 563 IQGNVSFQRLNNFLLDDELKMDEIERSG-LDASGTAVDIQVGNFGWEPETKIPTLRNIHL 621
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENI 711
E++ GQKVA+CG VG+GKS+LL A+LGE+P GT++V+G AYVSQT+WIQ+G+IR+NI
Sbjct: 622 EIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIRDNI 681
Query: 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771
L+G PM+S +Y ++ C+L KD+ +GD TEIG+RG+NLSGGQKQRIQLARA+Y DA
Sbjct: 682 LYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADA 741
Query: 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
D+YLLDDPFSAVDAHTA LF+ V ++L K V+LVTHQV+FL D +L+M +G I +
Sbjct: 742 DVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQ 801
Query: 832 AAPYHQLLASSKEFQELVSAHKET------AGSERLAEVTPSQKSGMPAKEIKKGHVEKQ 885
+ Y +LL FQ+LV+AH + A +E L ++ K +EI+ V ++
Sbjct: 802 SGKYEELLMMGTAFQQLVNAHNDAVTVLPLASNESLGDLRKEGKD----REIRNMTVVEK 857
Query: 886 FEVSK------GDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQIL 939
E G QL ++EE+E+G +G+KP++ Y+ ++G+ + L + FV+ Q
Sbjct: 858 IEEEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAA 917
Query: 940 QNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSL 999
WLA + P ++ LI VY +I +S F+ +R++++ LG+++SK+ FS N++
Sbjct: 918 STYWLAFAIGIPKITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAV 977
Query: 1000 FRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVL 1059
F+APM F+DSTP+GRIL+R SSDL+++D D+PF+ IF V + L ++ VTWQV+
Sbjct: 978 FKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVI 1037
Query: 1060 FVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 1119
+++ + +Q YY +A+EL+R+NGTTK+ V N+ AE+ G +TIRAF +RFF
Sbjct: 1038 IIALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFK 1097
Query: 1120 KNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALS 1179
L+L+D +A FF S AA EW+I R+ETL + + A ++L+P G PG +G++LS
Sbjct: 1098 NYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLS 1157
Query: 1180 YGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDI 1239
Y L+L + V + CTL+N IISVER+ QYM++P E P +++D RPP +WP G + +
Sbjct: 1158 YALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHL 1217
Query: 1240 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+L+IRYRP++PLVLKGISCTF G ++G+VGRTGSGK+TL ALFRL+EPA G IL+DG
Sbjct: 1218 QELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDG 1277
Query: 1300 ----KLAEYDEPMEL--MKREGSLFGQLVK 1323
K+ D M+L + +E +LF ++
Sbjct: 1278 IDISKIGLKDLRMKLSIIPQEPTLFRGCIR 1307
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/1109 (42%), Positives = 675/1109 (60%), Gaps = 46/1109 (4%)
Query: 231 QITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQK 290
++T ++ AG +T WL+PL+ G ++ L +DIP L ++A+S Y + K
Sbjct: 226 KVTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCK 285
Query: 291 QAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEG 350
PS PS+ R I+ W++ + FA + L GP ++ F+ K F +EG
Sbjct: 286 SENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEG 345
Query: 351 YLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEI 410
Y+LA F +K++E+++ RQ Y ++G+ VRS LTA +YRK L+LS+ A+ H+ GEI
Sbjct: 346 YVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEI 405
Query: 411 MNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPL 470
+NY+ VD RIG++ ++ H IW +Q+ +AL IL+ +VG+A +A LV I++L PL
Sbjct: 406 VNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPL 465
Query: 471 AKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQ 530
AK+Q +Q KLM A+DER++ SE NM+VLKL AWE ++ +E +R EY WL
Sbjct: 466 AKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKAL 525
Query: 531 LRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGV 590
+A+ F+FWSSP+ V+ TF FL L A V + +AT R++Q+P+R PD++ +
Sbjct: 526 YSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSM 585
Query: 591 FIQANVAFSRIVNFLEAPELQ-SMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNI 649
Q V+ RI FL+ ELQ + + N+ AI IK F W+ SS+PT+ I
Sbjct: 586 MAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNI--AIEIKDGVFCWDPFSSRPTLSGI 643
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRE 709
++V G +VA+CG VGSGKS+ ++ ILGE+P G +++ G T YVSQ+AWIQ+G+I E
Sbjct: 644 QMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEE 703
Query: 710 NILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769
NILFGSPM+ +Y+ ++ CSL KD+EL +GD T IGERG+NLSGGQKQR+QLARALYQ
Sbjct: 704 NILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQ 763
Query: 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
DADIYLLDDPFSA+DAHT S LF DY++ AL+ K V+ VTHQV+FLPA D +L++ +G I
Sbjct: 764 DADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRI 823
Query: 830 LRAAPYHQLLASSKEFQELVSAHKET-------AGSERLAEVTPSQKSGM---PAKEIKK 879
+++ Y LL + +F+ LVSAH E + S ++ P + S + P ++ +
Sbjct: 824 IQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFE 883
Query: 880 GHVEK-QFEVSKGD---------------------QLIKQEERETGDIGLKPYIQYLNQN 917
+E EV +G QL+++EER G + +K Y+ Y+
Sbjct: 884 NDIETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAA 943
Query: 918 KGFLFFSIASLSHLTFVIGQILQNSWLA-ANV----ENPNVSTLRLIVVYLLIGFVSTLF 972
+ L+ F QI N W+A AN + V L++VY + F S++F
Sbjct: 944 YKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVF 1003
Query: 973 LMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPF 1032
+ R+ G+ +++ LF +L S+FRAPMSF+DSTP GRIL+RVS D S+VDLDIPF
Sbjct: 1004 IFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPF 1063
Query: 1033 SLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKS 1092
L T C + V+ VTWQV + +PV +Q+YY +++EL+R+ KS
Sbjct: 1064 RLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKS 1123
Query: 1093 LVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSAT 1152
+ + ESIAGA TIR F +E RF +NL L+D PFF S AA EWL R+E LS
Sbjct: 1124 PIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTL 1183
Query: 1153 VISSAAFCMVLL---PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLN 1209
V AFCMVLL P GT P G+A++YGL+LN L I + C L N IIS+ER+
Sbjct: 1184 VF---AFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIY 1240
Query: 1210 QYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGI 1269
QY + EAP ++ED RPP +WP G +++ D+++RY + P VL G+SC F GG KIGI
Sbjct: 1241 QYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGI 1300
Query: 1270 VGRTGSGKTTLRGALFRLIEPARGKILVD 1298
VGRTGSGK+TL ALFRLIEP GKI +D
Sbjct: 1301 VGRTGSGKSTLIQALFRLIEPTAGKITID 1329
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/1157 (41%), Positives = 700/1157 (60%), Gaps = 47/1157 (4%)
Query: 179 LDVLSFPGAILLLLCAYKVFKHEETDVKIGENG-LYAPL-NGEANGLGKGDSVS------ 230
D+++F A+ L A V K + ++ NG L PL NG + +G DSV
Sbjct: 186 FDIVAFIAAVFLGYVA--VLKKDRSN----SNGVLEEPLLNGGDSRVGGDDSVELNKTNG 239
Query: 231 --QITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNK 288
+ T ++ AG LTF W++PL+ G +KTL ED+P L + +F L
Sbjct: 240 SGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES 299
Query: 289 QKQAEPSSQPS--ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF 346
E S + +++ + +I ++ FFA I + GP ++ F+ + +
Sbjct: 300 PDGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQY 359
Query: 347 KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHS 406
+EGY+L IT F AKI+E LSQR +FR + +G+++RS L A IY K L LS ++ +
Sbjct: 360 NHEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRT 419
Query: 407 GGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLC 466
GEI+N++TVDA RIG F ++ H W +Q+ +AL IL+ +GLA+IAALV I +L
Sbjct: 420 SGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLI 479
Query: 467 NTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWL 526
N P ++Q +FQ KLM A+D R+K+ SE NM++LKL WE F + I LR E WL
Sbjct: 480 NFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWL 539
Query: 527 SAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPD 586
A F+FW +P LVS +TFGAC L +PL + + + +AT R++Q+PI +PD
Sbjct: 540 KKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPD 599
Query: 587 VIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTM 646
I + +Q V+ R+ ++L LQ +I ++ + + A+ + +++ SW+ SSS PT+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQP-DIVERLPKGSSDVAVEVINSTLSWDVSSSNPTL 658
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS 706
++I+ +V PG KVA+CG VGSGKS+LL+++LGEVP G+++V G AYV+Q+ WIQ+G
Sbjct: 659 KDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGK 718
Query: 707 IRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766
I +NILFG PM+ +Y + LE CSL KDLE+L +GD T IGERG+NLSGGQKQRIQ+ARA
Sbjct: 719 IEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 778
Query: 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826
LYQDADIYL DDPFSAVDAHT S LF + ++ L K V+ VTHQV+FLPA D +L+M D
Sbjct: 779 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKD 838
Query: 827 GEILRAAPYHQLLASSKEFQELVSAHKET-AGSERLAEVTPSQKSG-------------- 871
G I +A Y+ +L S +F EL+ AH+E A + + + S+KS
Sbjct: 839 GRISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAV 898
Query: 872 ---MPAKEIKKGHVEKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASL 928
+ ++++K +E V Q+I++EERE G + L Y +Y+ G L
Sbjct: 899 DEKLESQDLKNDKLES---VEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILL 955
Query: 929 SHLTFVIGQILQNSWLA------ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVV 982
+ F + QI N W+A +V+ P V L++VY+ + F S+L ++ R+ V
Sbjct: 956 GQVLFQLLQIGSNYWMAWATPVSEDVQAP-VKLSTLMIVYVALAFGSSLCILLRATLLVT 1014
Query: 983 LGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATT 1042
G +++ LF ++ + +FR+PMSF+DSTP GRI+SR S+D S VDL++P+
Sbjct: 1015 AGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVI 1074
Query: 1043 NACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESI 1102
+GV++ V+W V V IPV+ +I QRYY A+EL RL G K+ + H +E+I
Sbjct: 1075 QLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETI 1134
Query: 1103 AGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMV 1162
+GA TIR+F +E RF + N+ L D + P F++ A EWL RL+ LS+ + +V
Sbjct: 1135 SGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLV 1194
Query: 1163 LLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVV 1222
+P G P G+A++YGLSLN+ I C L N IISVER+ QY VPSE P V+
Sbjct: 1195 SIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVI 1254
Query: 1223 EDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRG 1282
E NRP +WP G+V+I DLQ+RY P PLVL+GI+CTF+GG + GIVGRTGSGK+TL
Sbjct: 1255 ESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQ 1314
Query: 1283 ALFRLIEPARGKILVDG 1299
LFR++EP+ G+I +DG
Sbjct: 1315 TLFRIVEPSAGEIRIDG 1331
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1209 (39%), Positives = 723/1209 (59%), Gaps = 47/1209 (3%)
Query: 122 QGATWLLVTLIV-SLRGNHLPRAPMRLLS------VLSFLFAGIVCVLSIFAAILSKDVT 174
Q +WL V+++V +R L + P L S +LSF F + F + +
Sbjct: 125 QSFSWLFVSVVVVKIRERRLVKFPWMLRSWWLCSFILSFSFD------AHFITAKHEPLE 178
Query: 175 IKTALDVLSFPGAILLLLCAYKVFKHEETDVKIGEN-GLYAPLN-GEANGLGKGDSVSQI 232
+ D+ ++ LL + + +T + E+ G PL G+ K DS S
Sbjct: 179 FQDYADLTGLLASLFLLAVSIR----GKTGFHLLESSGNTEPLLLGDQTEQNKKDSYSSS 234
Query: 233 TGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQA 292
+ + A F R+TF W+NPL G ++ L +D+PD+ + A C F +L K+
Sbjct: 235 SPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEK 294
Query: 293 EPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFI-LVAESKAGFKYEGY 351
E ++L WR ++ FA++ T GP +N F+ ++E ++ GY
Sbjct: 295 EGPGNAFFYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGY 354
Query: 352 LLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIM 411
LLA+ AKI+E+++QRQ F +R +GL++R+ L + IY+K L LS+ +R H+ GEI+
Sbjct: 355 LLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEII 414
Query: 412 NYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLA 471
NY++VD RI +F ++ + IW +Q+ A+ IL +GL +AALV + + CN PL
Sbjct: 415 NYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLT 474
Query: 472 KLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQL 531
+LQ +Q+ +M A+D+R+KA SE NMK+LKL AW+ F N ++ LR EY L
Sbjct: 475 RLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLR 534
Query: 532 RKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVF 591
+A+ F+ W +P L+S TF C + V L A V + +AT +++Q PI +PD++
Sbjct: 535 LQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSAL 594
Query: 592 IQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISL 651
+Q+ V+ RI ++L+ E Q + + + ++ ++ I++ +FSWE SS+PT+ +I L
Sbjct: 595 VQSKVSADRIASYLQQSETQKDAV-EYCSKDHTELSVEIENGAFSWEPESSRPTLDDIEL 653
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENI 711
+V+ G KVA+CG VGSGKS+LL++ILGE+ +GT++V GK AYV Q+ WI +G+IR+NI
Sbjct: 654 KVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNI 713
Query: 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771
LFGS +S +Y+ T++ C+LIKD EL GD TEIGERG+N+SGGQKQRIQ+ARA+YQ+A
Sbjct: 714 LFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNA 773
Query: 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
DIYLLDDPFSAVDAHT LF D +M L K VL VTHQV+FLPA D +L+M +G +++
Sbjct: 774 DIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQ 833
Query: 832 AAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKG----------- 880
A + +LL + F+ LV AH E L + +KS KE K
Sbjct: 834 AGKFEELLKQNIGFEVLVGAHNEA-----LDSILSIEKSSRNFKEGSKDDTASIAESLQT 888
Query: 881 HVEKQFEVS-----KGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVI 935
H + + +S K +L++ EE E G IG + Y+ YL KG L L+ F +
Sbjct: 889 HCDSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQM 948
Query: 936 GQILQNSWLA----ANVEN-PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 990
QI N W+A E+ P + R+++VY L+ S+L +++R++ + G+ ++++
Sbjct: 949 LQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAET 1008
Query: 991 LFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGV 1050
FS++L S+FRAPMSF+DSTP GRIL+R S+D S++DL++ L + + + V
Sbjct: 1009 FFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFV 1068
Query: 1051 LAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRA 1110
++ V WQV + IPV + QRYY TA+EL R++G ++ + +H AES+AGA TIRA
Sbjct: 1069 MSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRA 1128
Query: 1111 FEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFT 1170
F++ DRF + NL LID+++ P+FH +A EWL RL LS V + + +V LP G
Sbjct: 1129 FDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVIN 1188
Query: 1171 PGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 1230
P G+ ++YGLSLN I N C N +ISVER+ QY +PSEAP V++ +RP N
Sbjct: 1189 PSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDN 1248
Query: 1231 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290
WP VG + DLQ+RY P VLK I+C F GG KIG+VGRTGSGK+TL ALFR++EP
Sbjct: 1249 WPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEP 1308
Query: 1291 ARGKILVDG 1299
++G I++D
Sbjct: 1309 SQGTIVIDN 1317
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/1124 (40%), Positives = 666/1124 (59%), Gaps = 21/1124 (1%)
Query: 186 GAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGFFIRLT 245
G L C +K + E D+ L PL A D+ F+ AG R++
Sbjct: 169 GLFLCCSCLWKKGEGERIDL------LKEPLLSSAES---SDNEEVTAPFSKAGILSRMS 219
Query: 246 FWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTIL 305
F W++PL+ G EK + +D+P L +++ ES ++ F +L + +++ +
Sbjct: 220 FSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRITTFKLIKALF 279
Query: 306 ICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILES 365
+ WRDI +S A + ++ P ++ F+ +K +GY+L T F+AK++E
Sbjct: 280 LSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVEC 339
Query: 366 LSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP 425
+QRQ +FR + GL +RS+L + IY K L L ++ H+ GEI+N + VDA RI F
Sbjct: 340 QTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFS 399
Query: 426 FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQ 485
++ H W +Q+ +AL IL+ ++GL +IAA + +L N P AKL+ KFQ+ LM ++
Sbjct: 400 WFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSK 459
Query: 486 DERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPV 545
D R+K SE +NMK+LKL WE F + I LR++E WL + + W++P
Sbjct: 460 DNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPS 519
Query: 546 LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL 605
+S FGAC L +PL + + +AT R++Q PI +P+ I + +Q V+ +RI +FL
Sbjct: 520 FISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFL 579
Query: 606 EAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEV 665
+LQ ++ + + A+ I + +FSW++SS PT+R+++ +V G VAICG V
Sbjct: 580 CLDDLQQ-DVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTV 638
Query: 666 GSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQET 725
GSGKS+LL++ILGEVP G ++V G+ AY++Q+ WIQ+G + ENILFG PM+ Y
Sbjct: 639 GSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRV 698
Query: 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
LE CSL KDLE+LP+ D T IGERG+NLSGGQKQRIQ+ARALYQDADIYL DDPFSAVDA
Sbjct: 699 LEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 758
Query: 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845
HT S LF + ++ L K V+ VTHQV+FLP D +L+M DG+I +A YH++L S +F
Sbjct: 759 HTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDF 818
Query: 846 QELVSAHKETAGSERLAEVT-PSQKSGMPAKEIKKGHVEKQFEVSKGD---QLIKQEERE 901
ELV AH E + E S+KS + H EKQ S QL+++EERE
Sbjct: 819 MELVGAHTEALATIDSCETGYASEKSTTDKENEVLHHKEKQENGSDNKPSGQLVQEEERE 878
Query: 902 TGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWL------AANVENPNVST 955
G +G Y +Y+ G + + + F + I N W+ + +VE P VS
Sbjct: 879 KGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPP-VSG 937
Query: 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRI 1015
LI+VY+L+ S+ ++ R+L + G + + LF+Q+ +FRA MSF+D+TP+GRI
Sbjct: 938 FTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRI 997
Query: 1016 LSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRY 1075
L+R S+D S+ DL +P + A N +GV+ V WQVL V IPV+ ++Y
Sbjct: 998 LNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQY 1057
Query: 1076 YFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHS 1135
Y A+EL RL G ++S V +H +E+++G TIR+F++E RF + L D + FHS
Sbjct: 1058 YISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHS 1117
Query: 1136 FAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 1195
A EWL RLE LS +S+ +V P G P G+A++Y L+LN+ I
Sbjct: 1118 TGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTL 1177
Query: 1196 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLK 1255
C L N +ISVER+ QY ++PSE P V+E RP +WP G++ IC+LQ+RY P P+VL
Sbjct: 1178 CDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLH 1237
Query: 1256 GISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
G++CTF GG K GIVGRTG GK+TL LFR++EPA G+I +DG
Sbjct: 1238 GLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDG 1281
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1204 (38%), Positives = 698/1204 (57%), Gaps = 27/1204 (2%)
Query: 117 LLVLFQGATWLLVTLIV--SLRGNHLPRAP--MRLLSVLSFLFAGIVCVLSIFAAILSKD 172
L +LF +W ++ + +H + P +R+ VL F+F+ ++ I A+ K
Sbjct: 106 LDLLFTALSWGAISFYIRSQFTYSHDQKFPILLRVWWVLYFMFSCYRLLVDI--ALYKKQ 163
Query: 173 VTIKTAL---DVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANG------L 223
+ L DVL+ ++ L LC Y + + +I LNG + L
Sbjct: 164 ELVSVHLLLSDVLAV--SVGLFLC-YSCLQKQGQGERINLLLEEPLLNGAESSAATSVQL 220
Query: 224 GKGDSVSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFL 283
K + +T F+ AGF ++F W++PL+ G EK + ED+P + +++AE ++ F
Sbjct: 221 DKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFR 280
Query: 284 DQLNKQKQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESK 343
+L + +++ + WRDI +S FA + ++ P ++ F+ +
Sbjct: 281 SKLEWDDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQ 340
Query: 344 AGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARL 403
+ +G +L T F+AK++E ++R YFR + G+ +RS+L + IY K L L ++
Sbjct: 341 RQYSNQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQ 400
Query: 404 MHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITIT 463
H+ GEI+N +TVDA RI F ++ H W +Q+ +AL+IL+ ++GL +IAA +
Sbjct: 401 GHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLV 460
Query: 464 VLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEY 523
+L N PLAKL+ KFQ LM ++D R+K SEA +NM++LKL WE F + I LR +E
Sbjct: 461 MLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEA 520
Query: 524 KWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRI 583
WL A + W++P VS FGAC L +PL + + +AT R++Q PI
Sbjct: 521 GWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYK 580
Query: 584 IPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSK 643
+PD I + +Q V+ RI FL +LQ + + + + + + + +FSW++SS
Sbjct: 581 LPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPS-GSSKMDVEVSNGAFSWDDSSPI 639
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
PT+++I ++ G +AICG VGSGKS+LL++ILGEVP G ++V G+ AY++Q+ WIQ
Sbjct: 640 PTLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQ 699
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
+G + ENILFG PM YQ LE CSL KDLE+ P+ D T IGERG+NLSGGQKQRIQ+
Sbjct: 700 SGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQI 759
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARALYQDADIYL DDPFSAVDAHT S LF + ++ L K V+ VTHQ++FLP D +L+
Sbjct: 760 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILV 819
Query: 824 MSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVE 883
M DG I +A Y+++L S +F ELV AH + + E + +KE K + E
Sbjct: 820 MKDGRITQAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVSNDE 879
Query: 884 KQFEV---SKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQ 940
++ E S QL+++EERE G +G Y +Y+ G I + + F + I
Sbjct: 880 EKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGS 939
Query: 941 NSWLA-----ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 995
N W+A + P VS LI+VY+ + S+ ++ R++ S + G + + LF+Q+
Sbjct: 940 NYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQM 999
Query: 996 LNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVT 1055
+FRA MSF+D+TP+GRIL+R S+D S VDL +P A N +GV+ V
Sbjct: 1000 HFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVA 1059
Query: 1056 WQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 1115
WQVL V IPVI ++YY A+EL RL+G ++S + H +E+++G TIR+F++E
Sbjct: 1060 WQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEP 1119
Query: 1116 RFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 1175
RF + L D + FH+ +A EWL RL+ LS + + +V +P G P F G
Sbjct: 1120 RFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAG 1179
Query: 1176 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 1235
+A++Y L+LNS I C L N +ISVER+ QY+ +PSE V+E RP +WP G
Sbjct: 1180 LAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRG 1239
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ IC+LQ+RY P P+VL+G++CTF GG K GIVGRTG GK+TL LFR++EPA G+I
Sbjct: 1240 EITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEI 1299
Query: 1296 LVDG 1299
+DG
Sbjct: 1300 RIDG 1303
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1261 (37%), Positives = 719/1261 (57%), Gaps = 74/1261 (5%)
Query: 74 FTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTAL-PLNWWLLVLFQGATWLLVTLI 132
F T V +++ C V LC+ + + + ++ + PL W L T L++ ++
Sbjct: 99 FKTTVAVTVLLSFC--SVVLCVLAFTGKRRTQRPWNLIDPLFW----LIHAVTHLVIAVL 152
Query: 133 VSLRG-----NHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALDV---LSF 184
V + NH P + +R+ + SF+ + V IF LS T A DV SF
Sbjct: 153 VLHQKRFAALNH-PLS-LRIYWISSFVLTSLFAVTGIFH-FLSDAATSLRAEDVASFFSF 209
Query: 185 PGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGK-GDSVS-----QITGFAAA 238
P LL+ + + G+ + E N K D+VS ++ +A+A
Sbjct: 210 PLTAFLLIASVR--------------GITGLVTAETNSPTKPSDAVSVEKSDNVSLYASA 255
Query: 239 GFFIRLTFW-WLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ 297
F + TFW W+NPL+ +G + L E +P L +AE F + + K +E SS
Sbjct: 256 SVFSK-TFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLF--ESSWPKPSENSSH 312
Query: 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITL 357
P I T+L C W++I + A++++ + GP+ + +F+ K ++GY L + L
Sbjct: 313 P-IRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLIL 371
Query: 358 FLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVD 417
+AK +E L+ Q F S+ +G+ +RS L A+Y+K L+L+ +AR H G+I+NY+ VD
Sbjct: 372 LVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVD 431
Query: 418 AYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIT---ITVLCNTPLAKLQ 474
A ++ + H IW +Q+ +AL++L+ ++G + I A++ +T + +L T +
Sbjct: 432 AQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFILLGT---QRN 488
Query: 475 HKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKA 534
+ +Q LM +D R+KA +E M+V+K AWE HF I R++E+ WLS A
Sbjct: 489 NGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIA 548
Query: 535 YNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQA 594
N + WS+PVL+S TF L V L A VFT +++Q+PIR P + QA
Sbjct: 549 GNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQA 608
Query: 595 NVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVR 654
++ R+ +++ + EL + + + N A+ ++ SFSW++ ++P + +I+ +V+
Sbjct: 609 MISLGRLDSYMMSKELSEDAVERALGCDG-NTAVEVRDGSFSWDDEDNEPALSDINFKVK 667
Query: 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFG 714
G+ AI G VGSGKS+LLA++LGE+ G ++V G T YV+QT+WI+ G++++NILFG
Sbjct: 668 KGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFG 727
Query: 715 SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774
PM +Y + L CSL KDL+++ +GD TEIGERG+NLSGGQKQRIQLARA+YQ+ D+Y
Sbjct: 728 LPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVY 787
Query: 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834
LLDD FSAVDAHT S +F V AL GK VLLVTHQVDFL D +L+M DG+I+ +
Sbjct: 788 LLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGK 847
Query: 835 YHQLLASSKEFQELVSAHKET-----AGSERLAEVTP-----SQKSGMPAKEIKKGHVE- 883
Y +L++S +F ELV+AH+ + AG++ A T S + P ++ H+
Sbjct: 848 YDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSD 907
Query: 884 ------KQFE----VSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTF 933
K F V G +LIK+EERETG + L Y QY + G+ + LT+
Sbjct: 908 LNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTW 967
Query: 934 VIGQILQNSWLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 990
+ + WLA N + I+ Y++I VS + + RS LG+++++
Sbjct: 968 QGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQI 1027
Query: 991 LFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGV 1050
F Q+LNS+ APMSF+D+TP GRILSR S+D + VD+ IPF L V T S V
Sbjct: 1028 FFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIV 1087
Query: 1051 LAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRA 1110
W F IP+ +L I + YY +++EL R++ TK+ + +H +ESIAG MTIR+
Sbjct: 1088 TCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRS 1147
Query: 1111 FEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFT 1170
F +++ F +N+ ++ N FH+ +NEWL RLE + + V+ +A MVLLP
Sbjct: 1148 FRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIR 1207
Query: 1171 PGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 1230
P +G++LSYGLSLNS L +I C + N ++SVER+ Q+ +PSE+ ++ PP N
Sbjct: 1208 PENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSN 1267
Query: 1231 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290
WP G V + DL++RYRP++PLVLKGI+ +GG K+G+VGRTGSGK+TL LFRL+EP
Sbjct: 1268 WPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEP 1327
Query: 1291 A 1291
+
Sbjct: 1328 S 1328
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/1253 (37%), Positives = 704/1253 (56%), Gaps = 91/1253 (7%)
Query: 107 THTALPLNWWLLVLFQGATWLLV-TLIVSLRGNHLPRAPM--RLLSVLSFLFAGIVCVLS 163
T T L L L L T +++ L++ L+ P P+ R+ V +F+ + V
Sbjct: 122 TRTKLKLVDTLFWLIHAVTNVVIAVLVLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSG 181
Query: 164 IFAAILSKDVTIKT--ALDV---LSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNG 218
I +LS D + A DV +SFP +LLL + K T V + + + AP
Sbjct: 182 ILH-LLSDDPAAASLRADDVASFISFPLTAVLLLVSIK----GSTGVVVTTSNVTAPAKS 236
Query: 219 EANGLGKGDSVSQITGFAAAGFFIRLTFW-WLNPLMKRGREKTLGDEDIPDLRKAEQAES 277
+ K ++VS A+ FI TFW W+NPL+++G + L + +P L +AE
Sbjct: 237 NDVVVEKSENVS----LYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEK 292
Query: 278 CYFQFLDQLNKQKQAEPSSQPSILRTILI-CHWRDIFMSGFFALIKVLTLSAGPLFLNAF 336
F + K + E S P +RT LI C W++I + A+I++ + GP+ + +F
Sbjct: 293 LATLFESKWPKPQ--ENSRNP--VRTTLIRCFWKEIAFTAVLAIIRLSVIYVGPVLIQSF 348
Query: 337 ILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLR 396
+ K +GY L + L +AK +E LS Q F S+ +G+ +RS L A+Y+K L+
Sbjct: 349 VDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLK 408
Query: 397 LSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVG---LAT 453
L+ +AR H G+I+NY+ VDA ++ + H IW +Q+ A+++L++ +G + T
Sbjct: 409 LTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTT 468
Query: 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKN 513
+ L I + +L T K +++Q LM+ +D R+KA +E M+V+K AWE HF
Sbjct: 469 VIGLTGIFVFILLGT---KRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNE 525
Query: 514 AIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVAT 573
I R +E+ WLS A N + WS+PVL+S TF FL V L A VFT
Sbjct: 526 RILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTI 585
Query: 574 LRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSA 633
+++Q+PIR P + QA ++ R+ ++ + EL + + + N A+ IK
Sbjct: 586 FKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGCDG-NVAVEIKDG 644
Query: 634 SFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT 693
SFSW++ +P + NI+ EV+ G+ AI G VGSGKS+LLA++LGE+ G ++V G T
Sbjct: 645 SFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTT 704
Query: 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753
AYV+QT+WIQ G++++NILFG PM+ +Y E L+ C L KD++++ +GD TEIGERG+NL
Sbjct: 705 AYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINL 764
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD 813
SGGQKQRIQLARA+YQ++D+YLLDD FSAVDAHT S +F V AL GK +LLVTHQVD
Sbjct: 765 SGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVD 824
Query: 814 FLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKET-----AGSERLAEVTPSQ 868
FL D +L+M DG I+++ Y +L++S +F ELV+AH+ + AGS
Sbjct: 825 FLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATAANVPM 884
Query: 869 KSGMPAKEIK----------KGHVEKQFEVSK---------------------------- 890
S + + I K H E +
Sbjct: 885 ASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSFLGSNI 944
Query: 891 ---GDQLIKQEERETGDIGLKPYIQYLNQNKGF------LFFSIASLSHLTFVIGQILQN 941
G +LIK+EERE G + + Y Y + G+ +FFS+A + L + +
Sbjct: 945 PEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVFFSVAWQASL------MASD 998
Query: 942 SWLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNS 998
WLA N + I VY++I VS + + R+ LG+++++ F Q+LNS
Sbjct: 999 YWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNS 1058
Query: 999 LFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQV 1058
L APMSF+D+TP GRILSR S+D + VD+ IPF + T S V W
Sbjct: 1059 LVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPT 1118
Query: 1059 LFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 1118
+F IP+ +L I + YY +++EL RL+ TK+ V +H +ESIAG MTIRAF+++ F
Sbjct: 1119 VFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFR 1178
Query: 1119 AKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMAL 1178
+N+ ++ N FH+ +NEWL RLE + + V+ +A MV+LP P +G++L
Sbjct: 1179 QENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSL 1238
Query: 1179 SYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVD 1238
SYGLSLN L +I C + N ++SVER+ Q+ +P+EA ++++RPPPNWP G +
Sbjct: 1239 SYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIR 1298
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPA 1291
+ D+++RYRP++PLVLKG++ +GG KIG+VGRTGSGK+TL LFRL+EP+
Sbjct: 1299 LEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPS 1351
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/890 (43%), Positives = 558/890 (62%), Gaps = 32/890 (3%)
Query: 414 VTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKL 473
++VD RI +F ++ + IW +Q+ A+ IL +GL +AALV + + CN PL +L
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 474 QHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533
Q +Q+ +M A+D+R+KA SE NMK+LKL AW+ F N ++ LR EY L +
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 534 AYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQ 593
+ F+ W +P L+S TF C + V L A V + +AT +++Q PI +PD++ +Q
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQ 180
Query: 594 ANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEV 653
+ V+ RI ++L+ E Q + N ++ ++ I++ +FSWE SS+PT+ +I L+V
Sbjct: 181 SKVSADRIASYLQQSETQKDAVEYCSN-DHTEFSVEIENGAFSWEPESSRPTLDDIELKV 239
Query: 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILF 713
+ G KVAICG VGSGKS+L ++ILGE+ +GT++V GK AYV Q+ WI +G+IR+NILF
Sbjct: 240 KSGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILF 299
Query: 714 GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773
GS +S +Y+ T++ C+LIKD EL GD TEIGERG+N+SGGQKQRIQ+ARA+YQ+ADI
Sbjct: 300 GSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADI 359
Query: 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833
YLLDDPFSAVDAHT LF D +M L K VL VTHQV+FLPA D +L+M +G +++A
Sbjct: 360 YLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAG 419
Query: 834 PYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQ 893
+ +LL + F+ L E S T ++K KE K
Sbjct: 420 KFEELLKQNIGFEVLTQCDSEHNIS------TENKK-----KEAK--------------- 453
Query: 894 LIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA----ANVE 949
L++ EE E G IG + Y+ YL KG L L+ F + QI N W+A E
Sbjct: 454 LVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAE 513
Query: 950 N-PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYD 1008
+ P + R+++VY L+ S+L +++R++ + G+ ++++ FS++L S+FRAPMS++D
Sbjct: 514 SIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSYFD 573
Query: 1009 STPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFL 1068
STP GRIL+R S+D S++DL++ L + + + V++ V WQV + IPV
Sbjct: 574 STPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVA 633
Query: 1069 AIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTN 1128
+ QRYY T +EL R++G ++ + +H AES+AGA TIRAF++ DRF + NL LID++
Sbjct: 634 CVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSH 693
Query: 1129 ASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSL 1188
+ P+FH +A EWL RL LS V + + +V LP G P G+ ++YGLSLN
Sbjct: 694 SRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQ 753
Query: 1189 VMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRP 1248
I N C N +ISVER+ Q+ +PSEAP V++D RP NWP VG + DLQ+RY
Sbjct: 754 ATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRDLQVRYAE 813
Query: 1249 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
P VLK I+C F GG KIG+VGRTGSGK+TL ALFR++EP+ G I++D
Sbjct: 814 HFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVID 863
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1335 | ||||||
| 255545090 | 1481 | multidrug resistance-associated protein | 0.971 | 0.875 | 0.789 | 0.0 | |
| 359490537 | 1532 | PREDICTED: ABC transporter C family memb | 0.970 | 0.845 | 0.769 | 0.0 | |
| 147838710 | 1480 | hypothetical protein VITISV_018996 [Viti | 0.970 | 0.875 | 0.768 | 0.0 | |
| 224116838 | 1423 | multidrug resistance protein ABC transpo | 0.926 | 0.869 | 0.788 | 0.0 | |
| 356535814 | 1479 | PREDICTED: ABC transporter C family memb | 0.970 | 0.875 | 0.744 | 0.0 | |
| 356534063 | 1509 | PREDICTED: ABC transporter C family memb | 0.970 | 0.858 | 0.713 | 0.0 | |
| 357443747 | 1516 | Multidrug resistance protein ABC transpo | 0.964 | 0.849 | 0.716 | 0.0 | |
| 302143690 | 1395 | unnamed protein product [Vitis vinifera] | 0.907 | 0.868 | 0.711 | 0.0 | |
| 356561462 | 1481 | PREDICTED: ABC transporter C family memb | 0.966 | 0.871 | 0.693 | 0.0 | |
| 359490553 | 1483 | PREDICTED: ABC transporter C family memb | 0.958 | 0.862 | 0.689 | 0.0 |
| >gi|255545090|ref|XP_002513606.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223547514|gb|EEF49009.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2110 bits (5466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1299 (78%), Positives = 1153/1299 (88%), Gaps = 2/1299 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
M DLW +FCG+SG SDI G+P + F++LS P+SC+NH+LII D LLL +LLF IQKS
Sbjct: 1 MEDLWTLFCGDSGSSDIKGRPFGSDFVVLSQPSSCVNHSLIIFLDFLLLVLLLFISIQKS 60
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
S K IP R + + LQ + V NG LG VYLC WILEEKLRK +ALPL+ LL+
Sbjct: 61 SLKRDKIPPRYRGLSYLQIGSLVFNGGLGFVYLCSGAWILEEKLRKDQSALPLSRSLLLF 120
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
FQG TWLLV+L +SLRG LPR P+RLL+V++F+ AGIVC LS+FAAIL V++KTALD
Sbjct: 121 FQGFTWLLVSLTISLRGKQLPRTPLRLLAVVAFVVAGIVCALSLFAAILGDIVSVKTALD 180
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
V+SFPGAIL+L CAYK + EE D I ENGLYAPLNGE +G+ K DS Q+T F AGF
Sbjct: 181 VVSFPGAILMLFCAYKSYVEEEVD--ISENGLYAPLNGETDGISKADSFVQVTPFGKAGF 238
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F ++FWWLN LMK+G+EKTL DEDIP LR+AEQAESCY FL+Q+NKQKQA+ SSQPS+
Sbjct: 239 FSSMSFWWLNSLMKKGKEKTLEDEDIPKLRQAEQAESCYLMFLEQVNKQKQAKSSSQPSL 298
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
RTI+ CHW+DI +SGFFA++K+LTLSAGPL LN FILVAE KA FKYEGY+LA+TLF++
Sbjct: 299 FRTIISCHWKDILISGFFAMLKILTLSAGPLLLNNFILVAEGKASFKYEGYVLALTLFIS 358
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K LESLSQRQ YFRSRLIGLKVRSLLTAAIYRKQLRLSN RLMHSG EIMNYVTVDAYR
Sbjct: 359 KSLESLSQRQWYFRSRLIGLKVRSLLTAAIYRKQLRLSNTGRLMHSGSEIMNYVTVDAYR 418
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFPFWFHQ WTTS+QLCI+L+ILF+AVGLAT+AALVVI ITVLCNTPLAKLQHKFQ+K
Sbjct: 419 IGEFPFWFHQTWTTSLQLCISLVILFNAVGLATLAALVVIIITVLCNTPLAKLQHKFQSK 478
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
LM AQDERLKACSEA VNMKVLKLYAWE+HFKN IE LR VE+KWLSAVQLRKAYN FLF
Sbjct: 479 LMEAQDERLKACSEALVNMKVLKLYAWESHFKNVIENLREVEHKWLSAVQLRKAYNSFLF 538
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
WSSP+LVS ATFGACYFL VPL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 539 WSSPLLVSAATFGACYFLKVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFAR 598
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
I+ FLEAPELQ+ N++QK ++++ N A I SA+FSWEE+SSKPT+RN++LE+RPG KVA
Sbjct: 599 ILKFLEAPELQNGNLQQKQSMDSANHATLITSANFSWEENSSKPTLRNVNLEIRPGDKVA 658
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLA+ILGEVP+T GTIQV G+ AYVSQTAWIQTG+IRENILFGS MDS
Sbjct: 659 ICGEVGSGKSTLLASILGEVPNTVGTIQVSGRIAYVSQTAWIQTGTIRENILFGSAMDSQ 718
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+YQ+TLERCSL+KD ELLPYGD TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF
Sbjct: 719 RYQDTLERCSLVKDFELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 778
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDA TA+SLFN+YVM AL+ K VLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA
Sbjct: 779 SAVDAQTATSLFNEYVMGALARKTVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 838
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EFQELV+AH+ETAGSERL ++T +QK G EIKK +VEKQ +V+KGDQLIKQEER
Sbjct: 839 SSQEFQELVNAHRETAGSERLTDITNTQKRGSSTVEIKKTYVEKQLKVAKGDQLIKQEER 898
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
ETGD GLKPY+QYLNQNKG+L+FSIA+LSHLTFVIGQI QNSW+AANV+ P VS LRLI
Sbjct: 899 ETGDTGLKPYLQYLNQNKGYLYFSIAALSHLTFVIGQIAQNSWMAANVDKPQVSPLRLIA 958
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYL+IG STLFL+ RSLS+VVLG++SSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS
Sbjct: 959 VYLIIGVSSTLFLLCRSLSTVVLGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1018
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
SDLSIVDLD+PFSLIFA+GATTNA SNLGVLAVVTWQVLFVSIP+I LAIRLQRYYF +A
Sbjct: 1019 SDLSIVDLDVPFSLIFAIGATTNAYSNLGVLAVVTWQVLFVSIPMIILAIRLQRYYFASA 1078
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KELMR+NGTTKSLVANHLAES+AGAMTIRAF EE+RFFAKNLDLIDTNASPFFHSFAANE
Sbjct: 1079 KELMRINGTTKSLVANHLAESVAGAMTIRAFGEEERFFAKNLDLIDTNASPFFHSFAANE 1138
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WLIQRLETLSATV++SAA CMVLLPPGTF+ GFIGMALSYGLSLN SLV SIQNQCT+AN
Sbjct: 1139 WLIQRLETLSATVLASAALCMVLLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCTIAN 1198
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
YIISVERLNQYMH+PSEAPEV++DNRPP NWP VGKVDICDLQIRYRP++PLVL+GISCT
Sbjct: 1199 YIISVERLNQYMHIPSEAPEVIQDNRPPSNWPAVGKVDICDLQIRYRPNAPLVLRGISCT 1258
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
F+GGHKIGIVGRTGSGKTTL GALFRL+EPA GKI+VDG
Sbjct: 1259 FQGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDG 1297
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490537|ref|XP_002267650.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2070 bits (5362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1299 (76%), Positives = 1141/1299 (87%), Gaps = 3/1299 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
MGDLW MFCGE C D GG C + F+ + P+SC NHAL +CFDILL M LF MIQ++
Sbjct: 53 MGDLWTMFCGEPSCLDSGG--CSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRT 110
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
SSK +++P + QRF+ LQ +A+ NGCLG+VYL L WILEE LRKT LPL+WWLL L
Sbjct: 111 SSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLGLGVWILEENLRKTQIVLPLHWWLLPL 170
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
QG TWLLV L+VSLRG +LPR+P+R+LS+L+FLF+GI VLSIF+AI+ K+ +++ L+
Sbjct: 171 LQGFTWLLVGLMVSLRGQYLPRSPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLN 230
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
VLS PGAILLLLCAYK +K+EETD + +GLY PLNGEA+G K DSV +T FA AGF
Sbjct: 231 VLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGF 290
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F ++FWWLNPLMKRG +KTL +EDIP LR+ ++AESCY QFL++L KQKQ EPSSQPSI
Sbjct: 291 FSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSI 350
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
LR I++C+W+DIF+SGFFAL+K+LTLS GPL LNAFI VAE K FK EGY+LA+ LF++
Sbjct: 351 LRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVS 410
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQ YFRSRLIGL+VRSLLTAAIY+KQLRLSNAA+++HS GEI NYVTVDAYR
Sbjct: 411 KNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDAYR 470
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFPFWFHQ WTTS+QLCI L+ILF+ +GLAT AALVVI +TVLCN PLAKLQHKFQ+K
Sbjct: 471 IGEFPFWFHQTWTTSLQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSK 530
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
LMVAQDERL+ACSEA VNMKVLKLYAWE HFKN IE LRNVEYKWLS VQLRK YNGFLF
Sbjct: 531 LMVAQDERLRACSEALVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLF 590
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
WSSPVLVS ATFGAC+FL +PL ASNVFTFVA LRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 591 WSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFAR 650
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQ+ N+RQK NIEN++ AISIKSA+FSWEE SK T+R+ISLEVR G+KVA
Sbjct: 651 IVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVA 710
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLAAILGE+P QGTI+VYG+ AYVSQTAWIQTGSI+ENILFGS MD
Sbjct: 711 ICGEVGSGKSTLLAAILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPE 770
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+YQ TLE+CSL+KDL+LLPYGD TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF
Sbjct: 771 RYQATLEKCSLVKDLDLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 830
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDAHTA+SLFN+YVM+ALSGK VLLVTHQVDFLPAFDSVLLMSDGEI++AAPY QLL
Sbjct: 831 SAVDAHTATSLFNEYVMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLV 890
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EF +LV+AHKETAGSERLAEVTP +K +EI K + EKQF+ GDQLIKQEER
Sbjct: 891 SSQEFVDLVNAHKETAGSERLAEVTP-EKFENSVREINKTYTEKQFKAPSGDQLIKQEER 949
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
E GD+G KPY+QYL+QNKG+LFFS+A+LSH+ FV GQI QNSW+AANV+NPN+STL+LIV
Sbjct: 950 EIGDMGFKPYMQYLSQNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIV 1009
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYLLIG STLFL+SR+L V LG++SSKSLF+QLLNSLFRAPMSFYDSTPLGRILSR+S
Sbjct: 1010 VYLLIGATSTLFLLSRALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRIS 1069
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
+DLSIVDLD+PFS +FA GATTNA SNLGVLAVVTWQVLFVSIP+I++AIRLQRYYF +A
Sbjct: 1070 NDLSIVDLDVPFSFVFAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASA 1129
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KELMR+NGTTKSLVANHLAESIAGAMTIRAFEEE+RFF KN+D IDTNASPFFHSFAANE
Sbjct: 1130 KELMRINGTTKSLVANHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANE 1189
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WLIQRLE LSA V+SS+A CM+LLPPGTFT GFIGMA+SYGLSLN SLV SIQNQC LAN
Sbjct: 1190 WLIQRLEALSAMVLSSSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILAN 1249
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
YIISVERLNQYMH+PSEAPEV+E +RPPPNWP VG+VDI DLQIRYRPD+PLVL+GI+CT
Sbjct: 1250 YIISVERLNQYMHIPSEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCT 1309
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
FEGGHKIGIVGRTGSGKTTL GALFRL+EPA GKI+VDG
Sbjct: 1310 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDG 1348
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838710|emb|CAN76203.1| hypothetical protein VITISV_018996 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2067 bits (5356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 998/1299 (76%), Positives = 1139/1299 (87%), Gaps = 3/1299 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
MGDLW FCGE C D GG C + F+ + P+SC NHAL +CFDILL M LF MIQ++
Sbjct: 1 MGDLWTXFCGEPSCLDSGG--CSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRT 58
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
SSK +++P + QRF+ LQ +A+ NGCLG+VYL L WILEE LRKT LPL+WWLL L
Sbjct: 59 SSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLXLGVWILEENLRKTQIVLPLHWWLLPL 118
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
QG TWLLV L+VSLRG +LPR+P+R+LS+L+FLF+GI VLSIF+AI+ K+ +++ L+
Sbjct: 119 LQGFTWLLVGLMVSLRGQYLPRSPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLN 178
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
VLS PGAILLLLCAYK +K+EETD + +GLY PLNGEA+G K DSV +T FA AGF
Sbjct: 179 VLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGF 238
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F ++FWWLNPLMKRG +KTL +EDIP LR+ ++AESCY QFL++L KQKQ EPSSQPSI
Sbjct: 239 FSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSI 298
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
LR I++C+W+DIF+SGFFAL+K+LTLS GPL LNAFI VAE K FK EGY+LA+ LF++
Sbjct: 299 LRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVS 358
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQ YFRSRLIGL+VRSLLTAAIY+KQLRLSNAA+++HS GEI NYVTVD YR
Sbjct: 359 KNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDXYR 418
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFPFWFHQ WTTS+QLCI L+ILF+ +GLAT AALVVI +TVLCN PLAKLQHKFQ+K
Sbjct: 419 IGEFPFWFHQTWTTSLQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSK 478
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
LMVAQDERL+ACSEA VNMKVLKLYAWE HFKN IE LRNVEYKWLS VQLRK YNGFLF
Sbjct: 479 LMVAQDERLRACSEALVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLF 538
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
WSSPVLVS ATFGAC+FL +PL ASNVFTFVA LRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 539 WSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFAR 598
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQ+ N+RQK NIEN++ AISIKSA+FSWEE SK T+R+ISLEVR G+KVA
Sbjct: 599 IVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVA 658
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLAAILGE+P QGTI+VYG+ AYVSQTAWIQTGSI+ENILFGS MD
Sbjct: 659 ICGEVGSGKSTLLAAILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPE 718
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+YQ TLE+CSL+KDL+LLPYGD TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF
Sbjct: 719 RYQATLEKCSLVKDLDLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 778
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDAHTA+SLFN+YVM+ALSGK VLLVTHQVDFLPAFDSVLLMSDGEI++AAPY QLL
Sbjct: 779 SAVDAHTATSLFNEYVMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLV 838
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EF +LV+AHKETAGSERLAEVTP +K +EI K + EKQF+ GDQLIKQEER
Sbjct: 839 SSQEFVDLVNAHKETAGSERLAEVTP-EKFENSVREINKTYTEKQFKAPSGDQLIKQEER 897
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
E GD+G KPY+QYL+QNKG+LFFS+A+LSH+ FV GQI QNSW+AANV+NPN+STL+LIV
Sbjct: 898 EIGDMGFKPYMQYLSQNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIV 957
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYLLIG STLFL+SR+L V LG++SSKSLF+QLLNSLFRAPMSFYDSTPLGRILSR+S
Sbjct: 958 VYLLIGATSTLFLLSRALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRIS 1017
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
+DLSIVDLD+PFS +FA GATTNA SNLGVLAVVTWQVLFVSIP+I++AIRLQRYYF +A
Sbjct: 1018 NDLSIVDLDVPFSFVFAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASA 1077
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KELMR+NGTTKSLVANHLAESIAGAMTIRAFEEE+RFF KN+D IDTNASPFFHSFAANE
Sbjct: 1078 KELMRINGTTKSLVANHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANE 1137
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WLIQRLE LSA V+SS+A CM+LLPPGTFT GFIGMA+SYGLSLN SLV SIQNQC LAN
Sbjct: 1138 WLIQRLEALSAMVLSSSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILAN 1197
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
YIISVERLNQYMH+PSEAPEV+E +RPPPNWP VG+VDI DLQIRYRPD+PLVL+GI+CT
Sbjct: 1198 YIISVERLNQYMHIPSEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCT 1257
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
FEGGHKIGIVGRTGSGKTTL GALFRL+EPA GKI+VDG
Sbjct: 1258 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDG 1296
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116838|ref|XP_002331826.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222875064|gb|EEF12195.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2017 bits (5226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 979/1242 (78%), Positives = 1103/1242 (88%), Gaps = 5/1242 (0%)
Query: 57 IQKSSSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWW 116
I +SSK I R + +++LQ V+ ++NG +G VYLCL WILEEKLRK T LPL W
Sbjct: 3 ISSASSKIYKITPRFRGYSSLQIVSVILNGGIGFVYLCLGIWILEEKLRKNQTVLPLRSW 62
Query: 117 LLVLFQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIK 176
L+VLFQG TWLLV L +SL G HL R P+RLLS+L+ L AGIVC LSI+ AIL + + ++
Sbjct: 63 LVVLFQGFTWLLVGLTISLLGKHLQRTPLRLLSILASLLAGIVCALSIYNAILGEGMLVR 122
Query: 177 TALDVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFA 236
ALDVLSFPGAILLLLC YKV+KHE + E +YAPLNGEANG+ K +SV+Q+T FA
Sbjct: 123 IALDVLSFPGAILLLLCVYKVYKHEGNE----ERDMYAPLNGEANGVSKINSVNQVTPFA 178
Query: 237 AAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSS 296
AGFF +++FWWLNPLM++G+EKTL DEDIP LR+AE+AESCY +FL+QLNKQKQAE SS
Sbjct: 179 KAGFFNKMSFWWLNPLMRKGKEKTLEDEDIPKLREAERAESCYMEFLEQLNKQKQAE-SS 237
Query: 297 QPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAIT 356
QPS+L TI+ CHW+DI +SGFFA++K+LTLSAGPL LNAFILVAE KAGFKYEGY+L +T
Sbjct: 238 QPSLLWTIVFCHWKDIVISGFFAMLKILTLSAGPLLLNAFILVAEGKAGFKYEGYVLVLT 297
Query: 357 LFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTV 416
LF +K LESLSQRQ YFRSRL+GLKVRSLLTAAIY+KQ RLSN RLMHSGGEIMNYVTV
Sbjct: 298 LFFSKSLESLSQRQWYFRSRLVGLKVRSLLTAAIYKKQQRLSNVGRLMHSGGEIMNYVTV 357
Query: 417 DAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHK 476
DAYRIGEFPFWFHQ WTTS QLC++L ILF AVGLAT+AALVVI ITVLCNTPLAKLQHK
Sbjct: 358 DAYRIGEFPFWFHQTWTTSFQLCLSLAILFRAVGLATLAALVVIIITVLCNTPLAKLQHK 417
Query: 477 FQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536
FQ+KLMVAQD RLKAC+EA VNMKVLKLYAWETHFKNAIE LRNVEYKWLSAVQ RKAYN
Sbjct: 418 FQSKLMVAQDARLKACNEALVNMKVLKLYAWETHFKNAIENLRNVEYKWLSAVQTRKAYN 477
Query: 537 GFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANV 596
GFLFWSSPVLVSTATFGACYFL +PL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA V
Sbjct: 478 GFLFWSSPVLVSTATFGACYFLKIPLHANNVFTFVATLRLVQDPIRSIPDVIGVVIQAKV 537
Query: 597 AFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPG 656
AF+RIV FLEAPELQ+ N+R K N+ +V+ A+ IKSA+FSWEE+SSKPT+RN+S +RPG
Sbjct: 538 AFARIVKFLEAPELQNGNVRHKRNMGSVDHAVLIKSANFSWEENSSKPTLRNVSFGIRPG 597
Query: 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSP 716
+KVAICGEVGSGKSTLLAAILGEVPHTQGTIQV G+ AYVSQTAWIQTGSI+ENILFGS
Sbjct: 598 EKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVCGRIAYVSQTAWIQTGSIQENILFGSE 657
Query: 717 MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776
MD +Y +TLERCSL+KDLELLPYGD TEIGERGVNLSGGQKQRIQLARALYQ+ADIYLL
Sbjct: 658 MDRQRYHDTLERCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLL 717
Query: 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYH 836
DDPFSAVDAHTA+SLFN+Y+M ALS K+VLLVTHQVDFLPAFDSV+LMSDGEIL+AAPYH
Sbjct: 718 DDPFSAVDAHTATSLFNEYIMGALSRKIVLLVTHQVDFLPAFDSVMLMSDGEILQAAPYH 777
Query: 837 QLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIK 896
QLL SS+EF +LV+AHKETAGSER EV SQ+ G +EIKK +VE Q + S+GDQLIK
Sbjct: 778 QLLLSSQEFLDLVNAHKETAGSERHTEVDASQRQGSSVREIKKSYVEGQIKTSQGDQLIK 837
Query: 897 QEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTL 956
QEE+E GD G KPY+QYLNQNKG+++FSIA+ SHL FVIGQI QNSW+AANV++P+VSTL
Sbjct: 838 QEEKEVGDTGFKPYVQYLNQNKGYVYFSIAAFSHLLFVIGQITQNSWMAANVDDPHVSTL 897
Query: 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRIL 1016
RLI VYL IG STLFL+ RS+S VVLG++SSKSLFSQLLNSLFRAPMSFYDSTPLGRIL
Sbjct: 898 RLITVYLCIGVTSTLFLLCRSISIVVLGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRIL 957
Query: 1017 SRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYY 1076
SRV+SDLSIVDLD+PF+LIFAVGATTNA SNLGVLAVVTWQVLFVSIP+++LAIRLQ YY
Sbjct: 958 SRVTSDLSIVDLDVPFTLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPMVYLAIRLQAYY 1017
Query: 1077 FVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSF 1136
F +AKELMR+NGTTKSLV+NHLAESIAGAMTIRAFEEE+RFFAK L+LID NASPFFHSF
Sbjct: 1018 FASAKELMRINGTTKSLVSNHLAESIAGAMTIRAFEEEERFFAKTLNLIDINASPFFHSF 1077
Query: 1137 AANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196
AANEWLIQRLE SATV++SAA CMVLLPPGTF GFIGMALSYGLSLN SLV SIQNQC
Sbjct: 1078 AANEWLIQRLEIFSATVLASAALCMVLLPPGTFNSGFIGMALSYGLSLNMSLVFSIQNQC 1137
Query: 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKG 1256
TLANYIISVERLNQYMH+PSEAPEV++DNRPP NWP GKVDICDLQIRYRP++PLVL+G
Sbjct: 1138 TLANYIISVERLNQYMHIPSEAPEVIKDNRPPSNWPEKGKVDICDLQIRYRPNAPLVLRG 1197
Query: 1257 ISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
ISCTFEGGHKIGIVGRTGSGKTTL GALFRL+EPA GKI+VD
Sbjct: 1198 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVD 1239
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535814|ref|XP_003536438.1| PREDICTED: ABC transporter C family member 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2006 bits (5196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 967/1299 (74%), Positives = 1110/1299 (85%), Gaps = 4/1299 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
M W +FCGESGCS+ G PC F LL DP++C+NH L CFD+LLL ML MIQKS
Sbjct: 1 MAGFWSVFCGESGCSEAGRMPCSYDFRLLIDPSTCVNHLLNSCFDVLLLIMLACIMIQKS 60
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
S K ++QR++ Q V+A+ NG LG+ LC W+LEEKLRK TALPLNWWLL +
Sbjct: 61 SLKPSRGLTQVQRYSYFQLVSAIANGALGLTLLCFGIWVLEEKLRKNQTALPLNWWLLEI 120
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
F G TWLLV+L ++L+ LP+A R SVL FL + C S+F AI S+++++K + D
Sbjct: 121 FHGLTWLLVSLTITLKLKQLPKAWSRPFSVLIFLVSDFFCASSVFYAISSRELSLKISSD 180
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
+LSF GAILLLLC YK KH +TD +I EN LYAPLNGE+N K DS+ +T FA GF
Sbjct: 181 ILSFLGAILLLLCTYKESKHRDTDSEIDEN-LYAPLNGESN---KNDSIRYVTPFAKTGF 236
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F R+TFWWLNPLMK G+EKTL DEDIP LR+ ++AESCY FLDQLN+QK + S QPS+
Sbjct: 237 FGRMTFWWLNPLMKMGKEKTLHDEDIPRLREEDRAESCYLLFLDQLNRQKLNDQSWQPSV 296
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
LRTI++CHW++I +SGFFAL+KV+ LS+GPL LN+FILVAE FKYEG++LAI+LF
Sbjct: 297 LRTIILCHWKEILISGFFALLKVVALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFT 356
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQ YFR RLIGLKVRSLLTAAIYRKQLRLSN+ARLMHS GEIMNYVTVDAYR
Sbjct: 357 KNIESLSQRQWYFRCRLIGLKVRSLLTAAIYRKQLRLSNSARLMHSSGEIMNYVTVDAYR 416
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFP+WFHQ WTTS QLCI+L+ILF AVG ATIA+LVVI ITVLCNTPLAKLQHKFQ+K
Sbjct: 417 IGEFPYWFHQTWTTSFQLCISLVILFRAVGWATIASLVVIVITVLCNTPLAKLQHKFQSK 476
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
LMV QD+RLKACSEA VNMKVLKLYAWET+F+++IE LRN E KWLSAVQLRKAYN FLF
Sbjct: 477 LMVTQDDRLKACSEALVNMKVLKLYAWETNFRSSIERLRNEELKWLSAVQLRKAYNTFLF 536
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
WSSPVLVS A+FGACYFLNVPL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 537 WSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFAR 596
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQS+NI Q+ EN +I IKSA FSWE++ SKPT+RNI+LEVRPGQKVA
Sbjct: 597 IVKFLEAPELQSVNITQRCLNENKRGSILIKSADFSWEDNVSKPTLRNINLEVRPGQKVA 656
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLAAIL EV +TQGT +VYGK AYVSQTAWIQTG+I+ENILFG+ MD+
Sbjct: 657 ICGEVGSGKSTLLAAILREVLNTQGTTEVYGKFAYVSQTAWIQTGTIKENILFGAAMDAE 716
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+YQETL R SL+KDLEL P+GD TEIGERGVNLSGGQKQRIQLARALYQ+ADIYLLDDPF
Sbjct: 717 KYQETLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPF 776
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDAHTA++LFN+Y+ME L+GK VLLVTHQVDFLPAFDSVLLMSDGEI+ AAPY+ LL+
Sbjct: 777 SAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIEAAPYYHLLS 836
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EFQ+LV+AHKETAGS+RL EVT QK A+EI+K E+ +E SKGDQLIKQEER
Sbjct: 837 SSQEFQDLVNAHKETAGSDRLVEVTSPQKQSNSAREIRKTSTEQHYEASKGDQLIKQEER 896
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
E GD G KPYIQYLNQNKG+++FS+A+LSHLTFV+GQILQNSW+AA+V+NP VSTL+LI+
Sbjct: 897 EKGDQGFKPYIQYLNQNKGYIYFSVAALSHLTFVVGQILQNSWMAASVDNPQVSTLQLIL 956
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYLLIG +STLFL+ RSL V LG++SSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS
Sbjct: 957 VYLLIGVISTLFLLMRSLFVVALGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1016
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
SDLSIVDLD+PF +FAVGAT N +NL VLAVVTWQVLFVSIP+I+ AI LQRYYF +A
Sbjct: 1017 SDLSIVDLDVPFGFVFAVGATMNCYANLTVLAVVTWQVLFVSIPMIYFAISLQRYYFASA 1076
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KELMRLNGTTKS VANHLAES+AGA+TIRAFEEEDRFF KNLDLID NASP+F SFAANE
Sbjct: 1077 KELMRLNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFEKNLDLIDVNASPYFQSFAANE 1136
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WLIQRLET+SA V++SAA CMV+LPPGTF+ GFIGMALSYGLSLN SLV SIQNQC +AN
Sbjct: 1137 WLIQRLETVSAVVLASAALCMVVLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCNIAN 1196
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
YIISVERLNQYMH+PSEAPEV+ NRPP NWPV G+V I +LQIRYRPD+PLVL+GI+CT
Sbjct: 1197 YIISVERLNQYMHIPSEAPEVIAGNRPPANWPVAGRVQINELQIRYRPDAPLVLRGITCT 1256
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
FEGGHKIGIVGRTGSGK+TL GALFRL+EPA GKI+VDG
Sbjct: 1257 FEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDG 1295
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534063|ref|XP_003535577.1| PREDICTED: ABC transporter C family member 10-like, partial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1927 bits (4993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 927/1299 (71%), Positives = 1100/1299 (84%), Gaps = 4/1299 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
M W MFCG+SGC++ GG PC+ F L DP++C+NH L IC ++LLL M+LF +++KS
Sbjct: 31 MEGFWSMFCGKSGCAETGGNPCNYDFKFLKDPSTCVNHLLFICINVLLLIMILFTILKKS 90
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
S K +++Q ++ LQ V+A+ NG LG+++LC W+LEE LR+T TALPL+WW+L
Sbjct: 91 SQKPSQGLIQVQSYSKLQLVSAIANGSLGLIHLCSGIWLLEENLRRTQTALPLDWWMLES 150
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
QG TWLLV ++L+ PRA + + SV+ F+ +GI+C LS+F AI ++ +++K ALD
Sbjct: 151 IQGLTWLLVGFTITLQLKQFPRAWLYIFSVVIFMVSGILCALSLFYAISTRKLSLKVALD 210
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
VLSFPG ILL LC YK K+ +T+ + E+ LY PL E+N K D VS +T +A AG
Sbjct: 211 VLSFPGIILLALCTYKESKYRDTERENNES-LYTPLKEESN---KVDYVSYVTLYAKAGL 266
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F R++FWW+NPLMKRG EKTL DEDIP L +A+QAESCYF FLDQLN+QKQ EPSSQPSI
Sbjct: 267 FSRMSFWWMNPLMKRGEEKTLQDEDIPKLGEADQAESCYFLFLDQLNRQKQKEPSSQPSI 326
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
L+TI++CHW++I +SGFFAL+KV+TLS+GPL LN+FILVAE FKYEGY+LAI+L
Sbjct: 327 LKTIIMCHWKEILISGFFALLKVVTLSSGPLLLNSFILVAEGHESFKYEGYVLAISLVFT 386
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
KI+ESLSQRQ YFR+RLIG+KVRSLL AAIY+KQLRLSNAARL+HSGGEIMNYV VDA R
Sbjct: 387 KIIESLSQRQWYFRTRLIGIKVRSLLIAAIYKKQLRLSNAARLVHSGGEIMNYVNVDANR 446
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFP+WFHQ WTTSVQLCIAL++LF AVGLAT A+L VI +TVLCNTPLAKLQHKFQ K
Sbjct: 447 IGEFPYWFHQTWTTSVQLCIALVVLFRAVGLATFASLAVIVLTVLCNTPLAKLQHKFQRK 506
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
LMV+QDERLKA SEA V+MKVLKLYAWET+F+NAIE LR+VE K LSAVQLR++Y+ FLF
Sbjct: 507 LMVSQDERLKATSEALVSMKVLKLYAWETNFRNAIERLRDVELKRLSAVQLRRSYSNFLF 566
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
W+SPVLVS A+FGACY LNVPL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 567 WASPVLVSAASFGACYLLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFAR 626
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FL+APELQS N +++ EN+ +I I S FSWE + SKPT+RNI+LEV PGQKVA
Sbjct: 627 IVKFLDAPELQSENAKKRCFSENMRGSILINSTDFSWEGNMSKPTLRNINLEVGPGQKVA 686
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLAAIL EVP T+GTI+V+GK AYVSQTAWIQTG+IR+NILFG+ MD+
Sbjct: 687 ICGEVGSGKSTLLAAILREVPITRGTIEVHGKFAYVSQTAWIQTGTIRDNILFGAAMDAE 746
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+YQETL R SL+KDLEL P GD TEIGERGVNLSGGQKQRIQLARALYQ+ADIYLLDDP
Sbjct: 747 KYQETLHRSSLVKDLELFPDGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPC 806
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDAHTA++LFNDY+ME L+GK VLLVTHQVDFLPAFDSVLLMS+GEI++AAPYH LL+
Sbjct: 807 SAVDAHTATNLFNDYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSNGEIIQAAPYHHLLS 866
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EFQ+LV+AHKETAGS RL +V+ S+ A EI K +++KQFE S+ QLIK+EE+
Sbjct: 867 SSQEFQDLVNAHKETAGSNRLVDVSSSKGDSNTATEISKIYMDKQFETSQEGQLIKKEEK 926
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
E G+ G KP++QYLNQ+KG+++F +ASLSHL FVIGQI QN W+A+NV+NP VSTL+LI
Sbjct: 927 EKGNKGFKPHLQYLNQDKGYIYFYVASLSHLIFVIGQIFQNLWMASNVDNPYVSTLQLIF 986
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYLLIGF+S FL RSL V + IRSSKSLF QLLNSLFRAPMSFYDSTPLGRILSRVS
Sbjct: 987 VYLLIGFISACFLFIRSLVVVSMSIRSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVS 1046
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
SDLSIVDLD+PF LIFAVGATT SNL V+A +TWQVLF+SIP++++A RLQRYY+ TA
Sbjct: 1047 SDLSIVDLDVPFGLIFAVGATTTCYSNLAVIAAITWQVLFISIPMLYIAFRLQRYYYATA 1106
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KELMR+NGTTKS VANHLAESIAG TIRAFEEEDRFFAKNLDLID NASP+FH++AANE
Sbjct: 1107 KELMRMNGTTKSFVANHLAESIAGVETIRAFEEEDRFFAKNLDLIDVNASPYFHTYAANE 1166
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WL+ RLET+SA V +SAA CMV+LPPGTFT GFIGMALSYGLSLNSSLV SIQNQCTLAN
Sbjct: 1167 WLMLRLETISAVVFASAALCMVVLPPGTFTSGFIGMALSYGLSLNSSLVFSIQNQCTLAN 1226
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
IISVERLNQYMH+PSEAPEV+E NRPP NWP GKV++ DL+IRYRPD+PLVL+GI+CT
Sbjct: 1227 QIISVERLNQYMHIPSEAPEVIEGNRPPVNWPAEGKVELHDLEIRYRPDAPLVLRGITCT 1286
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
FEGGHKIG+VGRTGSGK+TL GALFRL+EPA GKI+VDG
Sbjct: 1287 FEGGHKIGVVGRTGSGKSTLIGALFRLVEPAGGKIIVDG 1325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357443747|ref|XP_003592151.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355481199|gb|AES62402.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1915 bits (4962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1343 (71%), Positives = 1108/1343 (82%), Gaps = 55/1343 (4%)
Query: 1 MGDLWRMFCGESGCSDIGGKPC-HNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQK 59
M W +FC ESGCS KPC +N L DP++CINH LI CFD+LLL +LLF MIQK
Sbjct: 1 MTGFWSVFCDESGCS----KPCSYNDVKFLVDPSTCINHLLISCFDVLLLILLLFVMIQK 56
Query: 60 SSSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLV 119
S SK V QR++TLQ V+++ NG LG+V+L WI EEKLRK TALPL+ WLL
Sbjct: 57 SFSKPYQDLVNRQRYSTLQLVSSITNGVLGLVHLFFGIWIFEEKLRKNRTALPLDLWLLE 116
Query: 120 LFQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTAL 179
LFQG TWLLV L +SL+ LPRA +RL S+L FL +GI CVLS+F A+ S + +K AL
Sbjct: 117 LFQGLTWLLVGLTLSLKFKQLPRAWLRLFSILIFLVSGINCVLSLFYAMSSTQLPLKVAL 176
Query: 180 DVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAG 239
DVLSFP AILLLLC YK K+ + D +I E+ LYAPLNGE N K DSV ++T FA AG
Sbjct: 177 DVLSFPAAILLLLCTYKESKYRDGDREIDES-LYAPLNGELN---KNDSVCRVTLFAEAG 232
Query: 240 FFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPS 299
FF R++FWWLN LMKRG+E TL DED+P +R ++AESCY FLDQLNKQKQ +P SQPS
Sbjct: 233 FFSRMSFWWLNSLMKRGKENTLQDEDVPKVRDEDRAESCYLLFLDQLNKQKQKDPLSQPS 292
Query: 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFL 359
+L+TI++CH R+I +SGFFAL+KVL LS+GPL LN+FILV E FKYEG++LAI LF
Sbjct: 293 VLKTIVLCHSREILISGFFALLKVLALSSGPLLLNSFILVVEGFESFKYEGFVLAIALFF 352
Query: 360 AKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAY 419
KI+ESLSQRQ YF SRL+GLKVRSLLTA IY+KQLRLSN+ARL HS GEIMNYVTVDAY
Sbjct: 353 IKIIESLSQRQWYFHSRLVGLKVRSLLTAVIYKKQLRLSNSARLTHSSGEIMNYVTVDAY 412
Query: 420 RIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQT 479
RIGEFP+WFHQ WTTS QLCI+L+ILF A+G+ATIA+LVVI ITVLCN P+AKLQHKFQ+
Sbjct: 413 RIGEFPYWFHQTWTTSFQLCISLVILFRAIGIATIASLVVIVITVLCNAPIAKLQHKFQS 472
Query: 480 KLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFL 539
KLMVAQDERLKA SEA VNMKVLKLYAWET FKN+IE LRN E KW+SAVQLR+AYN FL
Sbjct: 473 KLMVAQDERLKATSEALVNMKVLKLYAWETSFKNSIEGLRNEELKWVSAVQLRRAYNTFL 532
Query: 540 FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFS 599
FWSSPVLVS A+FGACYFLNVPL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA VAF+
Sbjct: 533 FWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVAFA 592
Query: 600 RIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESS-SKPTMRNISLEVRPGQK 658
RI+ FLEAPELQS GN+ +ISIKSA FSWE+++ SK T+RNI+LEV+ GQK
Sbjct: 593 RILKFLEAPELQSEKRCSDGNMRG---SISIKSAEFSWEDNNVSKSTLRNINLEVKSGQK 649
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMD 718
VAICGEVGSGKS+LL+AILGEVP+T+G I VYGK AYVSQTAWIQTG+IR+N+LFGSPMD
Sbjct: 650 VAICGEVGSGKSSLLSAILGEVPNTRGKIDVYGKFAYVSQTAWIQTGTIRDNVLFGSPMD 709
Query: 719 SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
+ +YQETL R SL+KDLELLP+GD TEIGERGVNLSGGQKQRIQLARALYQ+ADIY+LDD
Sbjct: 710 AQKYQETLHRSSLVKDLELLPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYILDD 769
Query: 779 PFSAVDAHTASSLFN------------------------DYVMEALSGKVVLLVTHQVDF 814
PFSAVDA TA++LFN +Y+ME LS K VLLVTHQVDF
Sbjct: 770 PFSAVDAQTATNLFNVRTAFFLPILYSNLVNVSHPSFMPEYIMEGLSAKTVLLVTHQVDF 829
Query: 815 LPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPA 874
LPAFD VLLMSDGEIL+AAPYH LL SSK+FQ+LV+AHKETAGS RL +VT S + A
Sbjct: 830 LPAFDFVLLMSDGEILQAAPYHHLLTSSKDFQDLVNAHKETAGSNRLMDVTSSGRHSNSA 889
Query: 875 KEIKKGHV--EKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLT 932
KEI+K +V EKQFE KGDQLIKQEERE GD G +PY+QYL+QNKG+++FS+AS+SH+
Sbjct: 890 KEIRKTYVEKEKQFEALKGDQLIKQEEREIGDRGFRPYLQYLSQNKGYVYFSVASISHII 949
Query: 933 FVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLF 992
FVIGQILQNSW+AANV+NP V+TLRLI+VYL IG ST+FL+ RSL +V LG++SSKSLF
Sbjct: 950 FVIGQILQNSWMAANVDNPKVTTLRLILVYLFIGVTSTIFLLMRSLFTVALGLQSSKSLF 1009
Query: 993 SQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLA 1052
QLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD+PF L+FAVGATTN +NL VLA
Sbjct: 1010 LQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVGATTNCYANLTVLA 1069
Query: 1053 VVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 1112
VVTWQVLFVSIP+I+ A+RLQ YYF TAKELMR+NGTTKS VANHLAES+AGA+TIRAFE
Sbjct: 1070 VVTWQVLFVSIPMIYFALRLQGYYFATAKELMRMNGTTKSFVANHLAESVAGAVTIRAFE 1129
Query: 1113 EEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFT-- 1170
+E RFF KNL LID NA+PFFHSFAANEWLIQRLET+SA V++SAA CMV+LPPGTF+
Sbjct: 1130 QEGRFFVKNLGLIDINATPFFHSFAANEWLIQRLETVSAVVLASAALCMVILPPGTFSSA 1189
Query: 1171 --------------PGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPS 1216
GFIGMALSYGLSLN+SLV SIQNQC +ANYIISVERLNQYMHVPS
Sbjct: 1190 MSYESIIISTYDVISGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYMHVPS 1249
Query: 1217 EAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276
EAPE +E NRPP NWPVVG+V+I +LQIRYRPD+PLVL+GI+CTFEGGHKIGIVGRTGSG
Sbjct: 1250 EAPERIEGNRPPVNWPVVGRVEIKELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSG 1309
Query: 1277 KTTLRGALFRLIEPARGKILVDG 1299
KTTL GALFRL+EPA GKI+VDG
Sbjct: 1310 KTTLIGALFRLVEPAGGKIIVDG 1332
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143690|emb|CBI22551.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1893 bits (4903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 924/1299 (71%), Positives = 1060/1299 (81%), Gaps = 88/1299 (6%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
MGDLW MFCGE C D GG C + F+ + P+SC NHAL +CFDILL M LF MIQ++
Sbjct: 1 MGDLWTMFCGEPSCLDSGG--CSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRT 58
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
SSK +++P + QRF+ LQ +A+ NGCLG+VYL L WILEE LRKT LPL+W
Sbjct: 59 SSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLGLGVWILEENLRKTQIVLPLHW----- 113
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
+P+R+LS+L+FLF+GI VLSIF+AI+ K+ +++ L+
Sbjct: 114 ----------------------SPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLN 151
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
VLS PGAILLLLCAYK +K+EETD + +GLY PLNGEA+G K DSV +T FA AGF
Sbjct: 152 VLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGF 211
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F ++FWWLNPLMKRG +KTL +EDIP LR+ ++AESCY QFL++L KQKQ EPSSQPSI
Sbjct: 212 FSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSI 271
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
LR I++C+W+DIF+SGFFAL+K+LTLS GPL LNAFI VAE K FK EGY+LA+ LF++
Sbjct: 272 LRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVS 331
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQ YFRSRLIGL+VRSLLTAAIY+KQLRLSNAA+++HS GEI NYVTVDAYR
Sbjct: 332 KNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDAYR 391
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFPFW FH ++ +V+
Sbjct: 392 IGEFPFW------------------FHQTWTTSLQLCIVL-------------------- 413
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
VLKLYAWE HFKN IE LRNVEYKWLS VQLRK YNGFLF
Sbjct: 414 --------------------VLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLF 453
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
WSSPVLVS ATFGAC+FL +PL ASNVFTFVA LRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 454 WSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFAR 513
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQ+ N+RQK NIEN++ AISIKSA+FSWEE SK T+R+ISLEVR G+KVA
Sbjct: 514 IVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVA 573
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLAAILGE+P QGTI+VYG+ AYVSQTAWIQTGSI+ENILFGS MD
Sbjct: 574 ICGEVGSGKSTLLAAILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPE 633
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+YQ TLE+CSL+KDL+LLPYGD TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF
Sbjct: 634 RYQATLEKCSLVKDLDLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 693
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDAHTA+SLFN+YVM+ALSGK VLLVTHQVDFLPAFDSVLLMSDGEI++AAPY QLL
Sbjct: 694 SAVDAHTATSLFNEYVMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLV 753
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EF +LV+AHKETAGSERLAEVTP +K +EI K + EKQF+ GDQLIKQEER
Sbjct: 754 SSQEFVDLVNAHKETAGSERLAEVTP-EKFENSVREINKTYTEKQFKAPSGDQLIKQEER 812
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
E GD+G KPY+QYL+QNKG+LFFS+A+LSH+ FV GQI QNSW+AANV+NPN+STL+LIV
Sbjct: 813 EIGDMGFKPYMQYLSQNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIV 872
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYLLIG STLFL+SR+L V LG++SSKSLF+QLLNSLFRAPMSFYDSTPLGRILSR+S
Sbjct: 873 VYLLIGATSTLFLLSRALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRIS 932
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
+DLSIVDLD+PFS +FA GATTNA SNLGVLAVVTWQVLFVSIP+I++AIRLQRYYF +A
Sbjct: 933 NDLSIVDLDVPFSFVFAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASA 992
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KELMR+NGTTKSLVANHLAESIAGAMTIRAFEEE+RFF KN+D IDTNASPFFHSFAANE
Sbjct: 993 KELMRINGTTKSLVANHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANE 1052
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WLIQRLE LSA V+SS+A CM+LLPPGTFT GFIGMA+SYGLSLN SLV SIQNQC LAN
Sbjct: 1053 WLIQRLEALSAMVLSSSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILAN 1112
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
YIISVERLNQYMH+PSEAPEV+E +RPPPNWP VG+VDI DLQIRYRPD+PLVL+GI+CT
Sbjct: 1113 YIISVERLNQYMHIPSEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCT 1172
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
FEGGHKIGIVGRTGSGKTTL GALFRL+EPA GKI+VDG
Sbjct: 1173 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDG 1211
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561462|ref|XP_003549000.1| PREDICTED: ABC transporter C family member 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1876 bits (4859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 906/1306 (69%), Positives = 1085/1306 (83%), Gaps = 16/1306 (1%)
Query: 1 MGDLWRMFCGESGCSDIGGKP--CHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQ 58
M D W MFCGES C GGKP C++ F L DP++C N LIICFD+LLL ML F +IQ
Sbjct: 1 MEDFWSMFCGESDCPGTGGKPPFCYD-FKFLKDPSTCTNQFLIICFDLLLLIMLAFILIQ 59
Query: 59 KSSSKSLYIPVR-----LQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPL 113
S L+ P R L RF+ LQ ++A++NG LG+++LCL W+LEEKLRK+ T +PL
Sbjct: 60 NS----LFRPFRGHQFGLARFSNLQLISAIINGSLGLLHLCLGIWVLEEKLRKSLTLIPL 115
Query: 114 NWWLLVLFQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDV 173
+ WLL LFQG WLLV L VSL+ LPR+ + L S+L+ F+ + CVLS+ AI S+++
Sbjct: 116 DLWLLELFQGFRWLLVGLSVSLQFKQLPRSWLWLFSLLTLFFSTVFCVLSMSYAISSREL 175
Query: 174 TIKTALDVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQIT 233
+ K AL VLSFPG++LLLLC YK +K E+TD +I E GLY PLNG N + D + +T
Sbjct: 176 SFKEALGVLSFPGSVLLLLCTYKAYKCEDTDGEIDE-GLYDPLNGHFNEV---DPDNYVT 231
Query: 234 GFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAE 293
FA AGFF R++FWWLNPLMKRG+EKTL D+DIP LR++++AESCY FL+QLN++K E
Sbjct: 232 PFAKAGFFSRMSFWWLNPLMKRGKEKTLQDKDIPKLRESDRAESCYLSFLEQLNREKGKE 291
Query: 294 PSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLL 353
P SQ S+L TI+ CH R+I M+G FAL+KVLTLS GP+ LNAFILV+E FKYEGY+L
Sbjct: 292 PLSQSSVLWTIVFCHRREILMTGLFALLKVLTLSTGPVLLNAFILVSEGNESFKYEGYVL 351
Query: 354 AITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNY 413
I+LF+ KI+ESLSQRQ YFRSRL+G+KVRSLLTAAIY+K LRLS+AARL HSGGEIMNY
Sbjct: 352 VISLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNY 411
Query: 414 VTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKL 473
VTVDAYRIGEFP+WFHQ WTTS+Q+CIAL+ILF+A+G+ATIA+LVVI +TVLCN PLAKL
Sbjct: 412 VTVDAYRIGEFPYWFHQSWTTSLQICIALLILFNAIGVATIASLVVIVLTVLCNAPLAKL 471
Query: 474 QHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533
QHKFQ++LMVAQDERLKA +EA NMKVLKLYAWETHFKNAIE LRN+E K LS+VQLRK
Sbjct: 472 QHKFQSELMVAQDERLKASTEALTNMKVLKLYAWETHFKNAIERLRNLELKLLSSVQLRK 531
Query: 534 AYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQ 593
AYN FLFW+SP+LVS A+FG CYFLN+PL A+N+FTFVAT+RLVQ+PI IPDVIGV IQ
Sbjct: 532 AYNIFLFWTSPILVSAASFGTCYFLNIPLRANNLFTFVATIRLVQEPITAIPDVIGVVIQ 591
Query: 594 ANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEV 653
A VAF+RIV FLEAPELQS N R + E+ ISIKSA FSWE ++SK T+RNI+LE+
Sbjct: 592 AKVAFARIVKFLEAPELQSENFRNRSFDESNKSPISIKSADFSWEGNASKSTLRNINLEI 651
Query: 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILF 713
R GQK+AICGEVGSGKSTLLA ILGEVP +GTI+VYGK AYVSQTAWIQTG+I+ENILF
Sbjct: 652 RHGQKLAICGEVGSGKSTLLATILGEVPMIKGTIEVYGKFAYVSQTAWIQTGTIQENILF 711
Query: 714 GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773
GS +D+H+YQETL R SL+KDLEL P+GD TEIGERGVNLSGGQKQRIQLARALYQ+AD+
Sbjct: 712 GSDLDAHRYQETLRRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADV 771
Query: 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833
YLLDDPFSAVDAHTA++LFN+Y+M+ L K VLLVTHQVDFLPAFDSVLLMS+G+IL AA
Sbjct: 772 YLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGKILEAA 831
Query: 834 PYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQ 893
PYH LL+SS+EFQ+LV+AHK+TAGS++ VT S++ +EI + EK + + GDQ
Sbjct: 832 PYHHLLSSSQEFQDLVNAHKKTAGSDKPMNVTSSKRRSTSVREITQAFKEKHLKEANGDQ 891
Query: 894 LIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNV 953
LIK+EERE GD GLKPY+QYLNQ KG+++F +ASL HL FVI QILQNSW+AANV+N V
Sbjct: 892 LIKEEEREIGDTGLKPYMQYLNQTKGYIYFFVASLCHLLFVICQILQNSWMAANVDNSQV 951
Query: 954 STLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG 1013
STLRLIVVY LIG +ST+FL+ R+L V LGI+SS +LF L+NSLFRAPMSFYDSTPLG
Sbjct: 952 STLRLIVVYFLIGAISTIFLLIRTLLIVALGIQSSTNLFLLLMNSLFRAPMSFYDSTPLG 1011
Query: 1014 RILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQ 1073
RILSRVSSDLSI+DLD+PF + + VG TTN SNL VLA++TWQ+L V +P++++ IRLQ
Sbjct: 1012 RILSRVSSDLSIMDLDVPFIIAYTVGGTTNFYSNLAVLAIITWQILLVCVPMVYITIRLQ 1071
Query: 1074 RYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFF 1133
RYYF TAKE+MR+NGTTKS+VANH+AE+ AG +TIRAFEEEDRFF KNLDLID NASPFF
Sbjct: 1072 RYYFSTAKEVMRMNGTTKSIVANHVAETTAGVVTIRAFEEEDRFFEKNLDLIDINASPFF 1131
Query: 1134 HSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQ 1193
HSFA+NEWLIQRLE +SA ++SS A CMV+LPPGTF+ GFIGMALSYGLSLN+ LV SIQ
Sbjct: 1132 HSFASNEWLIQRLEIISAILLSSTALCMVMLPPGTFSSGFIGMALSYGLSLNAQLVFSIQ 1191
Query: 1194 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLV 1253
+QC LANYIISVERLNQYMH+PSEA EV+E NRPP NWPV GKV++ DL+IRYR D PL+
Sbjct: 1192 SQCNLANYIISVERLNQYMHIPSEAKEVIEGNRPPSNWPVAGKVELNDLKIRYRLDGPLI 1251
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
L GI+CTF+ GHKIGIVGRTGSGK+TL ALFRL+EPA GKI+VDG
Sbjct: 1252 LHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDG 1297
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490553|ref|XP_002266842.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1861 bits (4821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 896/1299 (68%), Positives = 1069/1299 (82%)
Query: 1 MGDLWRMFCGESGCSDIGGKPCHNAFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKS 60
MGDLW +FCGES CSD G + +F + + P+SCINHA ++CFDILLLAM + NMIQK+
Sbjct: 1 MGDLWTLFCGESNCSDTGRRTSSFSFAVFASPSSCINHAFLVCFDILLLAMFVSNMIQKA 60
Query: 61 SSKSLYIPVRLQRFTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWWLLVL 120
SK + IP R Q F+ LQ ++AV NGCLG VYL L WILEEKLRKTH+ PL+WW+L+L
Sbjct: 61 LSKRVRIPPRFQGFSPLQIISAVFNGCLGSVYLSLGIWILEEKLRKTHSVFPLHWWILLL 120
Query: 121 FQGATWLLVTLIVSLRGNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALD 180
F G TWL++ LIVSL G HL +AP R+LS+ +FL AG +CV S+ AI++K+V++KT LD
Sbjct: 121 FHGFTWLILALIVSLWGRHLSKAPFRVLSIFAFLLAGTICVFSLSPAIVNKEVSLKTTLD 180
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGF 240
VLSFPGA LL+ C +K +K +E++ + +GLY PL E G + DS S T FA AGF
Sbjct: 181 VLSFPGASLLIACVFKDYKDDESEETVNGSGLYTPLKEETPGNSEADSGSFATPFATAGF 240
Query: 241 FIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSI 300
F R+ FWWLNPLM++G EK L +EDIP LR+ +QA++CY QFL+QL+KQ+Q + S SI
Sbjct: 241 FSRMFFWWLNPLMRKGTEKILEEEDIPKLREVDQAKNCYLQFLEQLHKQQQNQTLSHASI 300
Query: 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
LRTI+ CHW++IF+SGFFAL+K L+L GPL L AF+ VAE + F +EG +LA++LF
Sbjct: 301 LRTIISCHWKEIFISGFFALLKTLSLLTGPLLLKAFVEVAEDQKNFTFEGCVLALSLFFG 360
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLS+RQ YFRSR+ G++VRS LTA IY+KQLRLSNAA+++HS GEI NYVTVDAYR
Sbjct: 361 KTIESLSERQWYFRSRITGMRVRSTLTAVIYKKQLRLSNAAKMVHSPGEITNYVTVDAYR 420
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IGEFPFWFHQ WTT +QLC+AL+ILF AVG AT+AA+VVI +TVLCN PLAKLQHK QTK
Sbjct: 421 IGEFPFWFHQTWTTILQLCVALVILFQAVGFATVAAMVVIVLTVLCNVPLAKLQHKLQTK 480
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540
M AQ +R+KA SEA VNMKVLKLYAWETHF+N IE LRNVE K LS VQL KAY F+F
Sbjct: 481 FMAAQAQRVKASSEALVNMKVLKLYAWETHFENVIEALRNVELKCLSRVQLLKAYYSFVF 540
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600
++SP+L+S ATFGACYFL VPLYASNVFTF+ATLRLVQDP+R IPDVIGV IQA +AFSR
Sbjct: 541 YASPILISGATFGACYFLGVPLYASNVFTFIATLRLVQDPVRFIPDVIGVVIQAKIAFSR 600
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPEL S N+++K ++E V+ +I I SA+FSW+ES S+ T+R+I+LEVRPG+KVA
Sbjct: 601 IVQFLEAPELHSGNVQKKNSMEIVDHSILINSANFSWDESLSELTLRSINLEVRPGEKVA 660
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH 720
ICGEVGSGKSTLLAAILGEVP+TQGTIQV GK AYVSQTAWIQTG+I+ENILFGS MD+
Sbjct: 661 ICGEVGSGKSTLLAAILGEVPNTQGTIQVRGKIAYVSQTAWIQTGTIQENILFGSEMDTQ 720
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+Y E LE SL+KDLE+ P+G+ TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF
Sbjct: 721 RYHEALESSSLVKDLEMFPHGELTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
SAVDAHTA+SL N+YVM ALSGK VLLVTHQVDFLPAF SVLLMSDG+IL AAPYHQLL
Sbjct: 781 SAVDAHTATSLLNEYVMRALSGKTVLLVTHQVDFLPAFGSVLLMSDGKILHAAPYHQLLT 840
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEER 900
SS+EFQ+ V+AH++TAGSERL EV ++ EIK+ H+E++F S DQLIKQEER
Sbjct: 841 SSQEFQDFVNAHQQTAGSERLTEVALPRRCETSTGEIKRTHIEREFNASGHDQLIKQEER 900
Query: 901 ETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIV 960
E G+ G KPY+ YLNQNK F F I L ++ F +G LQN W+A NVEN NVST +LIV
Sbjct: 901 EIGNPGFKPYMLYLNQNKQFWLFPIGVLCNIVFSVGLTLQNVWMATNVENSNVSTSQLIV 960
Query: 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVS 1020
VYL IG ST+FL+ R+L V LG++SSKSL +QLLNS FRAPMSFYDSTPLGR++SRVS
Sbjct: 961 VYLSIGCTSTVFLLCRTLLMVSLGLQSSKSLLAQLLNSFFRAPMSFYDSTPLGRMISRVS 1020
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080
SDL+I+DLD+ F +++ V +T C LGVLA VTWQVL VSIP I+LA+RLQ+YY+ +A
Sbjct: 1021 SDLNIIDLDLLFGIVYTVSSTAAVCVILGVLAAVTWQVLLVSIPTIYLAMRLQKYYYASA 1080
Query: 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140
KE+MR+NGTTKSLVANHLAES+AGAM IRAFE+EDRFFAK L LIDTNASPFFH+FAANE
Sbjct: 1081 KEMMRINGTTKSLVANHLAESVAGAMVIRAFEQEDRFFAKILHLIDTNASPFFHAFAANE 1140
Query: 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200
WLIQ L TLSAT++SS+A CMVLLP GT +PGFIGMALSYGLSLN SLV S +N CTL N
Sbjct: 1141 WLIQWLVTLSATILSSSALCMVLLPKGTCSPGFIGMALSYGLSLNLSLVNSTRNICTLEN 1200
Query: 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
YIISVERLNQYMH+PSEAPEV+ +NRPPPNWP VGKV+I LQIRYRP+ PLVL+GI C
Sbjct: 1201 YIISVERLNQYMHIPSEAPEVIHNNRPPPNWPDVGKVEIQKLQIRYRPNLPLVLRGIDCI 1260
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
FEGGHKIGIVGRTGSGKTTL ALFRL+EPA G+I+VDG
Sbjct: 1261 FEGGHKIGIVGRTGSGKTTLISALFRLVEPAGGRIIVDG 1299
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1335 | ||||||
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.934 | 0.858 | 0.654 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.583 | 0.514 | 0.381 | 2.5e-245 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.566 | 0.499 | 0.404 | 3e-240 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.880 | 0.801 | 0.392 | 3.4e-226 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.882 | 0.789 | 0.382 | 5.6e-226 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.602 | 0.522 | 0.369 | 3.4e-220 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.597 | 0.525 | 0.352 | 4.4e-213 | |
| UNIPROTKB|Q28689 | 1564 | ABCC2 "Canalicular multispecif | 0.455 | 0.388 | 0.349 | 1.8e-163 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.561 | 0.485 | 0.324 | 5.4e-163 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.490 | 0.411 | 0.331 | 6.2e-163 |
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4203 (1484.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 833/1272 (65%), Positives = 1005/1272 (79%)
Query: 33 NSCINHALIICFDILLLAMLL-FNMIQKSSSKSLYIPVRLQRFTTLQKVAAVVNGCLGIV 91
++C L ICF I L + L + K P R+ +F L+ V+A+ NG +G +
Sbjct: 17 SNCTVRFLQICFGITLSFLTLCICLFHKEP------PKRIHQFFCLRLVSALFNGIIGSL 70
Query: 92 YLCLATWILEEKLRKTHTALPLNWWLLVLFQGATWLLVTLIVSLRGNHLPRAPMRLLSVL 151
L L W+L R+ H+ PL WL++L QG TWL + LI+ +RG + ++ +RLLS+
Sbjct: 71 DLVLGIWVL----RENHSK-PLILWLVILIQGFTWLFINLIICVRGTRIRKSSLRLLSIF 125
Query: 152 SFLFAGIVCVLSIFAAILSKDVTIKTALDVLSFPGAILLLLCAYKVFKHEETDVKIGENG 211
SF + + LS+ A+ ++ ++T LDVL PG++LLLL AYK ++ +E+ GE+
Sbjct: 126 SFFYGLVSSCLSVNNAVFGDELAVRTILDVLLLPGSVLLLLSAYKGYRFDES----GESS 181
Query: 212 LYAPLN-GEANGLG-KGDSVSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDL 269
LY PLN G++NG K D ++++ FA AG F L+FWWLN L+KRG K L +EDIP+L
Sbjct: 182 LYEPLNAGDSNGFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPEL 241
Query: 270 RKAEQAESCYFQFLDQLNKQKQAEPSS-QPSILRTILICHWRDIFMSGFFALIKVLTLSA 328
RK E+AE+CY F + L +QK+ SS QPSIL+ ++C WR++ SGFFA +K++ +SA
Sbjct: 242 RKEERAETCYSLFEENLIEQKRRLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSA 301
Query: 329 GPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTA 388
GPL LNAFILVAE A F+YEG +LA+ LF +K++ESLSQRQ YFR R++GL+VRSLLTA
Sbjct: 302 GPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTA 361
Query: 389 AIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHA 448
AI +KQLRL+N++RL+HSG EIMNY TVDAYRIGEFP+WFHQ+WTTS QL IAL ILFH+
Sbjct: 362 AINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHS 421
Query: 449 VGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWE 508
VG+AT +AL VI +TVLCN P+AKLQ+KFQ++LM +QDERLKAC+E+ VNMKVLKLYAWE
Sbjct: 422 VGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWE 481
Query: 509 THFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVF 568
+HFK IE LRN+E K L AVQ+RKAYN LFWSSPV VS ATF CYFL++PL ASNVF
Sbjct: 482 SHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVF 541
Query: 569 TFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIE-NVNRA 627
TFVATLRLVQDP+R+IPDVIGV IQA VAFSRI FLEAPELQ R+K E N N
Sbjct: 542 TFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAI 601
Query: 628 IXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I P +RN+SLEV+ G+KVA+CGEVGSGKSTLLAAILGE P GTI
Sbjct: 602 IIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTI 661
Query: 688 QVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
YG AYVSQTAWIQTG+IR+NILFG MD H+Y+ET+++ SL KDLELLP GD TEIG
Sbjct: 662 DFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIG 721
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF +YVM+AL+GK VLL
Sbjct: 722 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLL 781
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPS 867
VTHQVDFLPAFDSVLLMSDGEI A Y +LLA S++FQ+LV+AH+ETAGSER+ V
Sbjct: 782 VTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRETAGSERVVAVENP 841
Query: 868 QKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIAS 927
K P KEI + + Q +V K +LIKQEERE GD GL+PYIQY+NQNKG++FF IAS
Sbjct: 842 TK---PVKEINRV-ISSQSKVLKPSRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIAS 897
Query: 928 LSHLTFVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRS 987
L+ +TF +GQILQNSW+AANV+NP VSTL+LI+VYLLIG S L LM RS+ V++ ++S
Sbjct: 898 LAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKS 957
Query: 988 SKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSN 1047
S SLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD+PF LIF V ++ N +
Sbjct: 958 SASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCS 1017
Query: 1048 LGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMT 1107
LGVLA+VTWQVLFVS+P+++LA RLQ+YYF TAKELMR+NGTT+S VANHLAES+AGA+T
Sbjct: 1018 LGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAIT 1077
Query: 1108 IRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPG 1167
IRAF+EE+RFF K+L LIDTNASPFFHSFAANEWLIQRLET+SA V++S AFCM+LLP G
Sbjct: 1078 IRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTG 1137
Query: 1168 TFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRP 1227
TF+ GFIGMALSYGLSLN LV S+QNQC LAN+IISVERLNQY H+ EAPEV+E+ RP
Sbjct: 1138 TFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRP 1197
Query: 1228 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRL 1287
P NWPV G+V+I DLQIRYR +SPLVLKGISCTFEGGHKIGIVGRTGSGKTTL ALFRL
Sbjct: 1198 PVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRL 1257
Query: 1288 IEPARGKILVDG 1299
+EP GKI+VDG
Sbjct: 1258 VEPVGGKIVVDG 1269
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1418 (504.2 bits), Expect = 2.5e-245, Sum P(3) = 2.5e-245
Identities = 304/797 (38%), Positives = 461/797 (57%)
Query: 116 WLLVLF---QGATWLLVT-LIVSLRGNHLPRAPMRLLSVLSFL-FAGIVCVLSIFAAILS 170
W ++ F Q W +++ L++ L+ + P L+ + FL F+ +C + + L+
Sbjct: 110 WFVLCFPASQSLAWFVLSFLVLHLKYKSSEKLPF-LVRIWWFLAFSICLCTMYVDGRRLA 168
Query: 171 KDVTIKTALDVLSFPGAILLL--LCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDS 228
+ + + V++ L LC V + L PL E +
Sbjct: 169 IEGWSRCSSHVVANLAVTPALGFLCFLAWRGVSGIQVTRSSSDLQEPLLVEEEA-----A 223
Query: 229 VSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNK 288
++T ++ AG +T WL+PL+ G ++ L +DIP L ++A+S Y +
Sbjct: 224 CLKVTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKR 283
Query: 289 QKQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKY 348
K PS PS+ R I+ W++ + FA + L GP ++ F+ K F +
Sbjct: 284 CKSENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPH 343
Query: 349 EGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGG 408
EGY+LA F +K++E+++ RQ Y ++G+ VRS LTA +YRK L+LS+ A+ H+ G
Sbjct: 344 EGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSG 403
Query: 409 EIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNT 468
EI+NY+ VD RIG++ ++ H IW +Q+ +AL IL+ +VG+A +A LV I++L
Sbjct: 404 EIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTI 463
Query: 469 PLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA 528
PLAK+Q +Q KLM A+DER++ SE NM+VLKL AWE ++ +E +R EY WL
Sbjct: 464 PLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRK 523
Query: 529 VQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVI 588
+A+ F+FWSSP+ V+ TF FL L A V + +AT R++Q+P+R PD++
Sbjct: 524 ALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLV 583
Query: 589 GVFIQANVAFSRIVNFLEAPELQS-MNIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMR 647
+ Q V+ RI FL+ ELQ + + N+ AI PT+
Sbjct: 584 SMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNI--AIEIKDGVFCWDPFSSRPTLS 641
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
I ++V G +VA+CG VGSGKS+ ++ ILGE+P G +++ G T YVSQ+AWIQ+G+I
Sbjct: 642 GIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNI 701
Query: 708 RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767
ENILFGSPM+ +Y+ ++ CSL KD+EL +GD T IGERG+NLSGGQKQR+QLARAL
Sbjct: 702 EENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARAL 761
Query: 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDG 827
YQDADIYLLDDPFSA+DAHT S LF DY++ AL+ K V+ VTHQV+FLPA D +L++ +G
Sbjct: 762 YQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEG 821
Query: 828 EILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFE 887
I+++ Y LL + +F+ LVSAH E + + + P ++ H K +
Sbjct: 822 RIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKS-D 880
Query: 888 VSKGD-QLIKQEERETG 903
V + D + + +E +E G
Sbjct: 881 VFENDIETLAKEVQEGG 897
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1438 (511.3 bits), Expect = 3.0e-240, Sum P(3) = 3.0e-240
Identities = 322/796 (40%), Positives = 467/796 (58%)
Query: 180 DVLSFPGAILLLLCAYKVFKHEETDVKIGENG-LYAPL-NGEANGLGKGDSVS------- 230
D+++F A+ L A V K + ++ NG L PL NG + +G DSV
Sbjct: 187 DIVAFIAAVFLGYVA--VLKKDRSN----SNGVLEEPLLNGGDSRVGGDDSVELNKTNGS 240
Query: 231 -QITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQ 289
+ T ++ AG LTF W++PL+ G +KTL ED+P L + +F L
Sbjct: 241 GEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESP 300
Query: 290 KQAEPSSQPS--ILRTILI-CHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF 346
E S + +++ + W +I ++ FFA I + GP ++ F+ + +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQW-EILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQY 359
Query: 347 KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHS 406
+EGY+L IT F AKI+E LSQR +FR + +G+++RS L A IY K L LS ++ +
Sbjct: 360 NHEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRT 419
Query: 407 GGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLC 466
GEI+N++TVDA RIG F ++ H W +Q+ +AL IL+ +GLA+IAALV I +L
Sbjct: 420 SGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLI 479
Query: 467 NTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWL 526
N P ++Q +FQ KLM A+D R+K+ SE NM++LKL WE F + I LR E WL
Sbjct: 480 NFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWL 539
Query: 527 SAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPD 586
A F+FW +P LVS +TFGAC L +PL + + + +AT R++Q+PI +PD
Sbjct: 540 KKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPD 599
Query: 587 VIGVFIQANVAFSRIVNFLEAPELQSMNIRQ--KGNIENVNRAIXXXXXXXXXXXXXXXP 644
I + +Q V+ R+ ++L LQ + + KG+ +V A+ P
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGS-SDV--AVEVINSTLSWDVSSSNP 656
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQT 704
T+++I+ +V PG KVA+CG VGSGKS+LL+++LGEVP G+++V G AYV+Q+ WIQ+
Sbjct: 657 TLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQS 716
Query: 705 GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764
G I +NILFG PM+ +Y + LE CSL KDLE+L +GD T IGERG+NLSGGQKQRIQ+A
Sbjct: 717 GKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 776
Query: 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824
RALYQDADIYL DDPFSAVDAHT S LF + ++ L K V+ VTHQV+FLPA D +L+M
Sbjct: 777 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVM 836
Query: 825 SDGEILRAAPYHQLLASSKEFQELVSAHKET-AGSERLAEVTPSQKSGMPAKEI--KKG- 880
DG I +A Y+ +L S +F EL+ AH+E A + + + S+KS + + + K
Sbjct: 837 KDGRISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAI 896
Query: 881 HVEKQFEVS--KGD---------QLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLS 929
V+++ E K D Q+I++EERE G + L Y +Y+ G L
Sbjct: 897 AVDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLG 956
Query: 930 HLTFVIGQILQNSWLA 945
+ F + QI N W+A
Sbjct: 957 QVLFQLLQIGSNYWMA 972
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2139 (758.0 bits), Expect = 3.4e-226, Sum P(2) = 3.4e-226
Identities = 472/1204 (39%), Positives = 692/1204 (57%)
Query: 114 NWW--LLVLFQGATWLLVTLIVSLR-GNHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILS 170
N W L +L TW +++ + R N + + LL V F + C + +L
Sbjct: 89 NGWPFLDLLLAALTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLY 148
Query: 171 KDVTIKTALDVLS-FPGAIL-LLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDS 228
K + + V+S G L LC ++K E + +I + L PL A D+
Sbjct: 149 KKQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGEGE-RI--DLLKEPLLSSAES---SDN 202
Query: 229 VSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNK 288
F+ AG R++F W++PL+ G EK + +D+P L +++ ES ++ F +L
Sbjct: 203 EEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEW 262
Query: 289 QKQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKY 348
+ +++ + + WRDI +S A + ++ P ++ F+ +K
Sbjct: 263 DDGERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKN 322
Query: 349 EGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGG 408
+GY+L T F+AK++E +QRQ +FR + GL +RS+L + IY K L L ++ H+ G
Sbjct: 323 QGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSG 382
Query: 409 EIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNT 468
EI+N + VDA RI F ++ H W +Q+ +AL IL+ ++GL +IAA + +L N
Sbjct: 383 EIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANY 442
Query: 469 PLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA 528
P AKL+ KFQ+ LM ++D R+K SE +NMK+LKL WE F + I LR++E WL
Sbjct: 443 PFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKK 502
Query: 529 -VQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDV 587
V A N L W++P +S FGAC L +PL + + +AT R++Q PI +P+
Sbjct: 503 FVYNSSAINSVL-WAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPET 561
Query: 588 IGVFIQANVAFSRIVNFLEAPELQSMNIRQ--KGNIENVNRAIXXXXXXXXXXXXXXXPT 645
I + +Q V+ +RI +FL +LQ + + G+ E A+ PT
Sbjct: 562 ISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSE---MAVEISNGTFSWDDSSPIPT 618
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+R+++ +V G VAICG VGSGKS+LL++ILGEVP G ++V G+ AY++Q+ WIQ+G
Sbjct: 619 LRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSG 678
Query: 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765
+ ENILFG PM+ Y LE CSL KDLE+LP+ D T IGERG+NLSGGQKQRIQ+AR
Sbjct: 679 KVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIAR 738
Query: 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825
ALYQDADIYL DDPFSAVDAHT S LF + ++ L K V+ VTHQV+FLP D +L+M
Sbjct: 739 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMK 798
Query: 826 DGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVT-PSQKSGMPAKEIKKGHVEK 884
DG+I +A YH++L S +F ELV AH E + E S+KS + H EK
Sbjct: 799 DGKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENEVLHHKEK 858
Query: 885 QFEVSKGD---QLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQN 941
Q S QL+++EERE G +G Y +Y+ G + + + F + I N
Sbjct: 859 QENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSN 918
Query: 942 SWL------AANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 995
W+ + +VE P VS LI+VY+L+ S+ ++ R+L + G + + LF+Q+
Sbjct: 919 YWMTWVTPVSKDVEPP-VSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQM 977
Query: 996 LNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVT 1055
+FRA MSF+D+TP+GRIL+R S+D S+ DL +P + A N +GV+ V
Sbjct: 978 HLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVA 1037
Query: 1056 WQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 1115
WQVL V IPV+ ++YY A+EL RL G ++S V +H +E+++G TIR+F++E
Sbjct: 1038 WQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEP 1097
Query: 1116 RFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 1175
RF + L D + FHS A EWL RLE LS +S+ +V P G P G
Sbjct: 1098 RFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAG 1157
Query: 1176 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 1235
+A++Y L+LN+ I C L N +ISVER+ QY ++PSE P V+E RP +WP G
Sbjct: 1158 LAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRG 1217
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ IC+LQ+RY P P+VL G++CTF GG K GIVGRTG GK+TL LFR++EPA G+I
Sbjct: 1218 EITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEI 1277
Query: 1296 LVDG 1299
+DG
Sbjct: 1278 RIDG 1281
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2142 (759.1 bits), Expect = 5.6e-226, Sum P(2) = 5.6e-226
Identities = 459/1199 (38%), Positives = 686/1199 (57%)
Query: 119 VLFQGATWLLVTLIV--SLRGNHLPRAP--MRLLSVLSFLFAGIVCVLSIFAAILSKDVT 174
+LF +W ++ + +H + P +R+ VL F+F+ ++ I A+ K
Sbjct: 108 LLFTALSWGAISFYIRSQFTYSHDQKFPILLRVWWVLYFMFSCYRLLVDI--ALYKKQEL 165
Query: 175 IKTAL---DVLSFP-GAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANG--LGKGDS 228
+ L DVL+ G L C K + E ++ + E L + A L K +
Sbjct: 166 VSVHLLLSDVLAVSVGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAED 225
Query: 229 VSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNK 288
+T F+ AGF ++F W++PL+ G EK + ED+P + +++AE ++ F +L
Sbjct: 226 DEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEW 285
Query: 289 QKQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKY 348
+ +++ + WRDI +S FA + ++ P ++ F+ + +
Sbjct: 286 DDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSN 345
Query: 349 EGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGG 408
+G +L T F+AK++E ++R YFR + G+ +RS+L + IY K L L ++ H+ G
Sbjct: 346 QGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSG 405
Query: 409 EIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNT 468
EI+N +TVDA RI F ++ H W +Q+ +AL+IL+ ++GL +IAA + +L N
Sbjct: 406 EIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNI 465
Query: 469 PLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA 528
PLAKL+ KFQ LM ++D R+K SEA +NM++LKL WE F + I LR +E WL
Sbjct: 466 PLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKK 525
Query: 529 VQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVI 588
A + W++P VS FGAC L +PL + + +AT R++Q PI +PD I
Sbjct: 526 FVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTI 585
Query: 589 GVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMRN 648
+ +Q V+ RI FL +LQ + + + + + PT+++
Sbjct: 586 SMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSS-KMDVEVSNGAFSWDDSSPIPTLKD 644
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIR 708
I ++ G +AICG VGSGKS+LL++ILGEVP G ++V G+ AY++Q+ WIQ+G +
Sbjct: 645 IRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVE 704
Query: 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768
ENILFG PM YQ LE CSL KDLE+ P+ D T IGERG+NLSGGQKQRIQ+ARALY
Sbjct: 705 ENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALY 764
Query: 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828
QDADIYL DDPFSAVDAHT S LF + ++ L K V+ VTHQ++FLP D +L+M DG
Sbjct: 765 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGR 824
Query: 829 ILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGH-VEKQFE 887
I +A Y+++L S +F ELV AH + + E + +KE K + EKQ E
Sbjct: 825 ITQAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVSNDEEKQEE 884
Query: 888 --VSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA 945
S QL+++EERE G +G Y +Y+ G I + + F + I N W+A
Sbjct: 885 DLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMA 944
Query: 946 -----ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLF 1000
+ P VS LI+VY+ + S+ ++ R++ S + G + + LF+Q+ +F
Sbjct: 945 WVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIF 1004
Query: 1001 RAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLF 1060
RA MSF+D+TP+GRIL+R S+D S VDL +P A N +GV+ V WQVL
Sbjct: 1005 RASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLI 1064
Query: 1061 VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 1120
V IPVI ++YY A+EL RL+G ++S + H +E+++G TIR+F++E RF
Sbjct: 1065 VFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTD 1124
Query: 1121 NLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSY 1180
+ L D + FH+ +A EWL RL+ LS + + +V +P G P F G+A++Y
Sbjct: 1125 IMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTY 1184
Query: 1181 GLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDIC 1240
L+LNS I C L N +ISVER+ QY+ +PSE V+E RP +WP G++ IC
Sbjct: 1185 ALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITIC 1244
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+LQ+RY P P+VL+G++CTF GG K GIVGRTG GK+TL LFR++EPA G+I +DG
Sbjct: 1245 NLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDG 1303
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 3.4e-220, Sum P(3) = 3.4e-220
Identities = 317/859 (36%), Positives = 477/859 (55%)
Query: 26 FLLLSDPNSCINHALIICFDILLLAMLLFNMIQK--SSSKS-------LYIPV---RLQR 73
F+LLS P C L D+L L +L F IQK SSS S + P+ R +
Sbjct: 35 FILLS-P--CPQRLLSSTVDVLFLLILFFFAIQKLCSSSSSRTNGEADITKPLLGRRTRT 91
Query: 74 FTT-LQKVAAVVNGCLGI--VYLCLATWILEE-KLRKTHTALPLNWWLLVLFQGATWLLV 129
TT L K VV L + LC++ + KL+ T +WL+ ++
Sbjct: 92 RTTGLFKTTVVVTIVLSFCSLVLCVSAFFTTRTKLKLVDTL----FWLIHAVTNV--VIA 145
Query: 130 TLIVSLRGNHLPRAPM--RLLSVLSFLFAGIVCVLSIFAAILSKDVTIKT--ALDV---L 182
L++ L+ P P+ R+ V +F+ + V I +LS D + A DV +
Sbjct: 146 VLVLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSGILH-LLSDDPAAASLRADDVASFI 204
Query: 183 SFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGFFI 242
SFP +LLL + K T V + + + AP + K ++VS +A+A F I
Sbjct: 205 SFPLTAVLLLVSIK----GSTGVVVTTSNVTAPAKSNDVVVEKSENVSL---YASASF-I 256
Query: 243 RLTFW-WLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSIL 301
TFW W+NPL+++G + L + +P L +AE F + K + E S P +
Sbjct: 257 SKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQ--ENSRNP--V 312
Query: 302 RTILI-CHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLA 360
RT LI C W++I + A+I++ + GP+ + +F+ K +GY L + L +A
Sbjct: 313 RTTLIRCFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIA 372
Query: 361 KILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +E LS Q F S+ +G+ +RS L A+Y+K L+L+ +AR H G+I+NY+ VDA +
Sbjct: 373 KFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQ 432
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVG---LATIAALVVITITVLCNTPLAKLQHKF 477
+ + H IW +Q+ A+++L++ +G + T+ L I + +L T K +++
Sbjct: 433 LSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGT---KRNNRY 489
Query: 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNG 537
Q LM+ +D R+KA +E M+V+K AWE HF I R +E+ WLS A N
Sbjct: 490 QFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNI 549
Query: 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVA 597
+ WS+PVL+S TF FL V L A VFT +++Q+PIR P + QA ++
Sbjct: 550 IVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMIS 609
Query: 598 FSRIVNFLEAPELQSMNIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQ 657
R+ ++ + EL + + + N A+ P + NI+ EV+ G+
Sbjct: 610 LGRLDAYMMSRELSEETVERSQGCDG-NVAVEIKDGSFSWDDEDDEPAIENINFEVKKGE 668
Query: 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPM 717
AI G VGSGKS+LLA++LGE+ G ++V G TAYV+QT+WIQ G++++NILFG PM
Sbjct: 669 LAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPM 728
Query: 718 DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777
+ +Y E L+ C L KD++++ +GD TEIGERG+NLSGGQKQRIQLARA+YQ++D+YLLD
Sbjct: 729 NRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLD 788
Query: 778 DPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837
D FSAVDAHT S +F V AL GK +LLVTHQVDFL D +L+M DG I+++ Y +
Sbjct: 789 DVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDE 848
Query: 838 LLASSKEFQELVSAHKETA 856
L++S +F ELV+AH ET+
Sbjct: 849 LVSSGLDFGELVAAH-ETS 866
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.4e-213, Sum P(2) = 4.4e-213
Identities = 297/842 (35%), Positives = 464/842 (55%)
Query: 74 FTTLQKVAAVVNGCLGIVYLCLATWILEEKLRKTHTAL-PLNWWLLVLFQGATWLLVTLI 132
F T V +++ C V LC+ + + + ++ + PL W L T L++ ++
Sbjct: 99 FKTTVAVTVLLSFCS--VVLCVLAFTGKRRTQRPWNLIDPLFW----LIHAVTHLVIAVL 152
Query: 133 VSLRG-----NHLPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALDV---LSF 184
V + NH P + +R+ + SF+ + V IF LS T A DV SF
Sbjct: 153 VLHQKRFAALNH-PLS-LRIYWISSFVLTSLFAVTGIFH-FLSDAATSLRAEDVASFFSF 209
Query: 185 PGAILLLLCAYKVFKHEETDVKIGENGLYAPLN-GEANGLGKGDSVSQITGFAAAGFFIR 243
P LL+ + + T + E +P +A + K D+VS +A+A F +
Sbjct: 210 PLTAFLLIASVRGI----TGLVTAETN--SPTKPSDAVSVEKSDNVSL---YASASVFSK 260
Query: 244 LTFW-WLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILR 302
TFW W+NPL+ +G + L E +P L +AE F + + K +E SS P I
Sbjct: 261 -TFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLF--ESSWPKPSENSSHP-IRT 316
Query: 303 TILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKI 362
T+L C W++I + A++++ + GP+ + +F+ K ++GY L + L +AK
Sbjct: 317 TLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKF 376
Query: 363 LESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIG 422
+E L+ Q F S+ +G+ +RS L A+Y+K L+L+ +AR H G+I+NY+ VDA ++
Sbjct: 377 VEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLS 436
Query: 423 EFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIT---ITVLCNTPLAKLQHKFQT 479
+ H IW +Q+ +AL++L+ ++G + I A++ +T + +L T + + +Q
Sbjct: 437 DMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFILLGT---QRNNGYQF 493
Query: 480 KLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFL 539
LM +D R+KA +E M+V+K AWE HF I R++E+ WLS A N +
Sbjct: 494 SLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIV 553
Query: 540 FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFS 599
WS+PVL+S TF L V L A VFT +++Q+PIR P + QA ++
Sbjct: 554 LWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLG 613
Query: 600 RIVNFLEAPELQSMNIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKV 659
R+ +++ + EL + + + N A+ P + +I+ +V+ G+
Sbjct: 614 RLDSYMMSKELSEDAVERALGCDG-NTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELT 672
Query: 660 AICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDS 719
AI G VGSGKS+LLA++LGE+ G ++V G T YV+QT+WI+ G++++NILFG PM
Sbjct: 673 AIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVR 732
Query: 720 HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
+Y + L CSL KDL+++ +GD TEIGERG+NLSGGQKQRIQLARA+YQ+ D+YLLDD
Sbjct: 733 EKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDV 792
Query: 780 FSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839
FSAVDAHT S +F V AL GK VLLVTHQVDFL D +L+M DG+I+ + Y +L+
Sbjct: 793 FSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELV 852
Query: 840 ASSKEFQELVSAHKET-----AGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQL 894
+S +F ELV+AH+ + AG++ A T + P + +E D+
Sbjct: 853 SSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEH 912
Query: 895 IK 896
IK
Sbjct: 913 IK 914
|
|
| UNIPROTKB|Q28689 ABCC2 "Canalicular multispecific organic anion transporter 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 1.8e-163, Sum P(5) = 1.8e-163
Identities = 219/627 (34%), Positives = 351/627 (55%)
Query: 254 KRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ--PS--ILRTILICHW 309
KR ++K+ + + L K Q++S L++ K+ + +++ P +++TI +
Sbjct: 259 KRQQKKSQKNSRLQGLNK-NQSQSQDVLVLEETKKKNKKSGTTKDFPKSWLVKTIFKTFY 317
Query: 310 RDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQR 369
+ S L+ L P L I + + GY+ AI LF +++S+
Sbjct: 318 MVLLKSFLLKLVYDLLTFLNPQLLKLLITFVSDPNSYAWLGYIFAILLFAVALIQSICL- 376
Query: 370 QRYFRSRL-IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF 428
Q YF +G+ V + + A +Y+K L +SN A+ ++ GE +N ++VDA ++ + +
Sbjct: 377 QTYFHMCFNLGMCVGTTVMATVYKKALTISNLAKRQYTIGETVNLMSVDAQKLMDVTNFI 436
Query: 429 HQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDER 488
H +W++ +Q+ +++ L+ +G + +A + V+ + + N LA Q K M +D+R
Sbjct: 437 HLVWSSVLQIVLSIYFLWVELGPSVLAGVGVMVLLIPVNGILATKNRNIQFKNMKYKDKR 496
Query: 489 LKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVS 548
L+ +E MK+LK +AWE FK+ + LR E K L ++ FL + +PVLVS
Sbjct: 497 LRIMNEILSGMKILKYFAWEPSFKDQVHNLRKKELKNLRTFAYMQSVVMFLLYLTPVLVS 556
Query: 549 TATFGACYFL---NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL 605
TF Y L N L A FT + +++ P+ ++P+VI +QA+V+ R+ +L
Sbjct: 557 VTTFSV-YVLVDSNNILDAEKAFTSITLFNILRFPMSMLPNVISAMLQASVSVDRLEKYL 615
Query: 606 EAPELQSMNIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEV 665
+L + I++ N + +A+ PT+RN++L++ PGQ VA+ G V
Sbjct: 616 SGDDLDTSAIQRDPNFD---KAVQFSEASFTWDRNLE-PTIRNVNLDIMPGQLVAVVGTV 671
Query: 666 GSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQET 725
GSGKS+L++A+LGE+ + G I + G TAYV Q +WIQ G+I++NILFG+ D +YQ
Sbjct: 672 GSGKSSLMSAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGAEFDERRYQRV 731
Query: 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
LE C+L+ DLE+LP GD EIGE+G+NLSGGQKQRI LARA YQ++DIY+LDDP SAVDA
Sbjct: 732 LEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISLARASYQNSDIYILDDPLSAVDA 791
Query: 786 HTASSLFNDYVME--ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
H +FN + L+GK LLVTH + FLP D ++++ +G IL Y LLA
Sbjct: 792 HVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQVDEIVVVENGTILEKGSYSSLLAKKG 851
Query: 844 EFQELVSAHKETAGSERLAEVTPSQKS 870
F + + + SE EVT + S
Sbjct: 852 VFAKNLKMFVKHTDSE--GEVTVNDGS 876
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 5.4e-163, Sum P(4) = 5.4e-163
Identities = 260/801 (32%), Positives = 414/801 (51%)
Query: 93 LCLATWILEEKLRKTHT-ALPLNWWLLVLFQGATWLLVTLIVSLRGNHLPRAPMR----- 146
L L TW+L ++ + + + W L LF W+L L S + L R ++
Sbjct: 106 LYLGTWLLVLLIQYSRRWCVQKDSWFLSLF----WILSILCGSFQFQTLIRTLLKDSNSN 161
Query: 147 -LLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALDVLSFPGAILLLLCAYKVFKHEETDV 205
S L F+ + ++ I +A KD + SF +I F ++ V
Sbjct: 162 LAYSCLFFIGYALQILVLILSAFSEKDASSNNPSFTASFLSSI--------TFSWYDSIV 213
Query: 206 KIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGFFIRLTFWWLNP----LMKRGREKTL 261
G PL E D QIT A F + L L K+ + T
Sbjct: 214 M---KGYKQPLTLE----DVWDVDEQITTKALVSKFEKYMVEELQKARKTLQKQQQRNTQ 266
Query: 262 GD--EDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ--PS--ILRTILICHWRDIFMS 315
G E + DL K Q++S L+++ K+K+ +++ P +++++ + + S
Sbjct: 267 GKSGERLHDLNK-NQSQSQDILVLEEVKKKKKKSGTTEKFPKSWLVKSLFKTFYVILLKS 325
Query: 316 GFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRS 375
L+ L P L I A + + GY ++ F+ +++SL Q YF+
Sbjct: 326 FLLKLVFDLLTFLNPQLLKLLISFANDPDMYVWTGYFYSVLFFVVALIQSLCL-QSYFQM 384
Query: 376 R-LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTT 434
++G+ VR+ + A+IY+K L LSN AR ++ GE +N ++VDA ++ + + H +W+
Sbjct: 385 CFMLGVNVRTTIMASIYKKALTLSNQARKQYTIGETVNLMSVDAQKLMDVTNFIHLLWSN 444
Query: 435 SVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSE 494
+Q+ +++ L+ +G + +A + V+ + + N LA Q K M +D+RLK +E
Sbjct: 445 VLQIALSIYFLWAELGPSILAGVGVMILLIPVNGLLASKSRAIQVKNMKNKDKRLKIMNE 504
Query: 495 AFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGA 554
+K+LK +AWE FKN + LR E K L ++ FL + +PVLVS TF
Sbjct: 505 ILSGIKILKYFAWEPSFKNQVHELRKKELKNLLTFGQMQSVMVFLLYLTPVLVSVITFSV 564
Query: 555 CYFL---NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQ 611
Y L N L A FT + +++ P+ ++P VI +QA+V+ R+ +L +L
Sbjct: 565 -YTLVDSNNVLDAEKAFTSITLFNILRFPLSMLPMVISSLLQASVSRERLEKYLGGDDLD 623
Query: 612 SMNIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKST 671
+ IR+ + + +A+ T+R+++L++ PGQ VA+ G VGSGKS+
Sbjct: 624 TSAIRRDSSSD---KAVQFSEASFTWDRDSEA-TIRDVNLDIMPGQLVAVVGTVGSGKSS 679
Query: 672 LLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSL 731
L++A+LGE+ G I + G AYV Q +WIQ G+I++NILFGS +D +YQ+ LE C+L
Sbjct: 680 LMSAMLGEMEDVHGHITIKGTIAYVPQQSWIQNGTIKDNILFGSELDEKRYQQVLEACAL 739
Query: 732 IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791
+ DLE+LP GD EIGE+G+NLSGGQKQRI LARA YQ++DIY+LDDP SAVDAH +
Sbjct: 740 LPDLEVLPGGDLAEIGEKGINLSGGQKQRISLARATYQNSDIYVLDDPLSAVDAHVGRHI 799
Query: 792 FNDYVME--ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
FN + L GK LLVTH + FLP D ++++ +G IL Y+ LLA F +++
Sbjct: 800 FNKVLGPNGLLKGKTRLLVTHSIHFLPQVDEIVVLGNGTILEKGSYNTLLAKKGLFAKIL 859
Query: 850 SAHKETAGSERLAEVTPSQKS 870
+ G E E T ++ S
Sbjct: 860 KTFTKQTGPE--GEATVNEDS 878
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 6.2e-163, Sum P(3) = 6.2e-163
Identities = 226/682 (33%), Positives = 379/682 (55%)
Query: 230 SQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQ 289
++I+ A F RLTFWW+N ++ +G +K L D+P L + +Q+ +F +Q
Sbjct: 201 NEISKEVNANLFSRLTFWWINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQ 260
Query: 290 KQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFK-- 347
+ S P L H+ +++ F +I+ L + GP L + ES+ G +
Sbjct: 261 LKKPNPSLPWALAKAFGPHF---YIAALFKIIQDLLIFVGPTLLKRVLGFVESRDGSQDT 317
Query: 348 YEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSG 407
Y+G + A+ FLA +++SL Q + R +G+ +RS + A+Y+K L+ S R +
Sbjct: 318 YDGLIYALLYFLAPVVQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALKTS--LREGTTI 375
Query: 408 GEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCN 467
GEI+N ++VDA + + + H IW+ +QL I+L++L+ + + A L ++ + + N
Sbjct: 376 GEIVNLMSVDAQKFMDLCPYLHMIWSAPLQLAISLVLLYRILNASVFAGLGIMLVMIPIN 435
Query: 468 TPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLS 527
++ L K QT M +D R KA +E +KV+KLY+WE F + + +RN E +
Sbjct: 436 LAISNLAKKRQTISMKLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHVNEIRNKELDVMK 495
Query: 528 AVQLRKAYNGFLFWS-SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPD 586
A++ + ++ L WS SPV VS +TF L A+ F ++ ++Q PI ++P
Sbjct: 496 AIKYIQGFS-LLLWSMSPVFVSVSTFTVYILTGQVLSATQAFPALSLFNVMQFPINMLPS 554
Query: 587 VIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNR-AIXXXXXXXXXXXXXXXPT 645
V+ I+A+V+ +R+ FL +L N+ + ++N I P
Sbjct: 555 VVSSIIEASVSVARLQKFLLKKDLDP-NVVE----HHINEPGIAVKIDNATLEWEPNKPI 609
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ +I+L ++ G+ VAI G+VGSGKS+++++++G++ T+GT+ V G A VSQ AWIQ
Sbjct: 610 LHDINLTIKKGELVAIVGQVGSGKSSIVSSLVGDLDKTKGTVAVNGSVALVSQQAWIQNA 669
Query: 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765
+++ NILF ++ +YQ ++ C L D+++LP GD TEIGE+G+NLSGGQKQR+ +AR
Sbjct: 670 TLKNNILFAKELNQDKYQSVVQACCLEPDIKILPGGDQTEIGEKGINLSGGQKQRVSIAR 729
Query: 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA---LSGKVVLLVTHQVDFLPAFDSVL 822
A+Y +ADIY+ DDP SAVDAH ++F + + L K +LVTH V +LP D ++
Sbjct: 730 AVYNNADIYIFDDPLSAVDAHVGKAIFKNVLSNQDGILCNKTRILVTHAVHYLPYVDRII 789
Query: 823 LMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHV 882
LM DG I+ ++ L+ + F EL+S H E ++L + KS ++I G
Sbjct: 790 LMKDGRIVEEGDFNTLIEAGSHFTELMS-HDEQ--QQQLQQQQAPDKSSDSNEQIGGGD- 845
Query: 883 EKQFEVSKGDQLIKQEERETGD 904
K+ E ++ +Q E E G+
Sbjct: 846 NKESENNE-----EQNEEEEGE 862
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LYS2 | AB10C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6520 | 0.9445 | 0.8678 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00006491001 | SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (1480 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00020275001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (227 aa) | • | 0.480 | ||||||||
| GSVIVG00020273001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (227 aa) | • | 0.480 | ||||||||
| GSVIVG00020272001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (227 aa) | • | 0.480 | ||||||||
| GSVIVG00020270001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (179 aa) | • | 0.480 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1335 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-98 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-67 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-62 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-54 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-51 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-51 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-46 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-43 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-41 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-41 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-41 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-41 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-40 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-39 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-38 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-37 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-36 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-35 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-34 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-34 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-34 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-34 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-33 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-33 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-33 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-33 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-33 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-32 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-31 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-30 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-30 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-29 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-27 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-27 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-27 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-26 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 4e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-26 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-25 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-25 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-25 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-25 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-24 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-24 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-24 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-24 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-24 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-23 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-23 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-23 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-22 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-22 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-22 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-22 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-22 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-22 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-22 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-21 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-20 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-20 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-20 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-20 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-19 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-19 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-19 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-18 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-18 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-17 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-17 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-17 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-17 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-17 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-17 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-17 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 9e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-16 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-16 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-16 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-16 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-15 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-15 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-15 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-15 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-15 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-14 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-14 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-14 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-14 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-14 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-14 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-14 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-14 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-13 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-13 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-13 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-13 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-13 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-12 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-12 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-12 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 7e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-12 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-11 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-11 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-11 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-11 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-11 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-11 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-10 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-10 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-10 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-09 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-09 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-09 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 7e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-08 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-08 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-08 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-08 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-08 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-08 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-07 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 8e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-06 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-06 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-06 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-06 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-06 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-05 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-05 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-05 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-05 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 6e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 8e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-05 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-04 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-04 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-04 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 1e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-04 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-04 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-04 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-04 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-04 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-04 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.001 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 0.001 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 0.001 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.002 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.002 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.002 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 0.002 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 0.002 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.002 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.002 | |
| cd01130 | 186 | cd01130, VirB11-like_ATPase, Type IV secretory pat | 0.002 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.003 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 0.003 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 0.003 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 0.004 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 0.004 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.004 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 648 bits (1673), Expect = 0.0
Identities = 361/1147 (31%), Positives = 583/1147 (50%), Gaps = 87/1147 (7%)
Query: 236 AAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQ------ 289
++A F R+TFWW+ + G + L + D+ L K + +E ++ K+
Sbjct: 205 SSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRK 264
Query: 290 ------------KQAEPSSQ--------------------PSILRTILICHWRDIFMSGF 317
+ + SSQ PS+ + + MS
Sbjct: 265 QPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFC 324
Query: 318 FALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL 377
F I L + GP L+ I ++GY LF+ L++L Q + +
Sbjct: 325 FKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFV 384
Query: 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQ 437
G+++++ + A+YRK L ++N+AR + GEI+N ++VDA R + + + IW+ +Q
Sbjct: 385 SGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQ 444
Query: 438 LCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFV 497
+ +AL L+ +G + +A + V+ + V N +A +Q M ++D R+K +E
Sbjct: 445 VILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILN 504
Query: 498 NMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYF 557
+KVLKLYAWE F + +E +R E K L A F + +P LV+ TF
Sbjct: 505 GIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVT 564
Query: 558 L--NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615
+ N L A F +A +++ P+ I+P VI +QA+V+ R+ FL EL+ +I
Sbjct: 565 VDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624
Query: 616 RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAA 675
++ +I++ +A+F+W PT+ I+ + G VA+ G+VG GKS+LL+A
Sbjct: 625 ERRTIKPGEGNSITVHNATFTWARDLP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSA 683
Query: 676 ILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDL 735
+L E+ +G + + G AYV Q AWIQ S+RENILFG ++ YQ+ LE C+L+ DL
Sbjct: 684 LLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743
Query: 736 ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795
E+LP GD TEIGE+GVNLSGGQKQR+ LARA+Y +ADIYL DDP SAVDAH +F
Sbjct: 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 796 V--MEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS--A 851
+ L K +LVTH + +LP D +++MS G+I Y +LL F E + A
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYA 863
Query: 852 HKETAGSERLAEVTPSQKSGMPAKEIKKG---------HVEKQFEVSKGD---------- 892
E G + G AK I+ G +++Q S D
Sbjct: 864 PDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGS 923
Query: 893 --------------QLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQI 938
+L++ ++ +TG + L Y Y+ F+ F L + + +
Sbjct: 924 SAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFL-FVCNHVSAL 982
Query: 939 LQNSWLAANVENP------NVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLF 992
N WL+ ++P N ++LRL VY +G + + S++ + GI++S+ L
Sbjct: 983 ASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFAVFGYSMAVSIGGIQASRVLH 1041
Query: 993 SQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLA 1052
LL++ R+PMSF++ TP G +++R S +L VD IP + +G+ N L V+
Sbjct: 1042 QDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVIL 1101
Query: 1053 VVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 1112
+ T + P+ L +QR+Y ++++L RL ++S V +H E++ G IRAFE
Sbjct: 1102 LATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFE 1161
Query: 1113 EEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPG 1172
E++RF ++ +D N ++ S AN WL RLE + ++ AA V + + + G
Sbjct: 1162 EQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAG 1220
Query: 1173 FIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWP 1232
+G+++SY L + L ++ + I++VERL +Y EAP +++ PP WP
Sbjct: 1221 LVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWP 1280
Query: 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
G+V+ + +RYR D LVL+ I+ T GG K+GIVGRTG+GK++L LFR+ E A
Sbjct: 1281 PRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 1293 GKILVDG 1299
G+I++DG
Sbjct: 1341 GEIIIDG 1347
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 637 bits (1646), Expect = 0.0
Identities = 368/1113 (33%), Positives = 601/1113 (53%), Gaps = 47/1113 (4%)
Query: 209 ENGLYAPLNGEANGLGKGDSVSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPD 268
++ Y L G QI A F R+ F W+ PLM+ G ++ L ++D+
Sbjct: 213 DDYEYEELPGG----------EQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWK 262
Query: 269 LRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSA 328
L +Q E+ Y F +++ + +P +LR + ++ GFF + L+
Sbjct: 263 LDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFV 319
Query: 329 GPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL-IGLKVRSLLT 387
GPL LN +L + + GY+ A ++F+ +L L + Q YF++ + +G ++RS L
Sbjct: 320 GPLLLN-LLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQ-YFQNVMRVGFRLRSTLV 377
Query: 388 AAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFH 447
AA++RK LRL++ R + G+I N +T DA + + H +W+ ++ IA+++L+
Sbjct: 378 AAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQ 437
Query: 448 AVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAW 507
+G+A++ +++ + T + K + + D+R+ +E M +K YAW
Sbjct: 438 QLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAW 497
Query: 508 ETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNV 567
E F++ ++ +R+ E W QL A+N F+ S PVLV+ +FG L L +
Sbjct: 498 ENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557
Query: 568 FTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRA 627
FT ++ +++ P+ ++P++I + ANV+ R+ L A E + +E A
Sbjct: 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV---LLPNPPLEPGLPA 614
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-HTQGT 686
ISIK+ FSW+ + +PT+ NI+L+V G VAI G G GK++L++A+LGE+P + +
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 687 IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
+ + G AYV Q +WI ++R+NILFGSP D +Y+ ++ +L DL+LLP GD TEI
Sbjct: 675 VVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEI 734
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
GERGVN+SGGQKQR+ +ARA+Y ++D+Y+ DDP SA+DAH +F+ + + L GK +
Sbjct: 735 GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRV 794
Query: 807 LVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGS-----ERL 861
LVT+Q+ FL D ++L+ +G I Y +L + FQ+L+ E AG E
Sbjct: 795 LVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLM----ENAGKMEEYVEEN 850
Query: 862 AEVTPSQKSGMPAK-----EIKKGHVEKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQ 916
E Q S P +KK K+ LIKQEERETG + K +Y N
Sbjct: 851 GEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNA 910
Query: 917 NKGFLFFSIASLSHLTFVIGQILQNSWLAANVENPNVST---LRLIVVYLLIGFVSTLFL 973
G I L ++ + ++ ++WL+ + T L ++Y L+ F L
Sbjct: 911 LGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVT 970
Query: 974 MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDI-PF 1032
+ S ++ + ++K L +L S+ RAPMSF+ + PLGRI++R + DL +D ++ F
Sbjct: 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVF 1030
Query: 1033 SLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKS 1092
+F +G S ++ +V+ L+ +P++ L YY TA+E+ RL+ T+S
Sbjct: 1031 VNMF-LGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRS 1089
Query: 1093 LVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSAT 1152
V E++ G TIRA++ DR N +D N + ++N WL RLETL
Sbjct: 1090 PVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGL 1149
Query: 1153 VISSAAFCMVLL-----PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLA-NYIISVE 1206
+I A V+ F +G+ LSY L++ +SL+ ++ +LA N + +VE
Sbjct: 1150 MIWLTASFAVMQNGRAENQAAFAST-MGLLLSYALNI-TSLLTAVLRLASLAENSLNAVE 1207
Query: 1207 RLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHK 1266
R+ Y+ +PSEAP V+E+NRPPP WP G + D+ +RYRP+ P VL G+S K
Sbjct: 1208 RVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEK 1267
Query: 1267 IGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+GIVGRTG+GK+++ ALFR++E RG+IL+DG
Sbjct: 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDG 1300
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 603 bits (1555), Expect = 0.0
Identities = 334/1080 (30%), Positives = 578/1080 (53%), Gaps = 32/1080 (2%)
Query: 238 AGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ 297
A F R+ F W+ PLM+ G K + ++D+ L + +Q E+ +F ++ + +
Sbjct: 232 ASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPK 288
Query: 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITL 357
P +LR + ++ G F + L+ GP+ L + +L + + + GY+ A +
Sbjct: 289 PWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVIL-SHLLQSMQEGDPAWVGYVYAFLI 347
Query: 358 FLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVD 417
F L + Q + +G ++RS L AAI+ K LRL++ AR + G++ N +T D
Sbjct: 348 FFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTD 407
Query: 418 AYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKF 477
A + + H +W+ ++ +++++L+ +G+A++ +++ + + T + + K
Sbjct: 408 ANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKL 467
Query: 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNG 537
+ + D+R+ +E +M +K YAWE F++ I+ +RN E W QL A+N
Sbjct: 468 TKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNS 527
Query: 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVA 597
F+ S PV+V+ +FG L L + FT ++ +++ P+ ++P+++ + ANV+
Sbjct: 528 FILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVS 587
Query: 598 FSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQ 657
RI L + E + Q ++ AISIK+ FSW+ +SKPT+ +I+LE+ G
Sbjct: 588 LQRIEELLLSEE---RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644
Query: 658 KVAICGEVGSGKSTLLAAILGEVPHTQGT-IQVYGKTAYVSQTAWIQTGSIRENILFGSP 716
VAI G G GK++L++A+LGE+ H + + + + G AYV Q +WI ++RENILFGS
Sbjct: 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSD 704
Query: 717 MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776
+S +Y ++ +L DL+LLP D TEIGERGVN+SGGQKQR+ +ARA+Y ++DIY+
Sbjct: 705 FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIF 764
Query: 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYH 836
DDP SA+DAH A +F+ + + L GK +LVT+Q+ FLP D ++L+S+G I +
Sbjct: 765 DDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFA 824
Query: 837 QLLASSKEFQELV-------SAHKETAGSERLAEVTPSQK---SGMPAKEIKKGHVEKQF 886
+L S F++L+ + + E + ++ P+ S K+G +
Sbjct: 825 ELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSV 884
Query: 887 EVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAA 946
L+KQEERETG I ++Y G I + +LT + ++ ++WL+
Sbjct: 885 -------LVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSI 937
Query: 947 NVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAP 1003
+ + IVVY L+GF + S + + ++K L +LNS+ RAP
Sbjct: 938 WTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAP 997
Query: 1004 MSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSI 1063
M F+ + P GR+++R S D+ +D ++ + + S ++ V+ L+ +
Sbjct: 998 MLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIM 1057
Query: 1064 PVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 1123
P++ L YY T++E+ RL+ T+S + E++ G +IRA++ DR N
Sbjct: 1058 PLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGK 1117
Query: 1124 LIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGF---IGMALS 1179
+D N + ++N WL RLETL +I +A F ++ GF +G+ LS
Sbjct: 1118 SMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLS 1177
Query: 1180 YGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDI 1239
Y L++ + L ++ N + SVER+ Y+ +PSEA ++E+NRP WP G +
Sbjct: 1178 YTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKF 1237
Query: 1240 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
D+ +RYRP P VL G+S K+G+VGRTG+GK+++ ALFR++E +G+I++D
Sbjct: 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDD 1297
|
Length = 1495 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-102
Identities = 110/204 (53%), Positives = 148/204 (72%), Gaps = 3/204 (1%)
Query: 628 ISIKSASFSWE--ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
IS++ ASF+W+ E + T+++I+LEV G+ VAI G VGSGKS+LL+A+LGE+ G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 686 TIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
++ V G AYVSQ WIQ G+IRENILFG P D +Y++ ++ C+L DLE+LP GD TE
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKV 804
IGE+G+NLSGGQKQRI LARA+Y DADIYLLDDP SAVDAH +F + ++ L K
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 805 VLLVTHQVDFLPAFDSVLLMSDGE 828
+LVTHQ+ LP D ++++ +G
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 345 bits (887), Expect = 4e-98
Identities = 229/717 (31%), Positives = 347/717 (48%), Gaps = 68/717 (9%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQ 698
E K +R++S+ V G+ + G GSGKSTLL ++L + ++G + AYV Q
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 699 TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758
AWI ++R NILF D+ + + + L DL L G TEIGE+GVNLSGGQK
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
R+ LARA+Y + D+YLLDDP SA+DAH + + + AL+GK +L THQV +P
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA 848
Query: 819 DSVLLMSDGEI---------LRAAPYHQLLASSKEFQELV--SAHKETAGSERLAEVTPS 867
D V+ + DG + +R + Y L A KE ++ A E A +
Sbjct: 849 DYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVD 908
Query: 868 QKSGMPAKEIKKGHVE-KQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIA 926
+ + +E + + + G +L+ +EE+ +G + Y+ YL G A
Sbjct: 909 HEPPVAKQEGNAEGGDGAALDAAAG-RLMTREEKASGSVPWSTYVAYLRFCGGLH---AA 964
Query: 927 SLSHLTFVIGQIL---QNSWLAA-NVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVV 982
TF + +++ WL+ + + +S + VYL I + T + R S
Sbjct: 965 GFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYE 1024
Query: 983 LGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATT 1042
R S+++ LL S+ R MSF+D+TPLGRIL+R S D+ I+D +P S ++ +
Sbjct: 1025 AMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLF 1084
Query: 1043 NACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESI 1102
+ CS++ V + VL +P +L RL ++Y +E+ R+ KS V L E++
Sbjct: 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 1103 AGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMV 1162
G+ TI A+ + + L +D S + AN WL R+E LS V++ A V
Sbjct: 1145 QGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGV 1204
Query: 1163 LLPPGTFTPGFIGMALSYGLSLNS-SLVMSIQNQCTLANYII-----------SVERLNQ 1210
+ G + A S + L S SL M++Q TL N+++ SVERL
Sbjct: 1205 I--------GTMLRATSQEIGLVSLSLTMAMQTTATL-NWLVRQVATVEADMNSVERLLY 1255
Query: 1211 YMH-VPSEA-PE----------------------VVEDNRPPPNWP---VVGKVDICDLQ 1243
Y VP E PE V+E P P G + +Q
Sbjct: 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQ 1315
Query: 1244 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+RYR PLVL+G+S K+GIVGRTGSGK+TL R++E G+I V+G+
Sbjct: 1316 MRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR 1372
|
Length = 1560 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 1e-67
Identities = 185/706 (26%), Positives = 324/706 (45%), Gaps = 61/706 (8%)
Query: 238 AGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ 297
A F +L FWW P++++G + L DI + + A++ + L++ ++ A
Sbjct: 9 ANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLS-ERLEREWDRELASAKKN 67
Query: 298 PSILRTILICH-WRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYE-GYLLAI 355
P +L + C WR +F + T + PL L I + + E Y LA+
Sbjct: 68 PKLLNALRRCFFWRFVFYGILLYFGEA-TKAVQPLLLGRIIASYDPFNAPEREIAYYLAL 126
Query: 356 TLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVT 415
L L I+ +L F +G+++R L + IY+K L+LS+ S G++++ ++
Sbjct: 127 GLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLS 186
Query: 416 VDAYRIGEFPFWFHQIWTTSVQ--LCIALII-LFHAVGLATIAALVVITITVLCNTPLAK 472
+ + E H +W +Q L + LI L G + L+++ + C L +
Sbjct: 187 NNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC---LGQ 243
Query: 473 LQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532
++ K ERL SE N++ +K Y WE + I+ +R E K +
Sbjct: 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYL 303
Query: 533 KAYNGFLFWSSPVLVSTATFGACYFLNVPLYA-------SNVFT---FVATLRLVQDPIR 582
+ + F+ S V FL+V YA +FT + LR+ R
Sbjct: 304 RYFYSSAFFFSGFFV--------VFLSVVPYALIKGIILRRIFTTISYCIVLRMTV--TR 353
Query: 583 IIPDVIGVFIQANVAFSRIVNFLEAPELQSMN-----------------------IRQKG 619
P I + + A ++I +FL E +++ + +K
Sbjct: 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKI 413
Query: 620 NIENVNRAISIKSAS--FSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
N R FS P ++NIS ++ GQ +A+ G GSGKS+LL I+
Sbjct: 414 KQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM 473
Query: 678 GEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLEL 737
GE+ ++G I+ G+ ++ QT+WI G+I++NI+FG D ++Y ++ C L +D+ L
Sbjct: 474 GELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIAL 533
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
P D T +GE G+ LSGGQ+ RI LARA+Y+DAD+YLLD PF+ +D T +F +
Sbjct: 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593
Query: 798 EALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAG 857
+ +S K +LVT +++ L D +LL+ +G + +L A +F L+ G
Sbjct: 594 KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL------LG 647
Query: 858 SERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEERETG 903
E + +++ + + +++ ++ V G + IKQ ++
Sbjct: 648 LEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPP 693
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 3e-62
Identities = 138/560 (24%), Positives = 248/560 (44%), Gaps = 26/560 (4%)
Query: 312 IFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQR 371
+ ++ L+ L PL + I + G E LL + L L + L Q
Sbjct: 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGV--LRALQS 73
Query: 372 YFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQI 431
Y +G K+ + L ++ K LRL + G++++ +T D + +
Sbjct: 74 YL-GSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVL 132
Query: 432 WTTSVQLCIALIILFHAVG-LATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLK 490
TS+ L I ++L ++ + L+++ + L + LA+ K ++ A E
Sbjct: 133 VFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNA 192
Query: 491 ACSEAFVNMKVLKLYAWETHFKNAIEIL-RNVEYKWLSAVQLRKAYNGFLFWSSPVLVST 549
E+ ++V+K + E E + L A +L + S +
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 550 A-TFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAP 608
G L+ L + F+ L + PI + +V+ + +A+ A R+ L+
Sbjct: 253 VLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE 312
Query: 609 ELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSG 668
+++ +I ++ SFS+ KP +++IS + PG+KVAI G GSG
Sbjct: 313 PEV---EDPPDPLKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVGPSGSG 367
Query: 669 KSTLLAAILGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGS 715
KSTL+ +L T G I + G + VSQ + +G+IRENI G
Sbjct: 368 KSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR 427
Query: 716 P-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774
P + +E L+ + + + LP G +T +GERGVNLSGGQ+QR+ +ARAL ++ I
Sbjct: 428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487
Query: 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834
+LD+ SA+D T + + D + + L G+ L++ H++ + D ++++ +G I+
Sbjct: 488 ILDEATSALDTETEALIQ-DALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546
Query: 835 YHQLLASSKEFQELVSAHKE 854
+ +LLA + L A
Sbjct: 547 HEELLAKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 187 bits (475), Expect = 9e-54
Identities = 89/219 (40%), Positives = 132/219 (60%), Gaps = 21/219 (9%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ + + FSW S T+ NI++ + GQ I G+VG GKS+LL AILGE+ +G +
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 688 -----------------QVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCS 730
+ AY +Q W+ ++ ENI FGSP + +Y+ + CS
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 731 LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASS 790
L D++LLP+GD TEIGERG+NLSGGQ+QRI +ARALYQ+ +I LDDPFSA+D H +
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 791 LFNDYVMEALSG--KVVLLVTHQVDFLPAFDSVLLMSDG 827
L + +++ L + ++LVTH++ +LP D ++ M DG
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 1e-51
Identities = 84/214 (39%), Positives = 133/214 (62%), Gaps = 2/214 (0%)
Query: 617 QKGNIENVNRAISIK--SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLA 674
+K EN +R S + FS P ++NI+L++ G+ +AI G GSGK++LL
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLM 81
Query: 675 AILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
ILGE+ ++G I+ G+ ++ SQ +WI G+I+ENI+FG D ++Y+ ++ C L +D
Sbjct: 82 LILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED 141
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
+ P DNT +GE G+ LSGGQ+ RI LARA+Y+DAD+YLLD PF +D T +F
Sbjct: 142 ITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201
Query: 795 YVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828
V + ++ K +LVT +++ L D +L++ +G
Sbjct: 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 6e-51
Identities = 162/607 (26%), Positives = 266/607 (43%), Gaps = 63/607 (10%)
Query: 282 FLDQLNKQKQ-AEPSSQPSILRTILICHWR---DIFMSGFFALIKVLTLSAGPLFLNAFI 337
L +K P S +L + R ++ ++ +++L L A PLF I
Sbjct: 125 LLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLL--LQLLAL-ATPLFSQIVI 181
Query: 338 ---LVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQ 394
L S++ +LAI L LA + E+L + R + +G ++ L+ +R
Sbjct: 182 DKVLPDASRSTL----TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHL 237
Query: 395 LRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQ-----IWTTSVQLCIALIILFHAV 449
LRL + S GEI++ V + +I EF I L ++ ++
Sbjct: 238 LRLPLSYFEKRSVGEIISRVR-ELEQIREF---LTGSILTLIIDLLFALIFLAVMFLYSW 293
Query: 450 GLA--TIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAW 507
L +AA+ + + L PL L+ K + KL+ E+ E ++ +K A
Sbjct: 294 KLTLIVLAAIPLNVLITLIFQPL--LRRKTR-KLIEESAEQQSFLVETIKGIETVKALAA 350
Query: 508 ETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPV--LVSTAT--FGACYFLNVPLY 563
E F++ + R + + K S + L S FGA L L
Sbjct: 351 EPRFRSQWD-NRLAKQV-NIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELT 408
Query: 564 ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623
+ F PI + + F QA VA R+ + L+ P Q + + ++
Sbjct: 409 LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD-KTLIHLPK 467
Query: 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683
+ I ++ SF + P + ++SLE+ PG+KVAI G GSGKSTLL +LG
Sbjct: 468 LQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526
Query: 684 QGTI-----------------QVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETL 726
QG I QV YV Q ++ +GSIRENI G+P + +E +
Sbjct: 527 QGRILLDGVDLNDIDLASLRRQVG----YVLQDPFLFSGSIRENIALGNPEAT--DEEII 580
Query: 727 ERCSLIK---DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783
E L +E LP G +T +GE G NLSGGQ+QR+ LARAL I LLD+ SA+
Sbjct: 581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSAL 640
Query: 784 DAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
D T ++ +++ L G+ V+++ H++ + + D ++++ G+I+ + +LLA
Sbjct: 641 DPETE-AIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
Query: 844 EFQELVS 850
+ L
Sbjct: 700 LYARLYQ 706
|
Length = 709 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-46
Identities = 141/576 (24%), Positives = 254/576 (44%), Gaps = 55/576 (9%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKY--EGYLLAITLFLAKILES 365
H + + A++ +L S G L L+ + + A + AG Y L + + IL +
Sbjct: 14 HKFGLLLGIVLAILTLLA-SIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRT 72
Query: 366 LSQRQRYFRSRLIG----LKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVT--VDA- 418
+ RY RL+ +V S L ++ K LS A L + G+++N + VDA
Sbjct: 73 AA---RYVE-RLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDAL 128
Query: 419 ---YRIGEFPFWFHQIWTTSVQLCIALIIL--FHAVGLATIAALVVITITVLCNTPLAKL 473
Y P ++ L + I F ++ LA + L+++ + ++ T +
Sbjct: 129 DNLYLRVIAP------AVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRA 182
Query: 474 QHKFQTKLMVAQDERLKACSEAFV-NMKVLKLYAWETHFKNAIEI----LRNVEYKWLSA 528
KF L + L++ +V L ++ E ++ A+E + K
Sbjct: 183 GRKFGAHLAQGR-AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARF 241
Query: 529 VQLRKAYNGFL--FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPD 586
L A + +L+ A L P A + A L + P+ P
Sbjct: 242 TGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFE-PLA--PG 298
Query: 587 VIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTM 646
Q + R+ + L+ + Q +A+ +++ SF++ +K +
Sbjct: 299 AFQHLGQVIASARRLNDILDQKPEVTFPDEQ---TATTGQALELRNVSFTYPGQQTKA-L 354
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693
+N +L + G+KVAI G GSGKSTLL + G QG+I + G
Sbjct: 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI 414
Query: 694 AYVSQTAWIQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752
+ ++Q + +G++R+N+ +P S + L++ L K LE P G NT +GE G
Sbjct: 415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRR 474
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812
LSGG+++R+ LARAL DA ++LLD+P +D T + + E GK +L+VTH++
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL-ALLFEHAEGKTLLMVTHRL 533
Query: 813 DFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
L D ++++ +G+I+ + +LLA++ ++ L
Sbjct: 534 RGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 3e-43
Identities = 78/246 (31%), Positives = 118/246 (47%), Gaps = 19/246 (7%)
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLE 652
A + L+A ++ S ++ P +R +S
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPVT--AAPAPSLEFSGVSVAYPGRR--PALRPVSFT 344
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------------AYVSQT 699
V PG++VA+ G G+GKSTLL +LG V T+G+I V G A+V Q
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404
Query: 700 AWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758
++ G+I ENI P + +E LER L + + LP G +T IGE G LSGGQ
Sbjct: 405 PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQA 464
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
QR+ LARA +DA + LLD+P + +DA T + + + G+ VLLVTH++
Sbjct: 465 QRLALARAFLRDAPLLLLDEPTAHLDAETE-AEVLEALRALAQGRTVLLVTHRLALAALA 523
Query: 819 DSVLLM 824
D ++++
Sbjct: 524 DRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-41
Identities = 139/598 (23%), Positives = 231/598 (38%), Gaps = 91/598 (15%)
Query: 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLF 358
++L I I I + A I + L G LF + L+ LL I L
Sbjct: 9 AVLSGIAI-----IAQAALLADI-LTKLIEGQLFQSLLPLLI-----------LLLIALV 51
Query: 359 LAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVT--V 416
L L L +R Y + + +R L+ + + G +
Sbjct: 52 LRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQ----KPAGSAATLALEGI 107
Query: 417 DAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITIT--------VLCNT 468
+ ++ + I +++ A+ AA +++ IT +L
Sbjct: 108 EQLEP-----YYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL 162
Query: 469 PLAKLQHKFQTKLMVAQD---ERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKW 525
K + L +RL+ ++ L+ + I ++ E
Sbjct: 163 AAKDASEKQFSALARLSGHFLDRLRG-------LETLRAF--GRTEATEERIRKDSE--- 210
Query: 526 LSAVQLRKAYNGFL---FWSSPVL-----VSTATFGACYFLNVPLYASNVFTFVATLRLV 577
RKA L F SS VL +S A A Y L ++ F L+
Sbjct: 211 ----DFRKATMSVLRIAFLSSAVLEFFAYLSIAL-VAVYIGFRLLGEGDLTLFAGLFVLI 265
Query: 578 QDPIRIIP--DVIGVF---IQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRA-ISIK 631
P P D+ F A ++ LE+P E N I I
Sbjct: 266 LAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVA---TPGSGEKAEVANEPPIEIS 322
Query: 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691
+ S+ KP + +++L ++ GQ A+ G G+GKSTLL +LG + TQG I+V G
Sbjct: 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG 382
Query: 692 KT-------------AYVSQTAWIQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLEL 737
++VSQ ++ G+IRENIL P S + L++ L +
Sbjct: 383 IDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGL-LEFVP 441
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
P G +T IGE G LSGGQ QR+ LARAL A + LLD+P + +DA T + +
Sbjct: 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ--AL 499
Query: 798 EALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKE 854
+ L+ K VL++TH+++ D ++++ +G ++ + +L + L+ +
Sbjct: 500 QELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 2e-41
Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 58/215 (26%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I K+ SFS+ KP ++++SL ++PG+KVAI G GSGKSTLL +L T G I
Sbjct: 1 IEFKNVSFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 688 QVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
+ G AYV Q ++ +G+IRENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
LSGGQ+QRI +ARAL +D I +LD+ SA+D T + +
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE- 137
Query: 795 YVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGE 828
+ AL+ GK V+++ H++ + D ++++ DG
Sbjct: 138 -ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-41
Identities = 84/272 (30%), Positives = 144/272 (52%), Gaps = 27/272 (9%)
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
+V FLE P +Q N ++I++ K ++ + GQ++A
Sbjct: 324 LVTFLETPLAHP---QQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIA 380
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------KTAYVSQTAWI-QT-----GSI 707
+ G G+GK++LL A+LG +P+ QG++++ G ++ +W+ Q G++
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439
Query: 708 RENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766
R+N+L G+P Q Q+ LE + + L LLP G +T IG++ LS GQ QR+ LARA
Sbjct: 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499
Query: 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL----SGKVVLLVTHQVDFLPAFDSVL 822
L Q + LLD+P +++DAH+ VM+AL + L+VTHQ++ L +D +
Sbjct: 500 LLQPCQLLLLDEPTASLDAHSE-----QLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 823 LMSDGEILRAAPYHQLLASSKEFQELVSAHKE 854
+M DG+I++ Y +L + F L++ +E
Sbjct: 555 VMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586
|
Length = 588 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 7e-41
Identities = 98/384 (25%), Positives = 170/384 (44%), Gaps = 20/384 (5%)
Query: 921 LFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSS 980
L ++ SL L +IG+I+ L L+++ LL+ + + +S
Sbjct: 24 LLSALLSLL-LPLLIGRIIDALLADLGEL------LELLLLLLLLALLGGVLRALQSYLG 76
Query: 981 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGA 1040
LG + L L L R P+SF+D G ++SR+++D+ V + L+ +
Sbjct: 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTS 136
Query: 1041 TTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAE 1100
+L +L ++W++ + + ++ L + +++L R + L E
Sbjct: 137 ILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLE 196
Query: 1101 SIAGAMTIRAF----EEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISS 1156
S++G I+AF E RF N +L N A L+ L +L ++ +
Sbjct: 197 SLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR-LEALLAPLMLLLSSLGTVLVLA 255
Query: 1157 AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPS 1216
+VL G+ T G + + Y L L + ++ + L + ERL + +
Sbjct: 256 LGGFLVLS--GSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL---D 310
Query: 1217 EAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276
E PEV + P P +G ++ ++ Y P VLK IS + E G K+ IVG +GSG
Sbjct: 311 EEPEVED--PPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSG 367
Query: 1277 KTTLRGALFRLIEPARGKILVDGK 1300
K+TL L RL +P G+IL+DG
Sbjct: 368 KSTLIKLLLRLYDPTSGEILIDGI 391
|
Length = 567 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-40
Identities = 147/590 (24%), Positives = 260/590 (44%), Gaps = 102/590 (17%)
Query: 310 RDIFMSGFFALIKVLTLSAGPLF-LNAFILVAESKAGFKYEG-YLLAITLFLAKILESLS 367
RD+ ++ LI +L L A PLF +N + V ++A +E ++LAI + LA + + +
Sbjct: 150 RDVLIASL--LINLLAL-ASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFV- 202
Query: 368 QRQRYFRSRLI---GLKVRSLLTAAIYRKQLRLSNAARLMHSGG------------EIMN 412
+ RS + G K +L+A ++ + L L AR G +
Sbjct: 203 --LKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQLREFESVRDFFT 260
Query: 413 YVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILF----HAVGLATIAALVVITITVLCNT 468
T+ A + + PF + L+++ V + +A +++ +L
Sbjct: 261 SATLTA--LIDLPFAL-----------LFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQR 307
Query: 469 PLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA 528
PL++L + M +R E+ ++ +K E F + +W
Sbjct: 308 PLSRLA----EESMRESAQRNAVLVESLSGLETIKALNAEGRF----------QRRWEQT 353
Query: 529 V--------QLRKAYNGFLFWSSPVLVSTATF--GACY----FLNVPLYASNVFT---FV 571
V + R F S+ + + A F + V L + T +
Sbjct: 354 VAALARSGLKSR-------FLSN-LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLI 405
Query: 572 ATLRL---VQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAI 628
A + L P+ + ++ + QA A + ++ P + + + + I
Sbjct: 406 ACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP-EGTRFLHRPRLQGEI 464
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688
++ SF++ P + N+SL +RPG+KVAI G +GSGKSTLL +LG T+G++
Sbjct: 465 EFRNVSFAYPGQE-TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 689 VYG-------------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKD 734
+ G YV Q + G++R+NI G+P D + E + +
Sbjct: 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEF 583
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
+ P G + +IGERG +LSGGQ+Q + LARAL +D I LLD+P SA+D + + F D
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEERFKD 642
Query: 795 YVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
+ L+GK ++LVTH+ L D +++M +G I+ P Q+L + ++
Sbjct: 643 RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 2e-39
Identities = 114/431 (26%), Positives = 206/431 (47%), Gaps = 48/431 (11%)
Query: 910 YIQYLNQNKGFLFFSI-----------ASLSHLTFVIGQI----LQNSWLAANVENPNVS 954
Y++Y+ N+ +F I ASL L ++I AN +P+V
Sbjct: 856 YLRYITTNRNLVFVLIFCLVIFLAEVAASLLGL-WLITDNPSAPNYVDQQHANASSPDVQ 914
Query: 955 TLRLI-------VVYLLIGFVSTLFLMS--RSLSSVVLGIRSSKSLFSQLLNSLFRAPMS 1005
+I + Y+ +G ++ + R L V + SK L Q+L+S+ +APM+
Sbjct: 915 KPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMA 974
Query: 1006 FYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPV 1065
++ GRIL+R + D++I+D +P +L + T + V++V+ + +IPV
Sbjct: 975 VLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034
Query: 1066 IFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF---FAKNL 1122
+ I L+ Y+ T+++L +L +S + +HL S+ G TIRAF + F F K L
Sbjct: 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKAL 1094
Query: 1123 DLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGL 1182
+L N +F + W R++ + + F + G +G+ L+ +
Sbjct: 1095 NLHTAN---WFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAM 1149
Query: 1183 SLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE--------------VVEDNRPP 1228
++ S+L ++ + + + SV R+ +++ +P E P V+E+
Sbjct: 1150 NILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQ 1209
Query: 1229 PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI 1288
WP G++D+ L +Y VL+ +S + EGG ++G++GRTGSGK+TL AL RL+
Sbjct: 1210 KCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269
Query: 1289 EPARGKILVDG 1299
G+I +DG
Sbjct: 1270 S-TEGEIQIDG 1279
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-38
Identities = 76/217 (35%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I ++ SFS+ P + N+SL +R G+KVAI G VGSGKSTLL + G T G+
Sbjct: 2 RIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 687 IQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLI 732
+ + G YV Q + G++R+NI G+P+ D + E +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
+ P G + +IGERG LSGGQ+Q + LARAL D I LLD+P SA+D ++ L
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 793 NDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+ + + L K ++++TH+ L D +++M G I
Sbjct: 181 -ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 8e-37
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 21/219 (9%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I K+ S + + P ++NIS ++PG+KV I G GSGKS+LL A+ V + G+I
Sbjct: 3 IEFKNVSLRYRPNL-PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61
Query: 688 QVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSH---QYQETLERCSL 731
+ G + + + Q + +G+IR N+ P + + + LER L
Sbjct: 62 LIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVGL 118
Query: 732 IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791
+ +E LP G +T + E G NLS GQ+Q + LARAL + + I +LD+ ++VD T + +
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 792 FNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830
+ EA VL + H++D + D +L++ G ++
Sbjct: 179 QK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 23/231 (9%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ +FS++E KP +++I+ ++PG+ VAI G G+GK+TL+ ++ +G I
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 688 QVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
+ G V Q ++ +G+I ENI G P + +E +E
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAGA 118
Query: 735 LEL---LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791
+ LP G +T +GE G NLS G++Q + +ARA+ +D I +LD+ S +D T +
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 792 FNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841
+E L G+ +++ H++ + D +L++ DG+I+ + +LLA
Sbjct: 179 QEA--LEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-35
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 27/270 (10%)
Query: 597 AFSRIVNFL-EAPELQSMNI---RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLE 652
A+SRI L EAP ++ + +G + ++I+ F++ ++ P + N++
Sbjct: 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGEL-----DVNIRQ--FTYPQTD-HPALENVNFT 337
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY-------------GKTAYVSQT 699
++PGQ + ICG GSGKSTLL+ I ++G I+ + + A VSQT
Sbjct: 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397
Query: 700 AWIQTGSIRENILFGSPMDSHQYQETLER-CSLIKDLELLPYGDNTEIGERGVNLSGGQK 758
++ + ++ NI G P + Q E + R S+ D+ LP G +TE+GERGV LSGGQK
Sbjct: 398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
QRI +ARAL +A+I +LDD SAVD T + ++ + + G+ V++ H++ L
Sbjct: 458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEA 516
Query: 819 DSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
+L+M G I + + QL S ++++
Sbjct: 517 SEILVMQHGHIAQRGNHDQLAQQSGWYRDM 546
|
Length = 569 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 24/239 (10%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ K+ +F + P +R+ISL++ G+ VA+ G GSGKSTL+ I G I
Sbjct: 1 VEFKNVTFRYPGDG-PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 688 QVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
+ G + VSQ ++ ++ ENI +G P + + E R + +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 735 L-ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
LP G +T IGERGV LSGGQ+QRI +ARAL +D I +LD+ SA+D +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-----E 174
Query: 794 DYVMEALS----GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
V AL + ++ H++ + D ++++ DG+I+ + +LLA + +L
Sbjct: 175 RLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-34
Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I K+ SF + P ++ +SL + PG+ VA+ G G GKST+++ + T G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 688 QVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
+ G + VSQ + G+I ENI +G P + + E + + I D
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 735 -LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
+ LP G +T +GERG LSGGQKQRI +ARAL ++ I LLD+ SA+DA + L
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES-EKLVQ 179
Query: 794 DYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSA 851
+ + A+ G+ +++ H++ + D + ++ +G+++ + +L+A + +LV A
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 7e-34
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 17/246 (6%)
Query: 617 QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
++++ + SF++ + P ++ +SL+++ G+KVA+ G G GKSTLL +
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386
Query: 677 LGEVPHTQGTIQVYGK--TAY-----------VSQTAWIQTGSIRENILFGSP-MDSHQY 722
QG I + G+ Y VSQ + + ++R+N+L +P
Sbjct: 387 TRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL 446
Query: 723 QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782
E L++ L K LE G N +GE G LSGG+++R+ +ARAL DA + LLD+P
Sbjct: 447 IEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEG 505
Query: 783 VDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842
+DA T + + + E K VL++TH++ L FD + +M +G+I+ + +LLA
Sbjct: 506 LDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
Query: 843 KEFQEL 848
+ +L
Sbjct: 565 GRYYQL 570
|
Length = 574 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 8e-34
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 41/236 (17%)
Query: 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
I +++ + S+ ++P + +ISL V G+ A+ G G+GKSTLL AILG + +
Sbjct: 2 MPMIEVENLTVSYG---NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58
Query: 685 GTIQVYGKT----------AYVSQ----------TAW--IQTGSIRENILFGSPMDSHQY 722
G I+++GK YV Q T + G + F +
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRL-NKKDK 117
Query: 723 QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782
++ E ++ + + D +IGE LSGGQKQR+ LARAL Q+ D+ LLD+PF+
Sbjct: 118 EKVDE---ALERVGMEDLRDR-QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 783 VDAHTAS---SLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAP 834
VD L + E GK VL+VTH + + A FD V+ ++ I P
Sbjct: 170 VDVAGQKEIYDLLKELRQE---GKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPP 222
|
Length = 254 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-33
Identities = 89/312 (28%), Positives = 153/312 (49%), Gaps = 2/312 (0%)
Query: 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLF 358
S+LRT+ ++ F L+ + P+ L F+ ++ G L +TLF
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 359 LAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNA--ARLMHSGGEIMNYVTV 416
L ++++S+ + Y+ S GL+ RS L A I+ K +S+ A+ + G I+N ++
Sbjct: 293 LTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMST 352
Query: 417 DAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHK 476
D RI F + +W++ + L +++++L VG + A+ V+ +T+ N + K Q
Sbjct: 353 DVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMA 412
Query: 477 FQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536
+ K+ A D R+KA +E F +++ K AWE F IE R E ++L VQL +
Sbjct: 413 ARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVAT 472
Query: 537 GFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANV 596
F+ ++P L+ F Y L L VF +A L +++ P +IP V +Q V
Sbjct: 473 SFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLV 532
Query: 597 AFSRIVNFLEAP 608
+ RI FLE
Sbjct: 533 SIKRISTFLECD 544
|
Length = 1560 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 65/235 (27%), Positives = 121/235 (51%), Gaps = 17/235 (7%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ +F+++ +P ++++S + G+KVAI G GSGKST+L + + G+I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 688 QVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
+ G V Q + +I NI +G P + + + + I D
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 735 -LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
+ P G +T +GERG+ LSGG+KQR+ +ARA+ ++ I LLD+ SA+D HT +
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ- 177
Query: 794 DYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
+ + G+ +++ H++ + D ++++ DG I+ + +LLA + E+
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 3e-33
Identities = 73/198 (36%), Positives = 106/198 (53%), Gaps = 17/198 (8%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ ++ S + + P + +SL++ PG++VAI G GSGKSTLLA + G + QG +
Sbjct: 335 LELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 688 QVYGKTA-------------YVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIK 733
+ G +Q A + ++REN+ P + LER L
Sbjct: 393 TLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLAD 452
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
L LP G +T +GE G LSGG++QR+ LARAL DA I LLD+P +DA TA L
Sbjct: 453 WLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE 512
Query: 794 DYVMEALSGKVVLLVTHQ 811
D ++ ALSG+ V+L+TH
Sbjct: 513 D-LLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-33
Identities = 114/528 (21%), Positives = 220/528 (41%), Gaps = 49/528 (9%)
Query: 345 GFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLT---AAIYRKQLRLSNAA 401
G + L + L + L L + + L+ ++ ++ K L L +
Sbjct: 46 GGRDRSVLWWVPLVVI-GLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSF 104
Query: 402 RLMHSGGEIMNYVTVDA-----YRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAA 456
G +++ +T D+ F + ++ + I+L + T+
Sbjct: 105 FDRQPTGTLLSRITFDSEQVASAATDAFIVLVRE----TLTVIGLFIVLLYYSWQLTLIV 160
Query: 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETH----FK 512
+V++ + + ++K + ++ + + E +V+KL+ + + F
Sbjct: 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFD 220
Query: 513 NAIEILRNVEYKWLSAVQLRKAYNGFLFWSS-PVLVSTATFGACYFLNVPLYASNVFTFV 571
R + K SA + + + V++ A F A L A + F+
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQA---QAGSLTAGDFTAFI 277
Query: 572 ATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIK 631
+ + P++ + +V + A + L++P + R IE + +
Sbjct: 278 TAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRA---IERARGDVEFR 334
Query: 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691
+ +F + +P + +ISL + PG+ VA+ G GSGKSTL+ I G I + G
Sbjct: 335 NVTFRYP-GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393
Query: 692 -------------KTAYVSQTAWIQTGSIRENILFGSP--MDSHQYQETLERCSLIKDLE 736
+ A VSQ + +I NI +G D + + L ++
Sbjct: 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD 453
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA----HTASSLF 792
LP G +T IGE GV LSGGQ+QR+ +ARAL +DA I +LD+ SA+D ++L
Sbjct: 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL- 512
Query: 793 NDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ +M+ G+ L++ H++ + D +++M DG I+ +++LLA
Sbjct: 513 -ERLMQ---GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-33
Identities = 99/431 (22%), Positives = 174/431 (40%), Gaps = 57/431 (13%)
Query: 904 DIGLKPYIQYLNQNKGFLF-----------FSIASLSHLTFVIGQILQNSWLAANVENPN 952
GL +I L + + LF ++A+ VI ++L ++ +
Sbjct: 139 PFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA---------S 189
Query: 953 VSTLRLIV-VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTP 1011
STL ++ LL L + R+ LG R L + L R P+S+++
Sbjct: 190 RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRS 249
Query: 1012 LGRILSRVSSDLSIVD----------LDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFV 1061
+G I+SRV I + +D+ F+LIF L V+ + +W++ +
Sbjct: 250 VGEIISRVRELEQIREFLTGSILTLIIDLLFALIF-----------LAVMFLYSWKLTLI 298
Query: 1062 SIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK- 1120
+ I L + + + + R + + L E+I G T++A E RF ++
Sbjct: 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQW 358
Query: 1121 ---NLDLIDTNASPFFHSFAANEW--LIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 1175
++ + N L+Q+L ++ + +VL G T G +
Sbjct: 359 DNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI---LVL--EGELTLGQLV 413
Query: 1176 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 1235
S + Q +++ERL + PE D + G
Sbjct: 414 AFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL---DTPPEQEGDKTLIHLPKLQG 470
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
+++ ++ RY PD P VL+ +S G K+ IVGR+GSGK+TL L L +P +G+I
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530
Query: 1296 LVDG-KLAEYD 1305
L+DG L + D
Sbjct: 531 LLDGVDLNDID 541
|
Length = 709 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-32
Identities = 129/529 (24%), Positives = 233/529 (44%), Gaps = 51/529 (9%)
Query: 352 LLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIM 411
LL + L LA L R++ +G +V + + A++ + LS + + GE++
Sbjct: 64 LLVVALVLA-----LGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVV 118
Query: 412 NYVTVDAYRIGEFPFWFHQIWTTSVQLCI-ALIILFHAVGLATIAALVVITITVLCNTPL 470
+ +T D + + + +CI LI++F T L+ + + +L P+
Sbjct: 119 SRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLL---PI 175
Query: 471 AKLQHKFQTKLMVAQDERLKACS----EAFVNMKVLKLYAWETHFKNAIEILRNVEYKWL 526
+ + +QD R+ E ++ ++ + E ++ VE +
Sbjct: 176 LLFGRRVRKLSRESQD-RIADAGSYAGETLGAIRTVQAFGHEDAERSRFG--GAVEKAYE 232
Query: 527 SAVQLRKAYNGFLFWSSPVLVSTAT-----FGACYFLNVPLYASNVFTFVATLRLVQDPI 581
+A Q R L VLV A GA + + A + FV +V I
Sbjct: 233 AARQ-RIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSI 291
Query: 582 RIIPDVIGVFIQANVAFSRIVNFLEA-PEL------QSMNIRQKGNIENVNRAISIKSAS 634
+ +V G +A A R++ L+A P++ +++ + +G I + +
Sbjct: 292 GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRG-------EIEFEQVN 344
Query: 635 FSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--- 691
F++ +P + ++L VRPG+ VA+ G G+GKSTL +L G I + G
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
Query: 692 ----------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD-LELLPY 740
+ A V Q + S+ ENI +G P + + E R + + + LP
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
G +T +GERGV LSGGQ+QRI +ARA+ +DA I LLD+ SA+DA + L + +
Sbjct: 465 GYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLM 523
Query: 801 SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
G+ L++ H++ + D +++M G I+ + +L+A + L
Sbjct: 524 KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-32
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 30/203 (14%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+SI + SFS+ E + ++N+SLE++ G+K+A+ G GSGKSTLL + G++ QG I
Sbjct: 1 LSINNVSFSYPEQE-QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 688 QVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
+ G ++ L SLI L PY +T +
Sbjct: 60 TLDGV-------------------------PVSDLEKALS--SLISVLNQRPYLFDTTLR 92
Query: 748 ER-GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
G SGG++QR+ LAR L QDA I LLD+P +D T L + + E L K ++
Sbjct: 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLI 151
Query: 807 LVTHQVDFLPAFDSVLLMSDGEI 829
+TH + + D +L + +G+I
Sbjct: 152 WITHHLTGIEHMDKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 628 ISIKSASFSWEESSSKPT-MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+ +++ S ++ T + +ISL V G+ VA+ G G GKSTLL I G T G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 687 IQVYGK--------TAYVSQTA----WIQTGSIRENILFGSPMDSHQYQETLERC-SLIK 733
+ V G+ YV Q W+ ++ +N+ G + E ER L++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
+ L + + + LSGG +QR+ LARAL D D+ LLD+PFSA+DA T L
Sbjct: 118 LVGLSGFENAY-PHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-Q 171
Query: 794 DYVMEALS--GKVVLLVTHQVD---FLPAFDSVLLMS 825
+ +++ GK VLLVTH +D FL D V+++S
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLA--DRVVVLS 206
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 71/231 (30%), Positives = 100/231 (43%), Gaps = 46/231 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQ 698
+I+L V G+ VAI G G GKSTLL I G T G + + G+ YV Q
Sbjct: 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79
Query: 699 TA----WIQTGSIRENILFG-----SPMDSHQYQ--ETLERCSLIKDLELLPYGDNTEIG 747
W+ ++ +N+ G + + E LE L + P+
Sbjct: 80 EDALLPWL---TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH------- 129
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVV 805
LSGG +QR+ +ARAL + LLD+PF A+DA T L D ++ K V
Sbjct: 130 ----QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL-QDELLRLWEETRKTV 184
Query: 806 LLVTHQVD---FLPAFDSVLLMSDG-----EILRAAPYHQLLASSKEFQEL 848
LLVTH VD +L D V+++S+ E L + EF EL
Sbjct: 185 LLVTHDVDEAVYLA--DRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLEL 233
|
Length = 248 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-30
Identities = 85/267 (31%), Positives = 129/267 (48%), Gaps = 25/267 (9%)
Query: 591 FIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNIS 650
F A A+ R+ L + + + +S+++ + KPT+R IS
Sbjct: 284 FSGARQAYKRLNELLANYPSRDPAMP----LPEPEGHLSVENVTIVPPGGK-KPTLRGIS 338
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV------------YGKT-AYVS 697
++ G+ +AI G GSGKSTL I+G P T G++++ +GK Y+
Sbjct: 339 FSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398
Query: 698 QTAWIQTGSIRENIL-FGSPMDSHQYQETLERCSLIKDLEL---LPYGDNTEIGERGVNL 753
Q + G++ ENI FG D ++ +E L EL LP G +T IG G L
Sbjct: 399 QDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD 813
SGGQ+QRI LARALY D + +LD+P S +D +L N G V+++TH+
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
Query: 814 FLPAFDSVLLMSDGEILRAAPYHQLLA 840
L D +L++ DG I R ++LA
Sbjct: 516 LLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 76/221 (34%), Positives = 110/221 (49%), Gaps = 41/221 (18%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688
++ + S+ P + ++S EV+PG+ +AI G G+GKSTLL AILG + T G+I+
Sbjct: 1 EVEDLTVSY---GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 689 VYGKT--------AYVSQTAWIQTG---SIRENIL--------FGSPMDSHQYQETLERC 729
V+GK YV Q I S+R+ +L + + E
Sbjct: 58 VFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE-- 115
Query: 730 SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
++ + L D IGE LSGGQ+QR+ LARAL QD D+ LLD+PF+ VD T
Sbjct: 116 -ALERVGLSELADRQ-IGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ- 168
Query: 790 SLFNDYVMEAL-----SGKVVLLVTHQVD-FLPAFDSVLLM 824
+ + E L G +L+VTH + L FD VLL+
Sbjct: 169 ----EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 17/219 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692
+ NISL ++PG+ V I G GSGKSTL I G + V G +
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 693 TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
V Q + SIR+NI P M + E + + LP G +T +GE+G
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTH 810
LSGGQ+QRI +ARAL + I + D+ SA+D + ++ + M + G+ V+++ H
Sbjct: 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--MHDICAGRTVIIIAH 195
Query: 811 QVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
++ + D +++M G I+ + +LLA + + L
Sbjct: 196 RLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-30
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 47/202 (23%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688
I++ SF + + + N+SL ++ G+ VA+ G GSGKSTLL AI G + T G I
Sbjct: 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 689 VYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
+ GK A + +R I + Q
Sbjct: 58 IDGKD-----IAKLPLEELRRRIGY-----VPQ--------------------------- 80
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLL 807
LSGGQ+QR+ LARAL + D+ LLD+P S +D + L + + E A G+ V++
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVII 135
Query: 808 VTHQVDFL-PAFDSVLLMSDGE 828
VTH + A D V+++ DG+
Sbjct: 136 VTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 5e-29
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 39/225 (17%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI- 687
+K+ SFS+ ++P + +ISL ++ G+ V I G GSGKSTLL + G + T G +
Sbjct: 1 ELKNLSFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 688 ------------QVYGKTAYVSQTAWIQ--TGSIRENILFG------SPMDSHQYQ-ETL 726
++ K V Q Q ++ E + FG + + E L
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 727 ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
E L + P+ LSGGQKQR+ +A L D DI LLD+P + +D
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 787 TASSLFNDYVMEAL--SGKVVLLVTHQVDFLPAF-DSVLLMSDGE 828
L +++ L GK +++VTH +D L D V+++ DG+
Sbjct: 169 GRRELLE--LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-28
Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 26/318 (8%)
Query: 552 FGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRI--VNFLEAPE 609
GA + L + TF A L P+ I ++ A VA +R+ V +++
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458
Query: 610 LQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGK 669
+ +++ + N+N I I S+S+ S + +ISL ++ K I G GSGK
Sbjct: 459 INK---KKRTELNNLNGDIVINDVSYSYGYGS--NILSDISLTIKMNSKTTIVGMSGSGK 513
Query: 670 STLLAAILGEVPHTQGTIQVYGKT-------------AYVSQTAWIQTGSIRENILFGSP 716
STL ++G G I + G + Y+ Q +I +GSI EN+L G+
Sbjct: 514 STLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK 573
Query: 717 MDSHQYQETLERCSLI---KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773
+ Q E C + D+E +P G TE+ E G ++SGGQKQRI LARAL D+ +
Sbjct: 574 ENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632
Query: 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833
+LD+ S +D T + N+ + L K ++ V H++ D ++++ G+I+
Sbjct: 633 LILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690
Query: 834 PYHQLLASSKEFQELVSA 851
+ +LL + + L+
Sbjct: 691 SHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 58/204 (28%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------- 693
++SL + G+ V I G G+GKSTLL + G + + G I + GK
Sbjct: 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKI 75
Query: 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN- 752
AYV Q LE L + +R N
Sbjct: 76 AYVPQA--------------------------LELLGL------------AHLADRPFNE 97
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKVVLLVT 809
LSGG++QR+ LARAL Q+ I LLD+P S +D L ++ L+ GK V++V
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE--LLRRLARERGKTVVMVL 155
Query: 810 HQVDFLPAF-DSVLLMSDGEILRA 832
H ++ + D V+L+ DG I+
Sbjct: 156 HDLNLAARYADRVILLKDGRIVAQ 179
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 3e-27
Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 20/273 (7%)
Query: 591 FIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNIS 650
F Q +A R+ + L +P + + AI+ ++ F + S + N++
Sbjct: 421 FQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIRFRYAPDSP-EVLSNLN 477
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ------- 703
L+++PG+ + I G GSGKSTL + G + V G ++ AW++
Sbjct: 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL 537
Query: 704 ------TGSIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGVNLSGG 756
+ SIR+NI +P ++ + + D + LP G NTE+GE+G NLSGG
Sbjct: 538 QENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597
Query: 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFL 815
Q+QRI +ARAL + I + D+ SA+D + + + + M + G+ V+++ H++ +
Sbjct: 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREICRGRTVIIIAHRLSTV 655
Query: 816 PAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
A D ++++ G+I + + +LLA + L
Sbjct: 656 RACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQG 685
I +K+ S ++ ++ +SL + G+ VAI G GSGKSTLL + G + P T G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSG 59
Query: 686 TIQVYGKTA-----------------YVSQT-AWIQTGSIRENILFGSPMDSHQYQETLE 727
++V G +V Q+ + + EN+ + +E E
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 728 RCSLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
R ELL + + LSGGQ+QR+ +ARAL D I L D+P +D+
Sbjct: 120 RA-----EELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 787 TASSLFNDYVMEAL------SGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
T VME L +G +++VTH + D ++ + DG+I
Sbjct: 175 TG-----KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 7e-27
Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 31/229 (13%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------- 691
K + +S EV PG+ + G G+GK+TLL + G + T G I V G
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKV 76
Query: 692 --KTAYVSQTA----WIQTGSIRENILFGSPMDSHQYQETLERC-SLIKDLELLPYGDNT 744
+ YV Q + ++REN+ F + + +E ER L++ L +
Sbjct: 77 RRRIGYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN-- 131
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--- 801
++ LSGG KQR+ +A AL D ++ +LD+P S +D + ++ ++ L+
Sbjct: 132 ---KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE--LLRELAKEG 186
Query: 802 GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
G +LL TH ++ D V++++DG+I+ +L +
Sbjct: 187 GVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
|
Length = 293 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 40/249 (16%)
Query: 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
R I ++ SF + K ++++SLE+ G++V + G GSGKSTLL + G + T
Sbjct: 1 LRMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 685 GTIQVYGKT--------------AYVSQTAWIQ--TGSIRENILFG---SPMDSHQYQ-- 723
G + V G V Q Q ++ + + FG + + +
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 724 --ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781
E LE L + L+ P+ NLSGGQKQR+ +A L +I LLD+P +
Sbjct: 119 VAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 782 AVDAHTASSLFNDYVME--ALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQL 838
+D L + + + GK +++VTH ++ + + D V+++ DG+IL ++
Sbjct: 168 GLDPKGRREL-LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
Query: 839 LASSKEFQE 847
++
Sbjct: 227 FNDAELLLA 235
|
Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 26/218 (11%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------- 693
KP ++ IS ++ G+ + I G GSGKSTL ++G P T G++++ G
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408
Query: 694 ----AYVSQTAWIQTGSIRENIL-FGSPMDSHQYQETLERCSLIKDLEL-LPYGDNTEIG 747
Y+ Q + G+I ENI FG D + E R + + +L L LP G +T IG
Sbjct: 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEA-ARLAGVHELILRLPQGYDTRIG 467
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-----SG 802
E G LSGGQ+QRI LARALY D + +LD+P S +D+ ++L A+ G
Sbjct: 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL-----AAAILAAKARG 522
Query: 803 KVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
V+++ H+ L + D +L++ DG I P ++LA
Sbjct: 523 GTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 56/270 (20%), Positives = 108/270 (40%), Gaps = 3/270 (1%)
Query: 920 FLFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLS 979
L + A+ ++G+ L S + N + + S + L ++ + +G + L L
Sbjct: 7 LLILAGATALVFPLLLGRFLD-SLIDGNGDERS-SLISLAILLIAVGVLQGLLLQGSFYL 64
Query: 980 SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVG 1039
LG R K LF LL + PMSF+D+ +G + SR+++D+S + + L
Sbjct: 65 GERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQ 124
Query: 1040 ATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLA 1099
+ V+ W++ V + ++ L I L ++L R + +
Sbjct: 125 SLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAE 184
Query: 1100 ESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF 1159
ES++G T++AF E+ + ++ + +S + A +
Sbjct: 185 ESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALW 244
Query: 1160 C-MVLLPPGTFTPGFIGMALSYGLSLNSSL 1188
L+ G + G + LS GL L+ L
Sbjct: 245 FGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 35/65 (53%), Positives = 49/65 (75%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G ++ ++ +RYRP+ P VLK IS + + G K+GIVGRTGSGK++L ALFRL+E + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1295 ILVDG 1299
IL+DG
Sbjct: 61 ILIDG 65
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 8e-26
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 32/275 (11%)
Query: 604 FLEAPELQSM--------NIRQKGN---IENVNRAISIKSASFSWEESSSKPTMRNISLE 652
F+ AP+L+ ++R + V A+ SFS++ +S+ + ++S E
Sbjct: 300 FMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYD--NSRQGVEDVSFE 357
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYG-------------KTAYVS 697
+PGQ VAI G G+GKSTL+ +L V P G I + G A V
Sbjct: 358 AKPGQTVAIVGPTGAGKSTLIN-LLQRVFDP-QSGRILIDGTDIRTVTRASLRRNIAVVF 415
Query: 698 QTAWIQTGSIRENILFGSPMDSH-QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756
Q A + SI +NI G P + + + ER +E P G +T +GERG LSGG
Sbjct: 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475
Query: 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP 816
++QR+ +ARAL +D I +LD+ SA+D T + + + E + G+ ++ H++ +
Sbjct: 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTVR 534
Query: 817 AFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSA 851
D +L+ +G ++ + + +L+A F L+ A
Sbjct: 535 NADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 21/213 (9%)
Query: 634 SFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK- 692
+F++ ++++S + PG+ A+ G GSGKST++A + G + + GK
Sbjct: 18 TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77
Query: 693 -TAY-----------VSQTAWIQTGSIRENILFG---SPMDS-HQYQETLERCSLIKDLE 736
+ Y V Q + S+++NI +G + + + S I +L
Sbjct: 78 ISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELA 137
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
TE+GE+G LSGGQKQR+ +ARAL ++ + +LD+ SA+DA + + +
Sbjct: 138 SGYD---TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV-QQAL 193
Query: 797 MEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+ + VL++ H++ + D +L++ G I
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 34/193 (17%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702
K + ++SL + G+ VA+ G GSGKSTLL I G G+I + G+
Sbjct: 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL---TDLED 69
Query: 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPY---GDNTEIGERGVNLSGGQKQ 759
+ +R I + +D L P+ +N +G LSGGQ+Q
Sbjct: 70 ELPPLRRRIGM-----------------VFQDFALFPHLTVLENIALG-----LSGGQQQ 107
Query: 760 RIQLARALYQDADIYLLDDPFSAVDAHTASS---LFNDYVMEALSGKVVLLVTHQVDFLP 816
R+ LARAL D D+ LLD+P SA+D T L ++A G V+LVTH +D
Sbjct: 108 RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS--LQAQLGITVVLVTHDLDEAA 165
Query: 817 AF-DSVLLMSDGE 828
D V+++ DG+
Sbjct: 166 RLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------- 692
S + ++SL V PG+ +A+ G G GK+TLL I G G I + G+
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71
Query: 693 --TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
V Q A ++ ENI FG + E R + LEL+ + R
Sbjct: 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVREL--LELV---GLEGLLNR 126
Query: 750 GVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVL 806
+ LSGGQ+QR+ LARAL ++ + LLD+P SA+DA L + + E G +
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL-REELKELQRELGITTI 185
Query: 807 LVTH-QVDFLPAFDSVLLMSDGEIL 830
VTH Q + L D + +M++G I+
Sbjct: 186 YVTHDQEEALALADRIAVMNEGRIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 23/214 (10%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688
I++ SFS+++ + + ++SL++ G+ +A+ G+ G+GK+TL + G + + G+I
Sbjct: 1 RIENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 689 VYGK----------TAYVSQTAWIQ--TGSIRENILFGSPMDSHQYQETLERCSLIKDLE 736
+ GK YV Q Q T S+RE +L G + E E +++KDL+
Sbjct: 59 LNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK-ELDAGNEQAE--TVLKDLD 115
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
L + ++LSGGQKQR+ +A AL D+ + D+P S +D +
Sbjct: 116 LYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 797 MEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
A GK V+++TH +FL D VLL+++G I
Sbjct: 171 ELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-25
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 23/240 (9%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQG 685
AI + +F + + ++SL++ PG+ VAI G GSGKSTLL +LG E P + G
Sbjct: 451 AIEVDRVTFRYRPDGP-LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES-G 508
Query: 686 TIQVYGKT-------------AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLI 732
++ G+ V Q + +GSI ENI G+P+ + E L
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLA 568
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
+D+ +P G +T I E G LSGGQ+QR+ +ARAL + I L D+ SA+D T +
Sbjct: 569 EDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI-- 626
Query: 793 NDYVMEALSGKVV--LLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850
V E+L V +++ H++ + D + ++ G +++ Y +L+A F +L
Sbjct: 627 ---VSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 57/242 (23%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I +K+ S ++ +++++LE+ G+ VAI G G+GKSTLL ++ G V T G
Sbjct: 3 MIEVKNLSKTY--PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 687 IQVYG----------------KTAYVSQT-AWIQTGSIRENILFG--------------- 714
I G + Q + S+ EN+L G
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 715 SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774
S D Q + LER ++ +R LSGGQ+QR+ +ARAL Q I
Sbjct: 121 SKEDKAQALDALERVGILDKAY-----------QRASTLSGGQQQRVAIARALVQQPKII 169
Query: 775 LLDDPFSAVDAHTASSLFNDYVMEAL------SGKVVLLVTHQVDF-LPAFDSVLLMSDG 827
L D+P +++D +A VM+ L G V++ HQVD D ++ + G
Sbjct: 170 LADEPVASLDPESAKK-----VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224
Query: 828 EI 829
I
Sbjct: 225 RI 226
|
Length = 258 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 43/241 (17%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+ +++ SF + KP + ++S + G+ I G GSGKSTLL + G + G
Sbjct: 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 687 IQVYGKT-------------AYVSQTAWIQTG-SIRENILFGSPMDSHQYQETLERCS-- 730
+ + GK AYV Q+ G ++ E +L G + + R S
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR----YPHLGLFGRPSKE 114
Query: 731 ----LIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ + LELL + +R V+ LSGG++QR+ +ARAL Q+ I LLD+P S +D
Sbjct: 115 DEEIVEEALELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171
Query: 786 HTASSLFNDYVMEAL------SGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQL 838
V+E L G V++V H ++ + D ++L+ DG+I+ ++
Sbjct: 172 AHQIE-----VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226
Query: 839 L 839
L
Sbjct: 227 L 227
|
Length = 258 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-25
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 55/215 (25%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +++ SF + + P +RN+S + PG+ +AI G GSGKSTL ILG + T G +
Sbjct: 1 LEVENVSFRYPGAE-PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 688 QV------------YGKT-AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD 734
++ G Y+ Q + +GSI ENI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
LSGGQ+QR+ LARALY + I +LD+P S +D +L
Sbjct: 97 ------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 795 YVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+G +++ H+ + L + D +L++ DG +
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 43/223 (19%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------- 691
+ K ++++SL + PG+ VA+ G G+GKSTLL + G V T G++ + G
Sbjct: 11 PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKG 70
Query: 692 --------KTAYVSQT-AWIQTGSIRENILFGSPMDSHQYQ---------ETLERCSLIK 733
+ + Q I+ S+ EN+L G ++ E + ++
Sbjct: 71 KALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALE 130
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
+ LL +R LSGGQ+QR+ +ARAL Q + L D+P +++D ++
Sbjct: 131 RVGLLDK-----AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ--- 182
Query: 794 DYVMEAL------SGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
VM+ L G V++ HQVD + D ++ + DG I
Sbjct: 183 --VMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 42/212 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKT----------- 693
++++LE+ G+ VAI G GSGKSTLL +LG + P T G + + GK
Sbjct: 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKP-TSGEVLINGKDLTKLSEKELAK 79
Query: 694 ------AYVSQT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDN 743
+V Q + ++ EN+ + + + + E L++ L L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAE--ELLEVLGLEDRLLK 137
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-- 801
+ E LSGGQ+QR+ +ARAL + I L D+P +D+ TA V+E L
Sbjct: 138 KKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA-----KEVLELLREL 188
Query: 802 ----GKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
GK +++VTH + D V+ + DG+I
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-24
Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 21/244 (8%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
N+ I + SFS+ P ++ ++ + PG+ VA+ G GSGKST+ A +
Sbjct: 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532
Query: 682 HTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFG---SPMDSHQYQET 725
T G + + G + A V Q + +GS+RENI +G +P + +
Sbjct: 533 PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDE--EIMAA 590
Query: 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ + + P G +TE+GE+G LSGGQKQRI +ARAL + + +LD+ SA+DA
Sbjct: 591 AKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA 650
Query: 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845
L + + + VLL+ H++ + D +L++ G ++ + QL+ +
Sbjct: 651 ECEQLLQES---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCY 707
Query: 846 QELV 849
+ LV
Sbjct: 708 KHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--- 702
++ I L V+ G+ V I G GSGKSTLL I GTI + G +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 703 -QTG------------SIRENILFGSP-----MDSHQYQETLERCSLIKDLELLPYGDNT 744
+ G ++ ENI P M + +E L++ + L D
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERALE--LLEKVGLADKAD-- 130
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SG 802
LSGGQ+QR+ +ARAL + + L D+P SA+D + + VM+ L G
Sbjct: 131 ---AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD--VMKDLAEEG 185
Query: 803 KVVLLVTHQVDF-LPAFDSVLLMSDGEI 829
+++VTH++ F D V+ M DG I
Sbjct: 186 MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 47/248 (18%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ + S+ + ++ + L+VR G+ +AI G GSGKSTLL I+G + G +
Sbjct: 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 688 QVYGK-TAYVSQTAWI----------QTG------SIRENILFGSPMDSH---------- 720
+ G+ + +S+ Q+G ++ EN+ F P+ H
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIRE 115
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
E LE L +L P LSGG K+R+ LARAL D ++ L D+P
Sbjct: 116 IVLEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 781 SAVDAHTASSLFNDYVME--ALSGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQ 837
+ +D AS + +D + G ++VTH +D D + ++ DG+I+ +
Sbjct: 165 AGLDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223
Query: 838 LLASSKEF 845
L AS
Sbjct: 224 LRASDDPL 231
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 36/242 (14%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ S + +K + +++L + G+ + + G GSGK+T L I + T G I
Sbjct: 2 IEFENVSKRY---GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 688 QVYGKT-------------AYVSQTAWIQTG-----SIRENILFGSPMDSHQYQETLERC 729
+ G+ YV Q Q G ++ ENI + + +R
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKR- 113
Query: 730 SLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
+L L D +E +R + LSGGQ+QR+ +ARAL D I L+D+PF A+D T
Sbjct: 114 --ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171
Query: 789 SSLFNDYV-MEALSGKVVLLVTHQVDFLPAF---DSVLLMSDGEILRAAPYHQLLASSK- 843
L + ++ GK ++ VTH +D A D + +M GEI++ ++LA+
Sbjct: 172 KQLQEEIKELQKELGKTIVFVTHDID--EALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
Query: 844 EF 845
+F
Sbjct: 230 DF 231
|
Length = 309 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 34/260 (13%)
Query: 599 SRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQK 658
S +E PE + R IE I +K+ S K + ++S +V PG+
Sbjct: 5 SESSRGVELPEPKEPKKRHP--IEINEPLIELKNVSVRRNG---KKILGDLSWQVNPGEH 59
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------TAYVS------- 697
AI G G+GK+TLL+ + GE P + G + + G+ VS
Sbjct: 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119
Query: 698 QTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSGG 756
+ ++R+ +L G YQE L L LL + +R +LS G
Sbjct: 120 RVRE----TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQG 175
Query: 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN--DYVMEALSGKVVLLVTHQVDF 814
+++R+ +ARAL +D ++ +LD+P +D L N + + + +L VTH +
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE 235
Query: 815 LPA-FDSVLLMSDGEILRAA 833
+P F LL+ +GE++
Sbjct: 236 IPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-23
Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 31/248 (12%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
+ N+++ + F E + ++S ++R G+ + + GE GSGKSTL + G +
Sbjct: 283 VRNLSKRYGSRKGLFVRE-RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341
Query: 681 PHTQGTIQVYGKTAYVSQTAW------IQTG------------SIRENILFGSPMDSHQY 722
P + G+I G+ ++ IQ ++ + + P+ H
Sbjct: 342 PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL--AEPLRIHGG 399
Query: 723 QETLERCSLIKD-LELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPF 780
ER + + + LEL+ G E +R + LSGGQ+QR+ +ARAL + + +LD+P
Sbjct: 400 GSGAERRARVAELLELV--GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV 457
Query: 781 SAVDAHTASSLFN---DYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYH 836
SA+D + + N D E G L ++H + + D V +M DG I+ P
Sbjct: 458 SALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515
Query: 837 QLLASSKE 844
++ + +
Sbjct: 516 KVFENPQH 523
|
Length = 539 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-23
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 636 SWEESSSKPTM--------RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQ 684
W + K ++SL V GQ +AI G GSGK+TLL AI G V T
Sbjct: 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 685 GTIQVYGK----------TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIK 733
G I G+ AYV Q + ++RE + + + + + R ++
Sbjct: 65 GQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE 124
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
D+ L G +SGG+++R+ +A L D + +LD+P S +D+ TA +L +
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184
Query: 794 DYVMEALSGKVVLLVTHQ--VDFLPAFDSVLLMSDGEIL 830
A ++V+L HQ D FD +LL+S GEI+
Sbjct: 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 6e-23
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 36/188 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS 706
+ISL V G+ + G G+GK+TL+ ILG + G I+V GK +
Sbjct: 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI------KKEPEE 70
Query: 707 IRENI--LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764
++ I L P Y + T + LSGG KQR+ LA
Sbjct: 71 VKRRIGYLPEEPS---------------------LYENLT--VRENLKLSGGMKQRLALA 107
Query: 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLPA-FDSV 821
+AL D ++ +LD+P S +D + + ++ L GK +LL +H ++ D V
Sbjct: 108 QALLHDPELLILDEPTSGLDPESRREFWE--LLRELKKEGKTILLSSHILEEAERLCDRV 165
Query: 822 LLMSDGEI 829
++++G I
Sbjct: 166 AILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 9e-23
Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 51/263 (19%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ + + K + N++LE+ G+ + + G GSGK+T + I + T G I
Sbjct: 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 688 QVYGKT-------------AYVSQTAWIQTG-----SIRENI-----LFGSPMDSHQYQE 724
+ G+ YV Q Q G ++ ENI L P + +E
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWP--KEKIRE 112
Query: 725 TLERCSLIKDLELLPYGDNTEIGER-GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783
+ L+ + L P E +R LSGGQ+QR+ +ARAL D + L+D+PF A+
Sbjct: 113 RADE--LLALVGLDP----AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 784 DAHTASSLFNDYV-MEALSGKVVLLVTHQVDFLPAF---DSVLLMSDGEILR-AAPYHQL 838
D T L ++ ++ GK ++ VTH +D AF D + +M +GEI++ P L
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDID--EAFRLADRIAIMKNGEIVQVGTPDEIL 224
Query: 839 LASSKEFQELVSAHKETAGSERL 861
+ + +F E G++RL
Sbjct: 225 RSPANDFVA------EFVGADRL 241
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 46/249 (18%), Positives = 98/249 (39%), Gaps = 7/249 (2%)
Query: 312 IFMSGFFALIKVLTLSAGPLFLNAFI-LVAESKAGFKYEGYLLAITLFLAKILESLSQRQ 370
+ ++ ++ T PL L F+ + + + LAI L +L+ L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 371 RYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQ 430
++ +G ++R L A+ R+ L L + +S GE+ + +T D +I +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 431 IWTTSVQLCIALIILFHAVG-LATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERL 489
++ S+ + I+ G T+ L ++ + +L + LAK K K A +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 490 KACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKA-YNGFLFWSSPVLVS 548
E+ ++ +K + E + + K ++KA G F + ++
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKA----GIKKAITAGLSFGITQLISY 236
Query: 549 TATFGACYF 557
+ A +F
Sbjct: 237 LSYALALWF 245
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 2e-22
Identities = 74/249 (29%), Positives = 123/249 (49%), Gaps = 44/249 (17%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
+ I ++ + S+ + + + + L+V G+ +AI G GSGKSTLL ILG +
Sbjct: 3 ASPEPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 682 HTQGTIQVYGK-TAYVSQTAWI----------QTG------SIRENILFGSPMDSHQYQE 724
+G I + G+ +S+ Q G ++ EN+ F P+ H
Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHT--- 114
Query: 725 TLERCSLIKDLELLPYGDNTE-IGERGVN-------LSGGQKQRIQLARALYQDADIYLL 776
L SLI++L L+ E +G RG LSGG ++R+ LARA+ D ++ L
Sbjct: 115 KLPE-SLIRELVLM----KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL 169
Query: 777 DDPFSAVDAHTASSLFNDYVME---ALSGKVVLLVTHQVD-FLPAFDSVLLMSDGEILRA 832
D+P S +D +A + ++ + E AL G V++VTH +D L D V +++DG+++
Sbjct: 170 DEPTSGLDPISA-GVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 833 APYHQLLAS 841
+LLAS
Sbjct: 228 GTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 2e-22
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 57/192 (29%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS 706
+SL VR G+ A+ GE G+GKSTL+ + G G I V GK
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE------------- 63
Query: 707 IRENILFGSPMDSHQ------YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760
+ F SP D+ + YQ LS G++Q
Sbjct: 64 ----VSFASPRDARRAGIAMVYQ-----------------------------LSVGERQM 90
Query: 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPAF 818
+++ARAL ++A + +LD+P +A+ LF V+ L G V+ ++H++D +
Sbjct: 91 VEIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEI 148
Query: 819 -DSVLLMSDGEI 829
D V ++ DG +
Sbjct: 149 ADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 5e-22
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 15/229 (6%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691
E++ KP ++++ ++PGQKV ICG GSGKS+L A V G I + G
Sbjct: 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP 89
Query: 692 ------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
+ + + Q + +GSIR N+ + E LE L ++ LP G +
Sbjct: 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAV 149
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVV 805
+ E G N S GQ+Q LARA + + I ++D+ +++D T ++ VM A + + V
Sbjct: 150 VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFADRTV 208
Query: 806 LLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE-FQELVSAHK 853
+ + H+V + D VL++S G ++ LLA F LV K
Sbjct: 209 VTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 49/226 (21%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------- 691
+ K ++NI+L + PG+ VAI G G+GKSTLL I V + G+I + G
Sbjct: 12 PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRG 71
Query: 692 --------KTAYVSQT-AWIQTGSIRENILFG------------SPMDSHQYQETLERCS 730
+ + Q I+ ++ EN+L G + L S
Sbjct: 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERAL---S 128
Query: 731 LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASS 790
++ + L +R LSGGQ+QR+ +ARAL Q D+ L D+P +++D T+
Sbjct: 129 ALERVGLADKAY-----QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 791 LFNDYVMEALS------GKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
VM+ L G V++ HQVD + D ++ + GEI
Sbjct: 184 -----VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 6e-22
Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 23/238 (9%)
Query: 626 RAISIKSASFSWEE-SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+S+++ S + + + N+SLE+ G+ + I GE GSGKSTL + G +
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 685 GTIQVYGK--------TAYVSQTAWIQ---TGSI--RENI--LFGSPMDSHQYQETLERC 729
G+I + GK A+ + S+ R + + P+ H ++ +R
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 730 S-LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
+ L+ + L + + R LSGGQ+QRI +ARAL + + +LD+P SA+D
Sbjct: 122 AELLDQVGL----PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 789 SSLFNDYVMEALS-GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKE 844
+ + N + G L ++H + + D + +M +G+I+ P +LL+
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 6e-22
Identities = 63/226 (27%), Positives = 96/226 (42%), Gaps = 41/226 (18%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-KTAYVSQTAWI--Q 703
+ ISL V G+ V I G GSGKSTLL + G G+I V G + +
Sbjct: 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78
Query: 704 TG------------SIRENILFGSP-----MDSHQYQET----LERCSLIKDLELLPYGD 742
G ++ EN+ P + + +E LE+ L + P
Sbjct: 79 VGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAYPA-- 135
Query: 743 NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-- 800
LSGGQ+QR+ +ARAL D + L D+P SA+D + + VM+ L
Sbjct: 136 ---------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAE 184
Query: 801 SGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEF 845
G +++VTH++ F D V+ M G+I+ P + + K
Sbjct: 185 EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230
|
Length = 240 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 6e-22
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 40/232 (17%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
A+ I++ S S+ + +ISL+++ G+ V + G G GK+TLL I G + G
Sbjct: 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
Query: 687 IQVYGK-----------TAYVSQT-AWIQTGSIRENILFG----SPMDSHQYQETLERCS 730
I + G+ V Q+ A ++ EN+ FG + + + +E
Sbjct: 62 ILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE-- 119
Query: 731 LIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
++ + L + D R + LSGGQ+QR+ LARAL + + LLD+P SA+DA
Sbjct: 120 ALELVGLEGFAD------RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 790 SLFNDYVMEAL------SGKVVLLVTH-QVDFLPAFDSVLLMSDGEILRAAP 834
+ + L G + VTH Q + L D + +M+DG I +
Sbjct: 174 QM-----RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 7e-22
Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 1231 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290
WP G++++ +L +RY PD P VLK +S + G KIGIVGRTG+GK+TL ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1291 ARGKILVDGK 1300
GKI +DG
Sbjct: 61 EEGKIEIDGI 70
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-21
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 24/218 (11%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------ 693
+ + NISL VR G+ +AI G G GKSTLL + + T GT+ G+
Sbjct: 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP 72
Query: 694 -------AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
+Y +QT + ++ +N++F + + + L+ L ++ +
Sbjct: 73 EAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAAL-DLLARFAL----PDSIL 127
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN---DYVMEALSGK 803
+ LSGG+KQRI L R L I LLD+ SA+D ++ YV E
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE--QNV 185
Query: 804 VVLLVTHQVD-FLPAFDSVLLMSDGEILRAAPYHQLLA 840
VL +TH D + D V+ + G Q LA
Sbjct: 186 AVLWITHDKDQAIRHADKVITLQPGHAGEMQEARQELA 223
|
Length = 223 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 77/265 (29%), Positives = 128/265 (48%), Gaps = 26/265 (9%)
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGNIENV--NRAISIKSASFSWEESSSKPTMRNIS 650
QA VA R+ ++ P +Q GN + + I I + SF++ + ++NI+
Sbjct: 310 QAVVAGERVFELMDGPR------QQYGNDDRPLQSGRIDIDNVSFAYRDD--NLVLQNIN 361
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVS 697
L V VA+ G GSGKSTL + ++G P T+G I++ G+ A V
Sbjct: 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421
Query: 698 QTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757
Q + + N+ G + Q + LE L + LP G T +GE+G NLS GQ
Sbjct: 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481
Query: 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV-THQVDFLP 816
KQ + LAR L Q I +LD+ + +D+ T ++ + A+ L+V H++ +
Sbjct: 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAI--QQALAAVREHTTLVVIAHRLSTIV 539
Query: 817 AFDSVLLMSDGEILRAAPYHQLLAS 841
D++L++ G+ + + QLLA+
Sbjct: 540 EADTILVLHRGQAVEQGTHQQLLAA 564
|
Length = 592 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 4e-21
Identities = 101/376 (26%), Positives = 156/376 (41%), Gaps = 34/376 (9%)
Query: 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILS 1017
L V+ + FVST +L+S + VV IR ++ L P+SF+D P G +LS
Sbjct: 63 LAVLRGICSFVST-YLLSWVSNKVVRDIRV------RMFEKLLGLPVSFFDRQPTGTLLS 115
Query: 1018 RVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVI-FLAIRLQ 1073
R++ D V + I V T VL +WQ ++ V +PV+ L R+
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175
Query: 1074 RYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLIDTNAS 1130
+ +KE+ G V E++ G ++ F E R F + A
Sbjct: 176 KRLRRISKEIQNSMGQ----VTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAM 231
Query: 1131 PFFHSFAANEWLIQRLETLS-ATVISSAAF--CMVLLPPGTFTPGFIGMALSYGLSLNSS 1187
+ + + + Q + +L+ A V+ A F L G FT M L S
Sbjct: 232 KMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR-PLKSL 290
Query: 1188 LVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR 1247
++ Q LA + E L + PE R G V+ ++ RY
Sbjct: 291 TNVNAPMQRGLA----AAESLFTLL---DSPPEKDTGTRAIER--ARGDVEFRNVTFRYP 341
Query: 1248 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG-KLAEYDE 1306
L IS E G + +VGR+GSGK+TL + R EP G+IL+DG LA+Y
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT- 400
Query: 1307 PMELMKREGSLFGQLV 1322
+ ++R+ +L Q V
Sbjct: 401 -LASLRRQVALVSQDV 415
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 8e-21
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 24/204 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA----------- 694
+ +++LEV G VA+ G GSGKSTLL I G G I++ G+ A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 695 YVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN- 752
+V Q A + ++R+NI FG + H + R ELL +G+R N
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVE-----ELLELVQLEGLGDRYPNQ 130
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLLVT 809
LSGGQ+QR+ LARAL + + LLD+PF A+DA L + + L +V + VT
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS--WLRKLHDEVHVTTVFVT 188
Query: 810 H-QVDFLPAFDSVLLMSDGEILRA 832
H Q + + D +++MS+G+I +
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQI 212
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 8e-21
Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 51/227 (22%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTA----- 694
+ + +ISL+++ G+ VA+ G G+GKSTLL I G E P G I++ G+
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSN 71
Query: 695 ---------YVSQT-AWIQTGSIRENILFG---------SPMDSHQYQETLERCSLIKDL 735
+V Q A ++ +NI FG + +E L L
Sbjct: 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL---- 127
Query: 736 ELLPYGDNTEIGER-GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL--- 791
+ +R LSGGQ+QR+ LARAL + + LLD+PF A+DA L
Sbjct: 128 --------EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 792 ---FNDYVMEALSGKVVLLVTH-QVDFLPAFDSVLLMSDGEILRAAP 834
+D + G + VTH Q + L D V++++ G I + P
Sbjct: 180 LRKLHDRL-----GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 1e-20
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 19/248 (7%)
Query: 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+ NV A+ + +F + ++S + ++S E + GQ VAI G G+GK+TL+ +
Sbjct: 326 PELPNVKGAVEFRHITFEF--ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR 383
Query: 679 EVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDS-HQYQE 724
T G I + G A V Q A + SIRENI G + + E
Sbjct: 384 VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYE 443
Query: 725 TLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
+ + + G +T +GERG LSGG++QR+ +ARA+ ++A I +LD+ SA+D
Sbjct: 444 AAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
Query: 785 AHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
T + + N ++AL + ++ H++ + D VL + G ++ + +L+
Sbjct: 504 VETEARVKN--AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDG 561
Query: 844 EFQELVSA 851
F +L+
Sbjct: 562 RFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----KTAYVSQTA 700
+R++S E G+ + GE G+GK+TLL I + G + + G ++V +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 701 WIQTG--------SIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
+ G + REN+ + + + + + + L K L+LL Y D R
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAE--LSKRLQLLEYLD-----RR 130
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLV 808
S G KQ++ +ARAL D I +LD+P S +D F+D++ + G+ V+
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQLKNEGRAVIFS 189
Query: 809 THQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS 841
+H + + A D V+++ GE++ L A
Sbjct: 190 SHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-20
Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 33/243 (13%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
IE I ++ +F++ P +RNI+ ++ G+ VA+ G GSGKST+ +
Sbjct: 335 IERAKGDIEFRNVTFTYPGKE-VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393
Query: 681 PHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLE 727
+G I + G + A VSQ + +I NI + E
Sbjct: 394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR-------TEQYS 446
Query: 728 RCSLIKDLEL---------LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
R + + + + G +T IGE GV LSGGQ+QRI +ARAL +D+ I +LD+
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 779 PFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837
SA+D T S ++ L + L++ H++ + D +L++ DGEI+ + +
Sbjct: 507 ATSALD--TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564
Query: 838 LLA 840
LLA
Sbjct: 565 LLA 567
|
Length = 582 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 3e-20
Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 69/366 (18%)
Query: 967 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSS----- 1021
+ F +++SL+ + L R SL + + + L R P+SF+ G + SR
Sbjct: 187 VGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMGISQIR 246
Query: 1022 -DLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVI--------FLAIRL 1072
LS L S IFA+ NLG++ +W++ V++ + L +
Sbjct: 247 RILSGSTLTTLLSGIFAL-------LNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQ 299
Query: 1073 QRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPF 1132
R + L+ L+G L + I G +R E+R FA+ L
Sbjct: 300 VRK----ERRLLELSGKISGLTV----QLINGISKLRVAGAENRAFARWAKL-------- 343
Query: 1133 FHSFAANEWL---IQRLETLSAT------VISSA---AFCMVLLPPGTFTPG-FIGMALS 1179
F+ L QR+E L V++SA A + LL + G F+ +
Sbjct: 344 ---FSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTA 400
Query: 1180 YGLSLNSSLVMSIQNQCTLANYIISV-ERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVD 1238
+G + V + N +I + ER + E V++ + P + G ++
Sbjct: 401 FGSFSGA--VTQLSNTLISILAVIPLWERAKPILEALPE----VDEAKTDPG-KLSGAIE 453
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI----EPARGK 1294
+ + RYRPD PL+L +S E G + IVG +GSGK+T L RL+ P G
Sbjct: 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKST----LLRLLLGFETPESGS 509
Query: 1295 ILVDGK 1300
+ DG+
Sbjct: 510 VFYDGQ 515
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-20
Identities = 51/194 (26%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P ++N+S +V+ G+K+ I G G+GKSTL+ A+ + +G I++ G + I
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI-----DISTIP 76
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE--------IGERGVNLSG 755
+R ++ P D + T+ L P+ + ++ + E G+NLS
Sbjct: 77 LEDLRSSLTI-IPQDPTLFSGTIR-------SNLDPFDEYSDEEIYGALRVSEGGLNLSQ 128
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815
GQ+Q + LARAL + + +LD+ +++D T +L + E + +L + H++ +
Sbjct: 129 GQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIAHRLRTI 187
Query: 816 PAFDSVLLMSDGEI 829
+D +L+M GE+
Sbjct: 188 IDYDKILVMDAGEV 201
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-20
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 32/201 (15%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------A 694
KP + +I+L + G+ + + G G GK+TLL I G VP+ G+I + GK
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERG 73
Query: 695 YVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-N 752
V Q + ++++N+ FG + + + LE ++L +R +
Sbjct: 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA-----HQMLKKVGLEGAEKRYIWQ 128
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-------SGKVV 805
LSGGQ+QR+ +ARAL + + LLD+PF A+DA T M+ L +GK V
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ------MQTLLLKLWQETGKQV 182
Query: 806 LLVTHQVD---FLPAFDSVLL 823
LL+TH ++ F+ A + VLL
Sbjct: 183 LLITHDIEEAVFM-ATELVLL 202
|
Length = 255 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 32/222 (14%)
Query: 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691
S S+ E + + ++SL + G+ V + G G GK+TLL I G V ++G+IQ+ G
Sbjct: 10 SLSY---EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 692 KT--------AYVSQT----AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLP 739
+ V Q W+ ++ +N+ FG + + + E + L L+
Sbjct: 67 RRIEGPGAERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAH--QMLALVG 121
Query: 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA 799
+ LSGG +QR+ +ARAL + + LLD+PF A+DA T + + +++
Sbjct: 122 LEGAEH--KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDL 178
Query: 800 --LSGKVVLLVTHQVD---FLPAFDSVLLMS--DGEILRAAP 834
+GK VLL+TH ++ FL ++++S G ++ P
Sbjct: 179 WQETGKQVLLITHDIEEALFLA--TRLVVLSPGPGRVVERLP 218
|
Length = 259 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-19
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 27/227 (11%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------- 693
P + N SL ++PGQ+VA+ G GSGKST+ + G G I G
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551
Query: 694 ----AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERC---SLIKDLEL-LPYGDNTE 745
A V Q ++ G++R+N+ + D L R + I D+ P G + E
Sbjct: 552 ANSVAMVDQDIFLFEGTVRDNL---TLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAE 608
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GK 803
+ E G NLSGGQ+QR+++ARAL ++ I +LD+ SA+D T + + L G
Sbjct: 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI-----IDDNLRRRGC 663
Query: 804 VVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850
++V H++ + D ++++ G++++ + +L A + L+
Sbjct: 664 TCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+ +K+ S+ S +++++L++ G+ V + G G GKSTLL I G T G
Sbjct: 3 ELELKNVRKSF---GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 687 IQVYGK-----------TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERC-SLIK 733
I + G+ A V Q A ++ ENI FG + E +R + K
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
L L + + + LSGGQ+QR+ LARAL + ++LLD+P S +DA +
Sbjct: 120 LLGLEHLLNR-----KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM-- 172
Query: 794 DYVME-----ALSGKVVLLVTH-QVDFLPAFDSVLLMSDGEI 829
E G + VTH QV+ + D +++M+DG I
Sbjct: 173 --RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
|
Length = 338 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 68/240 (28%), Positives = 101/240 (42%), Gaps = 47/240 (19%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQG 685
+++ FS+ MR L V G+ VAI G G+GKSTLL I G E P G
Sbjct: 1 MLALDDVRFSYGHL----PMR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASG 54
Query: 686 TIQVYGKTAYVSQTAWIQTG--------------SIRENILFG-SP------MDSHQYQE 724
I + G + + + ++ +NI G SP + +
Sbjct: 55 EILINGVD--HTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEA 112
Query: 725 TLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
+ L L+ LP GE LSGGQ+QR+ LAR L ++ I LLD+PFSA+D
Sbjct: 113 AAAQVGLAGFLKRLP-------GE----LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Query: 785 A---HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLA 840
+L + E +L+VTH + D V+ + +G I +LL+
Sbjct: 162 PALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+K + + + +++IS E+ G++V I G G+GKSTLL I G T G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 688 QVYGKTAYV---------SQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDL-EL 737
+V GK A + T RENI + +E E+ I + EL
Sbjct: 85 KVTGKVAPLIELGAGFDPELTG-------RENIYLRGLILGLTRKEIDEKVDEIIEFAEL 137
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA---HTASSLFND 794
+ D + S G R+ + A + + DI LLD+ + DA N+
Sbjct: 138 GDFID-QPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 795 YVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
V K ++LV+H + + + D + + G+I
Sbjct: 193 LV---EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225
|
Length = 249 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 3e-19
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 38/290 (13%)
Query: 638 EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------ 691
+++ K + + L + G+ I G GSGKST + + + T G I + G
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 692 -----------KTAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLP 739
K V Q A +I +N G + QE E+ LELL
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA-----LELLK 115
Query: 740 YGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-M 797
E R + LSGG +QR+ LARAL + DI L+D+ FSA+D S+ ++ +
Sbjct: 116 LVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175
Query: 798 EALSGKVVLLVTHQVD-FLPAFDSVLLMSDGEILR-AAPYHQLLASSKEFQELVSAHKET 855
+A K ++ +TH +D + D +++M GEI++ P L + E+ E E
Sbjct: 176 QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE------EF 229
Query: 856 AGSERLAEVTPSQK--SGMPAKEIKKGHVEKQFEVSKGDQLIKQEERETG 903
G L++V +++ M I K QL++ E ++
Sbjct: 230 IGKVDLSQVFDAERIAQRMNTGPITK---TADKGPRSALQLMRDERVDSL 276
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-19
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 42/212 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----TAYVSQTAW 701
+SL VRPG+ A+ GE G+GKSTL+ + G P G I + GK + + A
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84
Query: 702 IQTG----------SIRENILFG-------SPMDS----HQYQETLERCSLIKDLELLPY 740
I T S+ ENI G +D + +E L R L D +
Sbjct: 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPD---- 140
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
T +G +LS Q+Q +++ARAL DA + +LD+P +A+ LF+ ++ L
Sbjct: 141 ---TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIRRL 191
Query: 801 --SGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
G ++ ++H++D + D + ++ DG +
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 8e-19
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 30/227 (13%)
Query: 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
ISI++ + + S K + +I+LE+ PG+ V + G GSGK+TLL I G +G
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60
Query: 686 TIQVYGKTAY-VSQTAWIQTGSIRENI--------LFGS---------PMDSHQYQETLE 727
+++V G+ Y S+ +Q +R NI L G ++ E
Sbjct: 61 SLKVLGQELYGASEKELVQ---LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE 117
Query: 728 RCSL-IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
LE + GD+ + NLSGGQKQR+ +ARAL + L D+P +A+D+
Sbjct: 118 ARERARAMLEAVGLGDH--LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK 175
Query: 787 TASSLFNDYVMEALS---GKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830
+ + +M+ L+ G +L+VTH L D ++ M DG++L
Sbjct: 176 SGRDVVE--LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 58/206 (28%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691
I ++ + I G G+GKSTLL I G GTI + G
Sbjct: 16 KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 692 -KTAYVSQTAWIQTG-SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
K V Q + ++REN+ FG ++ ELL + R
Sbjct: 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-------ELLDLLGLDHLLNR 127
Query: 750 GV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVL 806
LSGG+KQR+ LARAL ++ LLD+PFSA+D L + + V+
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP-ELKQIKKNLNIPVI 186
Query: 807 LVTHQVD--FLPAFDSVLLMSDGEIL 830
VTH + A D +++M DG +
Sbjct: 187 FVTHDLSEAEYLA-DRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 36/237 (15%)
Query: 622 ENVNRAISIKSASFSWEE----SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
+N +A + + S EE + + ++SL+VR G+ I G GSGKSTLL I
Sbjct: 12 KNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71
Query: 678 GEVPHTQGTIQVYG-----------------KTAYVSQT-AWIQTGSIRENILFGSPMDS 719
+ T G + + G K + V Q+ A + ++ EN+ FG +
Sbjct: 72 RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 131
Query: 720 HQYQETLERCSLIKDLELLPYGD--NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777
E ER + LEL+ + E LSGG +QR+ LARAL D DI L+D
Sbjct: 132 VPRAEREERA--AEALELVGLEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILLMD 185
Query: 778 DPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTHQVDFLPAF---DSVLLMSDGEIL 830
+ FSA+D + ++ + ++A K ++ +TH D A D + +M DG ++
Sbjct: 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITH--DLDEALRLGDRIAIMKDGRLV 240
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-18
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 37/212 (17%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------- 693
R++S VR G+ + I G VG+G++ L A+ G P + G I + GK
Sbjct: 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335
Query: 694 -AYVS----QTAWIQTGSIRENILFGS--------PMDSHQYQETLERCSLIKDLELLPY 740
AYV + SI ENI S +D + + ER I+ L +
Sbjct: 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTP 393
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
IG LSGG +Q++ LAR L D + +LD+P +D + ++ ++ L
Sbjct: 394 SPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR--LIREL 447
Query: 801 S--GKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
+ GK +L+++ ++ L D +L+M +G I
Sbjct: 448 AAEGKAILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 2e-18
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA 700
S K +R++S EVR G+ V I G VG+G++ L A+ G P G I + GK
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP------- 63
Query: 701 WIQTGSIRENILFGS---PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757
+ S R+ I G P D + L+ D L +N + LSGG
Sbjct: 64 -VTRRSPRDAIRAGIAYVPEDRKRE-------GLVLD---LSVAENIALSSL---LSGGN 109
Query: 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA 817
+Q++ LAR L +D + +LD+P VD + ++ A +GK VLL++ ++D L
Sbjct: 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169
Query: 818 F-DSVLLMSDGEI 829
D +L+M +G I
Sbjct: 170 LCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTA 694
+ NIS + PGQ+V + G GSGKSTLL+A L + +T+G IQ+ G + A
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQKWRKA 78
Query: 695 Y--VSQTAWIQTGSIRENILFGSPMDSHQYQETL---ERCSLIKDLELLPYGDNTEIGER 749
+ + Q +I +G+ R+N+ P +E E L +E P + + +
Sbjct: 79 FGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
G LS G KQ + LAR++ A I LLD+P + +D T + + +A + V+L
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVILSE 194
Query: 810 HQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850
H+++ + L++ + ++ + +LL F++ +S
Sbjct: 195 HRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 2e-18
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 23/208 (11%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------ 692
+ +KP + ++SL V G+ + G G+GK+T L + GE+ T GT + G
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 693 ------TAYVSQ--TAWIQTGSIRENILFGSPMDSH-QYQETLERCSLIKDLELLPYGDN 743
Y Q + ++RE++ F + + + + E L++ L L N
Sbjct: 71 KAARQSLGYCPQFDALF-DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-N 128
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
LSGG K+++ LA AL + LLD+P S +D + ++++ ++E G+
Sbjct: 129 KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGR 183
Query: 804 VVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
++L TH +D A D + +MSDG++
Sbjct: 184 SIILTTHSMDEAEALCDRIAIMSDGKLR 211
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 34/210 (16%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTA-------- 694
+ ++SL++ G+ VA+ G GSGK+TLL I G E P GTI G+ A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQER 74
Query: 695 ---YVSQT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
+V Q A + ++ +N+ FG P + + K ELL +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA----KVHELLKLVQLDWLA 130
Query: 748 ERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL------FNDYVMEAL 800
+R LSGGQ+QR+ LARAL + + LLD+PF A+DA L +D +
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL---- 186
Query: 801 SGKVVLLVTH-QVDFLPAFDSVLLMSDGEI 829
+ VTH Q + L D V++M+ G I
Sbjct: 187 -HVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 2e-18
Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 43/235 (18%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I + + +W + +R+ S V G A+ G GSGKSTL A++G V G
Sbjct: 6 GIVVNDVTVTWRNGHT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 687 IQVYGK----------TAYVSQTA---WIQTGSIRENILFG-----------SPMDSHQY 722
I + G+ AYV Q+ W + + ++ G D
Sbjct: 64 ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123
Query: 723 QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782
L R ++++ + + +IGE LSGGQK+R+ LARA+ Q + LLD+PF+
Sbjct: 124 TAALAR------VDMVEF-RHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTG 172
Query: 783 VDAHTAS---SLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834
VD T + SL + E GK +L+ TH + + F +M G +L + P
Sbjct: 173 VDVKTEARIISLLRELRDE---GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGP 224
|
Length = 272 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 38/235 (16%)
Query: 620 NIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
++N++ + S + ++S ++ G+ + + GE GSGKSTL AILG
Sbjct: 3 EVKNLSVSFPTGG--------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54
Query: 680 VPHTQGTIQVYGKTAYVSQTAWIQTGSIREN---ILFGSPMDS--------HQYQETL-- 726
+ T G+I GK IR ++F PM S Q E L
Sbjct: 55 LKPTSGSIIFDGKDLLKLSRRLR---KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111
Query: 727 -------ERCSLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDD 778
E L L+ G E+ R + LSGGQ+QR+ +ARAL + + + D+
Sbjct: 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE 171
Query: 779 PFSAVDAHTAS---SLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
P SA+D + L ++ G +L +TH + + D V +M G+I
Sbjct: 172 PTSALDVSVQAQILDLLKK--LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-18
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 33/218 (15%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAI------LGEVPHTQGTIQVYGKTAY----- 695
++ISL++ G+ A+ G G GKSTLL + + P G + + GK Y
Sbjct: 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE-GEVLLDGKDIYDLDVD 75
Query: 696 ----------VSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNT 744
V Q GSI +N+ +G + H + E +++ L D
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRL--HGIKLKEELDERVEEALRKAALWDEV 133
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
+ + LSGGQ+QR+ LARAL + ++ LLD+P SA+D + + + + ++ L +
Sbjct: 134 KDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI--EELIAELKKEY 191
Query: 805 -VLLVTH---QVDFLPAFDSVLLMSDGEILRAAPYHQL 838
+++VTH Q + D + +G ++ P Q+
Sbjct: 192 TIVIVTHNMQQAARVA--DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 56/214 (26%)
Query: 636 SWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGK- 692
S S K ++N+S + +PG+ AI G G+GKSTLL A+ G G + + G+
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 693 ---------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDN 743
YV Q ++IL + +ETL + ++
Sbjct: 75 LDKRSFRKIIGYVPQ----------DDILHPT----LTVRETLMFAAKLR---------- 110
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-- 801
LSGG+++R+ +A L + + LD+P S +D+ +A VM L
Sbjct: 111 --------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ-----VMSLLRRL 157
Query: 802 ---GKVVLLVTHQV--DFLPAFDSVLLMSDGEIL 830
G+ ++ HQ + FD +LL+S G ++
Sbjct: 158 ADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +++ S W+E ++N+SLEV G I G GSGKS LL I G + G I
Sbjct: 1 LKVENLSKDWKEFK----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI 56
Query: 688 QVYGK-----------TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLI-KD 734
+ GK +YV Q A ++ +NI +G +E + I +
Sbjct: 57 LLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM 116
Query: 735 LELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
L + + R LSGG++QR+ +ARAL + I LLD+PFSA+D T L
Sbjct: 117 LGI------DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLRE 170
Query: 794 DY-VMEALSGKVVLLVTHQVDFLPAF---DSVLLMSDGEI 829
+ + G VL VTH DF A+ D V +M +G++
Sbjct: 171 ELKKIRKEFGVTVLHVTH--DFEEAWALADKVAIMLNGKL 208
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 43/190 (22%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TAYVSQ 698
+ ++++S E++PG ++ I G G+GKS+L A+ G P G I + ++ Q
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71
Query: 699 TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758
++ G++RE +++ P+ D LSGG++
Sbjct: 72 RPYLPLGTLREQLIY-------------------------PWDD---------VLSGGEQ 97
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK--VVLLVTHQVDFLP 816
QR+ AR L LD+ SA+D + D + + L V+ V H+
Sbjct: 98 QRLAFARLLLHKPKFVFLDEATSALDEESE-----DRLYQLLKELGITVISVGHRPSLWK 152
Query: 817 AFDSVLLMSD 826
D VL +
Sbjct: 153 FHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-17
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 670 STLLAAILGEVPHTQGTIQVYGK--------------TAYVSQTAWI-QTGSIRENILFG 714
STLL I G + T GTI + G+ V Q + ++REN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 715 SPMDS--HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772
+ +E LER L L+ P G LSGGQKQR+ +ARAL +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 773 IYLLDDPFS 781
+ LLD+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-17
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 36/208 (17%)
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA--------YVSQT--- 699
L G+ + + G G+GK+TLL AILG +P +GT++V G + YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 700 AWIQTGSIRENILFGSP-----------MDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
AW S+ ++ G D ++ L R L TE+ +
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL------------TELAD 108
Query: 749 RGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
R V LSGGQ+QR+ +ARAL + LLD+PF+ +D T L ++ A +G +L+
Sbjct: 109 RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 808 VTHQ-VDFLPAFDSVLLMSDGEILRAAP 834
TH + D V+L++ I P
Sbjct: 169 TTHDLAQAMATCDRVVLLNGRVIADGTP 196
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 3e-17
Identities = 66/236 (27%), Positives = 120/236 (50%), Gaps = 17/236 (7%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
A++ + SF+++ +P + IS + G+ VAI GE G+GKST+L + G+
Sbjct: 262 AVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319
Query: 687 IQVYGKT--AYVSQTAWIQTG-----------SIRENILFGSPMDSHQYQETLERCSLIK 733
I + G+ Q+ G +I NI +G P + + + I
Sbjct: 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379
Query: 734 DL-ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
D + LP G +T +GERG+ LSGG+KQR+ +AR + ++ I +LD+ SA+D HT
Sbjct: 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT-EQAI 438
Query: 793 NDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
+ E +G+ L++ H++ + D ++++ +G I+ + +LLA+ + E+
Sbjct: 439 QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-17
Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 44/274 (16%)
Query: 628 ISIKSASFSWEESSSKPT--MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQ 684
I +++ S ++ ++ + + ++SLE+ G+ I G G+GKSTLL I E P T
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TS 60
Query: 685 GTIQVYGK-----TAYVSQTAWIQTGSI------------RENILFGSPMDSHQYQETLE 727
G++ V G+ + + + G I EN+ F + E +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 728 RCS-LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
R + L++ + L D LSGGQKQR+ +ARAL + I L D+ SA+D
Sbjct: 121 RVAELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 787 TASSLFNDYVMEALS------GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLL 839
T S ++E L G ++L+TH+++ + D V ++ G ++ ++
Sbjct: 176 TTQS-----ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230
Query: 840 ASSKE--FQELVSAHKETAGSERLAEVTPSQKSG 871
A+ K QE + ET + E+ +SG
Sbjct: 231 ANPKHAITQEFIG---ETLEIDLPEELLERLESG 261
|
Length = 339 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 4e-17
Identities = 61/210 (29%), Positives = 109/210 (51%), Gaps = 14/210 (6%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV-------YGKT--- 693
P + +S V P +KV + G G+GKS++L A+ V +G I + +G T
Sbjct: 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309
Query: 694 ---AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERG 750
+ + Q+ + +G++R NI S + E LER + ++ P+G + E+ E G
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH 810
N S GQ+Q + LARAL + + I +LD+ ++VD T SL + E +L++ H
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT-DSLIQRTIREEFKSCTMLVIAH 1428
Query: 811 QVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+++ + D +L++S G++L +LL+
Sbjct: 1429 RLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458
|
Length = 1495 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 4e-17
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692
+SL V G+ VA+ G G+GK+TLL I+G +P G+I+ G+
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG 76
Query: 693 TAYVSQTAWIQTG-SIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER- 749
YV + I ++ EN+L G + + LER EL P + ER
Sbjct: 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV-----YELFP-----RLKERR 126
Query: 750 ---GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-----S 801
LSGG++Q + +ARAL + LLD+P + + + + EA+
Sbjct: 127 KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIRELRDE 181
Query: 802 GKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLA 840
G +LLV F L D ++ G ++ +LLA
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 40/244 (16%)
Query: 628 ISIKSASFSWEESSSK-PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQG 685
I +K+ S + ++ K ++++SL V G+ I G G+GKSTL+ I G E P T G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSG 60
Query: 686 TIQVYGKTAYVSQTAWIQTGSIRENI--------LFGS---------PMD-SHQYQETLE 727
++ V G ++ + + R I L S P++ + + +E
Sbjct: 61 SVLVDGTD--LTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE 118
Query: 728 RCSLIKDLELLPYGDNTEIGER-GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
+ LELL + + LSGGQKQR+ +ARAL + + L D+ SA+D
Sbjct: 119 E----RVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 787 TASSLFNDYVMEALS------GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLL 839
T S ++ L G ++L+TH+++ + D V +M GE++ ++
Sbjct: 175 TTQS-----ILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
Query: 840 ASSK 843
A+ +
Sbjct: 230 ANPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYV-SQTAWIQ-- 703
+++S EV G+++ + G G+GKSTLL + G P GT+ V G+ + +
Sbjct: 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE 98
Query: 704 -TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERG----VNLSGGQK 758
TG RENI + +E E+ I + +E+G+ S G K
Sbjct: 99 LTG--RENIYLNGRLLGLSRKEIDEKIDEIIEF--------SELGDFIDLPVKTYSSGMK 148
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-----GKVVLLVTHQVD 813
R+ A A + DI L+D+ + DA F + L GK V+LV+H
Sbjct: 149 ARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGKTVILVSHDPS 203
Query: 814 FLPAF-DSVLLMSDGEI 829
+ D L++ G+I
Sbjct: 204 SIKRLCDRALVLEKGKI 220
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-17
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 25/199 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA--------YVS 697
++ ++L ++ G+ +++ G G GKSTLL I G T G + + GK V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 698 QT----AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753
Q W+ ++RENI ++ R + + + L+ + + +R L
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD--KRPGQL 115
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQ 811
SGG KQR+ +ARAL + LLD+PF A+DA T +L + +M+ VL+VTH
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQIWEEHRVTVLMVTHD 174
Query: 812 VD---FLPAFDSVLLMSDG 827
VD L D V+++++G
Sbjct: 175 VDEALLLS--DRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGK-------- 692
+ + +++L++ G+ V + G G GK+T L I G E P T G I + G+
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPK 70
Query: 693 ---TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDL----ELLPYGDNT 744
A V Q A ++ +NI FG + E ER + +L LL
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL------ 124
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGK 803
+ LSGGQ+QR+ L RA+ ++ ++L+D+P S +DA + + ++ G
Sbjct: 125 --DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT 182
Query: 804 VVLLVTH-QVDFLPAFDSVLLMSDGEI 829
+ VTH QV+ + D + +M+DG+I
Sbjct: 183 TTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-16
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I++++ S ++ +P + N+SL + PG+++ + G G+GKSTLL + GE+ G +
Sbjct: 4 ITLENLSLAY---GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 688 QVYG--KTAYVSQT------------------AWIQTGSIRENILFGSPMDSHQYQETLE 727
+ Y+SQ + + E + LE
Sbjct: 61 TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 728 RCSLIKDLELLPY------------GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775
D L ++ + LSGG ++R+ LARAL ++ D+ L
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVALARALLEEPDLLL 176
Query: 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815
LD+P + +D + L DY+ G V++V+H FL
Sbjct: 177 LDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFL 213
|
Length = 530 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-16
Identities = 65/276 (23%), Positives = 109/276 (39%), Gaps = 30/276 (10%)
Query: 556 YFLNVPLYASNVFTF------VATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA-- 607
+ P Y S TF V V + D R+ F +A
Sbjct: 308 ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367
Query: 608 -----PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAIC 662
E + R+ +N + I++++ S + + ++ EVRPG+++ I
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSL--RTPDGQTLLSELNFEVRPGERLLIT 425
Query: 663 GEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTGSIRENILFGSPMDSH 720
GE G+GK++LL A+ G P G I + ++ Q ++ G++RE + + P +
Sbjct: 426 GESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCY--PNAAP 483
Query: 721 -----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775
+ L + L E L E LSGG++QR+ AR L
Sbjct: 484 DFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVF 538
Query: 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LD+ SA+D T L+ + E L V+ V H+
Sbjct: 539 LDEATSALDEETEDRLYQ-LLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-16
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 45/223 (20%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------- 693
R +SLEV G+ VA+ G G+GK+TLL I+G V G I G+
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79
Query: 694 -AYVSQTAWI-QTGSIRENILFGS---PMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
AYV + I ++ EN+L G+ Q + LE EL P + E
Sbjct: 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ-ERDLEEV-----YELFP-----RLKE 128
Query: 749 R----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL---- 800
R LSGG++Q + +ARAL + LLD+P + A + + + EA+
Sbjct: 129 RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL----APKIVEE-IFEAIKELR 183
Query: 801 --SGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLA 840
G +LLV F L D ++ +G I+ + +LLA
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-16
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYGKT---------- 693
+ ++SLE+ G+ +A+ G+ G GK+TLL AI G V G I + +
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 694 -AYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER-G 750
A + Q A + +N+ FG + ER + L+L+ GD
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA--DALKLVGLGD---AAAHLP 135
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY--VMEALSGKVVLLV 808
LSGG +QRI +ARA+ + D+ LLD+P SA+DA+ +++ + + E L +L V
Sbjct: 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV 195
Query: 809 TH-QVDFLPAFDSVLLMSDGEILRAAPYHQL 838
TH Q D L D +M DG + L
Sbjct: 196 THDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 6e-16
Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 59/299 (19%)
Query: 1023 LSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVS---IPVIFL-AIRLQRYYFV 1078
+++DL PF+L+F L V+A++ +++V IP+I L + LQR
Sbjct: 265 TALIDL--PFALLF-----------LLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311
Query: 1079 TAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAA 1138
A+E MR ++ L ES++G TI+A E RF + + A
Sbjct: 312 LAEESMRE-SAQRNA---VLVESLSGLETIKALNAEGRFQRRWEQT---------VAALA 358
Query: 1139 NEWLIQRLETLSATVISSAAF-------CMVLLPPGTF--TPGFIGMALSYGL---SLNS 1186
L R LS + A F +V++ G + + G + M GL + S
Sbjct: 359 RSGLKSRF--LSNLATNFAQFIQQLVSVAIVVV--GVYLISDGELTMG---GLIACVMLS 411
Query: 1187 SLVMSIQNQCT--LANY---IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVV-GKVDIC 1240
++ Q L Y +++ L++ M +P E PE + P + G+++
Sbjct: 412 GRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE----GTRFLHRPRLQGEIEFR 467
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
++ Y L +S T G K+ I+GR GSGK+TL L L +P G +L+DG
Sbjct: 468 NVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-16
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+ ++ S ++ + ++++S + G ++AI G G+GKSTLL + GE+
Sbjct: 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS 376
Query: 685 GTIQVYG---KTAYVSQT--AWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELL 738
GT++V G K Y Q ++ E + G P D + + L R
Sbjct: 377 GTVKV-GETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF-------GF 428
Query: 739 PYGD-NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL---FND 794
D +G LSGG+K R+ LA+ L Q ++ LLD+P + +D + +L D
Sbjct: 429 TGEDQEKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD 484
Query: 795 YVMEALSGKVVLLVTHQVDFL 815
+ G VLLV+H FL
Sbjct: 485 F-----EG-TVLLVSHDRYFL 499
|
Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 7e-16
Identities = 67/294 (22%), Positives = 117/294 (39%), Gaps = 57/294 (19%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIQVYGKTA 694
+ P +R++S EV PG+ + I GE GSGKSTL A++G T G + + G+
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR-- 75
Query: 695 YVSQTAWIQTGSIREN-----ILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
+ + ++F PM S T+ + + L L G E +R
Sbjct: 76 --DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD-QIREALRLHGKGSRAEARKR 132
Query: 750 GVN-------------------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASS 790
V LSGG +QR+ +A AL + + D+P +A+D T
Sbjct: 133 AVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ-- 190
Query: 791 LFNDYVMEAL------SGKVVLLVTHQVDFLPAF-----DSVLLMSDGEILRAAPYHQLL 839
+++ L G VL +TH D V++M GEI+ P ++L
Sbjct: 191 ---AQILDLLKDLQRELGMAVLFITH----DLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 840 ASSKE--FQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVSKG 891
++ + + L++A + + P ++ ++ K++ KG
Sbjct: 244 SNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVR--NLSKRYGSRKG 295
|
Length = 539 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 8e-16
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 48/209 (22%)
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG---- 705
L V G+ VAI G G+GKSTLL I G + G+I+V ++ + A Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS--HTGLAPYQRPVSML 75
Query: 706 ----------SIRENILFG-------SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
++R+NI G + + + ++ + L+ LP
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-------- 127
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---- 804
LSGGQ+QR+ LAR L + I LLD+PFSA+D M AL ++
Sbjct: 128 ---QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE------MLALVKQLCSER 178
Query: 805 ---VLLVTHQV-DFLPAFDSVLLMSDGEI 829
+L+VTH + D + ++S G+I
Sbjct: 179 QRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 9e-16
Identities = 83/403 (20%), Positives = 170/403 (42%), Gaps = 53/403 (13%)
Query: 921 LFFSIASLSHLTFVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVST--LFLMSRSL 978
L + A+LS L + + ++ + + + N L+VV L++ + +L++
Sbjct: 28 LITAAATLS-LPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW-- 84
Query: 979 SSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAV 1038
LG R + + L SF+D G ++SR+++D +++ I SL A+
Sbjct: 85 ----LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140
Query: 1039 GATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVA 1095
L ++ + + + ++ +++P++ L I + + + +L+ ++ +A
Sbjct: 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPI------LLFGRRVRKLSRESQDRIA 194
Query: 1096 N---HLAESIAGAMTIRAF--EEEDR-FFAKNLDLIDTNASPFFHSFAANEWLIQRLETL 1149
+ + E++ T++AF E+ +R F ++ A L T
Sbjct: 195 DAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR---QRIRTRALL-----TA 246
Query: 1150 SATVISSAAFCMVL------LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 1203
V+ A VL + G + G +G + Y + + S+ TL+
Sbjct: 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSI-------GTLSEVWG 299
Query: 1204 SVERLNQYMHVPSEAPEVVEDNRPPPN-----WPVVGKVDICDLQIRY--RPDSPLVLKG 1256
++R E + D + P + P+ G+++ + Y RPD P L G
Sbjct: 300 ELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP-ALDG 358
Query: 1257 ISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
++ T G + +VG +G+GK+TL L R +P G+IL+DG
Sbjct: 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 1e-15
Identities = 112/488 (22%), Positives = 201/488 (41%), Gaps = 96/488 (19%)
Query: 889 SKGDQLI--KQEERETGDIGLKPYIQYLNQNK-----GFLFFSIASLSHLT--FVIGQIL 939
S G +Q + ET D+ L + ++ F+F +++SL + F G+++
Sbjct: 130 SAGASEKEAEQGQSETADL-LFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVI 188
Query: 940 QNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSR------SLSSVVLGIRSSKSLFS 993
L + P ++ I L+ S++ R +++ + L IR
Sbjct: 189 --DTLGGDKGPPALA--SAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIRE------ 238
Query: 994 QLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAV 1053
L SL R + F+D G + SR+SSD + + ++ + LG +
Sbjct: 239 DLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298
Query: 1054 VTWQ---VLFVSIPVIFLAIR-LQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAM-TI 1108
++ + V +++P++FLA + + Y + ++EL K+ N +AE M T+
Sbjct: 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKA---NQVAEEALSGMRTV 353
Query: 1109 RAF----EEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLL 1164
R+F E RF + + N ++A W L L ++
Sbjct: 354 RSFAAEEGEASRFKEALEETLQLNKRKAL-AYAGYLWTTSVLGMLIQVLV---------- 402
Query: 1165 PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSE------- 1217
L YG L + +S N L ++++ E+L + + V S
Sbjct: 403 -------------LYYGGQLVLTGKVSSGN---LVSFLLYQEQLGEAVRVLSYVYSGMMQ 446
Query: 1218 ----APEVVE--DNRP--PPN-----WPVVGKVDICDLQIRY--RPDSPLVLKGISCTFE 1262
+ +V E D +P P + G ++ D+ Y RPD P VLKG++ T
Sbjct: 447 AVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLH 505
Query: 1263 GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYD-----EPMELMKREGS 1316
G + +VG +GSGK+T+ L L +P G++L+DG L +YD + L+ +E
Sbjct: 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565
Query: 1317 LFGQLVKE 1324
LF V+E
Sbjct: 566 LFSGSVRE 573
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 33/183 (18%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----TAYVSQTAWI 702
+S + G+ + + G GSGK+TLL I G +P GTI++ G ++
Sbjct: 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78
Query: 703 --QTG-----SIRENILF------GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
+ ++ EN+ F G +D LE L L LP+G
Sbjct: 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIA---AALEAVGL-APLAHLPFG-------- 126
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLV 808
LS GQK+R+ LAR L + I++LD+P +A+DA A +LF + + L G +V+
Sbjct: 127 --YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHLAQGGIVIAA 183
Query: 809 THQ 811
TH
Sbjct: 184 THI 186
|
Length = 207 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--- 702
+ +IS V G+ + G G+GK+T + ILG + G + GK ++ I
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 703 -------QTGSIRENIL-FGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752
+ + ++ + + + ++ ++ LEL Y + +R
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDE--WLERLELSEYAN-----KRVEE 128
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQ 811
LS G +Q++Q A+ D ++ +LD+PFS +D L D + E A +GK V+L THQ
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQ 187
Query: 812 VDFLPAF-DSVLLMSDGEI 829
++ + D VLL++ G
Sbjct: 188 MELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 72/228 (31%), Positives = 102/228 (44%), Gaps = 38/228 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYGKTAYVSQTAWIQT 704
+ I LEV+PG+ VAI G GSGK+TLL I L E P GTI+V T +++ Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQK 77
Query: 705 GSIR----------------------ENILFGSPM----DSHQYQETLERCSLIK-DLEL 737
G IR ENI+ G P+ + + R L K L
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARARELLAKVGLA- 135
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
G T R LSGGQ+QR+ +ARAL ++ L D+P SA+D + N
Sbjct: 136 ---GKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189
Query: 798 EALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASSKE 844
A + +++VTH++ F D + M G I+ P L A ++
Sbjct: 190 LAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQ 237
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 25/244 (10%)
Query: 623 NVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682
I ++ SF + +++ ++++S V G+ VAI G GSGKSTL + G +
Sbjct: 1 MKEEIIRVEHISFRYPDAA-TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59
Query: 683 TQGTIQVYGKTAYVSQTAW---IQTG-------------SIRENILFGSPMDSHQYQETL 726
GTI V G +T W Q G ++++++ FG +E +
Sbjct: 60 EAGTITVGGMV-LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV 118
Query: 727 ERC-SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD- 784
ER ++ + + + + LSGGQKQR+ +A L DI +LD+ S +D
Sbjct: 119 ERVDQALRQVGMEDFLN-----REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 785 AHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
L ++ G VL +TH +D D V++M+ GEIL ++ S
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHM 233
Query: 845 FQEL 848
QE+
Sbjct: 234 LQEI 237
|
Length = 279 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-15
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691
+ SL+V G+ I G GSGKSTL+ + + T+G I V G
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 692 --KTAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLE---LLPYGDNTE 745
K + V Q+ A + ++ EN+ FG + E ER ++ LE L Y D
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA--LEALELVGLEGYADKY- 161
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKV 804
E LSGG +QR+ LARAL D DI L+D+ FSA+D + + ++ + ++A K
Sbjct: 162 PNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT 217
Query: 805 VLLVTHQVDFLPAF---DSVLLMSDGEILR 831
++ +TH D A D + +M DGEI++
Sbjct: 218 IVFITH--DLDEALRIGDRIAIMKDGEIVQ 245
|
Length = 386 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 31/208 (14%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKT--------- 693
++ +SL + G+ VAI G GSGKSTLL +LG + P T G + G++
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNP-TSGEVLFNGQSLSKLSSNER 77
Query: 694 --------AYVSQTAWIQTG-SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNT 744
++ Q + + EN+ + +E ER + L G
Sbjct: 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEM----LEKVGLEH 133
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL---S 801
I R LSGG++QR+ +ARAL + L D+P +D + A +F+ +M L
Sbjct: 134 RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD--LMLELNREL 191
Query: 802 GKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
L+VTH ++ D VL M DG++
Sbjct: 192 NTSFLVVTHDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
I+N + I +++ SFS+ S ++N+S E+ G+ VAI G GSGKST+ + G +
Sbjct: 1 IKNKSVMIKVENVSFSYPNSE-NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 681 PHTQGTIQVYGKTAYVSQTAWIQTGSIREN--ILFGSPMDSHQYQETLE---------RC 729
G I++ G T +S+ + IR+ I+F +P D+ T+E +
Sbjct: 60 KPQSGEIKIDGIT--ISKENLKE---IRKKIGIIFQNP-DNQFIGATVEDDIAFGLENKK 113
Query: 730 ---SLIKDLELLPYGDNTEIGE----RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782
+KD+ + + + NLSGGQKQR+ +A L + +I + D+ S
Sbjct: 114 VPPKKMKDI-IDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSM 172
Query: 783 VDAHTASSLFNDYVMEAL---SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833
+D + +M L K ++ +TH +D D V++ S+G+++
Sbjct: 173 LDPKGKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 4e-15
Identities = 63/204 (30%), Positives = 85/204 (41%), Gaps = 38/204 (18%)
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQTAWIQTGSI- 707
L G+ AI G GSGKSTLL I G E P G + + G + A +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVSMLF 76
Query: 708 RENILFG------------------SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
+EN LF + D + L R L + LP GE
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-------GE- 128
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA---HTASSLFNDYVMEALSGKVVL 806
LSGG++QR+ LAR L +D + LLD+PF+A+D L D E + VL
Sbjct: 129 ---LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVL 183
Query: 807 LVTHQV-DFLPAFDSVLLMSDGEI 829
+VTHQ D V+ + +G I
Sbjct: 184 MVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 32/184 (17%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------TAYVSQTA 700
++S + G+ + I G G+GK+TLL + G + G + G+ +Y
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78
Query: 701 WI--QTG-----SIRENILFGSPMDSHQYQET------LERCSLIKDLELLPYGDNTEIG 747
++ Q G + EN+ F H L + L LE LP G
Sbjct: 79 YLGHQPGIKTELTALENLHFWQRF--HGSGNAATIWEALAQVGL-AGLEDLPVG------ 129
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
LS GQ++R+ LAR A +++LD+PF+A+D + L A G +VLL
Sbjct: 130 ----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185
Query: 808 VTHQ 811
THQ
Sbjct: 186 TTHQ 189
|
Length = 209 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 52/214 (24%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIQVYGKTA 694
K ++ ++L ++ G+ A+ G GSGKSTL I+G EV T+G I G
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV--TEGEILFKG--- 63
Query: 695 YVSQTAWIQTGSIRENILFGSPMD--------SHQYQETLERCSLIKDLELLPYGDNTEI 746
E+I P + + QY + +K+ + L
Sbjct: 64 --------------EDITDLPPEERARLGIFLAFQYPPEIPG---VKNADFL-------- 98
Query: 747 GERGVN--LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GK 803
R VN SGG+K+R ++ + L + D+ +LD+P S +D A L + + + GK
Sbjct: 99 --RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGK 155
Query: 804 VVLLVTHQ---VDFLPAFDSVLLMSDGEILRAAP 834
VL++TH +D++ D V ++ DG I+++
Sbjct: 156 SVLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 6e-15
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
++ Y VLK +S T + G K+ IVG +GSGK+TL L RL +P G+IL+DG
Sbjct: 5 NVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV 64
Query: 1301 -LAEYD 1305
L + D
Sbjct: 65 DLRDLD 70
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 31/159 (19%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA---- 700
MR L V G++VAI G G+GKSTLL I G + G++ + G+ + +
Sbjct: 15 PMR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73
Query: 701 --WIQTG------SIRENILFG-------SPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
Q ++ +NI G + + + + L LP
Sbjct: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP------ 127
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
G+ LSGGQ+QR+ LAR L ++ I LLD+PFSA+D
Sbjct: 128 -GQ----LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 32/243 (13%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVP 681
AI I++ + + E K ++NI+L++ Q A+ G G GKSTLL ++ L
Sbjct: 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 682 HTQGTIQVYGKTAYVSQTAWIQ----TG-----------SIRENILFGSPMDSHQYQETL 726
+G + G+ Y + ++ G SI +NI +G + + ++ L
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 727 ERC---SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783
+ SL K L + + + LSGGQ+QR+ +ARAL + ++ LLD+P SA+
Sbjct: 118 DEIVEESLKK--AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 784 DAHTASSLFNDYVMEALSGK-VVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841
D + + +++ L K +++VTH + D DGE++ P Q+ +
Sbjct: 176 DPIATGKI--EELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
Query: 842 SKE 844
KE
Sbjct: 234 PKE 236
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 37/229 (16%)
Query: 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
I K S+S S K +++IS++ G I G G+GKSTL+ I + T+G
Sbjct: 2 NEIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58
Query: 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLI 732
+I + G K V Q + G++++NI +G PM +
Sbjct: 59 SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGE----------- 106
Query: 733 KDLELLPY----GDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
K++++ Y G N E R V NLSGG+ QR+ +AR L + ++ LLD+P SA+D T
Sbjct: 107 KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-T 165
Query: 788 ASSLFNDYVMEALS--GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAA 833
++ + + +++ + V+ +TH ++ D ++ G ++ A
Sbjct: 166 STEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-14
Identities = 88/376 (23%), Positives = 169/376 (44%), Gaps = 72/376 (19%)
Query: 958 LIVVYLLIGFVSTLF------LMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTP 1011
L Y+ + ++ L +R+ VV +R+ ++++ R P+S +D+ P
Sbjct: 67 LAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRT------DVMDAALRQPLSAFDTQP 120
Query: 1012 LGRILSRVSSDLSIV-DLDIPFSLIFAVGATTNACSNLGVLAV----VTWQVLFVSIPVI 1066
+G+++SRV++D ++ DL + V + + +G + V + W++ V+I +I
Sbjct: 121 VGQLISRVTNDTEVIRDL-----YVTVVATVLRSAALIGAMLVAMFSLDWRMALVAI-MI 174
Query: 1067 FLAIRL-----QRYYFVTAKELMRLNGTTKSLVA---NHLAESIAGAMTIRAFEEEDRFF 1118
F A+ + QRY + + ++ +A + E I G I+ F ++ RF
Sbjct: 175 FPAVLVVMVIYQRYSTPIVRRV-------RAYLADINDGFNEVINGMSVIQQFRQQARFG 227
Query: 1119 AKNLDLIDTNASPFFHSFAANEWLIQRLETLSA---------TVISSAAFCMVLL----- 1164
+ + + + S H A R++TL ++ S+ C +L+
Sbjct: 228 ER---MGEASRS---HYMA-------RMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFS 274
Query: 1165 PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVED 1224
GT G + +SY LN L+ Q L +++ ER+ + M P + + D
Sbjct: 275 ASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ--QYGND 332
Query: 1225 NRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGAL 1284
+RP + G++DI ++ YR D+ VL+ I+ + + +VG TGSGK+TL L
Sbjct: 333 DRPLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLL 387
Query: 1285 FRLIEPARGKILVDGK 1300
G+I +DG+
Sbjct: 388 MGYYPLTEGEIRLDGR 403
|
Length = 592 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 70/202 (34%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696
+ISL++ GQ VA+ G GSGK+TLL I G T G I+ +G +V
Sbjct: 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79
Query: 697 SQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLI----KDLELLPYGDNTEIGER-G 750
Q A + ++ +NI FG + + ER + K +LL + +R
Sbjct: 80 FQHYALFRHMTVFDNIAFGLTVLPRR-----ERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL--FNDYVMEALSGKVVLLV 808
LSGGQKQR+ LARAL + I LLD+PF A+DA L + + E L V V
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSV-FV 193
Query: 809 TH-QVDFLPAFDSVLLMSDGEI 829
TH Q + + D V++MS G I
Sbjct: 194 THDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------- 693
++SL V+ G+ A+ GE G+GKSTL+ + G G I+V GK
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80
Query: 694 -AYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
V Q + T ++ ENI+ G + + + IK+L YG + +
Sbjct: 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSER-YGLPVDPDAKVA 139
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVT 809
+LS G++QR+++ +ALY+ A + +LD+P + + A LF ++ L GK ++ +T
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEGKTIIFIT 197
Query: 810 H 810
H
Sbjct: 198 H 198
|
Length = 501 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 38/242 (15%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
IENV+++ +K + ++SL++ G +I G G+GKSTLL+ + +
Sbjct: 4 IENVSKSYG------------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL 51
Query: 681 PHTQGTIQVYG------KTAYVSQTAWI--QTGSI------RENILFGS-PMDSHQYQET 725
G I + G + +++ I Q I R+ + FG P Q + T
Sbjct: 52 KKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY--SQGRLT 109
Query: 726 LERCSLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
E +I E + Y ++ +R ++ LSGGQ+QR +A L QD D LLD+P + +D
Sbjct: 110 KEDRRIIN--EAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 785 AHTASSLFNDYVMEALS---GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLA 840
+ + ++ L+ GK +++V H ++F + D ++ + +G++++ +++
Sbjct: 168 MKHSVQIMK--ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
Query: 841 SS 842
Sbjct: 226 PE 227
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-14
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691
P + +S E+ P +KV I G G+GKS++L A+ V +G I + G
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312
Query: 692 -KTAYVSQTAWIQTGSIRENILFGSPMDSHQ---YQETLERCSLIKDLELLPYGDNTEIG 747
+ Q + +G++R N+ P + H E+LER L + G + E+
Sbjct: 1313 KVLGIIPQAPVLFSGTVRFNL---DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
E G N S GQ+Q + LARAL + + I +LD+ +AVD T +L + E +L+
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLI 1428
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ H+++ + D +L++ G ++ LL+
Sbjct: 1429 IAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461
|
Length = 1622 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-14
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK- 692
E K ++N+S +PG+ +A+ G G+GK+TL+ A+ P G++ + G
Sbjct: 32 CRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP 91
Query: 693 ---------TAYVSQ-TAWIQTGSIRENILFGS--PMDSHQYQET-LERCS-LIKDLELL 738
+AYV Q +I T ++RE+++F + M ++ ER +++ L L
Sbjct: 92 IDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 739 PYGDNTEIGERGV--NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
NT IG G LSGG+++R+ A L D + D+P S +D+ A S+
Sbjct: 152 KCA-NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK 210
Query: 797 MEALSGKVVLLVTHQ--VDFLPAFDSVLLMSDGEIL-RAAPYH 836
A GK ++ HQ + FD ++LM++G + +P
Sbjct: 211 GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 36/215 (16%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAW------ 701
+SL++RPG+ +AI G G+GKSTLL A+ GE+ G + + G S
Sbjct: 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL-NSWPPEELARHR 77
Query: 702 ---IQTGSI------RENILFG-----SPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
Q S+ +E + G S + + + + DL L D
Sbjct: 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT-- 135
Query: 748 ERGVNLSGGQKQRIQLARALYQ------DADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
LSGG++QR+QLAR L Q LD+P SA+D A
Sbjct: 136 -----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190
Query: 802 GKVVLLVTHQVDFLPAF-DSVLLMSDGE-ILRAAP 834
G VL V H ++ + D ++L+ G I +P
Sbjct: 191 GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-14
Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 27/249 (10%)
Query: 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRN-ISLEVRPGQKVAICGEVGSGKSTL 672
N++ KG+ N+ R + K + T+ N ++ PG+ +A+ G GSGKSTL
Sbjct: 53 NMKNKGS--NIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTL 110
Query: 673 LAAILGEVPHT--QGTI---------QVYGKTAYVSQTAWIQTG-SIRENILFGS----P 716
L A+ G + GTI Q+ +T +V+Q + ++RE ++F S P
Sbjct: 111 LNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 170
Query: 717 MDSHQYQETLERCSLIKDLELLPYGDNTEIGE---RGVNLSGGQKQRIQLARALYQDADI 773
+ ++ L S+I +L L NT IG RG+ SGG+++R+ +A + + +
Sbjct: 171 KSLTKQEKILVAESVISELGLTKCE-NTIIGNSFIRGI--SGGERKRVSIAHEMLINPSL 227
Query: 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD--FLPAFDSVLLMSDGEILR 831
+LD+P S +DA A L A GK ++ HQ FDSVL++S+G L
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 832 AAPYHQLLA 840
+A
Sbjct: 288 FGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 37/207 (17%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------- 693
R +SLEV G+ + G G GK+TLL ++G +P G+I++ G+
Sbjct: 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76
Query: 694 -AYVSQTAWI-QTGSIRENILFGSPMDSHQYQETLERCSLIKD--LELLPYGDNTEIGER 749
AYV Q I ++ EN+L G + + + I D EL P +G R
Sbjct: 77 IAYVPQGREIFPRLTVEENLLTG--LAALPRRSR-----KIPDEIYELFPVLKEM-LGRR 128
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV------DAHTASSLFNDYVMEALSGK 803
G +LSGGQ+Q++ +ARAL + LLD+P + D G
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-----EGGM 183
Query: 804 VVLLVTHQVDF-LPAFDSVLLMSDGEI 829
+LLV +DF D +M G +
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRV 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683
+N+ + +++ F +E+ S + +S + G+ V+I G+ GSGKST I G
Sbjct: 1 MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF 60
Query: 684 QGTIQVYGKTAYVSQTAW----------------IQTGSIRENILFGSPMDSHQYQETLE 727
+G +++ G+ ++ W ++ +++ FG +E ++
Sbjct: 61 EGKVKIDGEL-LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK 119
Query: 728 RCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
R D LL LSGGQKQR+ +A + +I +LD+ S +D
Sbjct: 120 RV----DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175
Query: 788 ASSLFNDYVMEALSGK---VVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
+ V+ + K VL +TH +D + D +L+M GEI++ A +L A+S++
Sbjct: 176 RQEIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSED 233
Query: 845 FQEL 848
E+
Sbjct: 234 MVEI 237
|
Length = 277 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-14
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 48/231 (20%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYGKTAY-VSQTA 700
+S E++ G+ + I GE GSGKS L AI+G +P G I GK +S+
Sbjct: 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81
Query: 701 WIQTGSIREN---ILFGSPMDS--------HQYQETLERCSLIKD--------LELLPYG 741
+ IR ++F PM S Q E L +ELL
Sbjct: 82 LRK---IRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL--- 135
Query: 742 DNTEIG----ERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS--- 789
+G ER + LSGG +QR+ +A AL + + + D+P +A+D +
Sbjct: 136 --ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL 193
Query: 790 SLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLL 839
L + E G ++L+TH + + D V +M G I+ P ++
Sbjct: 194 DLLKELQRE--KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 34/226 (15%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAY--------VSQTA 700
++ V G+KVA+ G GSGKST+L ++ P +G IQV G+ Y +
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 701 WIQTGSIRENI--------LFG----------SPMDSHQYQETLERCSLIKDLELLPYGD 742
+R I LF +P+ ++ L+++ D
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138
Query: 743 NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG 802
+ LSGGQ+QR+ +ARAL + L D+ SA+D + N V+ L+
Sbjct: 139 KAD--HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN--VIRRLAS 194
Query: 803 K---VVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKE 844
+ +LLVTH++ F F D V G I+ ++ KE
Sbjct: 195 EHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKE 240
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I +K+ +F ++E K T+ ++S V+ G+ ++I G GSGKST + I G + G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 688 QVYG-------------KTAYVSQTAWIQ--TGSIRENILFGSPMDSHQYQETLERCSLI 732
+ G K V Q Q ++ +++ FG ++E ER +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN-- 122
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA------- 785
+ LEL+ D E LSGGQKQR+ +A A+ I +LD+ S +D
Sbjct: 123 EALELVGMQDFKE--REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845
T + +DY M +S +TH +D + D VL+M +G++ + +L + +
Sbjct: 181 KTIKGIRDDYQMTVIS------ITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234
Query: 846 QEL 848
+L
Sbjct: 235 LQL 237
|
Length = 279 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------- 691
+ + ++++S V GQ+V + G GSGKSTLL+A+L + T+G IQ+ G
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTL 1287
Query: 692 ---KTAY--VSQTAWIQTGSIRENILFGSPMDSHQYQE---TLERCSLIKDLELLPYGDN 743
+ A+ + Q +I +G+ R+N+ P + +E E L +E P +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNL---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
+ + G LS G KQ + LAR++ A I LLD+P + +D T + + ++ S
Sbjct: 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL-QIIRKTLKQSFSNC 1403
Query: 804 VVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSA 851
V+L H+V+ L L++ + + +LL + F++ +SA
Sbjct: 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 54/241 (22%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI----------QVYG----K 692
R++S ++ PG+ + I GE GSGK+TLL I G + GT+ +Y +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG----------- 741
+ +T W G + +N G M ER I YG
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARH---YGNIRAEAQDWLE 136
Query: 742 ----DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN---D 794
D I + SGG +QR+Q+AR L + +D+P +D + L +
Sbjct: 137 EVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196
Query: 795 YVMEALSGKVVLLVTHQ--VDFLPAFDSVLLMSDGEILRA-----------APYHQLLAS 841
V E G V++VTH V L A D +++M G+++ + PY QLL S
Sbjct: 197 LVREL--GLAVVIVTHDLAVARLLA-DRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLVS 253
Query: 842 S 842
S
Sbjct: 254 S 254
|
Length = 258 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 65/218 (29%), Positives = 91/218 (41%), Gaps = 67/218 (30%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ + L + GQ VA+ G G GKSTLL + G + G ++ TA +++
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG--ELLAGTAPLAE------- 78
Query: 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG---DNTEIGERG------------ 750
RE+ + +D LLP+ DN +G +G
Sbjct: 79 -AREDTRL-----------------MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAA 120
Query: 751 -----------VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT-------ASSLF 792
LSGGQKQR+ LARAL + LLD+P A+DA T SL+
Sbjct: 121 VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180
Query: 793 NDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
+ G VLLVTH V A D VLL+ +G+I
Sbjct: 181 QQH------GFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-14
Identities = 100/377 (26%), Positives = 154/377 (40%), Gaps = 66/377 (17%)
Query: 952 NVSTLRLIVVYL----LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFY 1007
+V L ++ V + L G + LF S V LG R L+ LL P+ ++
Sbjct: 179 SVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGAR----LYRHLLG----LPLGYF 230
Query: 1008 DSTPLGRILSRV-----------SSDLSIVDLDIPFSLIFAVGATTNACSNLGVL----A 1052
+S +G ++RV S L++V LD+ F ++F L V+
Sbjct: 231 ESRRVGDTVARVRELEQIRNFLTGSALTVV-LDLLFVVVF-----------LAVMFFYSP 278
Query: 1053 VVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANH--LAESIAGAMTIRA 1110
+T V+ S+ L FV R+ + A L ES+ G TI+A
Sbjct: 279 TLTGVVIG-SLVCYALL-----SVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKA 332
Query: 1111 FEEEDRFFAK-NLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAA---FCMVLLPP 1166
E +F + + L A+ F + N Q +E + ++ A F L+
Sbjct: 333 TATEPQFQNRWDRQLAAYVAASFRVTNLGN-IAGQAIELIQK--LTFAILLWFGAHLVIG 389
Query: 1167 GTFTPG---FIGMALSYGLSLNSSLVMSIQN-QCTLANYIISVERLNQYMHVPSEAPEVV 1222
G +PG M L Q+ Q T I++ERL ++ P+E
Sbjct: 390 GALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTG----IALERLGDILNSPTEPRSAG 445
Query: 1223 EDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRG 1282
P G + +++ RY PDSP VL ++ + G IGIVG +GSGK+TL
Sbjct: 446 LAALPELR----GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTK 501
Query: 1283 ALFRLIEPARGKILVDG 1299
L RL P G++LVDG
Sbjct: 502 LLQRLYTPQHGQVLVDG 518
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 26/221 (11%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI----------QVYG 691
+ + +SL V+ G+ V + G G+GK+T I+G V G I ++
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 692 KT----AYVSQTAWIQTG-SIRENI---LFGSPMDSHQYQETLERCSLIKDLELLPYGDN 743
+ Y+ Q A I ++ ENI L + + +E LE L+++ + +
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE--ELLEEFHITHLRKS 129
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
+ +LSGG+++R+++ARAL + LLD+PF+ VD + + G
Sbjct: 130 -----KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184
Query: 804 VVLLVTHQV-DFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
VL+ H V + L D ++ +G++L ++ A+
Sbjct: 185 GVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-14
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 38/212 (17%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILG---------EVPHTQGTIQVYG------- 691
N SL++ G+ + G GSGKSTLL A+ G V G++ V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 692 --KTAYVS----QTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGD--N 743
+T VS Q A + ++ EN+ FG M E +R + LEL+ +
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVD--EQLELVGLAQWAD 159
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-- 801
+ GE LSGG +QR+ LARA +A I L+D+PFSA+D + L D ++E S
Sbjct: 160 RKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQL-QDELLELQSKL 214
Query: 802 GKVVLLVTHQVDFLPAF---DSVLLMSDGEIL 830
K ++ V+H +D A + + +M G I+
Sbjct: 215 KKTIVFVSHDLD--EALKIGNRIAIMEGGRII 244
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-14
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------- 693
K + +++L + G+ AI GE GSGKSTLL I G + + G+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 694 ---------AYVSQT-AWIQTGSIRENI---LFGSPMDSHQYQ----ETLERCSLIKDLE 736
Y+ Q A I+ ++ EN+ L + + + E LE+ L L+
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
Y LSGG++QR+ LARA+ + + L D+P ++D D V
Sbjct: 130 QKIY-----------ELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEV 173
Query: 797 MEALS-----GKVVLLVTH 810
++ L GK +++VTH
Sbjct: 174 LDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (180), Expect = 6e-14
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 31/249 (12%)
Query: 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
I + +++++ +S + + +I LEV+ G A+ G GSGKSTLL + G + T+G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 686 TIQVYGKTAYVSQTAWIQTGSIREN--ILFGSPMDSHQYQETL---------------ER 728
+ V G S + + +R+ ++F P +S ++ET+ E+
Sbjct: 62 KVTV-GDIVVSSTSKQKEIKPVRKKVGVVFQFP-ESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 729 CSLIKDLELLPYGDNTEIGERG-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
I +L G E E+ LSGGQ +R+ +A L + ++ +LD+P + +D
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
Query: 788 ASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQ 846
+ + SG+ V+LVTH +D + + D V L+ G I+ S FQ
Sbjct: 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG------TPSDVFQ 233
Query: 847 EL--VSAHK 853
E+ + AH+
Sbjct: 234 EVDFLKAHE 242
|
Length = 288 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-14
Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 31/206 (15%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--QGTIQVYG---KTAYVSQT--- 699
I LEVRPG+ V +CGE G+GKSTL+ + G PH G I G K + + T
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78
Query: 700 ---------AWIQTGSIRENILFGS----PMDSHQYQETLERC-SLIKDLELLPYGDNTE 745
+ S+ ENI G+ P Y R +L+++L+L
Sbjct: 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP 138
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVV 805
+G+ G GGQ+Q +++A+AL + A + +LD+P S++ L + ++ L V
Sbjct: 139 VGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDLKAHGV 192
Query: 806 --LLVTHQVDFLPAF-DSVLLMSDGE 828
+ ++H+++ + A D++ ++ DG+
Sbjct: 193 ACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-13
Identities = 100/461 (21%), Positives = 191/461 (41%), Gaps = 69/461 (14%)
Query: 876 EIKKGHVEKQFE-----VSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSH 930
+I K +++ +S + +E+E + P I Q K L +I +
Sbjct: 111 KISKEDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLI--TRQKK--LIVNIVIAAI 166
Query: 931 LTFVIGQILQNSWLAANVE----NPNVSTLRLIVVYLLIGFV-STLFLMSRSLSSVVLGI 985
+ +I I + +L ++ + + TL +I + L+I ++ + + VLG
Sbjct: 167 IVTLI-SIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225
Query: 986 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVD----------LDIPFSLI 1035
R S + + LF PMSF+ + G I+SR + SI+D LD+ ++
Sbjct: 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDM--WIL 283
Query: 1036 FAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVA 1095
VG L ++ + + +SIPV + I L + T +L +++
Sbjct: 284 VIVGLF------LVRQNMLLFLLSLLSIPVYAVIIIL---FKRTFNKLNHDAMQANAVLN 334
Query: 1096 NHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHS---FAANEWLIQRLETLSAT 1152
+ + E + G TI++ E ++K ID+ + + + + Q ++ ++
Sbjct: 335 SSIIEDLNGIETIKSLTSEAERYSK----IDSEFGDYLNKSFKYQKADQGQQAIKAVTKL 390
Query: 1153 VISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMS-----IQN----QCTLANYII 1203
+++ +V+L G + + L+ G + + ++S ++N Q L +
Sbjct: 391 ILN-----VVILWTGAYL--VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARV 443
Query: 1204 SVERLNQYMHVPSE---APEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
+ RLN+ V SE + E N G + I D+ Y S +L IS T
Sbjct: 444 ANNRLNEVYLVDSEFINKKKRTELNNL------NGDIVINDVSYSYGYGSN-ILSDISLT 496
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL 1301
+ K IVG +GSGK+TL L + G+IL++G
Sbjct: 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 32/211 (15%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TAYVSQTAWIQT 704
+++S EVR G+ V I G G+G+S L+ AI G G I + GK +S +
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334
Query: 705 G-----------------SIRENILFGSPMDSHQYQETLERCS--------LIKDLELLP 739
G S+ EN++ G + LI++ ++
Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394
Query: 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA 799
+ +LSGG +Q++ LAR L + D+ + P +D + +
Sbjct: 395 PSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450
Query: 800 LSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
+GK VLL++ +D + D + ++ +G I
Sbjct: 451 DAGKAVLLISEDLDEILELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY----- 695
+ ++S+++ Q A+ G G GKST L I L + +G + GK Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 696 ----------VSQTAWIQTGSIRENILFG-----SPMDSHQ-YQETLERCSLIKDLELLP 739
V Q SI +N+ +G D + +E+L R +L ++
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV---- 170
Query: 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA 799
++ G++LSGGQ+QR+ +ARA+ D ++ L+D+P SA+D A+S D + E
Sbjct: 171 ---KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP-VATSKIEDLIEEL 226
Query: 800 LSGKVVLLVTH 810
V++VTH
Sbjct: 227 AEEYTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-13
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 38/214 (17%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-----VYGKTAYVS---- 697
++S VRPG+ + G G+GK+TL I G + T G++ + G +
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
Query: 698 -----QTAWI-QTGSIRENIL----------FGSPMDSHQYQETLERC-SLIKDLELLPY 740
Q + ++ EN++ + +E ER L++ + L
Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF---SAVDAHTASSLFNDYVM 797
D LS GQ++R+++ARAL D + LLD+P + + + L +
Sbjct: 137 AD-----RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-- 189
Query: 798 EALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
G VLLV H +D + + D V ++ G ++
Sbjct: 190 -RERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 24/201 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGK--TAYVSQT--- 699
+++ISL V+ G+ V + G G GK+TLL I G E T GTI G+ T Q
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQKRDY 78
Query: 700 -------AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752
A ++ +NI +G E ER + + DL LP + G+
Sbjct: 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ---- 134
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLLVT 809
LSGGQ+QR+ LARAL + LLD+P SA+DA L + + L ++ ++VT
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE--IRQLQRRLGVTTIMVT 192
Query: 810 H-QVDFLPAFDSVLLMSDGEI 829
H Q + L D +++M+ G I
Sbjct: 193 HDQEEALSMADRIVVMNHGVI 213
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 38/212 (17%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
+S ++ G+ + + GE G GKSTL ILG T G I
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-------------------- 70
Query: 708 RENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGVN-LSGGQKQRIQLAR 765
+ G + +E ER + + LE + G E R + LSGGQ+QRI +AR
Sbjct: 71 ---LFEGKDITKLSKEERRER---VLELLEKV--GLPEEFLYRYPHELSGGQRQRIGIAR 122
Query: 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLLVTHQVDFLPAF-DSV 821
AL + + + D+P SA+D + + N +++ L ++ L ++H + + D +
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISHDLSVVRYISDRI 180
Query: 822 LLMSDGEILRAAPYHQLLASSKE--FQELVSA 851
+M G+I+ P ++ ++ + L+SA
Sbjct: 181 AVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA 212
|
Length = 268 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 28/210 (13%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------- 692
+ + ++SLEV G+ V + G G+GK+T I+G V G I + +
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75
Query: 693 -----TAYVSQTAWIQTG-SIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDN 743
Y+ Q A I ++ +NI+ + D + + E +L+++ + D+
Sbjct: 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS 135
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--S 801
+ +LSGG+++R+++ARAL + LLD+PF+ VD + +++ L
Sbjct: 136 -----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI--QRIIKHLKDR 188
Query: 802 GKVVLLVTHQV-DFLPAFDSVLLMSDGEIL 830
G VL+ H V + L D ++SDG++L
Sbjct: 189 GIGVLITDHNVRETLDICDRAYIISDGKVL 218
|
Length = 243 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 65/241 (26%), Positives = 98/241 (40%), Gaps = 54/241 (22%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI----------QVY----GK 692
R++S ++ PG+ + I GE GSGKSTLL + G + GT ++Y +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG----------- 741
+ +T W G + +N G M ER I YG
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARH---YGNIRATAQDWLE 133
Query: 742 ----DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN---D 794
D T I + SGG +QR+Q+AR L + +D+P +D + L +
Sbjct: 134 EVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 795 YVMEALSGKVVLLVTHQ--VDFLPAFDSVLLMSDGEILRA-----------APYHQLLAS 841
V + G V++VTH V L A +L+M G ++ + PY QLL S
Sbjct: 194 LVRDL--GLAVIIVTHDLGVARLLA-QRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVS 250
Query: 842 S 842
S
Sbjct: 251 S 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 4e-13
Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 30/240 (12%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL---GEVP--H 682
I I++ S + E K ++N+++++ Q AI G G GK+TLL +I +P
Sbjct: 4 IEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 683 TQGTIQVYGKTAY---------------VSQTAWIQTGSIRENILFGSPMDSHQYQETLE 727
+G I G+ Y V Q SI +N+ FG + + + L+
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 728 RCSLIKDLELLPYGDN--TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
R + + L+ D +E+ + G LSGGQ+QR+ +ARAL + ++ LLD+P SA+D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 786 HTASSLFNDYVMEALSGK-VVLLVTHQV-DFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
+ + ++E LS +++VTH + + D + M GE++ P +++ K
Sbjct: 180 IATQRI--EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK 237
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-13
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 46/234 (19%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYG------------- 691
++ +SL+ G ++I G GSGKST L I E P ++G+I V G
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQL 79
Query: 692 KTAYVSQTAWIQTG--------------SIRENILFGSPMDSHQYQETLERCSLIKDLEL 737
K A +Q ++T ++ EN++ +P+ + R +K
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVLGLSKQEARERAVK---- 134
Query: 738 LPYGDNTEIGERG-----VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
Y I ER V+LSGGQ+QR+ +ARAL + ++ L D+P SA+D +
Sbjct: 135 --YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 793 NDYVMEALS--GKVVLLVTHQVDFLPAFDS-VLLMSDGEILRAAPYHQLLASSK 843
+M+ L+ GK +++VTH++ F S V+ + G+I QL + +
Sbjct: 193 R--IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQ 244
|
Length = 257 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 45/237 (18%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYGKT---A 694
++ IS ++ G+ +A+ GE GSGKS +ILG +P H G+I G+ A
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82
Query: 695 YVSQTAWIQTGSIRENILFGSPMDS--------HQYQETLE-------RCSLIKDLELLP 739
Q ++ I ++F PM S Q E L + + LELL
Sbjct: 83 SERQLRGVRGNKI--GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL- 139
Query: 740 YGDNTEIG----ERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS- 789
+G E+ ++ LSGGQ+QR+ +A AL + D+ + D+P +A+D +
Sbjct: 140 ----ELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195
Query: 790 --SLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
L + ++A G +L +TH + + F D V +M GEI+ L A+ +
Sbjct: 196 ILDLLKE--LQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250
|
Length = 534 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKT-----AY------ 695
+SL+++ G+ + G G GK+TLL I G E P T G I + GK +
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHKRPVNT 76
Query: 696 VSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
V Q A ++ ENI FG + E ER + DL L N + + LS
Sbjct: 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQ----LS 132
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKVVLLVTH- 810
GGQ+QR+ +ARAL + + LLD+P A+D + ++ L G + VTH
Sbjct: 133 GGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM--QLELKRLQKELGITFVFVTHD 190
Query: 811 QVDFLPAFDSVLLMSDGEI 829
Q + L D + +M+ G+I
Sbjct: 191 QEEALTMSDRIAVMNKGKI 209
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 5e-13
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 46/216 (21%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-AY-------VS 697
++ I+ + G+ VA+ G G+GKSTL G + T G + + G+ Y V
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 698 QTAWIQ---------TGSIRENILFGS-----PMDSHQ--YQETLERCSLIKDLELLPYG 741
+T I ++ E++ FG + + +E L+ + P+
Sbjct: 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH- 136
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
+LSGGQK+R+ +A L +I +LD+P S +D AS +M+ L
Sbjct: 137 ----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ-----IMKLLY 181
Query: 802 -----GKVVLLVTHQVDFLPAF-DSVLLMSDGEILR 831
G +++ TH VD +P + D V +MSDG+I++
Sbjct: 182 DLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217
|
Length = 275 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691
E + + L VR G V + G G+GK+TLL AI G + T GT+ V G
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 692 ------KTAYVSQTAWIQTG-SIRENILFG-----------SPMDSHQYQETLERCSLIK 733
+ A V Q + +R+ + G + D + +ER
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER----- 126
Query: 734 DLELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
+ +R V +LSGG++QR+ LARAL Q + LLD+P +++D +
Sbjct: 127 -------TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179
Query: 793 NDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS 841
GK + H +D + D ++L++DG + A P +L +
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229
|
Length = 402 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 38/232 (16%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV------YGKTAYVSQ---- 698
+S +R GQ +AI GE GSGKSTL + G + T G I + +G ++ S+
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 699 ------TAW--------IQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNT 744
T+ I +R N Q ETL L LP N
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHANY 145
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGK 803
L+ GQKQR+ LARAL I + D+ +++D S L N + ++ G
Sbjct: 146 YPH----MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI 201
Query: 804 VVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKE--FQELVSAH 852
+ VT + + D VL+M +GE++ +LAS + L+ +H
Sbjct: 202 SYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253
|
Length = 267 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQ 698
+ ++ IS + G+ V G G+GK+T L + G + T G ++V G + +
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR 89
Query: 699 TAWIQTGSIRENILFG---------SPMDSH------------QYQETLERCSLIKDLEL 737
+++ R ++FG +DS ++++ L+ S EL
Sbjct: 90 KKFLR----RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----EL 140
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN---D 794
L + + R LS GQ+ R ++A AL + +I LD+P +D ++ N +
Sbjct: 141 LDLEELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKE 198
Query: 795 YVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
Y E G VLL +H + + A VL++ G +L
Sbjct: 199 YNRE--RGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-13
Identities = 58/232 (25%), Positives = 89/232 (38%), Gaps = 44/232 (18%)
Query: 628 ISIKSASFSWEESSSK-PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I + S + + + ++ + L V+ G+ VAI G GSGKSTLLA + G + G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 687 IQVYGK-----------------TAYVSQT-AWIQTGSIRENILF-------GSPMDSHQ 721
+++ G+ +V Q+ I + EN+ S
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG 126
Query: 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781
+ LE L K L P LSGG++QR+ LARA D+ D+P
Sbjct: 127 AKALLEAVGLGKRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTG 175
Query: 782 AVDAHTASS----LFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+D T LF + G ++LVTH D L + G +
Sbjct: 176 NLDRATGDKIADLLFA---LNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 7e-13
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692
+R+I++ + G+KV I G G+GKS+L + +G I + G K
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQE---TLERCSLIKDLELLPYGDNTEIGER 749
+ Q + +GS+R N+ P + +E LE L + LP + E E
Sbjct: 1362 ITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
G NLS GQ+Q + LARAL + I +LD+ +AVD T +L + VL +
Sbjct: 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET-DNLIQSTIRTQFEDCTVLTIA 1477
Query: 810 HQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845
H+++ + + V+++ GE+ LL F
Sbjct: 1478 HRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 7e-13
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
+++L ++ G+ +A+ GE GSGKS AILG +P G Q G+ + + SI
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP--PGLTQTSGEILLDGRP--LLPLSI 59
Query: 708 REN---ILFGSPMDS--------HQYQETLE---------RCSLIKDLELLPYGDNTEIG 747
R + +P + + ETL R +++ LE + D E+
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL 119
Query: 748 ER-GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKV 804
++ LSGG QR+ +A AL + + D+P + +D + + E G
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV-VNQARVLKLLRELRQLFGTG 178
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS--SKEFQELVSAH 852
+LL+TH + + D V +M DG I+ ++ + + ++L+SAH
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ +S V+PG+ + G G+GK+T L + G + G V G V + A +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VKEPAEARRR 79
Query: 706 --------------SIRENILFGSPMDSHQYQETLERCS-LIKDLELLPYGDNTEIGERG 750
+ REN+ + + + + E R L L + D R
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----RRV 134
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVT 809
S G +Q++ +ARAL D + LLD+P + +D A+ +++ + + GK +L T
Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIRQLRALGKCILFST 193
Query: 810 HQVDFLPAF-DSVLLMSDGEIL 830
H + + D V+++ G ++
Sbjct: 194 HIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-13
Identities = 65/315 (20%), Positives = 113/315 (35%), Gaps = 43/315 (13%)
Query: 1013 GRILSRVSSDLSIVD-----LDIPFSLIFAVGA-TTNACS----NLGVLAVVTWQVLFVS 1062
G +L+R+ +D+ +D + P + + A T S L +L + +L +
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 1063 IPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 1122
IP +F Y K L +L + + + G + F ED +
Sbjct: 175 IPTLF--------YRAGRKFGAHLAQGRAAL-RSQFTDWVQGQAELLIFGAEDAYRTALE 225
Query: 1123 DLIDTNASPFFHSFAANEWLIQRLETLS-ATVISSAAFCMVLL--------PPGTFTPGF 1173
S+ + R LS A ++ A ++ L G
Sbjct: 226 ATEA--------SWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPG 277
Query: 1174 IGMALSYGLSLNSSLV-MSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWP 1232
+AL + + ++ L I S RLN + + PEV +
Sbjct: 278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLND---ILDQKPEVTFPDEQTATTG 334
Query: 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
++ ++ Y LK + T G K+ I+GR+GSGK+TL L +P +
Sbjct: 335 QALELR--NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392
Query: 1293 GKILVDGK-LAEYDE 1306
G I ++G +A DE
Sbjct: 393 GSITLNGVEIASLDE 407
|
Length = 573 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
RY+PD P++L IS + G +GIVGR+GSGK+TL + R P G++LVDG
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG 63
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 42/273 (15%)
Query: 625 NRAISIKSA-------SFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
N ++IK F + S +++IS E+ G+ V G G+GKST L +
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 678 GEVPHTQGTIQVYGK------TAYVSQTAWIQTG-------------SIRENILFGSPMD 718
G + T G ++V GK Y+ + G S+ L D
Sbjct: 72 GLLLPTSGKVRVNGKDPFRRREEYLRSIG-LVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130
Query: 719 SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
+ E L+ + I DLE + LS GQ+ R +LA AL + LD+
Sbjct: 131 DE-FAERLDFLTEILDLE-------GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182
Query: 779 PFSAVDAHTASSLFNDYVME--ALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPY 835
P +D + +++ ++ E VLL TH D + D VLL+ G+++
Sbjct: 183 PTVGLDVNAQANIRE-FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241
Query: 836 HQLLAS---SKEFQELVSAHKETAGSERLAEVT 865
QL KEF + K + L +VT
Sbjct: 242 AQLQEQFGPYKEFSVELKQAKSLSQLALLGDVT 274
|
Length = 325 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 23/230 (10%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
A+ + SF + ++ + ++S VRPG+ VA+ G G+GKSTL + + +G
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 687 IQVYG------------KTAYVSQTAWIQTG-SIRENILFGSPMDSHQYQETLERCSLIK 733
I V G + V Q + S+R+N+ + + + E R
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARI---- 113
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
L G ++ L+GG ++R+++ARAL + LLD+P +D + +++
Sbjct: 114 AELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-T 172
Query: 794 DYVME--ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841
+V G VL TH VD + A D ++++ G +L +L +
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-12
Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQ 698
E S +P + +++ Q A G G+GK+T L+ + G +P T GT+ V GK +
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL 998
Query: 699 TAWIQTG-------------SIRENILFGSPMDSHQYQET-LERCSLIKDLELLPYGDNT 744
A Q+ ++ E+ILF + + ++E LE ++++D G +
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----GLHH 1053
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
+ E +LSGG ++++ +A A DA + +LD+P S VD ++ S++ D +++ SG+
Sbjct: 1054 KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRT 1112
Query: 805 VLLVTHQVD 813
+++ TH +D
Sbjct: 1113 IIMSTHHMD 1121
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 36/272 (13%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAW 701
K + NIS EV PG+ + G G+GK+T ILG + T+G I G +SQ
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP--LSQEIK 71
Query: 702 IQTG------------SIRENILFGSPMDSHQYQETLERCS-LIKDLELLPYGDNTEIGE 748
+ G ++ + + + + + E ++ ++ LE++ +I E
Sbjct: 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK-KTKKIKE 130
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
LS G +Q+IQ A+ + ++ +LD+PFS +D L + G ++
Sbjct: 131 ----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186
Query: 809 THQVDFLPAF-DSVLLMSDGE---------ILRAAPYHQLLASSKEFQELVSAH----KE 854
+H+++ + D +L++ G+ I R+ +L+ S E ++ K
Sbjct: 187 SHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKI 246
Query: 855 TAGSERLAEVTPSQKSGMPAKEIKKGHVEKQF 886
T + + ++ A+EI + +
Sbjct: 247 TETKDGSWRIQIENETV--AREIFQEVARDGY 276
|
Length = 300 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-12
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 41/208 (19%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-AYVSQTAWIQTG- 705
+IS + R GQ A+ GE G+GKSTLL + G G+I + G+ + S TA + G
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
Query: 706 -------------SIRENILFGS-PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
++ EN+ G P + ++ + LL Y ++ GV
Sbjct: 82 AIIYQELHLVPEMTVAENLYLGQLP----------HKGGIV-NRRLLNYEAREQLEHLGV 130
Query: 752 N---------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-- 800
+ LS GQ+Q +++A+AL ++A + D+P S++ A LF V+ L
Sbjct: 131 DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRA 188
Query: 801 SGKVVLLVTHQVDFLPAF-DSVLLMSDG 827
G+V+L V+H+++ + A D++ + DG
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 60/239 (25%), Positives = 98/239 (41%), Gaps = 36/239 (15%)
Query: 631 KSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY 690
++ P + N+SL + G+ V + G G GKSTL +LG QGT+
Sbjct: 13 RTGGLFGA-KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR 71
Query: 691 GKTAYV-------------------SQTAWIQTGSIRENILFGSPMD---SHQYQETLER 728
G+ Y S +A ++R+ I G P+ S E R
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKAR 129
Query: 729 CS-LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
+ L+ + L + + + LSGGQ QRI +ARAL + +LD+ S +D
Sbjct: 130 IAELLDMVGL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL 185
Query: 788 ASSLFNDYVMEAL---SGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASS 842
+ + ++ L G L +TH + + +F V +M G+I+ QLL+
Sbjct: 186 QAVILE--LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFK 242
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 54/226 (23%), Positives = 111/226 (49%), Gaps = 28/226 (12%)
Query: 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683
++ I ++ F +++ + ++ +SL + G K A+ G G+GKSTLL + G
Sbjct: 1 MDNIIEVEDLHFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58
Query: 684 QGTIQVYGKTAYVSQTAWIQ---------------TGSIRENILFGSPMDSHQYQETLER 728
+G ++V G+ W++ + ++ +++ FG P++ ++ +ER
Sbjct: 59 RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVER 117
Query: 729 CSLIKDLELLPYGDNTEIGERG-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
+ E L + ++ +LS GQK+R+ +A L D D+ +LD+P + +D
Sbjct: 118 ----RVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 788 ASSLFNDYVMEALS--GKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
+L +++ L GK V++ TH VD + D V+++ +G +L
Sbjct: 174 QETLME--ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217
|
Length = 274 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 40/218 (18%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------- 692
+ +R++S + G+ V + G G+GKSTLL I GE T+G I V G
Sbjct: 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR 72
Query: 693 --------TAYVSQT-AWIQTGSIRENILF-----GSPMDS--HQYQETLERCSLIKDLE 736
V Q + ++ EN+ G P + E L+ L
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKAR 132
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
LP LSGG++QR+ +ARA+ + L D+P +D + + +
Sbjct: 133 ALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR--L 179
Query: 797 MEALS--GKVVLLVTHQVDFLPAFDS-VLLMSDGEILR 831
E ++ G VL+ TH ++ + VL + DG ++R
Sbjct: 180 FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 2e-12
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I +++ S ++ K +++ISL + PG ++ + G G+GKSTLL I GE+ +G +
Sbjct: 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 688 QVYG--KTAYVSQ 698
K Y Q
Sbjct: 58 TWGSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 25/246 (10%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
+E+ N I K+ SF ++ S + T++++S + GQ +I G GSGKST+ ++G
Sbjct: 1 MEDKNSIIVFKNVSFQYQ-SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59
Query: 681 PHTQGTI-------------QVYGKTAYVSQTAWIQ-TGSI-RENILFGSPMDSHQYQET 725
G I ++ V Q Q GSI + ++ FG + Y E
Sbjct: 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEM 119
Query: 726 LERCS-LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
R S +K +++L D LSGGQKQR+ +A L + + +LD+ S +D
Sbjct: 120 HRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 785 AHTASSLFNDYVMEALSGKVVLL--VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842
+L + V + S + + +TH + D V++M+ G + + ++ +
Sbjct: 175 PDARQNLLD-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 843 KEFQEL 848
+E +
Sbjct: 234 EELTRI 239
|
Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 38/243 (15%)
Query: 628 ISIKSASFSWEESSSKPT-MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQG 685
I + + + + + + + N+SL V GQ + G G+GKSTL+ + L E P T G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSG 60
Query: 686 TIQVYGKTAYVSQTAWIQTGSIRENI--------------LFGS---PMD-SHQYQETLE 727
++ V G+ ++ + + R I +FG+ P++ + ++ ++
Sbjct: 61 SVIVDGQD--LTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK 118
Query: 728 RCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
R + + L L+ GD + NLSGGQKQR+ +ARAL + + L D+ SA+D T
Sbjct: 119 R-KVTELLALVGLGDKHD--SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 788 ASSLFNDYVMEALS------GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLA 840
S ++E L G +LL+TH++D + D V ++S+GE++ ++ +
Sbjct: 176 TQS-----ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
Query: 841 SSK 843
K
Sbjct: 231 HPK 233
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------- 692
+ NIS +R G+ I G G GKSTLL + + T GT+ G+
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 693 ----TAYVSQTAWIQTGSIRENILFGSPMDSHQYQ---ETLERCSLIKDLELLPYGDNTE 745
+Y +QT + ++ +N++F +Q + + + DLE +
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIF-------PWQIRNQQPDPAIFLDDLE--RFALPDT 129
Query: 746 IGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT---ASSLFNDYVMEALS 801
I + + LSGG+KQRI L R L + LLD+ SA+D + + + YV E
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE--Q 187
Query: 802 GKVVLLVTHQVDFLPAFDSVLLMS 825
VL VTH D + D V+ +
Sbjct: 188 NIAVLWVTHDKDEINHADKVITLQ 211
|
Length = 225 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 32/212 (15%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
NIS E+ G VA+ G GSGKSTL+ + + GTI + G +T +
Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI-TPETGNKNLKKL 83
Query: 708 RENI--LFGSPMDSHQYQETLERCSLIKDLELLP--------------------YGDNTE 745
R+ + +F P ++ ++ T+ +KD+E P G + +
Sbjct: 84 RKKVSLVFQFP-EAQLFENTV-----LKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED 137
Query: 746 IGERG-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
+ + LSGGQ +R+ +A + + +I LD+P + +D + + +G
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEILR-AAP 834
V+LVTH +D + + D VL++ G++++ A+P
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-12
Identities = 77/423 (18%), Positives = 139/423 (32%), Gaps = 86/423 (20%)
Query: 922 FFSIASLSHLTFVIGQILQNSWLAANV-----ENPNVSTLRLIVVYLLIGFVSTLFLMSR 976
+ I++L + I I Q + LA + S L L+++ L+ + R
Sbjct: 1 WLVISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLR 60
Query: 977 SLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIF 1036
+ SL +L+ L + +F P G + I L+ ++
Sbjct: 61 ERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALE--GIEQLEPYYARYL 118
Query: 1037 AVGATTNACSNLGVLAVVTWQ------VLFVSIPVIFLAI--------RLQRYYFVTAKE 1082
+ A L +L + + +L ++ P+I L + F
Sbjct: 119 PQMFLS-AIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSA--- 174
Query: 1083 LMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPF---------- 1132
L RL+G H + + G T+RAF + + I ++ F
Sbjct: 175 LARLSG--------HFLDRLRGLETLRAFGRTEATEER----IRKDSEDFRKATMSVLRI 222
Query: 1133 -FHSFAANEWLIQRLETLS-ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVM 1190
F S A E+ LS A V F ++ T G + L+
Sbjct: 223 AFLSSAVLEFFA----YLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA----------- 267
Query: 1191 SIQNQCTLANYIISVERLNQYMHVP-------------SEAPEVVEDNRPPPNWPVVGKV 1237
+ + L + H E+P + +
Sbjct: 268 --------PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319
Query: 1238 DICDLQIRYR-PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+I + +R PD L ++ T + G +VG +G+GK+TL L + P +G+I
Sbjct: 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 1297 VDG 1299
V+G
Sbjct: 380 VNG 382
|
Length = 559 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 39/231 (16%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQG 685
+I + + + + + +I+L+ G+ + + G G+GKS+LL + L E+P + G
Sbjct: 2 SIQLNGINCFY---GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS-G 57
Query: 686 TIQVYGKTAYVSQTAWIQTG-SIRENI------------------LFGSPM------DSH 720
T+ + G S+T + +R N+ L +P
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQ 117
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
+ L+K L L PY D + +LSGGQ+QR+ +ARAL + + L D+P
Sbjct: 118 ALARAEK---LLKRLRLKPYADRYPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDS-VLLMSDGEIL 830
+A+D + + + A +G ++VTH+V+ S V+ M +G I+
Sbjct: 170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220
|
Length = 242 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 58/209 (27%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI--LGEV-PH--TQGTIQVYGKTAY 695
+ K + ++SL+ P + A+ G GSGKSTLL +I + ++ P G+I G Y
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 696 VSQTAWIQTG---------------SIRENILFGSPM----DSHQYQETLERCSL----- 731
+T + SI EN+++G + D E +E+ SL
Sbjct: 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK-SLKGASI 134
Query: 732 ---IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
+KD + + + LSGGQ+QR+ +AR L I LLD+P SA+D +A
Sbjct: 135 WDEVKD----------RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 789 S-------SLFNDYVMEALSGKVVLLVTH 810
L +DY M LLVT
Sbjct: 185 GKIEETLLGLKDDYTM--------LLVTR 205
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 35/200 (17%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGKTAYVSQTAWIQT 704
N++ + G+ V + G G GKSTLL+ ++G + G + + + + A Q
Sbjct: 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79
Query: 705 G------------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV- 751
G S+ +N+LF P G G
Sbjct: 80 GILFQDALLFPHLSVGQNLLFALPATLKGNAR-----------RNAANAALERSGLDGAF 128
Query: 752 -----NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKV 804
LSGGQ+ R+ L RAL LLD+PFS +D F +V + +G
Sbjct: 129 HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ-FRQWVFSEVRAAGIP 187
Query: 805 VLLVTHQVDFLPAFDSVLLM 824
+ VTH + +PA V+ M
Sbjct: 188 TVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-AYVSQTAWIQTG 705
++SLEVRPG+ V + G G+GK+TL I G + GT+ G+ + + G
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 706 SIR--------------ENIL------------FGSPMDSHQYQETLERC-SLIKDLELL 738
R EN+ G P + +E ER L++ + L
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140
Query: 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
D NLS GQ++R+++ARAL + LLD+P + ++ L + + E
Sbjct: 141 ELAD-----RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 799 --ALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
G +LL+ H + + D +++++ GE++
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 10/176 (5%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702
K + +ISL V+ G+ G G+GK+T + ILG + G I GK+ + A
Sbjct: 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR 72
Query: 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDL------ELLPYGDNTEIGERGV-NLSG 755
+ G++ E F + + E L + + + E+L + ++ V S
Sbjct: 73 RIGALIEAPGFYPNLTAR---ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL 129
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
G KQR+ +A AL + D+ +LD+P + +D L + G VL+ +H
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-12
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 26/167 (15%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--QGTIQVYGKT---AYVSQT--- 699
N+SL+VR G+ V++CGE G+GKSTL+ + G PH +G I G+ + + T
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82
Query: 700 ---------AWIQTGSIRENILFGSPMDSH---QYQETLERCS-LIKDLELLPYGDNTEI 746
A ++ S+ ENI G+ + Y R L+ L+L +
Sbjct: 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----DINP 137
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
NL GQ+Q +++A+AL + A + +LD+P +++ + L +
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD 184
|
Length = 506 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 29/210 (13%)
Query: 660 AICGEVGSGKSTLLAAI-----LGEVPHTQGTIQ-----VYGK----------TAYVSQT 699
AI G G GKST L AI L HT G + +YGK V Q
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 700 AWIQTGSIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755
SI +NI +G + D Q +E +E+ SL K D + + + LSG
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK-SLRKAALWDEVSDRLD--KNALGLSG 185
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815
GQ+QR+ +AR L + +I LLD+P SA+D A++ D + E +++VTH +
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDP-KATAKIEDLIQELRGSYTIMIVTHNMQQA 244
Query: 816 PAF-DSVLLMSDGEILRAAPYHQLLASSKE 844
D + +G ++ AP QL + K+
Sbjct: 245 SRVSDYTMFFYEGVLVEHAPTAQLFTNPKD 274
|
Length = 286 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 57/250 (22%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYG------------- 691
++ +SL+ G ++I G GSGKST L I E P G+I+V G
Sbjct: 22 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-AGSIRVNGEEIRLKRDKDGQL 80
Query: 692 KTAYVSQTAWIQTG--------------SIRENILFGSP-----MDSHQYQETLERCSLI 732
K A Q ++T ++ EN++ P + + E E+
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEK---- 135
Query: 733 KDLELLPYGDNTEIGERG----VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
Y I E+ +LSGGQ+QR+ +ARAL + ++ L D+P SA+D
Sbjct: 136 -------YLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188
Query: 789 SSLFNDYVMEALS--GKVVLLVTHQVDFLPAFDS-VLLMSDGEILRAAPYHQLLAS--SK 843
+ VM+ L+ G+ +++VTH++ F S V+ + G+I P Q+ + S
Sbjct: 189 GEVLK--VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSP 246
Query: 844 EFQELVSAHK 853
++ +S+ K
Sbjct: 247 RLKQFLSSLK 256
|
Length = 256 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 43/188 (22%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVP 681
AI ++ + + + K +++I+L++ + A+ G G GKSTLL + L
Sbjct: 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 682 HTQGTIQVYGKTAY---------------VSQTAWIQTGSIRENILFG---SPMDSHQYQ 723
+G + + GK Y V Q SI +N+ +G + +
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELD 123
Query: 724 ETLERC----SL---IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776
E +E +L +KD + + + LSGGQ+QR+ +ARAL ++ L+
Sbjct: 124 EIVESSLKKAALWDEVKD----------RLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173
Query: 777 DDPFSAVD 784
D+P SA+D
Sbjct: 174 DEPTSALD 181
|
Length = 253 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 5e-12
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 41/200 (20%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILG-----EVPHTQ-----GTIQVYGKTAYVSQ 698
+ L + G+ VA+ G GSGKSTLL + G + + T+Q G+ A +
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 699 TAWIQTG------------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
+ TG S+ EN+L G+ + ++ + + L T +
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ--ALTRV 140
Query: 747 G------ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
G +R LSGGQ+QR+ +ARAL Q A + L D+P +++D +A VM+ L
Sbjct: 141 GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR-----IVMDTL 195
Query: 801 ------SGKVVLLVTHQVDF 814
G V++ HQVD+
Sbjct: 196 RDINQNDGITVVVTLHQVDY 215
|
Length = 262 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-12
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDIC--DLQIRYRPDSPLVL 1254
L + ER+ + V A V E + P +GK + DL Y P +P VL
Sbjct: 296 QLTRVRAAAERIVE---VLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGY-PGAPPVL 351
Query: 1255 KGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
G+S G ++ I+G +GSGK+TL L L++P +G++ +DG
Sbjct: 352 DGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG 396
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 40/220 (18%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------------AY 695
+S EVR G+ + + G G+GKSTLLA + G G+IQ G+ AY
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76
Query: 696 VSQTAWIQTGSIRENILFGSPMDSH--QYQETLERCSLIKDL-ELLPYGDNTEIGERGVN 752
+SQ ++ F P+ + +Q R L+ D+ L D ++G
Sbjct: 77 LSQ---------QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD--KLGRSTNQ 125
Query: 753 LSGGQKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGK 803
LSGG+ QR++LA + Q + LLD+P +++D S+L D ++ AL G
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL--DRLLSALCQQGL 183
Query: 804 VVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLASS 842
+++ +H ++ L L+ G++L + ++L
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 29/182 (15%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------TAYVSQTA 700
+S + G+ + + G G GK+TLL + G + G ++ G
Sbjct: 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL 76
Query: 701 WI-------QTGSIRENILFGSPM-DSHQYQ--ETLERCSLIKDLELLPYGDNTEIGERG 750
++ S EN+ F + + Q + L L E LP
Sbjct: 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL-TGFEDLPAA--------- 126
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVT 809
LS GQ++R+ LAR A +++LD+P +A+D +L + L+ G +VLL T
Sbjct: 127 -QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTT 184
Query: 810 HQ 811
HQ
Sbjct: 185 HQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 27/202 (13%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694
R +S VR G+ + G G+GK+T + + + T G V G +
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
Query: 695 YVSQTAWIQ---TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
V Q + TG EN+ + + E ER ELL + E +R V
Sbjct: 77 IVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERI-----DELLDFVGLLEAADRLV 129
Query: 752 -NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV--MEALSGKVVLLV 808
SGG ++R+++AR+L ++ LD+P +D T + ++ +Y+ ++ G +LL
Sbjct: 130 KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLT 188
Query: 809 THQVDFLPAF-DSVLLMSDGEI 829
TH ++ D V ++ G I
Sbjct: 189 THYMEEAEQLCDRVAIIDHGRI 210
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 64/248 (25%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV------YGKTAYVSQT 699
++ +S +R GQ +AI GE GSGKSTL + G + T G + + +G +Y SQ
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ- 87
Query: 700 AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG----ERGVN--- 752
R ++F P S + +R S I D P NT++ E+ +
Sbjct: 88 --------RIRMIFQDPSTSLNPR---QRISQILD---FPLRLNTDLEPEQREKQIIETL 133
Query: 753 ----------------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
L+ GQKQR+ LARAL + + D+ +++D S L N +
Sbjct: 134 RQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--L 191
Query: 797 MEALSGK---VVLLVTHQVDFLPAF-DSVLLMSDGEILR--------AAPYHQLLASSKE 844
M L K + VT + + D VL+M GE++ A+P H+L
Sbjct: 192 MLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELT----- 246
Query: 845 FQELVSAH 852
+ L++ H
Sbjct: 247 -KRLIAGH 253
|
Length = 267 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 8e-12
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 28/190 (14%)
Query: 639 ESSSKPTMRNISLEVRPG-----QKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT 693
+ K T+ +LEV G + + I G G GK+T + + G + +G I++ T
Sbjct: 3 YPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT 62
Query: 694 -AYVSQTAWI-QTGSIRENILFGSPMD--SHQYQETLERCSLIKDLELLPYGDNTEIGER 749
+Y Q G++R+ +L D +H Y +T + K L++ I +R
Sbjct: 63 VSYKPQYIKADYEGTVRD-LLSSITKDFYTHPYFKT----EIAKPLQIEQ------ILDR 111
Query: 750 GVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT---ASSLFNDYVMEALSGKVV 805
V LSGG+ QR+ +A L +DADIYLLD+P + +D AS + + K
Sbjct: 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--EKTA 169
Query: 806 LLVTHQVDFL 815
+V H D +
Sbjct: 170 FVVEH--DII 177
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-12
Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 36/214 (16%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQTAWIQTG- 705
N++L ++ G V + G G GK+T+L + G E P T+G I + G+ V+ + IQ
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-TEGQIFIDGED--VTHRS-IQQRD 79
Query: 706 --------------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERG 750
S+ EN+ +G M +E +R +K+ LEL+ D +R
Sbjct: 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR---VKEALELV---DLAGFEDRY 133
Query: 751 VN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLL 807
V+ +SGGQ+QR+ LARAL + L D+P S +DA+ S+ + + E L
Sbjct: 134 VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM-REKIRELQQQFNITSLY 192
Query: 808 VTHQVDFLPAF---DSVLLMSDGEILRAAPYHQL 838
VTH D AF D+V++M+ G+I++ +L
Sbjct: 193 VTH--DQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 39/242 (16%)
Query: 608 PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGS 667
+ + + + ++ S S++ K + N+ L + G+ + + G G
Sbjct: 1 SKKLNKQPSSLSPL------VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGC 51
Query: 668 GKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQT--------------AWIQTGSIRENIL 712
GK+T+L I G E P G I + G+ ++ A ++ EN+
Sbjct: 52 GKTTVLRLIAGFETP-DSGRIMLDGQD--ITHVPAENRHVNTVFQSYALFPHMTVFENVA 108
Query: 713 FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDA 771
FG M E R +E L E +R LSGGQ+QR+ +ARA+
Sbjct: 109 FGLRMQKTPAAEITPRV-----MEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKVVLLVTH-QVDFLPAFDSVLLMSDG 827
+ LLD+ SA+D + N+ ++AL G + VTH Q + L D +++M DG
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNE--LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221
Query: 828 EI 829
I
Sbjct: 222 RI 223
|
Length = 375 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-11
Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 34/215 (15%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKTAYVSQTAWIQ 703
++ ISL++ G+ VAI G GSGKSTL+ ILG + P T GT +V G+ V+
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKP-TSGTYRVAGQD--VATLDADA 79
Query: 704 TGSIRENILFG---------SPMDSHQ-------YQETLERCSLIKDLELLP-YGDNTEI 746
+R FG S + + Q Y + L++ ELL G +
Sbjct: 80 LAQLRRE-HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRV 138
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-----S 801
+ LSGGQ+QR+ +ARAL + L D+P A+D+H+ + VM L
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG-----EEVMAILHQLRDR 193
Query: 802 GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYH 836
G V++VTH + V+ + DGEI+R P
Sbjct: 194 GHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 52/226 (23%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------- 692
K + +SLE+ G V + G G+GKSTLL AI G++ T G I + G
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 693 ----TAYVSQTAWIQTG---SIRENIL----------FGSPMDSH---QYQETLERCSLI 732
A V Q T +I EN+ S ++ ++E L R
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL--- 134
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
L L IG LSGGQ+Q + L A I LLD+ +A+D TA
Sbjct: 135 -GLGLENRLS-DRIGL----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTA---- 184
Query: 793 NDYVMEALSGKVV-------LLVTHQV-DFLPAFDSVLLMSDGEIL 830
++VME L+ K+V L+VTH + D L + ++++ G+I+
Sbjct: 185 -EFVME-LTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 30/212 (14%)
Query: 616 RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAA 675
G++ V AI + S S+ K + +S V G+ + G G+GKST+
Sbjct: 32 SIPGSMSTV--AIDLAGVSKSY---GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARM 86
Query: 676 ILGEVPHTQGTIQVYG------------KTAYVSQTAWI-QTGSIRENIL-FGS--PMDS 719
ILG G I V G + V Q + ++REN+L FG M +
Sbjct: 87 ILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMST 146
Query: 720 HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
+ + + SL++ L D R +LSGG K+R+ LARAL D + +LD+P
Sbjct: 147 REIEAVIP--SLLEFARLESKADA-----RVSDLSGGMKRRLTLARALINDPQLLILDEP 199
Query: 780 FSAVDAHTASSLFNDYVMEALS-GKVVLLVTH 810
+ +D H A L + + L+ GK +LL TH
Sbjct: 200 TTGLDPH-ARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------AYVSQTA 700
+S + G+ V I G G+GK++LL + G G + G+ Y
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 701 WI--QTG-----SIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
++ Q G + EN+ F + D E L + L E +P
Sbjct: 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL-AGFEDVPVR-------- 128
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL------SGK 803
LS GQ++R+ LAR A +++LD+PF+A+D + L EAL G
Sbjct: 129 --QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL------EALLAQHAEQGG 180
Query: 804 VVLLVTHQ 811
+V+L THQ
Sbjct: 181 MVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 31/207 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------AY-- 695
+++++L V PG+ A+ GE G+GKSTL+ + G T+GTI + A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 696 -----VSQTAWIQTGSIRENILFGS-------PMDSHQYQETLERCSLIKDLELLPYGDN 743
+ + I ++ EN+ G ++ ++E R +++ LL G
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMM----LLRVGLK 136
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--S 801
++ E+ NLS KQ +++A+ L DA + ++D+P S++ LF +M L
Sbjct: 137 VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LIMNQLRKE 194
Query: 802 GKVVLLVTHQVDFLPAF-DSVLLMSDG 827
G ++ ++H++ + D +M DG
Sbjct: 195 GTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 66/234 (28%), Positives = 104/234 (44%), Gaps = 40/234 (17%)
Query: 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKST---LLAAILGEV 680
+ + K SF++ +S KP + +IS + G A+ G GSGKST L+ +L
Sbjct: 2 KDNIVEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 681 PHTQGTIQVYGKTAYVSQTAWIQTGSIREN--ILFGSPMDSHQYQETLE----------- 727
+ I V G T ++T W IRE I+F +P D+ T+
Sbjct: 61 DNPNSKITVDGIT-LTAKTVW----DIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRA 114
Query: 728 --RCSLIK-------DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
R +IK D+ +L Y D+ NLSGGQKQR+ +A L + I +LD+
Sbjct: 115 VPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 779 PFSAVDAHTASSLFNDYVMEALSGK--VVLLVTHQVDFLPAFDSVLLMSDGEIL 830
S +D + + + V+ +TH +D D VL++ DG++L
Sbjct: 170 STSMLDPAGKEQIL-KLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222
|
Length = 282 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 33/246 (13%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP----HTQGTIQVYGKTAY 695
+++P + +SL ++ G+ +A+ G GSGKS AA LG +P T G + + GK
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72
Query: 696 VSQTAWIQTGSIRENILFGSP---------MDSHQYQETL-------ERCSLIKDLELLP 739
+ +I +N P M +H +ET + +L LE +
Sbjct: 73 PCALRGRKIATIMQN-----PRSAFNPLHTMHTHA-RETCLALGKPADDATLTAALEAVG 126
Query: 740 YGDNTEIGER-GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
+ + + +SGG QR+ +A AL +A + D+P + +D A + D +
Sbjct: 127 LENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV-VAQARILDLLES 185
Query: 799 --ALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS--SKEFQELVSAHK 853
+LLVTH + + D V +MS G I+ L + + LVSAH
Sbjct: 186 IVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSAHL 245
Query: 854 ETAGSE 859
G E
Sbjct: 246 ALYGME 251
|
Length = 254 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 49/234 (20%)
Query: 610 LQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGK 669
L ++ + N+ + A+ +++ + + + K + +IS+ + + A G G GK
Sbjct: 8 LMALPLLDVLNLSDEQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGK 64
Query: 670 STLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTAWI----QTG-----------SIRE 709
STLL L + +G I++ G+ Y + + G SI E
Sbjct: 65 STLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYE 124
Query: 710 NILFGSPM----DSHQYQETLERCSL--------IKDLELLPYGDNTEIGERGVNLSGGQ 757
N+++G + + E +ER SL +KD + E LSGGQ
Sbjct: 125 NVVYGLRLQGINNRRVLDEAVER-SLRGAALWDEVKD----------RLHENAFGLSGGQ 173
Query: 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK-VVLLVTH 810
+QR+ +ARA+ + ++ LLD+P SA+D S+L + ++ L K +++VTH
Sbjct: 174 QQRLVIARAIAIEPEVLLLDEPTSALDP--ISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 25/177 (14%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------KTAYVSQTAWI 702
+S + G+ + + G GSGK+TLL + G P G + + G + + ++
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
Query: 703 --QTG-----SIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
G S+ EN+ F Q +E L R L E P LS
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL-NGFEDRPVA----------QLS 127
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
GQ++R+ LAR L +++LD+P +A+D + G +V+L THQ
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-11
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+L Y + L IS T + G + IVG GSGK+TL L L+ P G++LVDGK
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 1301 LAEYDEPMELMKREGSLF 1318
EL ++ G +F
Sbjct: 64 DLTKLSLKELRRKVGLVF 81
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
+L RY LK +S E G ++ ++G GSGK+TL L L++P G++LVD
Sbjct: 6 AENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD 64
Query: 1299 GKLAEY-DEPMELMKREGSLF 1318
G +EL ++ G +F
Sbjct: 65 GLDTSSEKSLLELRQKVGLVF 85
|
Length = 235 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 83/377 (22%), Positives = 152/377 (40%), Gaps = 62/377 (16%)
Query: 963 LLIGFVSTLFLMS-----RSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILS 1017
LL+G T L + L I+ + + ++ L + R P+ F+ G I S
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 1018 RVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVL--AVVTWQ--VLFVSIPVIFLAIRLQ 1073
RV + + + + T A + ++ A++ + I + F AI +
Sbjct: 256 RVQLNDQVAEF-------LSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVL 308
Query: 1074 RYYFVTAKEL---MRLNGTTKSLVANHLAESIAGAM---TIRAFEEEDRFFAKNLDLIDT 1127
V+ + + RL L +I+G T++A E FF++
Sbjct: 309 ALQLVSRRRVDANRRLQQDAGKL----TGVAISGLQSIETLKASGLESDFFSRWAG---- 360
Query: 1128 NASPFFHSFAANEWLIQRLETLSA---------TVISSAAFCMV---LLPPGTFTPGFIG 1175
+ + N Q L L+ T ++SA +V + G T IG
Sbjct: 361 -----YQAKLLNA--QQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLT---IG 410
Query: 1176 MALSYGLSLNSSLVMSIQNQCTLANYIISVE----RLNQYMHVPSEAPEVVEDNRP---- 1227
M +++ SL SS + + N + +E RL+ + P + P + E+ P
Sbjct: 411 MLVAF-QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD-PLLEEEEAPAAGS 468
Query: 1228 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRL 1287
P+ + G V++ ++ Y P P +++ S T + G ++ +VG +GSGK+T+ + L
Sbjct: 469 EPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528
Query: 1288 IEPARGKILVDGKLAEY 1304
+P G+IL DG E
Sbjct: 529 YQPWSGEILFDGIPREE 545
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 42/217 (19%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVS-------- 697
+ ++S V PG+ + G G+GK+TL+ I G+ +G + G T
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 698 -------QTAWIQTG-SIRENI---------LFGSPMDSHQYQETLERCSLIKD-LELLP 739
Q + ++REN+ +F S + E I + L +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF----ARLRAEERRRIDELLATIG 136
Query: 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV-DAHTASS--LFNDYV 796
GD E LS GQKQ +++ L QD + LLD+P + + DA T + L
Sbjct: 137 LGD--ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS-- 192
Query: 797 MEALSGK-VVLLVTHQVDFLPAF-DSVLLMSDGEILR 831
L+GK +L+V H + F+ D V ++ +G +L
Sbjct: 193 ---LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA 226
|
Length = 249 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 26/225 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ +++ E G+ AI G+ GSGKSTL+ I + T GT+ V T +T
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT-HKTKDKYIR 81
Query: 706 SIRENI--LFGSPMDSHQYQETLERCSLI------KDLE---------LLPYGDNTEIGE 748
+R+ I +F P +S +++T+ER + +L+ L+ G + ++
Sbjct: 82 PVRKRIGMVFQFP-ESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS 140
Query: 749 RG-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA---HTASSLFNDYVMEALSGKV 804
+ +SGGQ ++I + L + DI +LD+P + +D L + K
Sbjct: 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKT 198
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
++LV+H ++ + + D V++M +G I+ +L K+ +
Sbjct: 199 IILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
|
Length = 286 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 58/228 (25%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKTAYVSQTA 700
K ++ ++L V+ G+ AI G GSGKSTL I+G + T+G I G
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG--------- 67
Query: 701 WIQTGSIRENILFGSPMD--------SHQY------------------QETLERCSLIKD 734
E+IL SP + + QY R L +
Sbjct: 68 --------EDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEF 119
Query: 735 LELLP-----YGDNTEIGERGVN--LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
++ L G + E ER VN SGG+K+R ++ + L + + +LD+P S +D
Sbjct: 120 IKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-D 178
Query: 788 ASSLFNDYVMEALS-GKVVLLVTHQ---VDFLPAFDSVLLMSDGEILR 831
A + + + G+ VL++TH +D++ D V ++ DG I++
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRLLDYIKP-DKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
I +L RY L +S T + G + +VG GSGK+TL A+ L++P G+IL+D
Sbjct: 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 1299 GKLAEYDEPMELMKREGSLFGQL 1321
GK EL +R G + QL
Sbjct: 60 GKDIAKLPLEELRRRIGYVP-QL 81
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 49/213 (23%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------------- 693
+ L V+ G+ +A+ GE GSGKSTLLA + G + G + + G+
Sbjct: 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAK 88
Query: 694 --AYVSQT-AWIQTGSIRENI-----LFG-SPMDSH-QYQETLERCSLIKDLELLPYGDN 743
+V Q+ I T + EN+ L G S S + LE+ L K L+ LP
Sbjct: 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---- 144
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS-------SLFNDYV 796
LSGG++QR+ LARA D+ D+P +D T SL ++
Sbjct: 145 -------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH- 196
Query: 797 MEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
G ++LVTH + D L + +G++
Sbjct: 197 -----GTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTA 694
+ I++ + G+ V + G G+GKSTLL I E T GTI+V G
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 695 YVSQT--------AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
Y+ + + ++ EN+ F + +E +R +L L +
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
E LSGG++QR+ +ARA+ I + D+P +D T + N +G V+
Sbjct: 135 AE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVV 190
Query: 807 LVTH 810
+ TH
Sbjct: 191 VATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 51/240 (21%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTL---LAAILGEVPHTQGTIQ---------------- 688
N+S+E+ G+ +AI G+ GSGK+T L A+L +P GTI+
Sbjct: 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL--LP-DTGTIEWIFKDEKNKKKTKEKE 81
Query: 689 ------VYGKTAY---------------VSQTAWIQ--TGSIRENILFGSPMDSHQYQET 725
V KT + V Q A Q +I ++I+FG +E
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA 141
Query: 726 LERCSLIKDLELLPYGDNTEIGERG-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
+R + K +EL+ G + +R LSGGQK+R+ LA L + D + D+P + +D
Sbjct: 142 KKRAA--KYIELV--GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLD 197
Query: 785 AHTASSLFNDYVMEALSGKVVLLVTHQVD-FLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
+ + GK ++LVTH +D L + DG+I++ + +L+ +K
Sbjct: 198 PQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNK 257
|
Length = 305 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 73/256 (28%), Positives = 113/256 (44%), Gaps = 44/256 (17%)
Query: 655 PGQKV-AICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------------AYV 696
PGQ V AI G GSGK+TL+ I G +G I + G+T YV
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 697 SQTAWIQTG-SIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN-L 753
Q A + S+R N+ +G + + + ER +ELL G + R L
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERV-----IELLGIG---HLLGRLPGRL 132
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLLVTH 810
SGG+KQR+ + RAL + L+D+P +A+D + +E L + +L V+H
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP--YLERLHAEFGIPILYVSH 190
Query: 811 QVD-FLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGS---ERLAEVTP 866
+ L D V+++ DG + A P ++ AS +L +E GS +AE
Sbjct: 191 SLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP----DLPWLAREDQGSLIEGVVAEHDQ 246
Query: 867 SQKSGMPAKEIKKGHV 882
G+ A + GH+
Sbjct: 247 --HYGLTALRLGGGHL 260
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 35/211 (16%)
Query: 655 PGQKV-AICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------------AYV 696
P + + A+ G GSGK++L+ I G +G I++ G+ YV
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81
Query: 697 SQTAWI-QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755
Q A + ++R N+ +G M + + +L+ LL LSG
Sbjct: 82 FQDARLFPHYTVRGNLRYG--MWKSMRAQFDQLVALLGIEHLL--------DRYPGTLSG 131
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLLVTHQV 812
G+KQR+ + RAL ++ L+D+P +++D + Y+ E L ++ +L V+H +
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-YL-ERLRDEINIPILYVSHSL 189
Query: 813 D-FLPAFDSVLLMSDGEILRAAPYHQLLASS 842
D L D V+++ +G++ + P ++ S
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 43/217 (19%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------- 693
K + ++SL + G+ A+ G G GKSTLL + GT+ + K
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74
Query: 694 ----AYVSQTAWIQTG-SIRENILFG-----------SPMDSHQYQETLERCSLIKDLEL 737
A + Q G ++RE + +G S D+ + + +E+ +
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRI------ 128
Query: 738 LPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
+ +R + +LSGGQ+QR LA L QD + LLD+P + +D + L +
Sbjct: 129 ------NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR--L 180
Query: 797 MEALS--GKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
M L+ GK V+ V H ++ + D ++++++G ++
Sbjct: 181 MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217
|
Length = 255 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G+++ ++ Y P VLK I+ + + G + IVG TG+GKTTL L R +P +G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1295 ILVDG 1299
IL+DG
Sbjct: 60 ILIDG 64
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-11
Identities = 66/312 (21%), Positives = 132/312 (42%), Gaps = 52/312 (16%)
Query: 571 VATLRLVQDPIRIIPD--VIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAI 628
+A +R + D ++ D + + ++V+ IV + ELQ+ K N+ N+
Sbjct: 205 LAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHET 264
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688
+ + + S + +R+IS V G+ + G VGSG++ L+ + G G I+
Sbjct: 265 VFEVRNVT---SRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321
Query: 689 VYGK--------------TAYVSQ----TAWIQTGSIRENIL---------FGSPM---D 718
+ GK AY+++ + SI +N+ + M
Sbjct: 322 LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFH 381
Query: 719 SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
Q T E + L L + N I E LSGG +Q++ +++ L ++ + D+
Sbjct: 382 EVDEQRTAENQR--ELLALKCHSVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDE 435
Query: 779 PFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQV-DFLPAFDSVLLMSDGEILRAAPY 835
P +D + ++ VM L+ GKV+L+V+ ++ + + D + + +G +
Sbjct: 436 PTRGIDVGAKAEIYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL------ 487
Query: 836 HQLLASSKEFQE 847
Q+L + + E
Sbjct: 488 TQILTNRDDMSE 499
|
Length = 510 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 42/208 (20%), Positives = 92/208 (44%), Gaps = 36/208 (17%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---TAYVSQTAWI 702
+ ++SL +R G+ + + G G+GK+TLL + G + ++G +++ G+ Q +
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 703 QTG--------------SIRENILFGSPM-----DSHQYQETLERCSLIKDLELLPYGDN 743
+ ++ EN+ P+ + Q + ++ + L D
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVAL--PLEVRGKKEREIQRRVGA--ALRQVGLEHKADA 133
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-- 801
LSGG++QR+ +ARA+ + L D+P +D + + + +++ L+
Sbjct: 134 FPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD--LLKRLNKR 186
Query: 802 GKVVLLVTHQVDFLPAFDS-VLLMSDGE 828
G V++ TH + + V+++ DG
Sbjct: 187 GTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-11
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 29/182 (15%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA-YVSQTAWIQTG- 705
+S V+ G+ + G G+GK+T L +LG G+I + G+ ++ A + G
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 706 -----------SIRENIL-----FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
++REN+L FG + + + + + L + ++GE
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARA---LVPPLLEFAKLENKADAKVGE- 138
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLV 808
LSGG K+R+ LARAL D D+ +LD+P + +D A L + + L GK +LL
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLT 194
Query: 809 TH 810
TH
Sbjct: 195 TH 196
|
Length = 306 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------AYVSQT-AWIQTGSIR 708
+ G G GK+TLL + G G+I + G+ V Q+ A ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERG-VNLSGGQKQRIQLARAL 767
EN+ FG M E R LE L E +R LSGGQ+QR+ LARAL
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRV-----LEALRLVQLEEFADRKPHQLSGGQQQRVALARAL 115
Query: 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVM--EALSGKVVLLVTH-QVDFLPAFDSVLLM 824
I LLD+P SA+D + + E L G + VTH Q + + D + +M
Sbjct: 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIM 174
Query: 825 SDGEILR 831
G+I +
Sbjct: 175 RKGKIAQ 181
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 638 EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVS 697
+ S P +++ S V+PG+ V + G GSG STLL A+ T+G + V G Y
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIHYNG 71
Query: 698 QTAWIQTGSIRENILFGSPMDSHQ----YQETLE---RCSLIKDLELLPYGDNTEIGERG 750
I++ S D H +ETL+ RC G+ RG
Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------GNEF---VRG 118
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKVVLL 807
+ SGG+++R+ +A AL A + D+ +D+ TA + + ++ +
Sbjct: 119 I--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK--CIRTMADVLKTTTFV 174
Query: 808 VTHQ--VDFLPAFDSVLLMSDGEI 829
+Q + FD VL++ +G
Sbjct: 175 SLYQASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 60/235 (25%), Positives = 94/235 (40%), Gaps = 49/235 (20%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--------HTQGTIQVYGKT---- 693
+R++SL + PG+ A+ G G+GKSTLL A+ G++ G + + G+
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 694 ---------AYVSQTAWIQTG---SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG 741
A + Q A Q S RE +L G + + R I L G
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQ---------DADIYLLDDPFSAVD-AH----- 786
+G LSGG+ R+Q AR L Q LLD+P +A+D AH
Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194
Query: 787 -TASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLL 839
T L D+ + L+ + H + D + +++DG I+ +L
Sbjct: 195 DTVRRLARDWNLGVLA------IVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 8e-11
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 19/201 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ N+S + G+ +AI G GSGKSTLL + G T G + G+ +S+ +
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP--MSKLSSAAKA 82
Query: 706 SIRENIL-----FGSPMDSHQYQETLERCSLI----------KDLELL-PYGDNTEIGER 749
+R L F + E + LI + LE+L G R
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR 142
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY-VMEALSGKVVLLV 808
LSGG++QR+ +ARAL + + L D+P +DA A S+F + L G L+V
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202
Query: 809 THQVDFLPAFDSVLLMSDGEI 829
TH + L M DG +
Sbjct: 203 THDLQLAKRMSRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 95/391 (24%), Positives = 169/391 (43%), Gaps = 71/391 (18%)
Query: 947 NVENPNVSTLRLIVVYLLI-----GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFR 1001
+ + + L+V+ L+I F+S+ + S VV+ +R + LF ++
Sbjct: 58 KADRSVLKWMPLVVIGLMILRGITSFISSYCISWVS-GKVVMTMR--RRLFGHMMG---- 110
Query: 1002 APMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAV--GATTNACSNLGVLAVV---TW 1056
P+SF+D G +LSR++ D V +LI V GA S +G+ ++ +W
Sbjct: 111 MPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA-----SIIGLFIMMFYYSW 165
Query: 1057 Q---VLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF-- 1111
Q +L V P++ +AIR+ F + M+ T V + + G + F
Sbjct: 166 QLSLILIVIAPIVSIAIRVVSKRFRNISKNMQ---NTMGQVTTSAEQMLKGHKEVLIFGG 222
Query: 1112 --EEEDRFFA-------KNLDLIDTNASPFFHSFAANEWLIQRLETLS-ATVISSAAF-- 1159
E RF + + ++ + + ++ +IQ + +L+ A V+ +A+F
Sbjct: 223 QEVETKRFDKVSNRMRQQGMKMVSAS--------SISDPIIQLIASLALAFVLYAASFPS 274
Query: 1160 CMVLLPPGTFTPGFIGM-ALSYGL-SLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSE 1217
M L GT T F M AL L SL + ++ Q Q +A + + L + + E
Sbjct: 275 VMDTLTAGTITVVFSSMIALMRPLKSLTN---VNAQFQRGMA----ACQTLFAILDLEQE 327
Query: 1218 APE---VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTG 1274
E V+E G ++ ++ Y L+ I+ G + +VGR+G
Sbjct: 328 KDEGKRVIE--------RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSG 379
Query: 1275 SGKTTLRGALFRLIEPARGKILVDG-KLAEY 1304
SGK+T+ L R + G+IL+DG L +Y
Sbjct: 380 SGKSTIANLLTRFYDIDEGEILLDGHDLRDY 410
|
Length = 582 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
I++++ S++++ + + +++L + G A G GSGKST++ + G TQ
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 685 GTIQVYGKTAYVSQTAWIQTGSIRENI--LFGSPMDSHQYQETLERCSLIKDLELLP--Y 740
G+++V T S + IR+ + +F P +S ++ET ++KD+ P +
Sbjct: 62 GSVRV-DDTLITSTSKNKDIKQIRKKVGLVFQFP-ESQLFEET-----VLKDVAFGPQNF 114
Query: 741 GDNTEIGER---------GVN----------LSGGQKQRIQLARALYQDADIYLLDDPFS 781
G + E E G++ LSGGQ +R+ +A L + I +LD+P +
Sbjct: 115 GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 782 AVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRA 832
+D L + SG ++LVTH +D + + D V ++ G+++ +
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226
|
Length = 280 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 31/211 (14%)
Query: 623 NVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----L 677
+ N IS+++ + S+ + ++N+ ++ G+ A+ G G GKST+L ++ L
Sbjct: 9 SKNIIISLQNVTISYGTFEA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL 65
Query: 678 GEVPHTQGTIQVYGKTAYVSQTAWIQT---------------GSIRENILFGSPMDSHQ- 721
E +G + G Y + ++ SI ENI FG+ ++ +
Sbjct: 66 IEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTG 125
Query: 722 -YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780
E +ER SL K D ++ E G +LSGGQ+QR+ +AR + + ++ L+D+P
Sbjct: 126 DMDELVER-SLRKAAVWDECKD--KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 781 SAVDAHTASSLFNDYVMEALSGK-VVLLVTH 810
SA+D S+L + M L +++VTH
Sbjct: 183 SALDP--ISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--GKTAYVSQTAW 701
P ++N+SL V G+ VA+ G G+GKSTLL ++ G I V G ++Q +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 702 IQTGSIRE-NILFGSPMDSHQYQETLERCSLIKDLE--LLPYGDNTE------------- 745
+ +R I + S Q+ + R S ++ + LL G E
Sbjct: 82 REVLEVRRKTIGYVS-----QFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARL 136
Query: 746 -IGERGVNL-----SGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
I ER +L SGG++QR+ +AR D I LLD+P +++DA
Sbjct: 137 NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 44/196 (22%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTA 700
++N+ L++ Q A G G GKST+L L +G + +GK Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 701 WIQT---------------GSIRENILFGSPMDSHQ--YQETLERCSL--------IKDL 735
++ SI +NI +G+ ++ ++ E +ER SL +KD
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-SLRQAALWDEVKD- 143
Query: 736 ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795
++ + G++LSGGQ+QR+ +ARA+ ++ L+D+P SA+D S+L +
Sbjct: 144 ---------KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP--ISTLRIEE 192
Query: 796 VMEALSGK-VVLLVTH 810
+M L + +++VTH
Sbjct: 193 LMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-10
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 14/220 (6%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--AY-------- 695
+R +S + P +KV I G GSGKSTLL + V G I+V G+ AY
Sbjct: 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385
Query: 696 ---VSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752
+ Q + G++R+N+ S + LE L + + G ++ + E G N
Sbjct: 1386 FSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812
S GQ+Q + +ARAL + ++L D +A VM A S V+ + H++
Sbjct: 1446 YSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRL 1505
Query: 813 DFLPAFDSVLLMSDGEILR-AAPYHQLLASSKEFQELVSA 851
+ +D +++M G + +P ++ F +V A
Sbjct: 1506 HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-10
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 1202 IISVERLNQYMHVPSEAPEVV--EDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISC 1259
I S R+N+ + PEV + + + + ++ Y VLKG+S
Sbjct: 308 IASARRINEITE---QKPEVTFPTTSTAAAD---QVSLTLNNVSFTYPDQPQPVLKGLSL 361
Query: 1260 TFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYDE 1306
+ G K+ ++GRTG GK+TL L R +P +G+IL++G+ +A+Y E
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
|
Length = 574 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 70/275 (25%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
E++ IK + + ISL +R GQ + + GE GSGKSTL A+L +P
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLR-AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP 338
Query: 682 HTQGTIQVYGKTAYVSQTAWIQTGSIRE--------NILFGSPMDS-------------- 719
+QG I+ G+ I S +E ++F P S
Sbjct: 339 -SQGEIRFDGQD--------IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEG 389
Query: 720 ---HQYQET-LERCSLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARALYQDADIY 774
H+ + + ER + + L G + R + SGGQ+QRI +ARAL ++
Sbjct: 390 LRVHEPKLSAAERDQRVIEA-LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448
Query: 775 LLDDPFSAVD----------------AHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
LLD+P SA+D H S LF + + VV + H+
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-----AVVRALCHR------- 496
Query: 819 DSVLLMSDGEILRAAPYHQLLASSKE--FQELVSA 851
V++M DG+I+ P + A+ + + L++A
Sbjct: 497 --VIVMRDGKIVEQGPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 22/150 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ +SL + G+ V + G G+GK+TLL + G+ T G I GK QTA I
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 706 SI---------------RENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
++ EN+ G + Q+QE ++ EL P I +R
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRI-QR 134
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDP 779
+SGG++Q + + RAL + LLD+P
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
|
Length = 237 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 36/193 (18%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTA 700
++ I+L++ Q A+ G G GKST L + L +G + + G+ Y S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 701 WIQ----TG-----------SIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYG 741
Q G SI +N+ +G D + E +E+ SL K L
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEK-SL-KGAALW--- 133
Query: 742 DNTEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
E+ +R + LSGGQ+QR+ +ARAL + ++ L+D+P SA+D ++ + +
Sbjct: 134 --DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP-ISTLKIEELIQ 190
Query: 798 EALSGKVVLLVTH 810
E +++VTH
Sbjct: 191 ELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 43/226 (19%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQ 698
+ + N+SL ++ G+ VA+ G G GKSTL ++G E P +QG + G+ +++
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEP--LAK 78
Query: 699 TAWIQTGSIRENI-------------------LFGSPM-------DSHQYQETLERCSLI 732
Q + R +I + P+ + + E ++
Sbjct: 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE---ML 135
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
+ ++L D++ + +R LSGGQ QR+ LARAL + + +LD+ S +D + +
Sbjct: 136 RAVDL----DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 793 NDYVMEAL---SGKVVLLVTHQVDFLPAFDS-VLLMSDGEILRAAP 834
+++ L G L +TH + + F V++M +G+I+ P
Sbjct: 192 R--LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
Length = 268 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G+++ ++ Y L +S T G K+ I+GR GSGK+TL L L +P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1295 ILVDG-KLAEYDEPMELMKREG 1315
+L+DG + + D P +L + G
Sbjct: 61 VLLDGTDIRQLD-PADLRRNIG 81
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G++ I DL +RY + VLK + + G K+GI GRTGSGK++L A FR+++ GK
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1295 ILVDG 1299
I++DG
Sbjct: 78 IVIDG 82
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 36/210 (17%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----KTAYVSQ 698
+ ++ +VR G+ G G+GK+T + + + T GT +V G + V +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 699 TAWI--QTGSI------RENI-----LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
+ I Q S+ REN+ L+G P D E ER ELL + E
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD-----EAEERAE-----ELLELFELGE 116
Query: 746 IGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGK 803
+R V SGG ++R+ +A +L D+ LD+P + +D T +++ DY+ G
Sbjct: 117 AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEGV 175
Query: 804 VVLLVTH---QVDFLPAFDSVLLMSDGEIL 830
+LL TH + D L D + ++ G I+
Sbjct: 176 TILLTTHYMEEADKLC--DRIAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 70/242 (28%), Positives = 101/242 (41%), Gaps = 51/242 (21%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
+ NI L + G+ V I G GSGKSTLL I T G + V G V+ +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK--VNDPK-VD 71
Query: 704 TGSIR-------------------ENILFGSPMD----SHQYQETLERCSLIKDLELLPY 740
IR EN++FG P+ S + E R ELL
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-PLRVRGASKEEAEKQAR-------ELL-- 121
Query: 741 GDNTEIGERG----VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
+ ER LSGGQ+QR+ +ARAL + L D+P SA+D + V
Sbjct: 122 -AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK--V 178
Query: 797 MEALS--GKVVLLVTHQVDFLPAFDSVLL-MSDGEILRAAPYHQLLASS-----KEFQEL 848
M+ L+ G +++VTH++ F S L+ + G I L+ + +EF +
Sbjct: 179 MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQH 238
Query: 849 VS 850
VS
Sbjct: 239 VS 240
|
Length = 240 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
V+ ++ RY D P VL+ IS G + +VG +GSGK+TL + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1297 VDG------KLAEYDEPMELMKREGSLFGQLVKE 1324
+DG LA + L+ ++ LF V E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG---TIQVYGKTAYVSQTAWIQTG 705
+S EV G + ICG G GKS+L ILGE+ G T GK YV Q ++ G
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 706 SIRENILFGSPMDSHQYQET-LERCSLIKDLELLPYGDNTEIGERGVN----------LS 754
++R+ I++ P S + L L + L+ + T I ER LS
Sbjct: 530 TLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLS 584
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
GG+KQRI +AR Y +LD+ SAV ++
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR 623
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 5e-10
Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 30/243 (12%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTM----RNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
E+ RA S E+ K + ++ SL + G+ I G GSGKST++ +
Sbjct: 16 EHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN 75
Query: 678 GEVPHTQGTIQVYG-----------------KTAYVSQT-AWIQTGSIRENILFGSPMDS 719
+ T+G + + G K A V Q+ A + ++ +N FG +
Sbjct: 76 RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135
Query: 720 HQYQETLERC-SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
+E E+ ++ + L Y + LSGG +QR+ LARAL + DI L+D+
Sbjct: 136 INAEERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDILLMDE 190
Query: 779 PFSAVDAHTASSLFNDYV-MEALSGKVVLLVTHQVD-FLPAFDSVLLMSDGEILRAAPYH 836
FSA+D + + ++ V ++A + ++ ++H +D + D + +M +GE+++
Sbjct: 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPD 250
Query: 837 QLL 839
++L
Sbjct: 251 EIL 253
|
Length = 400 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 5e-10
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
N AI + S S+ K + ++S + G+ + G G+GKST+ +LG + +
Sbjct: 2 NVAIDLVGVSKSY---GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR 58
Query: 685 GTIQVYG------------KTAYVSQTAWIQTG-SIRENIL-FGSPMDSHQYQETLERCS 730
G I V G V Q + ++REN+L FG +E
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST-REIEAVIP 117
Query: 731 LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASS 790
+ + L + + LSGG K+R+ LARAL D + +LD+P + +D H A
Sbjct: 118 SLLEFARLESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARH 172
Query: 791 LFNDYVMEALS-GKVVLLVTH 810
L + + L+ GK +LL TH
Sbjct: 173 LIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 40/212 (18%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA-------- 700
IS VR G+ V + G VG+G+S L+ + G T G + + GK +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 701 ----------WIQTGSIRENI---------LFGSPMDSHQYQETLERCSLIKDLELLPYG 741
I S+ +NI G +++ E +R I+ L +
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADR--FIRSLNIKTPS 389
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
I NLSGG +Q+ L R L +D + LLD+P +D ++N A
Sbjct: 390 REQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445
Query: 802 GKVVLLVTHQVDFLPAF----DSVLLMSDGEI 829
G VL V+ LP D +++M +G I
Sbjct: 446 GVAVLFVSSD---LPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 43/209 (20%)
Query: 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTAYVSQTAW 701
PG + G GSGKSTLL + G + GT+ + G + A V Q +
Sbjct: 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS- 84
Query: 702 IQTG---SIRENILFG-----------SPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
T ++R+ + G SP D+ L R L + +
Sbjct: 85 -DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL------------SHLA 131
Query: 748 ERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
+R ++ LSGG++QR+ +ARAL Q+ + LLD+P + +D A +G V+
Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 807 LVTHQVDFLPAF-DSVLLMSDGEILRAAP 834
H ++ ++ D V+++ G ++ A P
Sbjct: 192 AALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 51/254 (20%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+S+++ S S+ + + ++SLE++PG+ + + G G+GKSTL+ +LG V +G I
Sbjct: 5 VSLENVSVSF---GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 688 QVYGK--TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSL----IKDLELLPYG 741
+ GK YV Q ++ T P+ T+ R K ++LP
Sbjct: 62 KRNGKLRIGYVPQKLYLDT---------TLPL-------TVNRFLRLRPGTKKEDILPAL 105
Query: 742 DNTE----IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN--DY 795
+ I LSGG+ QR+ LARAL + +LD+P VD + +L++ D
Sbjct: 106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165
Query: 796 VMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKE 854
+ L VL+V+H + + A D VL ++ P E+VS H E
Sbjct: 166 LRREL-DCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTP------------EVVSLHPE 212
Query: 855 ------TAGSERLA 862
G+E+L
Sbjct: 213 FISMFGPRGAEQLG 226
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 8e-10
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 36/195 (18%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLA---AILGEVPHT--QGTIQVYGKTAY----- 695
++ IS+E+ VA G G GKST L + +P T +G I++ G+ Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 696 ----------VSQTAWIQTGSIRENILFGSPMDS--------HQYQETLERCSLIKDLEL 737
V Q SI EN+ +G ++ + +ETL+ +L +++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
++ E LSGGQ+QR+ +ARA+ + L+D+P SA+D + + + + +
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIH 190
Query: 798 EALSGKVVLLVTHQV 812
E +++VTH +
Sbjct: 191 ELKKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1246 YRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
Y P P VLK +S T G K+ IVG +GSGK+T+ LFR + + G IL+DG
Sbjct: 10 YDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDG 62
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 9e-10
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAW- 701
K +++I++++ I G GSGKSTLL + + I+V GK Y + +
Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 702 -------IQTG------------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGD 742
+ G SI +NI + P+ SH +E E ++++ L G
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEE-CLRKVGL 139
Query: 743 NTEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
E+ +R LSGGQ+QR+ +ARAL + L+D+P S +D S + E
Sbjct: 140 WKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLITE 198
Query: 799 ALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
+ +++V+H + D V + +GE++ +++ S K
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPK 244
|
Length = 257 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 54/230 (23%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----KTAYVSQTAWI 702
NIS + I G GSGKSTL+ G + GTIQV K
Sbjct: 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103
Query: 703 QTGSIR--------------------------ENILFG------SPMDSHQYQET-LERC 729
+ I+ ++I+FG ++ + + L +
Sbjct: 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKM 163
Query: 730 SLIKD-LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
L LE P+G LSGGQK+R+ +A L +I + D+P + +D
Sbjct: 164 GLDDSYLERSPFG-----------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 789 SSLFNDYVMEA-LSGKVVLLVTHQVD-FLPAFDSVLLMSDGEILRAA-PY 835
+ +++A + K V ++TH ++ L D V++M G+IL+ PY
Sbjct: 213 HEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPY 261
|
Length = 320 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689
I++ + S SK + NI+ ++A+ G G+GKSTL G + T G++ +
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 690 YGKTAYVSQTAWIQTGSIRE-----NILFGSPMDSHQYQETLER------CSLIKDLELL 738
G+ I +IRE ++F +P D + T+E+ +L D E +
Sbjct: 64 RGEP--------ITKENIREVRKFVGLVFQNP-DDQIFSPTVEQDIAFGPINLGLDEETV 114
Query: 739 PYGDNTEIGERGV---------NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
+ ++ + G+ +LSGG+K+R+ +A + + + +LD+P + +D
Sbjct: 115 AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 790 SLF---NDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
L ND G V+ THQ+D +P D + +M G I
Sbjct: 175 ELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
|
Length = 277 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 42/202 (20%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLL------------AAILGEVP------HTQGT- 686
++ +S+++ A+ G G GKST L A I G V + G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 687 -IQVYGKTAYVSQTAWIQTGSIRENILFGSPM----------------DSHQYQETLERC 729
+++ + V Q+ SIRENI +G D E +ER
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 730 SLIKDLELLPYGD-NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
++ L + + N + + + LSGGQ+QR+ +AR L D ++ L+D+P SA+D A
Sbjct: 181 --LRQAAL--WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IA 235
Query: 789 SSLFNDYVMEALSGKVVLLVTH 810
+S D + E V++VTH
Sbjct: 236 TSKIEDLIEELAEEYTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 45/155 (29%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 696 VSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGVNLS 754
VSQ + SI ENI FG + + + + + I + +E LP +T +G G +LS
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTHQVD 813
GGQKQRI +ARAL ++ I LLD+ S++D+++ + V ++ + K ++ + H++
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420
Query: 814 FLPAFDSVLLMSD----GEILRAAPYHQLLASSKE 844
+ D +++ ++ G ++A H+ L S ++
Sbjct: 1421 SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455
|
Length = 1466 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 34/227 (14%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
++++ + G VAI G GSGKSTLL + G + T GT+ + G+ + + +
Sbjct: 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLKPL 83
Query: 708 REN--ILFGSPMDSHQ-YQETLER--C------------SLIKDLELLPY-GDNTEIGER 749
R+ I+F P HQ ++ET+E+ C + K E++ G E+ R
Sbjct: 84 RKKVGIVFQFP--EHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR 141
Query: 750 G-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS------G 802
LSGGQ +R+ +A L + ++ +LD+P + +D + ME G
Sbjct: 142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM-----MEMFYKLHKEKG 196
Query: 803 KVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
+LVTH ++ + D +++M G + ++ A E + +
Sbjct: 197 LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAI 243
|
Length = 290 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VLKGIS + E G + I+G +GSGK+TL L L EP G I VDG+ + + ++
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 1313 RE 1314
R+
Sbjct: 77 RK 78
|
Length = 240 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
++ Y +LK IS FEGG IVG +G+GK+TL + RLI+P G IL+DG
Sbjct: 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67
Query: 1303 EYDEPMELMKREGSLFGQ 1320
+ + ++L ++ G +F Q
Sbjct: 68 KTIDVIDLRRKIGMVFQQ 85
|
Length = 241 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 47/212 (22%), Positives = 102/212 (48%), Gaps = 33/212 (15%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
AI + + SF ++ ++ + +S+E+ + AI G G GKST L L + +
Sbjct: 7 AIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 687 IQVYGKTAYVSQTAW---------------------IQTGSIRENILFGSPMDSHQYQET 725
++V G+ + +Q + + S+ +N+ +G + + +
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 726 LERC--SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783
++ S +KD +L + +I + ++LSGGQ+QR+ +ARAL + L+D+P +
Sbjct: 123 IDDIVESALKDADLWDEIKH-KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
Query: 784 DAHTASSLFNDYVMEAL---SGKVVLLVTHQV 812
D +S+ + ++++L S +++V+H +
Sbjct: 182 DP--IASMKVESLIQSLRLRSELTMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 46/224 (20%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQGTIQVYGKT------ 693
K ++ ++L V+ G+ AI G GSGKSTL I G P T GTI G+
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEP 71
Query: 694 ----------AY--------VSQTAWIQTGS-IRENILFGSPMDSHQYQETLERCSLIKD 734
A+ VS ++++ R + P+D + + L+
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK-----AK 126
Query: 735 LELLPYGDNTEIGERGVN--LSGGQKQRIQLARALYQDADIYLLDDPFSA--VDA-HTAS 789
L LL + E R VN SGG+K+R ++ + + + +LD+ S +DA +
Sbjct: 127 LALLGM--DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 790 SLFNDYVMEALSGKVVLLVTHQVDFLPAF--DSVLLMSDGEILR 831
N + L++TH L D V ++ DG I++
Sbjct: 185 EGINRLREP---DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 40/217 (18%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
++V + ++ SF+ ++ NISL V G+ AI G G GK+TLL I G++
Sbjct: 2 QSVANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58
Query: 682 HTQGTIQVYGK-----------TAYVSQTAWIQTG------SIRENILFGSPMDSH-QYQ 723
G I G+ T + Q+G ++ +N+ + P+ H Q
Sbjct: 59 PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY--PLREHTQLP 116
Query: 724 ETLERCSLIKDLELLPYGDNTEIGERGV------NLSGGQKQRIQLARALYQDADIYLLD 777
L +++ LE +G RG LSGG +R LARA+ + D+ + D
Sbjct: 117 APLLHSTVMMKLE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168
Query: 778 DPFSAVDAHTASSLFN--DYVMEALSGKVVLLVTHQV 812
+PF D T L + AL G ++V+H V
Sbjct: 169 EPFVGQDPITMGVLVKLISELNSAL-GVTCVVVSHDV 204
|
Length = 269 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 66/265 (24%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 572 ATLRLVQDPIRII---PDVIGVFIQANVAFSRIVNFLEAPELQSMNIR-QKGNIENVNRA 627
A L + D + I+ P V GV + I +L+ L N+R + IE +
Sbjct: 274 AVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKG-YLPEENVRFRPEEIEFEEKP 332
Query: 628 ISIKSAS---FSWEESSSKPTMRNISLEVRPGQ-----KVAICGEVGSGKSTLLAAILGE 679
A + K T + LEV G+ + I G G GK+T + + G
Sbjct: 333 PRDDKARDTLVEYP--DLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV 390
Query: 680 VPHTQG---TIQVYGKTAYVSQTAWIQTGSIRENILFGSPM--DSHQYQETLERCSLIKD 734
+ +G ++V K Y+S G++ + + S ++ ++K
Sbjct: 391 IKPDEGSEEDLKVSYKPQYISP---DYDGTVEDLLRSAIRSAFGSSYFKT-----EIVKP 442
Query: 735 LELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSA---VDAHTASS 790
L L + ER V LSGG+ QR+ +A AL ++AD+YLLD+P SA V+ +
Sbjct: 443 LNLED------LLERPVDELSGGELQRVAIAAALSREADLYLLDEP-SAYLDVEQRIIVA 495
Query: 791 LFNDYVMEALSGKVVLLVTHQVDFL 815
+E + K L+V H + +
Sbjct: 496 KVIRRFIEN-NEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 46/241 (19%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTAWI 702
++ L++ + +A G G GKSTLL L +G + + Y SQ +
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 703 ----QTG-----------SIRENILFGSPMDSHQ------YQETLERCSLIKDLELLPYG 741
Q G SI ENI F + ++ +++L R ++ ++++
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK----- 152
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
++ E+G LSGGQ+QR+ +ARA+ D+ L+D+P SA+D ++ + +E
Sbjct: 153 --DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP-ISTRQVEELCLELKE 209
Query: 802 GKVVLLVTHQV-------DFLPAFDSVLLMSD---GEILRAAPYHQLLAS--SKEFQELV 849
+++VTH + D+ F++ + G+++ +P Q+ S +KE +E +
Sbjct: 210 QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYI 269
Query: 850 S 850
S
Sbjct: 270 S 270
|
Length = 274 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 31/218 (14%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------T 693
++SL V G+ V + G G+GK+T ++G VP G I + +
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 694 AYVSQTAWI-QTGSIRENIL----FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
Y+ Q A I + S+ +N++ + + Q ++ L+++ + D+
Sbjct: 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE--LMEEFHIEHLRDSM---- 134
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVL 806
G +LSGG+++R+++ARAL + LLD+PF+ VD S + ++E L SG VL
Sbjct: 135 -GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP--ISVIDIKRIIEHLRDSGLGVL 191
Query: 807 LVTHQV-DFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843
+ H V + L + ++S G ++ ++L
Sbjct: 192 ITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
Length = 241 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK 692
+ + ++SL +RPG+ VAI G G+GKSTLL A+ GE+ G +++ G+
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64
|
Length = 258 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------AYV 696
+P ++ IS + G + + G G+GK+TLL I G + +G I ++ Y
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73
Query: 697 SQTAWI--QTG-----SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
Q ++ ++G ++REN L+ T E C L L+ Y
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGIT-ELCRLFSLEHLIDYPCGL----- 127
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
LS GQK+++ L R A ++LLD+P A+D + ++ G VLL +
Sbjct: 128 ---LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184
Query: 810 HQ 811
HQ
Sbjct: 185 HQ 186
|
Length = 200 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
+ + AI +K SF + S + + IS+++ + AI G G GKST + L +
Sbjct: 2 QQLIPAIKVKDLSFYYNTSKA---IEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRIS 57
Query: 682 HTQGTIQVYGKTAYVSQTAW----------IQTG-----------SIRENILFGSPMDSH 720
+G ++V G + Q + Q G SI EN+ +G + +
Sbjct: 58 ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117
Query: 721 QYQETLERC--SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
Q L+ S +K L + ++ + + LSGGQ+QR+ +ARAL + L+D+
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812
P SA+D A+ + + S + +VTH +
Sbjct: 177 PCSALDP-IATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1238 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297
I ++ Y+ +L +S G I + G+ G+GKTTL L LI+ + G IL+
Sbjct: 1 RIENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1298 DGK 1300
+GK
Sbjct: 60 NGK 62
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+L Y +L +S + G GI+G GSGK+TL L L++P G++L+DGK
Sbjct: 7 NLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 1301 -LAEYDEPMELMKR 1313
+A P EL K+
Sbjct: 65 DIASLS-PKELAKK 77
|
Length = 258 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-09
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 26/224 (11%)
Query: 621 IENVNRAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
I+ + SF + + +RN++LE++PG VA+ G+ G+GK+TLL ILG
Sbjct: 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432
Query: 680 V--------PHTQGTIQVYGKTAYVSQTAWIQTGSIRENIL--FGS-PMDSHQYQETLER 728
G ++V T + IL S D + E L R
Sbjct: 433 QKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNR 492
Query: 729 CSLIKD-LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
L L + + LS GQK+R +LA+ L + ++ L+D+ + +D T
Sbjct: 493 AGLSDAVLYRRKFSE----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT 542
Query: 788 ASSLFNDYVMEALS-GKVVLLVTHQVDFLPAF--DSVLLMSDGE 828
A + A G +++VTH+ + A D+++L+ G+
Sbjct: 543 AVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-09
Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 50/186 (26%)
Query: 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFG 714
PG+ + I G GSGK+TL A+ E+ G + I I E +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------IDGEDILEEVLDQ 48
Query: 715 SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774
+G + + SG + R+ LA A D+
Sbjct: 49 L--------------------------LLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 775 LLDDPFSAVDAHTASSLF------NDYVMEALSGKVVLLVTHQVDFL------PAFDSVL 822
+LD+ S +DA + L ++++ V+L T+ L FD +
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142
Query: 823 LMSDGE 828
++
Sbjct: 143 VLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 38/232 (16%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY-- 695
K ++N++L+V+ G A+ G G GK+T L AI L G I + G+ Y
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76
Query: 696 -VSQTAW-------------IQTGSIRENILFGSPM----DSHQYQETLERCSLIKDLEL 737
V A T S+ +N++ G + D E ER ++ L
Sbjct: 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS--LRGAAL 134
Query: 738 LPYGDNTEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
E+ +R LSGGQ+QR+ +ARAL + +I L+D+P SA+D + + +
Sbjct: 135 W-----DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI-E 188
Query: 794 DYVMEALSGKVVLLVTHQV-DFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
D + + +++VTH + D+ G+++ P QL + ++
Sbjct: 189 DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 45/234 (19%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQG 685
+I + + + + + +I+L+ G+ + + G G+GKS+LL + L E+P + G
Sbjct: 2 SIQLNGINCFY---GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS-G 57
Query: 686 TIQVYGKTAYVSQTAWIQTG-SIRENILFGSPMDSHQY---------------------- 722
T+ + G S+T + +R N+ M QY
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRELRRNV----GMVFQQYNLWPHLTVQQNLIEAPCRVLGL 113
Query: 723 --QETLERC-SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
+ L R L++ L L PY D + +LSGGQ+QR+ +ARAL + + L D+P
Sbjct: 114 SKDQALARAEKLLERLRLKPYADRFPL-----HLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 780 FSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLPAFDS-VLLMSDGEIL 830
+A+D + + + ++ L+ G ++VTH+V+ S V+ M +G I+
Sbjct: 169 TAALDPEITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220
|
Length = 242 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-09
Identities = 63/314 (20%), Positives = 116/314 (36%), Gaps = 49/314 (15%)
Query: 554 ACYFLNVPLYASN--VFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQ 611
+ +AS T V L ++ P+ ++ + A VAF++I AP
Sbjct: 250 VFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309
Query: 612 SMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKST 671
+ + + +++ F++++++ + I+L ++ G+ V + G GSGKST
Sbjct: 310 DF---PRPQAFPDWKTLELRNVRFAYQDNAFH--VGPINLTIKRGELVFLIGGNGSGKST 364
Query: 672 LLAAILGEVPHTQGTIQVYGK--------------TAYVSQTAWIQTGSIRENILFGSPM 717
L + G G I + GK +A S E SP
Sbjct: 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG--KASPQ 422
Query: 718 DSHQYQETLERCSL--IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775
++ + LE + D + LS GQK+R+ L AL ++ DI +
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSN-----------LKLSTGQKKRLALLLALLEERDILV 471
Query: 776 LD------DP-FSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828
LD DP F L ++ GK + ++H + D +L M +G+
Sbjct: 472 LDEWAADQDPAFRREFYQVLLPL-----LKEQ-GKTIFAISHDDHYFIHADRLLEMRNGQ 525
Query: 829 ILRAAPYHQLLASS 842
+ + +
Sbjct: 526 LSELTGEERDETAR 539
|
Length = 546 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 5e-09
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ VL +S + E G +GI+G G+GK+TL L L++P+ G+IL+DGK
Sbjct: 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 1237 VDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
+ + +L I Y + L +S E G +GIVG +GSGK+TL L L +P+ G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1295 ILVDGKLAEYDEPMELMKREGSLFG--QLV 1322
IL+DGK P+ KR + + Q+V
Sbjct: 64 ILLDGK------PLAPKKRAKAFYRPVQMV 87
|
Length = 252 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G++ + DL +Y VL+ IS + G ++G++GRTGSGK+TL A RL+ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1295 ILVDG 1299
I +DG
Sbjct: 60 IQIDG 64
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-09
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 648 NISLEVRPGQK-----VAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702
+ SLEV G+ + I G G GK+T + G + +G + K +Y Q +I
Sbjct: 352 DFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YI 409
Query: 703 ---QTGSIRENILF-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN-LSGGQ 757
G++ + + + S Y+ +IK L+L + ++ V LSGG+
Sbjct: 410 KPDYDGTVEDLLRSITDDLGSSYYKS-----EIIKPLQL------ERLLDKNVKDLSGGE 458
Query: 758 KQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVMEALSGKVVLLVTH 810
QR+ +A L +DAD+YLLD+P + +D + E L+V H
Sbjct: 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDH 512
|
Length = 590 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 46/213 (21%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------------AY 695
+S EVR G+ + + G G+GKSTLLA + G +P G+IQ G+ AY
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73
Query: 696 VSQTAWIQTGSIRENILFGSP----MDSHQYQETLERC--SLIKDL-ELLPYGDNTEIGE 748
+SQ ++ F P + HQ +T S + ++ E L D
Sbjct: 74 LSQ---------QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL---G 121
Query: 749 RGVN-LSGGQKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
R VN LSGG+ QR++LA + Q + LLD+P +++D ++L D ++ L
Sbjct: 122 RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL--DRLLSEL 179
Query: 801 --SGKVVLLVTHQVDF-LPAFDSVLLMSDGEIL 830
G V++ +H ++ L D V L+ G++L
Sbjct: 180 CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212
|
Length = 248 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 30/204 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694
+SL + PG + G G+GK+TL+ + P + GTI++ G +
Sbjct: 17 DGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG 75
Query: 695 YVSQT-AWIQTGSIRE-----NILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
Y+ Q ++RE L G P E +++ + L +IG
Sbjct: 76 YLPQEFGVYPNFTVREFLDYIAWLKGIP-SKEVKARVDE---VLELVNLGDRAK-KKIGS 130
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
LSGG ++R+ +A+AL D I ++D+P + +D F + + E ++V+L
Sbjct: 131 ----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR-FRNLLSELGEDRIVILS 185
Query: 809 THQV-DFLPAFDSVLLMSDGEILR 831
TH V D + V +++ G+++
Sbjct: 186 THIVEDVESLCNQVAVLNKGKLVF 209
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 44/201 (21%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAY------ 695
K ++ I ++ + A+ G GSGKST L + L + T +V G+ Y
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVTGQILYRGIDIN 90
Query: 696 ---------------VSQTAWIQTGSIRENILFGSPMDSHQ--------YQETLERCSL- 731
V Q SI ENI F + + +L++ +L
Sbjct: 91 RKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALW 150
Query: 732 --IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
+KD ++ + + LSGGQ+QR+ +ARA+ DI L+D+P SA+D ++
Sbjct: 151 DQVKD----------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-IST 199
Query: 790 SLFNDYVMEALSGKVVLLVTH 810
+ + E +++VTH
Sbjct: 200 MQLEETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-AYV----- 696
+ + ++SL + G+ A+ G G GKSTLL + G T G I + G ++V
Sbjct: 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR 91
Query: 697 ------SQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERG 750
A ++ +NI FG D E R + E+L E +R
Sbjct: 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVN-----EMLGLVHMQEFAKRK 146
Query: 751 VN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
+ LSGGQ+QR+ LAR+L + + LLD+P A+D
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 44/232 (18%)
Query: 628 ISIKSASFSW---EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTL---LAAILGEVP 681
I K+ S+ + EES+ K + +++LEV+ G+ + I G GSGKST+ + A+L +P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL--IP 62
Query: 682 HTQGTIQVYGKTAYVSQTAWIQTGSIREN--ILFGSPMDSHQYQETLERCSLIKDLELLP 739
++G + V G + W IR ++F +P D+ +E +D+ P
Sbjct: 63 -SEGKVYVDGLDTSDEENLW----DIRNKAGMVFQNP-DNQIVATIVE-----EDVAFGP 111
Query: 740 YG---DNTEIGER------GVN-----------LSGGQKQRIQLARALYQDADIYLLDDP 779
EI ER V LSGGQKQR+ +A L + + D+P
Sbjct: 112 ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171
Query: 780 FSAVDAHTASSLFNDYVME--ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+ +D + N + E G ++L+TH ++ D +++M G++
Sbjct: 172 TAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 8e-09
Identities = 55/236 (23%), Positives = 111/236 (47%), Gaps = 28/236 (11%)
Query: 599 SRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQK 658
+ + FL + Q +++ N NV I++ +F W + +K + +++L+++ +
Sbjct: 55 AELKQFLNKKKTQVDLLKEDFNHANV---FEIRNFNF-WYMNRTKHVLHDLNLDIKRNKV 110
Query: 659 VAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTAWIQTG-------- 705
A G G GKST L + L E +G I G + + ++
Sbjct: 111 TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQ 170
Query: 706 -------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNT--EIGERGVNLSGG 756
SI +N+ +G + ++ LE+ + K L+ D ++ + G LSGG
Sbjct: 171 KPTPFEMSIFDNVAYGPRNNGINDRKILEKI-VEKSLKSAALWDEVKDDLDKAGNALSGG 229
Query: 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812
Q+QR+ +ARA+ + ++ L+D+P SA+D A++ + ++E +++VTH +
Sbjct: 230 QQQRLCIARAIALEPEVLLMDEPTSALDP-IATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 47/217 (21%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692
++SL V PG+ I G G+GK+T++ I G+ +G++ G
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 693 --------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCS-LIKD-----LELL 738
T + + T + EN+ P D + R S KD LE +
Sbjct: 79 IGRKFQKPTVFENLTVF-------ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP---FSAVDAHTASSLFNDY 795
D E LS GQKQ +++ L QD + LLD+P + + + L
Sbjct: 132 GLAD--EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK-- 187
Query: 796 VMEALSGK-VVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
+L+GK V++V H ++F+ + D V ++ G +L
Sbjct: 188 ---SLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-09
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 52/232 (22%)
Query: 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-AY 695
++ S ++ I + G+ A+ G G+GKSTL+ I G VP GT+++ G A
Sbjct: 18 SKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77
Query: 696 VSQTAWIQTG--------------SIRENILFGSPMDSHQYQETLER---------CSLI 732
++ Q G S++ENILFG P + Q ++++ C L
Sbjct: 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQL- 132
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
DL+ + E+ +R Q +++ R L +D+ I +LD+P +++ LF
Sbjct: 133 -DLDSS--AGSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLF 180
Query: 793 NDYVMEALSGKVVLLV--THQVDFLPAF----DSVLLMSDGEILRAAPYHQL 838
+ + L + V +V +H+ LP D + +M DG I + L
Sbjct: 181 SR--IRELLAQGVGIVFISHK---LPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 74/409 (18%)
Query: 932 TFVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSL 991
+++ +++ A P L + L+ + L + ++ L
Sbjct: 23 AWLLARVVDGLISAGE---PLAELLPALGALALVLLLRALLGWLQERAAARAAAAVKSQL 79
Query: 992 FSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFS-----LIFAVGATTNACS 1046
+LL ++ + P G + + + LD F+ L+ AV
Sbjct: 80 RERLLEAVAALGPRWLQGRPSGELATLALEGVE--ALDGYFARYLPQLVLAVIVP----- 132
Query: 1047 NLGVLAVVTWQ------VLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAE 1100
L +LA V Q +L ++ P+I + + L + A+ R S ++ H +
Sbjct: 133 -LAILAAVFPQDWISGLILLLTAPLIPIFMILIGWA---AQAAARKQWAALSRLSGHFLD 188
Query: 1101 SIAGAMTIRAFEEEDRFFAKNLDLIDTNAS--------PFFHSFAANEWLIQRLETLSAT 1152
+ G T++ F A + F S LE +
Sbjct: 189 RLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAV--------LELFAT- 239
Query: 1153 VISSAAFCMVLLPPGTFTPGFIGMALSYG-LSLNSSLVMSIQNQCTLA-NYIISVERLNQ 1210
+S A +V + +IG L G L L + L + + LA + + + +L
Sbjct: 240 -LSVA---LVAV--------YIGFRLLAGDLDLATGLFVLL-----LAPEFYLPLRQLGA 282
Query: 1211 YMH------VPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR------PDSPLVLKGIS 1258
H +EA V D P P + + P L+ +S
Sbjct: 283 QYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVS 342
Query: 1259 CTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG-KLAEYDE 1306
T G ++ +VG +G+GK+TL L ++P G I V+G LA+ D
Sbjct: 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
++ Y VLK +S + G KI ++GR+GSGK+TL L ++P +G+I +DG
Sbjct: 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64
Query: 1301 LA 1302
Sbjct: 65 PV 66
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
+ +L Y P+ LK +S + G + ++G +G+GK+TL L L+EP G +L+D
Sbjct: 3 VENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 1299 G 1299
G
Sbjct: 62 G 62
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI------------LGEV---PHTQGT---- 686
++NI++ V Q A+ G G GKST L GE+ P
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 687 ---IQVYGKTAYVSQTAWIQTGSIRENILFG--------SPMDSHQYQETLERCSLIKDL 735
I+V + + V Q SI EN+ +G + + + L +L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 736 ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795
+ +G+ NLSGGQ+QR+ +ARAL D +I L D+P SA+D +S+ +
Sbjct: 152 K-------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI--EE 202
Query: 796 VMEALSGKV-VLLVTHQV 812
++ L KV +L+VTH +
Sbjct: 203 LISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 51/237 (21%)
Query: 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
I I++ + + E + K + N+++E+ G+ V + G GSGKSTL+ + G + T G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 686 TIQVYGKTAYVSQTAWIQTGSIREN--ILFGSPMDSHQ-YQETLERCSLIKDLELLPYG- 741
I + G + ++ IR+ ++F P +Q ++ET+E KD+ P
Sbjct: 63 KIIIDGVDITDKK---VKLSDIRKKVGLVFQYP--EYQLFEETIE-----KDIAFGPINL 112
Query: 742 --DNTEIGER--------GVN-----------LSGGQKQRIQLARALYQDADIYLLDDPF 780
EI R G++ LSGGQK+R+ +A + + I +LD+P
Sbjct: 113 GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172
Query: 781 SAVDAHTASSLFN-------DYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
+ +D + N +Y M ++LV+H ++ + D +++M+ G+
Sbjct: 173 AGLDPKGRDEILNKIKELHKEYNM------TIILVSHSMEDVAKLADRIIVMNKGKC 223
|
Length = 287 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
DL + Y VL+ +S + G + IVG G+GK+TL A+ L++P G I V GK
Sbjct: 4 DLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1301 LAEYD 1305
E +
Sbjct: 62 PLEKE 66
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ +L +Y D L G+S E G G++G G+GKTTL L L++P G+IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1297 VDGKLAEYDEPMELMKREGSLFGQ 1320
V G EP ++ +R G + +
Sbjct: 64 VLGYDV-VKEPAKVRRRIGYVPQE 86
|
Length = 293 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
+ ++ RY P VL+ +S + E G + I+G +GSGK+TL + L+ P G++ +D
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 1299 G 1299
G
Sbjct: 63 G 63
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAE 1303
RY V ++ G + ++G +GSGKTT + RLIEP G+I +DG+ + E
Sbjct: 9 RYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67
Query: 1304 YDEPMELMKREGSLFGQ 1320
D P+EL ++ G + Q
Sbjct: 68 QD-PVELRRKIGYVIQQ 83
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 39/234 (16%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLL------------AAILGEV---------P 681
++ I L+ + A+ G G GKST L I G V P
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 682 HTQGTIQVYGKTAYVSQTAWIQTGSIRENILFG---SPMDSHQY-----QETLERCSLIK 733
+ +Q+ + V Q SI EN+++G + + + +L++ ++
Sbjct: 78 NED-VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD 136
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
+++ + E ++LSGGQ+QR+ +AR L D+ LLD+P SA+D +S+
Sbjct: 137 EVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP-ISSTQIE 188
Query: 794 DYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQ 846
+ ++E ++LVTH + D G ++ A Q+ + KE +
Sbjct: 189 NMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 37/228 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAIL---GEVP--HTQGTIQVYGKTAYVSQTA 700
+ ISL+ + A+ G G GKST L + ++ G I+ G+ Y S+
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 701 WIQTG---------------SIRENILFG--------SPMDSHQYQETLERCSLIKDLEL 737
++ S+ +N+ +G + + +E+L++ ++ K+ +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
DN + + SGGQ+QRI +ARAL + LLD+P SA+D +SS + +M
Sbjct: 139 ----DNLDRNAQA--FSGGQQQRICIARALAVRPKVVLLDEPTSALDP-ISSSEIEETLM 191
Query: 798 EALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKE 844
E ++VTH + D + +G+++ A P ++ + K+
Sbjct: 192 ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKK 239
|
Length = 251 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 38/194 (19%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTL---LAAILGEVPHTQ--------GTIQVYGKTA 694
++NI+L + + AI G G GKST L ++ VP+ + G+ + GK
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 695 YVSQTAWI----QTG-----SIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYG 741
V I Q G SI +N+ +G + + + QE +E+ +KD+ L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKS--LKDVALW--- 142
Query: 742 DNTEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
E+ +R ++LSGGQ+QR+ +ARAL + D+ L+D+P SA+D S+ + ++
Sbjct: 143 --DEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP--VSTRKIEELI 198
Query: 798 EALSGK-VVLLVTH 810
L K +++VTH
Sbjct: 199 LKLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-08
Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 38/226 (16%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I +++ S+S+ + + P + NI+L ++ G+ + I G+ GSGKSTL + G + +G +
Sbjct: 2 IRLENVSYSYPDGT--PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 688 QVYGKTAYVSQTAWIQTGSIRE--NILFGSPMDSHQYQETLERCSLIKDLELLPYGDN-- 743
V G + + + IR+ I+F +P ++ T+E +DL P +N
Sbjct: 60 LVSG----IDTGDFSKLQGIRKLVGIVFQNP-ETQFVGRTVE-----EDLAFGP--ENLC 107
Query: 744 ---TEIGER-----------------GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783
EI +R LSGGQ Q + LA L + + + D+ S +
Sbjct: 108 LPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167
Query: 784 DAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
D + ++ GK ++ +TH ++ L D +++M G+I
Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKI 213
|
Length = 274 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTA 700
+ +ISLE Q A+ G G GKST L + L +G I + G+ Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 701 WIQ---------------TGSIRENILFGSPMD--------SHQYQETLERCSL---IKD 734
++ SI EN+ +G ++ + + + +L +L +KD
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
+ E + LSGGQ+QR+ +ARAL + ++ L+D+P SA+D A+ +
Sbjct: 142 ----------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEE 190
Query: 795 YVMEALSGKVVLLVTH 810
+ E + +++VTH
Sbjct: 191 LIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLL------------AAILGEVP------HT 683
K + +I++ + + A+ G G GKSTLL I G++
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 684 QGT--IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG 741
G + + K V Q SI EN+ +G + + ++TL+ + K L+
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-VEKSLKGAALW 136
Query: 742 DNTE--IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA 799
D + + + ++LSGGQ+QR+ +AR L + ++ L+D+P SA+D A++ D + +
Sbjct: 137 DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDL 195
Query: 800 LSGKVVLLVTH 810
V++VTH
Sbjct: 196 KKEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 3e-08
Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 36/312 (11%)
Query: 545 VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNF 604
+L+ A F A F ++ A+ + FV L ++ P+ ++ + + QA +A R+ +F
Sbjct: 250 LLIGCALFAAAMFASID--AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307
Query: 605 LEA-------PELQSMNIRQKGNIENVNRAISIKSASFSWE--ESSSKPTMRNISLEVRP 655
E EL + + +I +K + + E S + I L +
Sbjct: 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ 367
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA-------YVSQTAWIQTGSIR 708
G V I GE G GKSTL G +G I + G Y + I
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL 427
Query: 709 ENILFGSPMDSH-------QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761
+ L G H QY + LE +K +E + T LS GQ++R+
Sbjct: 428 FDDLIGPDEGEHASLDNAQQYLQRLEIADKVK-IEDGGFSTTTA-------LSTGQQKRL 479
Query: 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLPAFD 819
L A +D I L D+ ++A F + ++ L GK +++++H + D
Sbjct: 480 ALICAWLEDRPILLFDE-WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD 538
Query: 820 SVLLMSDGEILR 831
++ ++ G I++
Sbjct: 539 QIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1248 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD 1305
P P VLKG++ E G + ++G G+GK+TL L L+ P G +L+DG+ +Y
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYS 59
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 621 IENVNRAISIKS-ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
+ ++ IK + W+ + + ++L + G+ + + GE G GKST AI+G
Sbjct: 11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70
Query: 680 VPHTQGTIQVYGKTAY-VSQTAWIQTGSIRENI--LFGSPMDS---------------HQ 721
V T G + GK + W R +I +F P+ S
Sbjct: 71 VKATDGEVAWLGKDLLGMKDDEWRAV---RSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127
Query: 722 Y------QETLERC-SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774
Y QE +R +++ + LLP N E SGGQ QRI +ARAL + +
Sbjct: 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE----FSGGQCQRIGIARALILEPKLI 183
Query: 775 LLDDPFSAVD 784
+ D+P SA+D
Sbjct: 184 ICDEPVSALD 193
|
Length = 331 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-08
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 39/243 (16%)
Query: 618 KGNIENVNRAISIKSASFSWE--------ESSSKPTMRNISLEVRPGQKVAICGEVGSGK 669
+ + F W + + + N+ V+PG A+ G G+GK
Sbjct: 743 DDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGK 802
Query: 670 STLLAAILGEVPH---TQGTIQVYGK---------TAYVSQT-AWIQTGSIRENILFGSP 716
+TLL + V T G V G+ YV Q + T ++RE++ F +
Sbjct: 803 TTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAY 862
Query: 717 M---------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767
+ + +Y E +IK LE+ Y D +G G L+ Q++R+ + L
Sbjct: 863 LRQPKSVSKSEKMEYVE-----EVIKLLEMESYADAV-VGVPGEGLNVEQRKRLTIGVEL 916
Query: 768 YQDADIYL-LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ--VDFLPAFDSVLLM 824
+ L LD+P S +D+ TA S+ A G+ +L HQ FD +LL+
Sbjct: 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976
Query: 825 SDG 827
G
Sbjct: 977 QKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYV 696
K + ++ L++ A G G GKST L + + G I + G+ Y
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 697 SQTAWIQ---------------TGSIRENILFG--------SPMDSHQYQET-LERCSL- 731
+ ++ SI EN+ +G S + + ET L + L
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLW 150
Query: 732 --IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
+KD + E G LSGGQ+QR+ +ARA+ ++ L+D+P SA+D A+
Sbjct: 151 EEVKD----------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP-IAT 199
Query: 790 SLFNDYVMEALSGKVVLLVTH 810
+ + + E +++VTH
Sbjct: 200 AKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
LK IS G ++GI+G G+GK+TL + + +P GK+ V GK+A
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA 91
|
Length = 249 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
LK +S G +IG++GR G+GK+TL L + P G + V G+++
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS 86
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692
++ ++ G+ +A+ G G+GKSTLL + G + G + + G+
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 693 --TAYVSQTAWIQ--TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
V Q Q + +++ FG P++ + +ER + + L + + + E
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVER-RVREALTAV---GASGLRE 122
Query: 749 RGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN--DYVMEALSGKVV 805
R + LSGG+K+R+ +A A+ D+ LLD+P + +D + + G V
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE--GMTV 180
Query: 806 LLVTHQVD 813
++ TH VD
Sbjct: 181 VISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 43/166 (25%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTL---LAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+S + G+ +A+ GE G GKSTL L I E P T G + G+ + +
Sbjct: 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMI--ETP-TGGELYYQGQDLLKADPEAQKLL 90
Query: 706 SIRENILFGSPMDS----HQYQETLERCSLIKDLELLPYGDNTEIG--ERG--------- 750
+ I+F +P S + + LE LI NT + ER
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLI----------NTSLSAAERREKALAMMAK 140
Query: 751 VNL------------SGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
V L SGGQ+QRI +ARAL D D+ + D+P SA+D
Sbjct: 141 VGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VL IS + G G +G G+GKTT + LI+P G+I DGK Y + +E ++
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGK--SYQKNIEALR 72
Query: 1313 REGSL 1317
R G+L
Sbjct: 73 RIGAL 77
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 41/194 (21%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAI--LGEV---PHTQGTIQVYGKTAY------- 695
+++L + P A G G GKST+L + + EV +G + + G+ Y
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 696 -VSQTAWI--------QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPY---GDN 743
V +T + T SIR+N++ G ++ + ++ L+ EL+ G N
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD--------ELVEKSLRGAN 133
Query: 744 --TEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL-FNDYV 796
E+ +R G LSGGQ+QR+ +ARA+ + D+ L+D+P SA+D S+L D +
Sbjct: 134 LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP--ISTLAIEDLI 191
Query: 797 MEALSGKVVLLVTH 810
E +++VTH
Sbjct: 192 NELKQDYTIVIVTH 205
|
Length = 258 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 1235 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
G V ++ Y RPD+ VL+ +S T G +VG +GSGK+T+ L +P
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 1293 GKILVDGK-LAEYD-----EPMELMKREGSLFGQLVKE 1324
G++L+DGK +++Y+ + L+ +E LF + +++
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 8e-08
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1241 DLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
+L + + S L +S + + G +G+VG +GSGK+TL A+ L++P G I+ D
Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65
Query: 1299 GK 1300
GK
Sbjct: 66 GK 67
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 33/222 (14%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY 695
S ++ + L++ A+ G G GKSTLL L E +G ++++G+ Y
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74
Query: 696 VSQTAWIQTG----------------SIRENILFGSPMDS--HQYQETLERCSLIKDLEL 737
I+ +I +N+ G ++ +E ER
Sbjct: 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA 134
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
L + + NLSGGQ+QR+ +ARAL I L+D+P + +D + + + +
Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EELLF 193
Query: 798 EALSGKVVLLVTHQVDFLPA-----FDSVLLMSDGEILRAAP 834
E ++LVTH PA D V + G+++ P
Sbjct: 194 ELKKEYTIVLVTHS----PAQAARVSDYVAFLYLGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
++ Y LK +S G + I+G GSGK+T+ L L++P G+I +DG
Sbjct: 12 NVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71
Query: 1301 LAEYDEPMELMKREGSLF 1318
+ E+ K+ G +F
Sbjct: 72 TISKENLKEIRKKIGIIF 89
|
Length = 271 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 1217 EAPEVVEDNRPPPNWPVV-GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1275
EV + PP WPV G V ++ Y P P +L GIS T G + IVG +G+
Sbjct: 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGA 300
Query: 1276 GKTTLRGALFRLIEPARGKILVDG 1299
GK+T+ LFR + G I +DG
Sbjct: 301 GKSTILRLLFRFYDVNSGSITIDG 324
|
Length = 497 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-07
Identities = 70/337 (20%), Positives = 129/337 (38%), Gaps = 95/337 (28%)
Query: 583 IIPDVIGVFIQA---NVAFSRIVNFLEAPELQSMN-----IRQKGNIENVN--------R 626
+I ++GV I + I ++++ L++ N I +K +EN + +
Sbjct: 324 VISILLGVLISMFMLTIILPNITEYMKS--LEATNSLYEIINRKPLVENNDDGKKLKDIK 381
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I K+ F ++ ++++ + G+ A GE G GKST+L I T+G
Sbjct: 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD 441
Query: 687 IQV--------------YGKTAYVSQTAWIQTGSIRENILFG------------------ 714
I + K VSQ + + SI+ NI +
Sbjct: 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDG 501
Query: 715 -------------------------SPMDSHQYQETLERCSLIKDLEL------------ 737
+ DS++ E + IKD E+
Sbjct: 502 NDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDF 561
Query: 738 ---LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
LP T +G LSGGQKQRI +ARA+ ++ I +LD+ S++D S
Sbjct: 562 VSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD--NKSEYLVQ 619
Query: 795 YVMEALSG---KVVLLVTHQVDFLPAFDSVLLMSDGE 828
+ L G ++ +++ H++ + +++ ++S+ E
Sbjct: 620 KTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656
|
Length = 1466 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 51/210 (24%), Positives = 99/210 (47%), Gaps = 35/210 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
++ I++ ++ G+ AI G G+GKSTL + G + + G I GK S+ ++
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK-- 79
Query: 706 SIRENI--LFGSPMDSHQYQETLERCSLIKDLELLPYG---DNTEIGER--------GVN 752
+RE++ +F P +Q L S+ +D+ E+ +R G+
Sbjct: 80 -LRESVGMVFQDP--DNQ----LFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE 132
Query: 753 ---------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-- 801
LS GQK+R+ +A L + + +LD+P + +D S + ++E
Sbjct: 133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQKEL 191
Query: 802 GKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
G +++ TH +D +P + D+V +M +G ++
Sbjct: 192 GLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
Length = 283 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 28/214 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV--YGKTAYVSQTAWIQ 703
+ N SL + + + G GSGKST++ G + G V Y A + + ++
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 704 ------------------TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
+I ++I FG QE ++ + L LP +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP----ED 142
Query: 746 IGERG-VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGK 803
+R LSGGQK+R+ LA + D + +LD+P +D N + + K
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 202
Query: 804 VVLLVTHQVD-FLPAFDSVLLMSDGEIL-RAAPY 835
+++VTH +D L D V++M +G+++ +P+
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
|
Length = 289 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLL----------------AAILGEVPHTQGT 686
K + +I++++ + A+ G G GKST L I G+ Q
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 687 IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
+ + V Q + SI ENI + +P + E +L+ D L G E+
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISY-APKLHGMIKNKDEEEALVVDC-LQKVGLFEEV 132
Query: 747 GER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG 802
++ + LSGGQ+QR+ +ARAL + LLD+P SA+D +S + + + E
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHN 191
Query: 803 KVVLLVTHQV 812
+++VTH +
Sbjct: 192 LSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 52/216 (24%), Positives = 81/216 (37%), Gaps = 55/216 (25%)
Query: 634 SFSWE--------ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLL--AAILGEVPHT 683
+W+ + + + NIS V+PG A+ GE G+GK+TLL A
Sbjct: 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI 62
Query: 684 QGTIQVYGK---------TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIK 733
G I + G+ T YV Q ++RE + F + +
Sbjct: 63 TGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------------- 106
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
RG LS Q++R+ + L I LD+P S +D+ A ++
Sbjct: 107 ---------------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149
Query: 794 DYVMEALSGKVVLLVTHQ--VDFLPAFDSVLLMSDG 827
A SG+ +L HQ FD +LL+ G
Sbjct: 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 48/198 (24%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
ISI A S+ S P + N L + ++V + G G+GKSTL+ + GEV G I
Sbjct: 4 ISIHGAWLSF---SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60
Query: 688 Q---------------------VYGKTAYVSQTAWIQTGSIRE-----NILFGSPMDSH- 720
VY +V++ Q ++ +++ P + +
Sbjct: 61 IYEQDLIVARLQQDPPRNVEGTVY---DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNL 117
Query: 721 ----QYQETLERCSL------IKD-LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769
+ QE L+ +L I + L L + + LSGG ++ L RAL
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVS 173
Query: 770 DADIYLLDDPFSAVDAHT 787
+ D+ LLD+P + +D T
Sbjct: 174 NPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
VL +S E G + ++G +GSGK+TL + L EP G IL+DG+
Sbjct: 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE 62
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ L Y L +S T E G + ++G +G GKTTL + L P G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1297 VDGK 1300
+DG+
Sbjct: 59 IDGR 62
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 46/175 (26%)
Query: 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
A+ +++ + ++ P +N++L + G+++AI GE G GK+TLL ++GE+
Sbjct: 317 RNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373
Query: 685 GTIQVYGKTAYVSQTAWIQTGSIRENILFG-SPMD-SHQYQETLERCSLI---------K 733
GT++ W EN G D ++ ++ L +L
Sbjct: 374 GTVK------------W------SENANIGYYAQDHAYDFENDL---TLFDWMSQWRQEG 412
Query: 734 DLE---------LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
D E LL D +I + LSGG+K R+ + + Q ++ ++D+P
Sbjct: 413 DDEQAVRGTLGRLLFSQD--DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
|
Length = 530 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 31/209 (14%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI----------- 676
I I+ +F + + ++NI+++ Q AI G G GKSTLL A+
Sbjct: 5 IKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 677 -LGEV---------PHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETL 726
G V P+ + + + V Q SI +N+ FG M Q L
Sbjct: 62 LEGAVLLDNENIYSPNLD-VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 727 ERCSLIKDLELLPYGDNTE--IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
+ + K L D + + + G+ LSGGQ+QR+ +AR L + ++ L+D+P SA+D
Sbjct: 121 DEV-VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 785 AHTASSLFNDYVMEALSGK-VVLLVTHQV 812
S++ + +M+ L + +VTH +
Sbjct: 180 P--VSTMRIEELMQELKQNYTIAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695
++I+L++ G+ V G G GKSTLL I G T G + + K
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
Query: 696 VSQT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
V Q+ A S+ EN+ FG + + + + + + + L L + +
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-------LDRKPK 132
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
LSGGQ+QR+ + R L + ++LLD+P S +DA
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
|
Length = 369 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY----- 695
+ NI++++ A+ G G GKST L + L E +G + GK Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 696 ----------VSQTAWIQTGSIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYG 741
V QT SI +NI +G + D + E +E+ SL K
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ-SLKKSALWNEVK 141
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
D ++ ++LSGGQ+QR+ +AR L + ++ L+D+P SA+D + + + ++
Sbjct: 142 D--KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI-EELIINLKE 198
Query: 802 GKVVLLVTHQV 812
+++VTH +
Sbjct: 199 SYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688
R++S ++ PG+ + I GE GSGK+TLL A+ + G +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY 695
K + +I+L + + A+ G G GKST L + L +G + + GK Y
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 696 ---------------VSQTAWIQTGSIRENILFGSPMDSHQ--------YQETLERCSLI 732
V Q SI +N+ +G + + + L++ +L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL- 791
+++ ++ + + LSGGQ+QR+ +AR + D+ L+D+P SA+D S+L
Sbjct: 135 DEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP--ISTLK 185
Query: 792 FNDYVMEALSGKVVLLVTH---QVDFLPAFDSVLLMSD 826
D ++E +++VTH Q + + + LM D
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGD 223
|
Length = 251 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
VLKG+ G + I+G +GSGK+TL + L+ P G++L+DG+
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 4e-07
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS------GKVV 805
LSGGQKQR+ +ARAL + + L D+ SA+D T S ++E L G +
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS-----ILELLKDINRELGLTI 194
Query: 806 LLVTHQVDFLPAF-DSVLLMSDGEI 829
+L+TH++D + D V ++ G +
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRL 219
|
Length = 343 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 62/220 (28%), Positives = 93/220 (42%), Gaps = 63/220 (28%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLL---AAI----LGEVPHTQGTIQVYGKTAY 695
K +++ISL PG K+ + G G+GKSTLL A + GE G K Y
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI-----KVGY 72
Query: 696 VSQTAWI-QTGSIRENI-------------------LFGSP---MDS-----HQYQETLE 727
+ Q + T ++REN+ F P MD+ + QE ++
Sbjct: 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIID 132
Query: 728 RC---SLIKDLEL------LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778
L + LE+ P D ++ LSGG+++R+ L R L D+ LLD+
Sbjct: 133 AADAWDLDRKLEIAMDALRCPPWD-ADVT----KLSGGERRRVALCRLLLSKPDMLLLDE 187
Query: 779 PFSAVDAHTASSLFN---DYVMEALSGKVVLLVTHQVDFL 815
P + +DA + + L +Y G VV VTH FL
Sbjct: 188 PTNHLDAESVAWLEQHLQEY-----PGTVV-AVTHDRYFL 221
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYV-----SQTAWI 702
+L V PG+ +A+ GE G+GKST++ + G G+I GK SQ A I
Sbjct: 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81
Query: 703 Q----------TGSIRENILFG----SPMDSHQYQETLERCS-LIKDLELLPYGDNTEIG 747
+I ENI G + +++ L+ L L + + +G
Sbjct: 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN-LRFSSDKLVG 140
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV-DAHTASSLFN 793
E LS G++Q +++A+ L ++ + ++D+P A+ D T SLF
Sbjct: 141 E----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-SLFR 182
|
Length = 501 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 1237 VDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
++ ++ RY RPD P +LKG+S T G + +VG +G GK+T+ L R +P G+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1295 ILVDGK 1300
IL+DG
Sbjct: 60 ILLDGV 65
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+L + Y + VL+ IS + E G ++G G+GK+TL A+ L++P+ G+I + GK
Sbjct: 9 NLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66
|
Length = 254 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 1207 RLNQYMHVPSEAPEVVE--DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1264
+L ++ V P+V + V G V+ D+ Y +S ++ +S + G
Sbjct: 305 KLEEFFEVEDAVPDVRDPPGAIDLGR--VKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPG 361
Query: 1265 HKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+ IVG TG+GK+TL L R+ +P G+IL+DG
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396
|
Length = 588 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE-----PA 1291
+++ DL + Y LK IS G ++G +G GK+TL L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1292 RGKILVDGK--LAEYDEPMELMKREGSLFGQ 1320
G++L+DGK + +EL +R G +F +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 43/229 (18%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS-- 706
+S E + G+ V G G+GKST + I G +P G++QV G+ + +
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80
Query: 707 -----------IRENILFGSPM-------DSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
+RE + F + + + +E +E L + + +IG+
Sbjct: 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-------QHKKIGQ 133
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
LS G +QR+ LA+AL D + +LD+P + +D + + N + K ++L
Sbjct: 134 ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN-VIKNIGKDKTIILS 188
Query: 809 THQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETA 856
TH + + A D V++++ G+I+ + K+ EL +A+K+
Sbjct: 189 THIMQEVEAICDRVIIINKGKIV----------ADKKLDELSAANKKQV 227
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
DL+ Y PD LKGI+ E G + ++G G+GK+TL +++P G++L+ G+
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 1301 LAEYDEP--MELMKREGSLF 1318
+YD+ +E+ K G +F
Sbjct: 65 PIKYDKKSLLEVRKTVGIVF 84
|
Length = 275 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 6e-07
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812
LSGGQ+Q + LAR L + ++ LLD+P SA+D T + +++ V++VTH +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNL 222
Query: 813 DFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETA 856
D L DG ++ P QL +S K H ETA
Sbjct: 223 AQAARISDRAALFFDGRLVEEGPTEQLFSSPK--------HAETA 259
|
Length = 276 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAA---ILGEVPH--TQGTIQVYG----- 691
SK + +I+L++ + A G G GKST L + VP+ +G + + G
Sbjct: 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76
Query: 692 ----------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG 741
K V Q SI +N+ +G + H + ++ I + L G
Sbjct: 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKL--HGLAKNKKKLDEIVEKSLTSVG 134
Query: 742 DNTEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
E+G+R LSGGQ+QR+ +ARA+ + L+D+P SA+D A+++ + +
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQ 193
Query: 798 EALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
E +++VTH + D V G I+
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227
|
Length = 251 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 37/207 (17%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
N++L+VRP A+ GE G+GKSTLL + G G+I GK I S
Sbjct: 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE--------IDFKSS 67
Query: 708 RENILFGSPMDSHQYQETLERCSLIKDLEL--LP-----------YGDNTEI-------- 746
+E + G M HQ + + S++ ++ L P Y D I
Sbjct: 68 KEALENGISM-VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126
Query: 747 --GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SG 802
+ LS Q Q I++A+A +A I ++D+P S++ + LF ++ L G
Sbjct: 127 DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKERG 184
Query: 803 KVVLLVTHQVD-FLPAFDSVLLMSDGE 828
++ ++H+++ D + ++ DG+
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
+S ++ PG+ +++ GE GSGKST A+L V G I G+ +Q ++
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ--AL 399
Query: 708 RENI--LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL------------ 753
R +I +F P S ++T+ S+++ L + R L
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGD-SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458
Query: 754 ------SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
SGGQ+QRI +ARAL + + + D+ SA+D + N
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
Length = 623 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 55/202 (27%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY----V 696
+++I+L + Q A+ G G GKSTLL + L E G + + G+ Y V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 697 SQTAWIQTG-----------SIRENILFG----SPMDSHQYQETLERCSL--------IK 733
+ I+ G SI EN+ +G D E +ER SL +K
Sbjct: 79 ADLR-IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVER-SLRGAALWDEVK 136
Query: 734 D-LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD---AHTAS 789
D L+ +G LSGGQ+QR+ +AR + + D+ L+D+P SA+D H
Sbjct: 137 DRLKSHAFG-----------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIE 185
Query: 790 SLFNDYVMEALSGK-VVLLVTH 810
L ME L +++VTH
Sbjct: 186 EL-----MEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-07
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------- 693
S P + ++S +R G+ + + G +G+G++ L+ + G +P T G + + G
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQD 323
Query: 694 ------AYVSQ----TAWIQTGSIRENI------LFGSPMDS-HQYQETLERCSLIKDLE 736
Y+S+ + S++EN+ F S E I+
Sbjct: 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFN 383
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS---SLFN 793
+ IG LSGG +Q++ +AR L + +LD+P VD L N
Sbjct: 384 IKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439
Query: 794 DYVMEALSGKVVLLVTHQV-DFLPAFDSVLLMSDGEI 829
+ E LS ++LV+ ++ + L D +L+M +G I
Sbjct: 440 QFKAEGLS---IILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY----- 695
++N++L++ A+ G G GKST + + L +G I + G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 696 ----------VSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
V Q SI +N+ +G + ++ +E + + L+ D +
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE-RVEESLKAAALWDEVK 137
Query: 746 --IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
+ + + LSGGQ+QR+ +AR + ++ L+D+P SA+D + + + D + +
Sbjct: 138 DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKEDY 196
Query: 804 VVLLVTH---QVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846
+++VTH Q + + S L +GEI+ + Q+ + K+ +
Sbjct: 197 TIVIVTHNMQQATRVSKYTSFFL--NGEIIESGLTDQIFINPKDKR 240
|
Length = 250 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 737 LLPYGDNTE-------IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH--- 786
L+P GDN E + ++LSGG+ QR+ +A AL ++A YL D+P + +D
Sbjct: 49 LIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108
Query: 787 TASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828
A+ E K L+V H + L + + +GE
Sbjct: 109 NAARAIRRLSEEG--KKTALVVEHDLAVLDYLSDRIHVFEGE 148
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 36/193 (18%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI---LGEVP--HTQGTIQVYGKTAY----- 695
++NI+L++ + AI G G GKST + + + VP T G I + +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 696 ----------VSQTAWIQTGSIRENILFGSPMDSHQYQETLE-------RCSLIKDLELL 738
V Q SI +N+ +G + + ++TL+ R + I D EL
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-EL- 157
Query: 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
+ + LSGGQ+QR+ +AR L + D+ L+D+P SA+D S+L + +++
Sbjct: 158 ----KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP--ISTLKVEELVQ 211
Query: 799 ALSGK-VVLLVTH 810
L +++VTH
Sbjct: 212 ELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 1227 PPPNWPVVGKVDICDLQIRY---------RPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1277
P + PV+ +V+ DL++ + D + GIS T G +G+VG +GSGK
Sbjct: 269 LPEDAPVLLEVE--DLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326
Query: 1278 TTLRGALFRLIEPARGKILVDG 1299
+TL AL RLI +G+I DG
Sbjct: 327 STLGLALLRLIPS-QGEIRFDG 347
|
Length = 534 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 38/252 (15%)
Query: 621 IENVNRA-ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI--- 676
++NV + I +++ + + E K ++N+S+++ A+ G G GKST + +
Sbjct: 5 VQNVAQPQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61
Query: 677 --LGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENI--LFGSP-------MDSHQYQET 725
L + +G + + G+ Y ++ +R+N+ +F P D+ Y
Sbjct: 62 NDLIKNCRIEGKVSIEGEDIYEPDVDVVE---LRKNVGMVFQKPNPFPMSIYDNVAYGPR 118
Query: 726 LERCSLIKDLE------LLPYGDNTEIGER----GVNLSGGQKQRIQLARALYQDADIYL 775
+ + KDL+ L E +R ++LSGGQ+QR+ +AR L I L
Sbjct: 119 IHGANK-KDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL 177
Query: 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH---QVDFLPAFDSVLLMSDGEILRA 832
D+P SA+D +++ D +M +++VTH Q + + LM GE++
Sbjct: 178 FDEPTSALDP-ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEF 234
Query: 833 APYHQLLASSKE 844
Q+ + +E
Sbjct: 235 GQTRQIFHNPRE 246
|
Length = 258 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 58/204 (28%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYG--------- 691
++NI+L++ Q A G G GKSTLL L +G I + G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 692 ------KTAYVSQTAWIQTGSIRENILFG---------SPMDSHQYQETLERCSL---IK 733
K V Q SI +NI FG + MD + + L + +L +K
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-RVEWALTKAALWNEVK 147
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA-HTA---- 788
D ++ + G +LSGGQ+QR+ +AR + ++ LLD+P SA+D T
Sbjct: 148 D----------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 789 --SSLFNDYVMEALSGKVVLLVTH 810
+ L DY V++VTH
Sbjct: 198 LITELKQDY--------TVVIVTH 213
|
Length = 260 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
VLKGI T + G + I+G +GSGK+TL + L EP G I++DG
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGL 62
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYDEPMELM 1311
+ ++ T E G + ++G +GSGKTT + RLIEP G+IL+DG+ +++ D P+EL
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD-PVELR 74
Query: 1312 KREG 1315
++ G
Sbjct: 75 RKIG 78
|
Length = 309 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-06
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ +L RY L IS T E G G++G G+GKTTL + L++P G+I
Sbjct: 1 IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1297 VDGKLAEYDEPMELMKR------EGSLFGQL-VKEY 1325
V GK EP E+ +R E SL+ L V+E
Sbjct: 59 VLGKDI-KKEPEEVKRRIGYLPEEPSLYENLTVREN 93
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK----LAEYDEPM 1308
+L G+ G + I+G +GSGK+TL + L+ P +G+IL+DG+ L+E +E
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE-EELY 81
Query: 1309 ELMKREGSLF 1318
E+ KR G LF
Sbjct: 82 EIRKRMGVLF 91
|
Length = 263 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L+G+S E G + ++GR G+GKTTL + L+ P G+I+ DG+
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE 65
|
Length = 237 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812
LSGG+K R+ LA+ L ++ ++ LLD+P + +D + +L + ++ G V+LV+H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL-EEA-LKEYPG-TVILVSHDR 127
Query: 813 DFL 815
FL
Sbjct: 128 YFL 130
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 45/166 (27%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT---AYVSQTAWIQT 704
++S ++ PG V + G G+GKSTL I G+ GTI++ G+T AYV Q+
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQS----- 393
Query: 705 GSIRENILFGSPMDSHQ--YQETLERCSLIKD-LELLPYGDNTEIGERGV---------- 751
R+ +D ++ ++E I L+++ G E+ R
Sbjct: 394 ---RDA------LDPNKTVWEE-------ISGGLDIIQLG-KREVPSRAYVGRFNFKGSD 436
Query: 752 ------NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791
LSGG++ R+ LA+ L ++ LLD+P + +D T +L
Sbjct: 437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 48/239 (20%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------ 693
S +P++R++S ++ G+ + I G VG+ ++ ++ + G + GTI ++GK
Sbjct: 258 SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA 317
Query: 694 --------AYVSQTAWIQTG-----SIRENILFGSPMDSHQYQETL---ERCS-----LI 732
A V++ TG I N L S + +++ + L R +I
Sbjct: 318 NEAINHGFALVTEERR-STGIYAYLDIGFNSLI-SNIRNYKNKVGLLDNSRMKSDTQWVI 375
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
+ + G T+IG +LSGG +Q++ + R L +I +LD+P +D ++
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 793 NDYVMEALSGKVVLLVTHQV-DFLPAFDSVLLMSDG--------------EILRAAPYH 836
A K +++++ ++ + L D +L+MS+G EILR A H
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASLH 490
|
Length = 491 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 45/235 (19%)
Query: 648 NISLEVR---PGQKV-AICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT---------- 693
++ L V P Q + AI G G+GK++L+ AI G +G I + G+
Sbjct: 12 DLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71
Query: 694 -------AYVSQTAWI-QTGSIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNT 744
YV Q A + +R N+ +G + Q+ + + + L+ P
Sbjct: 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP----- 126
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
+LSGG+KQR+ + RAL ++ L+D+P +++D L Y +E L+ ++
Sbjct: 127 ------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP-Y-LERLAREI 178
Query: 805 ---VLLVTHQVD-FLPAFDSVLLMSDGEILRAAPYHQLLASS-----KEFQELVS 850
+L V+H +D L D V+++ G++ P ++ ASS +E S
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPWLPKEEQSS 233
|
Length = 352 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 51/192 (26%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEV-PH----------------------------- 682
R GQ + + G G GKST L + G++ P+
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 683 TQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGD 742
+G ++V K YV G + E + D + L + LEL
Sbjct: 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELL---KKKDERGKLDEL-----VDQLELRH--- 131
Query: 743 NTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVME 798
+ +R + LSGG+ QR+ +A AL +DAD Y D+P S +D A+ L + +
Sbjct: 132 ---VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188
Query: 799 ALSGKVVLLVTH 810
VL+V H
Sbjct: 189 ---DNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 39/171 (22%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE---------VPHTQGTIQVYGKTA 694
P +RN+SL V G+ V + G GSGKSTLL ++ V H + +
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 695 ------------YVSQ----TAWIQTGSIRENILFGSPMDSH----QYQETLERCSLIKD 734
YVSQ + + L + + + L R +L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
L L SGG++QR+ +AR D I LLD+P +++DA
Sbjct: 145 LWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
|
Length = 235 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 64/261 (24%), Positives = 111/261 (42%), Gaps = 59/261 (22%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKTAYVSQTA 700
K ++NIS + G+ + I G G+GKS L+ + G + T G I +Y A +
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IY-HVALCEKCG 70
Query: 701 WIQTGSI-------------RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNT--- 744
+++ S E + F + D + + +R +++ YGD+T
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIR-KRIAIMLQRTFALYGDDTVLD 129
Query: 745 -------EIGERGV------------------------NLSGGQKQRIQLARALYQDADI 773
EIG G +LSGG+KQR+ LAR L ++ +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 774 YLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
+L D+P +D TA L ++ + EA+ SG ++L +H + + D + + +GEI
Sbjct: 190 FLADEPTGTLDPQTA-KLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248
Query: 831 RAAPYHQLLASSKEFQELVSA 851
+++A F E VS
Sbjct: 249 EEGTPDEVVA---VFMEGVSE 266
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1248 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEP 1307
P LK ++ G + I+G +G+GK+TL +L L++P G+IL +G +
Sbjct: 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV-----QI 68
Query: 1308 MELMKRE 1314
+L +E
Sbjct: 69 TKLKGKE 75
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ DL Y ++ +S E G G++G G+GKTTL + L+ P GK+
Sbjct: 2 LEVTDLTKSY-GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1297 VDGKLAEYDEPMELMKREGSLFGQ 1320
+DG + +P + ++ G LFG+
Sbjct: 61 IDG-VDTVRDPSFVRRKIGVLFGE 83
|
Length = 245 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ +L Y L+LK IS T G +IG+VGR G+GK+TL + +EP G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1297 VDGKL 1301
+
Sbjct: 59 WGSTV 63
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-06
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-L 1301
+ R +L +S T G + I+G G+GK+TL AL + P G++ ++G+ L
Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66
Query: 1302 AEYDEPMELMKR 1313
A++ P EL +R
Sbjct: 67 ADWS-PAELARR 77
|
Length = 258 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 1246 YRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
Y +P L ++ E G +G++G TGSGK+TL L L++P GKI++DG
Sbjct: 12 YMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG 68
|
Length = 287 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------AYVS 697
I L+V G+ + + G G GKSTLL + G T G I + G+ A V
Sbjct: 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82
Query: 698 QT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753
Q A S+REN+ +G M + +E + + I LEL P D + L
Sbjct: 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARI--LELEPLLD-----RKPREL 135
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
SGGQ+QR+ + RA+ ++ ++L D+P S +DA
Sbjct: 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 34/193 (17%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY----- 695
+R+ + +R + G G GKST+L ++ L + +G + G+ Y
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 696 ----------VSQTAWIQTGSIRENILFGSPMDSHQ------YQETLERCSLIKDLELLP 739
V Q + SI +N+ FG ++ ++ + L+ +L +++
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK--- 140
Query: 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA 799
++ G++LSGGQ+QR+ +ARA+ + ++ LLD+P SA+D A+ + ++E
Sbjct: 141 ----DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVEL 195
Query: 800 LSGKVVLLVTHQV 812
+ LVTH +
Sbjct: 196 KKDYTIALVTHNM 208
|
Length = 261 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 3e-06
Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 67/222 (30%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLL---AAI----LGEVPHTQGTIQVYGKTAY 695
K +++ISL PG K+ + G G+GKSTLL A + GE G K Y
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI-----KVGY 74
Query: 696 VSQTAWI-QTGSIRENI-------------------LFGSPMDSHQYQETLERCSLIKD- 734
+ Q + ++REN+ + P + +++
Sbjct: 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDA--DFDALAAEQGELQEI 132
Query: 735 ------------LEL------LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776
LE+ P D ++ LSGG+++R+ L R L + D+ LL
Sbjct: 133 IDAADAWDLDSQLEIAMDALRCPPWD-AKVT----KLSGGERRRVALCRLLLEKPDMLLL 187
Query: 777 DDPFSAVDAHTASSLFN---DYVMEALSGKVVLLVTHQVDFL 815
D+P + +DA + + L DY G VV VTH FL
Sbjct: 188 DEPTNHLDAESVAWLEQFLHDY-----PGTVV-AVTHDRYFL 223
|
Length = 556 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+L Y P+ LK I+ G + I+G +G+GK+TL + RL+EP+ G IL++G
Sbjct: 6 NLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGT 64
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1239 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
+ +L + Y D PL L+ +S T G +IG+VGR G+GK+TL L +EP G++
Sbjct: 6 LENLSLAY-GDRPL-LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63
Query: 1299 G 1299
Sbjct: 64 K 64
|
Length = 530 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 1252 LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELM 1311
++ G+S T G + + G GSGKTTL + L+ PA G I +DG + + E
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
|
Length = 207 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-06
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA 700
+S P + + + VRPG+ + G G+GK+T + G+ T G V GK+ +
Sbjct: 1950 TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--- 2006
Query: 701 WIQTGSIRENILFGSPMDS---------HQY---------QETLERCS--LIKDLELLPY 740
+ +N+ + D+ H Y E +E+ + I+ L L Y
Sbjct: 2007 ---ISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY 2063
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
D SGG K+++ A AL + LLD+P + +D L+N V
Sbjct: 2064 ADRL-----AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118
Query: 801 SGKVVLLVTHQVD 813
G+ V+L +H ++
Sbjct: 2119 EGRAVVLTSHSME 2131
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 37/185 (20%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQG 685
+SIK S E+ K +R ++LEVRPG+ AI G GSGKSTL A + G + T G
Sbjct: 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 686 TIQVYGK----------------TAY--------VSQTAWIQTG--SIRENILFGSPMDS 719
T++ GK A+ VS ++QT ++R P+D
Sbjct: 59 TVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS-YRGQEPLDR 117
Query: 720 HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
+Q+ +E + + LL ++ V SGG+K+R + + + ++ +LD+
Sbjct: 118 FDFQDLME-----EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 780 FSAVD 784
S +D
Sbjct: 173 DSGLD 177
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 45/231 (19%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAYVSQTA 700
+ ++LE+ A+ G GSGKSTLL L G + + G+ +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 701 W--------------IQTGSIRENILFGSPMD---------SHQYQETLERCSLIKDLEL 737
I SI EN+ G ++ + + LE+ L +++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK- 137
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
+ LSGGQ+QR+ +ARAL ++ L D+P + +D + + +
Sbjct: 138 ------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFL 190
Query: 798 EALSGKVVLLVTHQVDFLPA-----FDSVLLMSDGEILRAAPYHQLLASSK 843
E ++LVTH P D V + G+I+ P ++ + +
Sbjct: 191 ELKKDMTIVLVTH----FPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237
|
Length = 250 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-06
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+L G+S T G + ++GR G+GKTTL + L+ P G I DG+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
+ + + RY + LK +S + G + IVG GSGK+TL L L+ P G I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1296 LVDGKLAEYDEPMELMKREGSLF 1318
V G + + ++ ++ G +F
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVF 87
|
Length = 279 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ S E G I+G +GSGK+TL L RLIEP RG+ILVDGK
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGK 90
|
Length = 386 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-06
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 33/220 (15%)
Query: 628 ISIKSASFSWEESSSKPTM-RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
IS ASF + P + +N++ + ++A+ G G GKST+L I GE+ + GT
Sbjct: 509 ISFSDASFGY---PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565
Query: 687 IQVYGKT--AYVSQTAWIQTGSIRENILF-------GSPMDSHQYQETLERCSLIKDLEL 737
+ K A SQ + + N L G P + + L + +L L
Sbjct: 566 VFRSAKVRMAVFSQHH-VDGLDLSSNPLLYMMRCFPGVP--EQKLRAHLGSFGVTGNLAL 622
Query: 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
P LSGGQK R+ A+ ++ I LLD+P + +D +L V+
Sbjct: 623 QPM----------YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL 672
Query: 798 EALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836
G VL+V+H + + D + ++S+G + P+H
Sbjct: 673 --FQGG-VLMVSHDEHLISGSVDELWVVSEG---KVTPFH 706
|
Length = 718 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L IS + E G G++G G+GKTT + +I P G++L DGK
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ G+S + + G +G+VG +G GK+TL + L EP G+IL +GK
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK 75
|
Length = 268 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-06
Identities = 95/460 (20%), Positives = 172/460 (37%), Gaps = 74/460 (16%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQ 698
++ + ++ + ++PG+ + G GSG STLL I I V G Y
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH--IGVEGVITYDGI 127
Query: 699 TAWIQTGSIRENILFGSPMDSH----QYQETLE---RC----------------SLIKDL 735
T R ++++ + D H ETL+ RC I D+
Sbjct: 128 TPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187
Query: 736 ELLPYG----DNTEIGE---RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
+ YG NT++G RGV SGG+++R+ +A A A I D+ +D+ TA
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245
Query: 789 SSLFNDYVMEALSGKVVLLVT-HQV--DFLPAFDSVLLMSDGEIL------RAAPY---- 835
A LV +Q D FD V+++ +G + +A Y
Sbjct: 246 LEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKM 305
Query: 836 ----HQLLASSKEFQELVSAHKET--AGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVS 889
++ L S + G E+ TP + + Q
Sbjct: 306 GFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETY----WRNSPEYAQLMKE 361
Query: 890 KGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVE 949
+ L + E +T + + ++ Q+K S ++S V + +N
Sbjct: 362 IDEYLDRCSESDTKEAYRESHVA--KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKG-- 417
Query: 950 NPNVSTLRLIVVYLLIGFV-STLFL-MSRSLSSVVLGIRSSKSLFSQLLNSL--FRAPMS 1005
NP+ TL ++ +++ + S++F + ++ S R F+ L N+ S
Sbjct: 418 NPSF-TLFMVFGNIIMALILSSVFYNLPKNTSDFY--SRGGALFFAILFNAFSSLLEIAS 474
Query: 1006 FYDSTPL-----GRILSRVSSD-LSIVDLDIPFSLIFAVG 1039
Y++ P+ L S+D ++ + +IPF +I +V
Sbjct: 475 MYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVV 514
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-06
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP---- 1290
+++ +L + + D ++ +S E G +GIVG +GSGK+TL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1291 ARGKILVDGK 1300
G++++DG+
Sbjct: 66 TSGEVILDGR 75
|
Length = 539 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY 1304
+K +S T G + I+G GSGK+TL L +IEP G+IL++ +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF 79
|
Length = 267 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-06
Identities = 100/455 (21%), Positives = 177/455 (38%), Gaps = 65/455 (14%)
Query: 879 KGHVEKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSI-------ASLSHL 931
K VEK+ +L K+ + + L P+ ++ L S +L
Sbjct: 21 KDEVEKELNKKGTFELYKKIKTQKIPFFL-PFKCLPASHRKLLGVSFVCATISGGTLPFF 79
Query: 932 TFVIGQILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSL 991
V G I++N L NV + +I +LIG + S V+ + K+L
Sbjct: 80 VSVFGVIMKNMNLGENVND-------IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTL 132
Query: 992 FSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDI--PFSLIFAVGATTNACSNLG 1049
+ L S+F F+D+ P ++ S + L V+ I F IF T A + LG
Sbjct: 133 KLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIF-----TYASAFLG 187
Query: 1050 VL-------AVVTWQVLFVSIPVIFL-AIRLQRYYFVTAKELMRLNGTTKSLVANHL--- 1098
+ A +T + V P+I++ + + + K + N T S++ L
Sbjct: 188 LYIWSLFKNARLTLCITCV-FPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGI 246
Query: 1099 --AESIAGAMTI-RAFEEEDRFFAKNLDLIDTNASPFFH----------SFAANEWLIQR 1145
S G TI + F ++ ++K + + N H S+A W R
Sbjct: 247 RTVVSYCGEKTILKKFNLSEKLYSKYI--LKANFMESLHIGMINGFILASYAFGFWYGTR 304
Query: 1146 LETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISV 1205
+ +IS + P F G + +S L + S+ M + Y+ S+
Sbjct: 305 I------IISDLSNQQ---PNNDFHGGSV---ISILLGVLISMFMLTIILPNITEYMKSL 352
Query: 1206 ERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEG 1263
E N + + P +VE+N + K+ +++ Y R D + K ++ T
Sbjct: 353 EATNSLYEIINRKP-LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVE-IYKDLNFTLTE 410
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
G VG +G GK+T+ + RL +P G I+++
Sbjct: 411 GKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445
|
Length = 1466 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPME 1309
L G+S + G ++G G+GK+TL L L +P G+ILVDGK + P +
Sbjct: 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD 71
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 1222 VEDNRPPPNWP----VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1277
V P + P V G V+ + + +S + +S + G + IVG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1278 TTLRGALFRLIEPARGKILVDG 1299
TTL L R+ +P G+IL+DG
Sbjct: 375 TTLINLLQRVYDPTVGQILIDG 396
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 1250 SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPME 1309
+ G I+G +GSGK+T L RLIEP G+I +DG+ P+E
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 1310 L 1310
L
Sbjct: 65 L 65
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1251 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYDE 1306
L +S G GI+G +G+GK+TL + L P G + VDG+ L E
Sbjct: 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE 75
|
Length = 339 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 51/192 (26%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGE-VP----------------HTQGT--------- 686
RPG+ V I G G GKST L + GE P +GT
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 687 ----IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGD 742
++ K YV + G + E L + ++ E +++ L L
Sbjct: 157 YEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDE------VVERLGL----- 203
Query: 743 NTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVME 798
+ +R V+ LSGG+ QR+ +A AL +DAD+Y D+P S +D A+ + +
Sbjct: 204 -ENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL--- 259
Query: 799 ALSGKVVLLVTH 810
A GK V++V H
Sbjct: 260 AEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 70/399 (17%), Positives = 153/399 (38%), Gaps = 39/399 (9%)
Query: 944 LAANVENPNVSTLRLIVVYLL-IGFVSTLFLMSRSLSSVVLGIRSSKSLF---SQLLNSL 999
L A + + T ++ L + LF++S +S + L ++ S+ + +
Sbjct: 32 LLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKI 91
Query: 1000 FRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVL 1059
P+ + R+L+ ++SD+ + S LA ++ ++
Sbjct: 92 LDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGS-AAYLAYLSPKMF 150
Query: 1060 FVSIPVIFL-----AIRLQRYY--FVTAKELM-RLNGTTKSLVANH----LAESIAGAMT 1107
+++ I + + + R Y A+E +L ++++ L A +
Sbjct: 151 LLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210
Query: 1108 IRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPG 1167
+ + + + ++ +T FH A N + + F + L
Sbjct: 211 NNLYIPDAQEYRHHIIRANT-----FHLLAVN------WSNIMLLGLIGLVFWLALSLGW 259
Query: 1168 TFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRP 1227
T + L L L + L+ ++ TL ++ ++ + AP + RP
Sbjct: 260 ASTNVAATIVLVL-LFLRTPLLSAVGILPTLLTAQVAFNKIAKL----ELAPYKADFPRP 314
Query: 1228 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRL 1287
+P +++ +++ Y D+ + I+ T + G + ++G GSGK+TL L L
Sbjct: 315 QA-FPDWKTLELRNVRFAY-QDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372
Query: 1288 IEPARGKILVDGKLAEYDEPMELMKREGSLFGQLVKEYW 1326
+P G+IL+DGK ++ + K LF + +Y
Sbjct: 373 YQPQSGEILLDGKPVSAEQLEDYRK----LFSAVFSDYH 407
|
Length = 546 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 46/249 (18%)
Query: 638 EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------ 691
+E +RN+S ++ G+ +AI GE GSGKS A++ + G +Q
Sbjct: 24 QEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRR 83
Query: 692 --KTAYVSQTAWIQTGSIRE---NILFGSPMDS-----------------HQ---YQETL 726
+ +S+ + Q +R ++F PM S HQ +E +
Sbjct: 84 SRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM 143
Query: 727 ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
+ D +P T + LSGG +QR+ +A AL + + D+P +A+D
Sbjct: 144 VEAKRMLDQVRIPEAQ-TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 787 TASSLFNDY-VMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGE---------ILRAA-- 833
+ + V++ V+ +TH + + D VL+M GE I A
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQH 262
Query: 834 PYHQ-LLAS 841
PY + LLA+
Sbjct: 263 PYTRALLAA 271
|
Length = 623 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-05
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--HTQGTIQVYGKTAYVSQTAWI- 702
+R ++ RPG A+ G G+GK+TL+ + G + +G I++ G A I
Sbjct: 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 955
Query: 703 ----QTG------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE---IGER 749
Q ++RE++++ + + + E+ + ++ L DN + +G
Sbjct: 956 GYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP 1015
Query: 750 GVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-----SGK 803
GV LS Q++R+ +A L + I +D+P S +DA A+ VM + +G+
Sbjct: 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA-----IVMRTVRNTVDTGR 1070
Query: 804 VVLLVTHQ--VDFLPAFDSVLLMSDG 827
V+ HQ +D AFD +LLM G
Sbjct: 1071 TVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 47/237 (19%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYGKTAYVSQTAWI 702
++SL++ G+ +A+ GE GSGKS +IL +P + G I+ +G++ + +
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86
Query: 703 QTGSIREN---ILFGSPMDSHQYQETLER-----CSLIKDL-------ELLPYGDNTEI- 746
+ +R N ++F PM S TLE+ SL + + E+L D I
Sbjct: 87 R--GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIR 144
Query: 747 -GERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS---SLFNDYVM 797
+ + LSGG++QR+ +A AL ++ + D+P +A+D + L +
Sbjct: 145 QAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQ 204
Query: 798 EALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI--------LRAAPYH----QLLAS 841
E G +L +TH + + D V +M +G L +AP H +LL S
Sbjct: 205 ELNMG--LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNS 259
|
Length = 529 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ VL+ I+ + E G + I+G +G GK+TL + L +P G++L+DG+
Sbjct: 8 GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR 65
|
Length = 248 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
LK ++ E G + IVG +GSGK+TL L L +P G++L++GK
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGK 67
|
Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 1214 VPSEAPE--VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPL---------VLKGISCTFE 1262
VP E + R P + V +L RY L + +S
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVR--NLSKRYGSRKGLFVRERGEVKAVDDVSFDLR 315
Query: 1263 GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
G +G+VG +GSGK+TL L L+ P+ G I+ DG+
Sbjct: 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353
|
Length = 539 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ DL RY+ D LKG+S + G K ++G G+GK+TL L + P RG++
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1297 VDGKLAEYDEPMELMKREGSLF 1318
V G+ + + + G +F
Sbjct: 64 VMGREVNAENEKWVRSKVGLVF 85
|
Length = 274 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 1246 YRPDSPLVLK---GISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
+ P LK +S G I I+G+TGSGKTT L L+ P G I
Sbjct: 12 FNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64
|
Length = 305 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 50/191 (26%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGE-VP----------------HTQGT--------- 686
+ G+ I G G GK+T + + GE +P +GT
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155
Query: 687 ----IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGD 742
I+V K YV + G +RE +L + E + +++ L L D
Sbjct: 156 YNGEIKVVHKPQYVDLIPKVFKGKVRE-LL-------KKVDERGKLDEVVERLGLENILD 207
Query: 743 NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVMEA 799
+I E LSGG+ QR+ +A AL +DAD Y D+P S +D + L + E
Sbjct: 208 R-DISE----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARL----IREL 258
Query: 800 LSGKVVLLVTH 810
GK VL+V H
Sbjct: 259 AEGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 1248 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
PD L+ I+ + G IGI+G+ GSGK+TL L L+ P +GK+LV G
Sbjct: 12 PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
|
Length = 274 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 63/353 (17%), Positives = 111/353 (31%), Gaps = 18/353 (5%)
Query: 961 VYLLIGFVSTLFLMSRSLSSV---VLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILS 1017
G + L L+ R + + G+ +L L + AP+ D ++
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIP 114
Query: 1018 RVSSDL-SIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYY 1076
++ D+ I F I A C + LA ++ + ++I I + Q
Sbjct: 115 LLTHDIDQINAFLFIFPPIAIALAIFFFC--IAYLAYLSVPMFAITISAIIIGTAAQLLA 172
Query: 1077 FVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSF 1136
F+ + + H GA ++ FA N H
Sbjct: 173 FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232
Query: 1137 AANEWLIQRLETLSATVISSAAFCMVLLPP--GTFTPGFIGMALSYGLSLNSSLVMSIQN 1194
I E + C + + I + L + L M +
Sbjct: 233 EIL-IFIAA-ENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSA 290
Query: 1195 QCTLANYIISVERLNQY---MHVPSEAPEVVEDNRPPPNWP--VVGKVDICDLQIRYRP- 1248
LA I+ +RL + + P E+ + + V +++ D+ + +
Sbjct: 291 LPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP 350
Query: 1249 --DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
L I G + IVG G GK+TL L P G+IL+DG
Sbjct: 351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-05
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 47/167 (28%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT---AYVSQTAWIQT 704
++S + PG V I G G+GKSTL I G+ GTI++ G+T AYV Q+
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVKLAYVDQS----- 395
Query: 705 GSIRENILFGSPMDSHQ--YQETLERCSLIKD-LELLPYGDNTEIGER------------ 749
R+ + D ++ ++E I L+++ G N EI R
Sbjct: 396 ---RDAL------DPNKTVWEE-------ISGGLDIIKVG-NREIPSRAYVGRFNFKGGD 438
Query: 750 -----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791
GV LSGG++ R+ LA+ L Q ++ LLD+P + +D T +L
Sbjct: 439 QQKKVGV-LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484
|
Length = 556 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 1241 DLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
L R+R V + G+S T + G G++G G+GKTT L L+EP G VD
Sbjct: 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65
Query: 1299 GKLAEYDEPMELMKREGSLFG 1319
G EP E +R G +
Sbjct: 66 G-FDVVKEPAEARRRLGFVSD 85
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 33/203 (16%)
Query: 494 EAFVNMKVLKLYAWETHFKNAIEILRNVEYK--------------WLSAVQLRKAYNGFL 539
EAF NM + +Y E +F N IE + ++Y W + + N F
Sbjct: 1027 EAFYNMNTVIIYGLEDYFCNLIE--KAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFA 1084
Query: 540 FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFS 599
+W L+ T + V + ++FTF+ T + + D A ++F
Sbjct: 1085 YWFGSFLIRRGT------ILVDDFMKSLFTFLFTGSYAGKLMSLKGDSE----NAKLSFE 1134
Query: 600 RIVNFLEAPELQSMNIRQKGNIENVNR-----AISIKSASFSWEESSSKPTMRNISLEVR 654
+ + +++R G I N+ I I +F + + P ++++
Sbjct: 1135 KYYPLIIRKSN--IDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCD 1192
Query: 655 PGQKVAICGEVGSGKSTLLAAIL 677
+ AI GE GSGKST+++ ++
Sbjct: 1193 SKKTTAIVGETGSGKSTVMSLLM 1215
|
Length = 1466 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
V+K IS T G +G+VG +GSGK+T AL RLI ++G+I DG+
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQ 347
|
Length = 529 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-05
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
LKG+S + E G + IVG +GSGK+TL L L P G++ VDG
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGT 66
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1258 SCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK----LAEYDEPMELMKR 1313
T G + I+G +G+GK+TL + PA G+IL++G + P+ ++ +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 1314 EGSLFGQL 1321
E +LF L
Sbjct: 79 ENNLFAHL 86
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+D+ DL + D+ VL G+ + G +G+VG G+GKTTL A+ + P G +L
Sbjct: 4 IDVSDLSVE-FGDTT-VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1297 VDGKLAE 1303
V G E
Sbjct: 62 VAGDDVE 68
|
Length = 402 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+ + +L RY L G+S T G G++G G+GKTTL L L P+ G I
Sbjct: 1 LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1297 VDG 1299
+DG
Sbjct: 58 IDG 60
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTAY 695
+SL G+ + G GSGKSTLL + P ++G I + K AY
Sbjct: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89
Query: 696 VSQTAWIQTG-SIRENILFG-----------SPMDSHQYQETLERCSLIKDLELLPYGDN 743
+ Q G ++RE + G D + +E + L
Sbjct: 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL------------ 137
Query: 744 TEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVD-AHTASSLFNDYVMEALS 801
+ R V+ LSGG++QR +A + QD+ LLD+P SA+D AH L + +
Sbjct: 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197
Query: 802 GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS 841
G V+ V H ++ + D ++ + GE++ +L+
Sbjct: 198 GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238
|
Length = 265 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+ I +L Y+ + + +S G G++G G+GKTT L + P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1297 VDGK 1300
++G
Sbjct: 61 INGY 64
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT 699
+ + + ++S+ P I G G GKS+LL I G + + G I Y K ++
Sbjct: 10 NIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI--YYKNCNINNI 67
Query: 700 AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD-LELLP----YGDNTE-IGERGVNL 753
A I N+ M E L+ S I + E L Y + + E+ +L
Sbjct: 68 AKPYCTYIGHNLGLKLEM---TVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSL 124
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
S G ++ + +AR + +D++LLD+ + + L N VM+A SG +VLL +H
Sbjct: 125 SSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------T 693
P + V G+ + + G+ G+GK+TLL + G + G IQ+ GK
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84
Query: 694 AYVSQ-TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752
AY+ S EN+ F + + ++ L ++ + R
Sbjct: 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSA-----LAIVGLAGYEDTLVR--Q 137
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTH 810
LS GQK+R+ LAR A ++LLD+P++ +D +L N + L G L+ TH
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE-GITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL 1301
VLKG+S + G + IVG +GSGK+TL L L P G++L +G+
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQS 68
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
+L ++ T E G I+G +GSGK+TL + L + G++ ++G+
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET 62
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----KTAYVSQTAWIQ 703
NISL V + G G+GKSTLL I G + T G I G + + I+
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSGGQKQRIQ 762
+ + EN+ + ++ + TL + E+L D T G++ S G KQR+
Sbjct: 78 SPPLYENL---TARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLG 134
Query: 763 LARALYQDADIYLLDDPFSAVD 784
+A AL + +LD+P + +D
Sbjct: 135 IAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 42/189 (22%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ--GTIQVYGKTAYVSQTAWIQ 703
++N+ + + V + G GSGKSTL+ L + + + + +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF------ 64
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIK-DLELLPYGDNTEIGERGVNLSGGQKQRIQ 762
+D Q LI L L G LSGG+ QR++
Sbjct: 65 -------------IDQLQ--------FLIDVGLGYLTLGQKLS------TLSGGELQRVK 97
Query: 763 LARALYQDAD--IYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPAF 818
LA L+ + +++LD+P + + + L V++ L G V+L+ H +D L +
Sbjct: 98 LASELFSEPPGTLFILDEPSTGLHQQDINQLLE--VIKGLIDLGNTVILIEHNLDVLSSA 155
Query: 819 DSVLLMSDG 827
D ++ G
Sbjct: 156 DWIIDFGPG 164
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-L 1301
+ + +VL +S G I+G G+GK+TL + RL++ G+I +DG L
Sbjct: 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65
Query: 1302 AEYDEPMELMKR 1313
EL K+
Sbjct: 66 TSTPSK-ELAKK 76
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
LKGIS T E G +G +G G+GKTT L L++P G++ V G L + + ++
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKRRKKFLR 94
Query: 1313 REGSLFGQLVKEYW 1326
R G +FGQ + +W
Sbjct: 95 RIGVVFGQKTQLWW 108
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG----------------T 686
+P + N+S +V PG+ I G G+GKSTLL+ I G+ H QG T
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD--HPQGYSNDLTLFGRRRGSGET 330
Query: 687 I-QVYGKTAYVSQTAWIQ---TGSIRENILFGSPMDS-HQYQETLERCSLIKD--LELLP 739
I + YVS + + + S+R IL G DS YQ +R + L++L
Sbjct: 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGF-FDSIGIYQAVSDRQQKLAQQWLDIL- 388
Query: 740 YGDNTEIGERGV-NLSGGQKQRIQL-ARALYQDADIYLLDDPFSAVD 784
G + + +LS GQ QR+ L RAL + + +LD+P +D
Sbjct: 389 -GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 1252 LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPA---RGKILVDGK 1300
+L +S E G + I+G +GSGKTTL A+ +E G+IL +G+
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 1258 SCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK----LAEYDEPMELMKR 1313
G + I+G +G+GK+TL + IEPA G I V+ + LA Y P+ ++ +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 1314 EGSLFGQL 1321
E +LF L
Sbjct: 78 ENNLFAHL 85
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
+L G+S G + I+G G+GK+TL AL + P G++ ++G P EL +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1313 REGSL 1317
L
Sbjct: 76 HRAVL 80
|
Length = 259 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYDE 1306
+LKG+ + G + IVG +GSGK+TL L L +P+ G++ + G+ L + DE
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDE 79
|
Length = 228 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-04
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 20/91 (21%)
Query: 753 LSGGQKQRIQLARALYQDAD------IYLLDDPFSAVD-AHTASSLFNDYVMEAL----- 800
LSGG++QR+QLAR L Q + LLD+P SA+D AH V+
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH------VLRLARQLAH 188
Query: 801 -SGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
G V++V H ++ + D ++L+ G +
Sbjct: 189 ERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219
|
Length = 258 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 1250 SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
L L ++ + G + I+GR GSGK+T+ + L+ P+ GK+ VDG
Sbjct: 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71
|
Length = 280 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 46/220 (20%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-----LGEVPHTQGTIQVYGKTAY----- 695
++++S++ AI G G GKST+L +I L G I + Y
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 696 -----------VSQTAWIQTGSIRENILFGSPMDSH----QYQETLERCSLIKDLELLPY 740
+ SI +N++ G ++ + E +E +K + L
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESS--LKRVALW-- 135
Query: 741 GDNTEIGER----GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
E+ +R + LSGGQ+QR+ +AR + ++ L+D+P SA+D S+L + +
Sbjct: 136 ---DEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP--ISTLKIEEL 190
Query: 797 MEALSGK-VVLLVTHQV-------DFLPAFDSVLLMSDGE 828
+E L K +++VTH + D+ F L+ GE
Sbjct: 191 IEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230
|
Length = 252 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 39/187 (20%)
Query: 660 AICGEVGSGKSTLLAAI----LGEVPHTQGTIQVYGKTAYVSQTAWI----QTGSIRENI 711
ICG G+GKST+L AI G+ P + A TA + Q G + +
Sbjct: 32 LICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRV 91
Query: 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSGGQKQRIQLARAL--- 767
+D Q+ + LLP G+ R V LSGG+ L+ AL
Sbjct: 92 ERSRGLDYDQFTRIV----------LLPQGEFDRFLARPVSTLSGGETFLASLSLALALS 141
Query: 768 --YQDA-----DIYLLDDPFSAVDAHTASSLFNDYVMEAL-----SGKVVLLVTHQVDFL 815
Q+ + +D+ F +D + V AL ++V +++H +
Sbjct: 142 EVLQNRGGARLEALFIDEGFGTLDPEAL-----EAVATALELIRTENRMVGVISHVEELK 196
Query: 816 PAFDSVL 822
L
Sbjct: 197 ERIPQRL 203
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 1238 DICDLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ +L + + D+ +V + G+S + G +GIVG +GSGK+ L A+ L+ +I
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 1296 LVDGKL 1301
V G++
Sbjct: 63 -VGGEI 67
|
Length = 316 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG----K 1300
Y P L+ +S G + + G +G+GK+TL ++ P RGKILV+G +
Sbjct: 10 AY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 1301 LAEYDEPMELMKREGSLF 1318
L + P L ++ G +F
Sbjct: 69 LKGREIPF-LRRQIGVVF 85
|
Length = 223 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
+++ DL RY VLKG+S G I I+G +GSGK+T + L +P+ G I
Sbjct: 6 ALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1296 LVDG 1299
V+G
Sbjct: 64 RVNG 67
|
Length = 256 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 1252 LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
L +K S E G I+G +GSGK+T+ L RLIEP RG++L+DG
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDG 89
|
Length = 400 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+L Y D LKGI+ + G I+G G+GK+TL L +++P+ G+IL DGK
Sbjct: 10 ELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68
Query: 1301 LAEYDEP--MELMKREGSLF 1318
+Y M+L + G +F
Sbjct: 69 PIDYSRKGLMKLRESVGMVF 88
|
Length = 283 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 1216 SEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1275
+EAP V + + P P V+I Q Y L+ ++ T + G +GI G TGS
Sbjct: 295 AEAPVVKDGSEPVPEGRGELDVNI--RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352
Query: 1276 GKTTLRGALFRLIEPARGKIL 1296
GK+TL + R + + G I
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIR 373
|
Length = 569 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE----PARGKILVDGK 1300
LK +S + G GI+GR+G+GK+T L R I P G +LVDG
Sbjct: 20 ALKDVSLSVPKGEIFGIIGRSGAGKST----LIRCINGLERPTSGSVLVDGT 67
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEP 1307
+S + + G ++G G+GK+TL LF L +P G+I VDGK P
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP 73
|
Length = 501 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VL +S + E G +G++GR+G GK+TL L L +PA+G + G + + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRG------QDLYQLD 79
Query: 1313 REG 1315
R+
Sbjct: 80 RKQ 82
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 43/226 (19%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707
N+SLEV+ G+ I G G+GK+TL I G + T G + V +V T G
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 708 RENILFG---SPMDSHQYQETLERCSLIKDLEL--------------------------L 738
R G D + ++ L+ + LEL L
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421
Query: 739 P-YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM 797
Y D GER R+ LA+ L ++ I +LD+P +D T + ++
Sbjct: 422 DKYPDELSEGER---------HRVALAQVLIKEPRIVILDEPTGTMDPITKVDV-THSIL 471
Query: 798 EALS--GKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLA 840
+A + ++V+H +DF L D LM DG+I++ +++
Sbjct: 472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NIS EV G+ V I G GSGKSTL I G +GT+ + G A ++ ++ + Q
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 704 TGSIRENI-LFGSPMDSHQYQETLERCSLIKDL--ELLPYGDNTEIGERGV-NLSGGQKQ 759
I ENI L G M + + IK++ E++ + D + + V S G K
Sbjct: 100 LTGI-ENIELKGLMMGLTKEK--------IKEIIPEIIEFADIGKFIYQPVKTYSSGMKS 150
Query: 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-----GKVVLLVTHQVDF 814
R+ A +++ + DI ++D+ S D F ++ ++ GK + ++H +
Sbjct: 151 RLGFAISVHINPDILVIDEALSVGD-----QTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205
Query: 815 LPAF 818
+ +F
Sbjct: 206 VKSF 209
|
Length = 549 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 36/256 (14%)
Query: 592 IQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEES--SSKPTMRNI 649
+ A VAF+++ AP + + +++ +F+++++ S P I
Sbjct: 290 LSAQVAFNKLNKLALAPYKAEFPR---PQAFPDWQTLELRNVTFAYQDNGFSVGP----I 342
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------AYVSQTAWI 702
+L ++ G+ + + G GSGKSTL + G G I + GK Y + +
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402
Query: 703 QTGSIRENILF-------GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755
T + LF G P + ++ LER + LEL ++ I + LS
Sbjct: 403 FT----DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL----EDGRI--SNLKLSK 452
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV--MEALSGKVVLLVTHQVD 813
GQK+R+ L AL ++ DI LLD+ + D H + + ++ + GK + ++H
Sbjct: 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM-GKTIFAISHDDH 511
Query: 814 FLPAFDSVLLMSDGEI 829
+ D +L M +G++
Sbjct: 512 YFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 20/228 (8%)
Query: 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYV 696
W +P ++ ++L+ + G G GKSTL + G + +G + GK
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 697 SQTAWIQTGSIRENI--LFGSPMDSHQYQE-------TLERCSLIKDL------ELLPYG 741
S+ + ++R+ + +F P Y + +L + + E L
Sbjct: 68 SKRGLL---ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV 124
Query: 742 DNTEIGERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
D + + LS GQK+R+ +A AL A LLD+P + +D + +
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 801 SGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASSKEFQE 847
G V++ +H +D + D+V ++ G+IL ++ A ++ ++
Sbjct: 185 QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQ 232
|
Length = 271 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+LKGIS + G +GI+G +GSGK+TL L + P G + +DG
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG 397
|
Length = 580 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
I+G +GSGK+TL + RLIEP GK+L+DG+
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ 86
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
K+++ DL RY VLKG+S G I I+G +GSGK+T + L +P+ G I
Sbjct: 5 KLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62
Query: 1296 LV-----------DGKLAEYD-EPMELMKREGSLFGQLVKEYWSHLHSAES 1334
+V DG+L D + L++ ++ Q WSH+ E+
Sbjct: 63 VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLEN 112
|
Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1248 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
P+ L GI+ + G + +VG +G+GK+TL +++ P G I V+G+
Sbjct: 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1241 DLQIRYRPDSP---LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ RY+ +P L ++ + G + I+G TGSGK+TL L L++P G +
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV 64
|
Length = 290 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 73/368 (19%), Positives = 130/368 (35%), Gaps = 60/368 (16%)
Query: 955 TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAP---MSFYDSTP 1011
T+ + +YL +G + L RS V +G + +L + + F A S
Sbjct: 49 TVLALGLYLFLGLLDAL----RSFVLVRIGEKLDGALNQPIFAASFSATLRRGSGDGLQA 104
Query: 1012 LGRILSRVSSDLS----IVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIF 1067
L R L ++ L+ D P+ I+ + +G+LA+ VL
Sbjct: 105 L-RDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVG------ 156
Query: 1068 LAIRLQRYYFVTAKELMRLNGTTKSLVANHL--AESIA-----GAMTIRAFEEEDRFFAK 1120
LA+ R KE + +L + L AE I G +T R ++ +
Sbjct: 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSA 216
Query: 1121 NLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSY 1180
D + + R+ S + A L G TPG +
Sbjct: 217 QSAASDRAG--MLSNLSK----YFRIVLQSLVLGLGA----YLAIDGEITPGMMIA---- 262
Query: 1181 GLSLNSSLVM---------SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNW 1231
S+++ +I + + +RLN+ + + P P
Sbjct: 263 -----GSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPEPE- 314
Query: 1232 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPA 1291
G + + ++ I L+GIS + + G + I+G +GSGK+TL + + P
Sbjct: 315 ---GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT 371
Query: 1292 RGKILVDG 1299
G + +DG
Sbjct: 372 SGSVRLDG 379
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+++ +++ + S VLK ++ E G + ++G +G GK+TL + L EP G+IL
Sbjct: 4 LELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1297 VDGK 1300
+DG+
Sbjct: 62 IDGR 65
|
Length = 338 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPME 1309
L ++ G + ++G +G GKTT + L EP G+I + G+ P +
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI----EPAR 1292
++I ++ + + IS + G + ++G +G GKTT L R+I +P+
Sbjct: 6 LEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTT----LLRMIAGFEQPSS 59
Query: 1293 GKILVDGK 1300
G+IL+DG+
Sbjct: 60 GEILLDGE 67
|
Length = 352 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 1249 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD--- 1305
+ +LK I+ GI+G +GSGK+TL L RLIE KI VDGK+ +
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 1306 ---EPMELMKREGSLFGQ 1320
+ ++L K G +F Q
Sbjct: 81 FQIDAIKLRKEVGMVFQQ 98
|
Length = 257 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
DL RY+ D P VLKG++ F G+VG G GK+TL L L+ P +G +L GK
Sbjct: 6 DLWFRYQ-DEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1301 LAEYDE 1306
+Y +
Sbjct: 64 PLDYSK 69
|
Length = 271 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK--VVLLVTH 810
LS G+ ++ L +AL + D+ +LD+PF +D + L ++ +L ++LV +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE--LLASLHQSGITLVLVLN 193
Query: 811 QVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQELVS--AHKETAGSERLAEV-TP 866
+ D +P F +++D + ++L Q LV+ AH E +L E P
Sbjct: 194 RFDEIPDFVQFAGVLADCTLAETGEREEILQ-----QALVAQLAHSEQLEGVQLPEPDEP 248
Query: 867 SQKSGMPAKE 876
S + +PA E
Sbjct: 249 SARHALPANE 258
|
Length = 490 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 8e-04
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 1249 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
++ LK I+ G + IVG GSGK++L AL +E G + V G +A
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA 69
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 34/210 (16%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-HTQGTIQVYGKTAYVSQTA-WIQTG 705
++S +R G+ + + G VG+G++ L+ A+ G P +G + + GK + A I+ G
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 706 -----------------SIRENIL--------FGSPMDSHQYQETLERCSLIKDLELLPY 740
+ +NI F +D+ + + I+ L++
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSA--IQRLKVKTA 395
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
IG LSGG +Q+ LA+ L + + +LD+P VD ++ A
Sbjct: 396 SPFLPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451
Query: 801 SGKVVLLVTHQV-DFLPAFDSVLLMSDGEI 829
G +++V+ ++ + L D VL++ +G++
Sbjct: 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD 813
SGG + RI LARAL+ + D+ LLD+P + +D H A Y+++ K ++V+H +
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH-AVLWLETYLLKW--PKTFIVVSHARE 402
Query: 814 FL 815
FL
Sbjct: 403 FL 404
|
Length = 718 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 38/198 (19%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTG 705
+I L + PG ++ + G G+GKSTL+ + GE+ G I + K Y +Q Q
Sbjct: 330 SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH---QLE 386
Query: 706 SIRENILFGSPMDSHQYQETLERCSLIKDLE--LLPY-------GDN-TEIGERGVNLSG 755
+R + SP+ + L R + ++LE L Y GD TE R SG
Sbjct: 387 FLRAD---ESPL------QHLARLA-PQELEQKLRDYLGGFGFQGDKVTEETRR---FSG 433
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL---SGKVVLLVTHQV 812
G+K R+ LA ++Q ++ LLD+P + +D +L EAL G +V +V+H
Sbjct: 434 GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL-----TEALIDFEGALV-VVSHDR 487
Query: 813 DFLPA-FDSVLLMSDGEI 829
L + D + L+ DG++
Sbjct: 488 HLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 9e-04
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
Q+ Y +L IS + G I I G +G GK+TL + LI P G +L +G+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 65
|
Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1246 YRPDSPLVLKG---ISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
Y P +P+ KG IS E G + +VG TGSGK+TL L++P+ G I + G
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGY 69
|
Length = 287 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ +G+S T G + + G G GKTTL L L+ P G++ +G
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT 62
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L+ IS + E G + +VG +G GK+TL + L P G++LVDG+
Sbjct: 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE 66
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY 1304
+K +S T G + I+G GSGK+TL L +IEP G++L+D +
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF 79
|
Length = 267 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+ ++ FE G IVG+TGSGK+TL + L++P G + VD
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD 68
|
Length = 286 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 1246 YRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+ L++ G+ T G G++G GSGK+TL L + P G + + G
Sbjct: 9 WSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG 62
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1235 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRL 1287
GK++I D+ RY RP+ P + K ++ + + IVG TGSGK+T+ L R
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 35/210 (16%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS 706
RNISLEVR G+ + + G VG+G++ L + G P G I + GK I S
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE--------INALS 331
Query: 707 IRENILFGS---PMDSHQYQETLER------CSLIKDLE--LLPYGDNTEIGER-----G 750
+ + G P D L+ C+L + + + ER
Sbjct: 332 TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN 391
Query: 751 V----------NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
+ LSGG +Q++ +A+ L + ++D+P VD + ++ A
Sbjct: 392 IKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451
Query: 801 SGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829
VL ++ ++ + D VL+M GEI
Sbjct: 452 QNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKG 1256
TL + ++ +LN+ P +A + P+W +++ ++ Y D+ +
Sbjct: 288 TLLSAQVAFNKLNKLALAPYKAE--FPRPQAFPDWQ---TLELRNVTFAY-QDNGFSVGP 341
Query: 1257 ISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
I+ T + G + ++G GSGK+TL L L +P G+IL+DGK
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
|
Length = 547 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
++LSGGQ+QR+ +AR L + LLD+P SA+D +++ + + E +++
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP-ISNAKIEELITELKEEYSIII 218
Query: 808 VTHQV-DFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
VTH + L D +G+++ Q+ S K+
Sbjct: 219 VTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQ 256
|
Length = 268 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 48/176 (27%)
Query: 645 TMR--------NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---- 692
MR N++LEVR + V++ G G+GK+T+ + G T GTI + G+
Sbjct: 12 MMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG 71
Query: 693 ------------------------TA----YVSQTAWIQTGSIRENILFGSPMDSHQYQE 724
T V+Q ++TG L +P E
Sbjct: 72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSG--LLKTPAFRRAESE 129
Query: 725 TLERCSL-IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
L+R + ++ + LL + N + G NL+ GQ++R+++AR + +I +LD+P
Sbjct: 130 ALDRAATWLERVGLLEHA-NRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEP 180
|
Length = 255 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 36/209 (17%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--- 702
++ ++ +RPG+ + G G+GKSTLL I G + G I G + +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 703 --QTGSIREN-----------------ILFGSPMDS--HQYQETLERCSLIKDLELLPYG 741
Q G I ++ I+ G+ D + L++ L+ + P
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-- 135
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
+ LSGG++QR+ +ARA+ + L D+P +D + + +
Sbjct: 136 ---------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186
Query: 802 GKVVLLVTHQVDFLPAFD-SVLLMSDGEI 829
G VL+ TH + + +L +SDG +
Sbjct: 187 GVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VLK I+ E G + I G TGSGKT+L + +EP+ GKI G+++ + +M
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 1313 ---REGSLFGQLVKEY 1325
+E +FG EY
Sbjct: 112 GTIKENIIFGVSYDEY 127
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L+ +S T G + ++G +G GKTTL + + P+RG I ++G+
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
|
Length = 259 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGAL--FRLIEPARGKILVDGK 1300
+LK +S + G I+G +G+GK+TL AL R G++L++G+
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR 73
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ Y L+LK +S + G +I IVG G+GK+TL L + P G +
Sbjct: 326 NVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
|
Length = 530 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 1258 SCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK----LAEYDEPMELMKR 1313
TF G IVG +GSGK+TL + P G++L++G D P+ ++ +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 1314 EGSLFGQL 1321
E +LF L
Sbjct: 78 ENNLFAHL 85
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ IS G G++G G+GKTT + L+EP G+I +G
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGG 64
|
Length = 300 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYD-EPMEL 1310
VLKGIS G + IVG +GSGK+TL L L +P G V G+ +A D + +
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1311 MKREGSLFGQLVKEY--WSHLHSAE 1333
++RE FG + + Y SHL +A+
Sbjct: 83 LRREH--FGFIFQRYHLLSHLTAAQ 105
|
Length = 648 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L +S G G++G +G+GK+TL + L P G++LVDG+
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQ 67
|
Length = 343 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 753 LSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLL 807
LSGG+K+ LA L + +Y+LD+ +D +L + ++E + G V++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIV 136
Query: 808 VTHQVDFL 815
+TH +
Sbjct: 137 ITHLPELA 144
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
V + ++ GH I+G G GK+TL L RL+ PA G + +DG+ ++ E+ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1313 REGSL 1317
R G L
Sbjct: 82 RIGLL 86
|
Length = 265 |
| >gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
V + + I G GSGK+TLL A+L +P +
Sbjct: 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDE 53
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. Length = 186 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VLK IS E G + + G TGSGK++L + +EP+ GKI G+++ + +M
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP 500
Query: 1313 ---REGSLFGQLVKEY 1325
++ +FG EY
Sbjct: 501 GTIKDNIIFGLSYDEY 516
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.003
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L +S + G G++G G+GKTTL + + P G +L DG+
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE 62
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ +S G +G++G G+GKTTL + +P+ G ++ G+
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR 66
|
Length = 250 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297
VL GI + G + I+G +GSGKTTL + L +P G I V
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62
|
Length = 250 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 1243 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI----EPARGKILVD 1298
+ + L G+S + G ++G +G GKTT L RLI P G+IL+D
Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTT----LLRLIAGFETPTSGEILLD 60
Query: 1299 GK 1300
GK
Sbjct: 61 GK 62
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 38/212 (17%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-HTQGTIQVYGKTAYVSQTA-WIQTG 705
++S +R G+ + I G VG+G++ L+ + G P +G I + GK + I G
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339
Query: 706 -----------------SIRENIL--------FGSPMDSHQYQETLERCSLIKDLELLPY 740
+ +NI GS +D +T+ I+ L++
Sbjct: 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILE--SIQRLKVKTA 397
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA---HTASSLFNDYVM 797
I LSGG +Q+ LA+ L + I +LD+P +D + L N V
Sbjct: 398 SPELAIA----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453
Query: 798 EALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+ ++ ++++ + + L D VL+M +G++
Sbjct: 454 QGVA--IIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297
VLK +S T G + + G +G+GK+TL +L+ P G+ILV
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1335 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.94 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.94 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.93 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.92 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.91 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.91 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.89 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.88 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.88 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.88 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.88 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.86 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.86 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.85 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.85 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.85 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.85 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.83 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.82 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.82 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.81 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.81 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.78 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.77 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.75 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.75 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.74 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.74 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.72 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.72 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.72 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.71 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.69 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.68 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.65 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.65 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.64 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.63 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.63 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.63 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.63 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.62 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.62 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.62 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.62 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.61 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.61 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.61 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.61 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.6 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.6 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.6 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.6 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.6 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.6 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.59 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.59 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.59 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.59 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.59 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.59 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.59 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.59 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.59 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.59 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.59 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.59 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.59 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.59 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.59 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.58 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.58 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.58 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.58 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.58 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.58 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.58 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.58 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.58 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.57 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.57 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.57 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-246 Score=2325.46 Aligned_cols=1090 Identities=42% Similarity=0.687 Sum_probs=1015.4
Q ss_pred CCCcccCC--hhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 000713 232 ITGFAAAG--FFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHW 309 (1335)
Q Consensus 232 ~~p~~~a~--~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~ 309 (1335)
++|.+.++ |+|++||||++|++++|||++|+.+|+|+++++|+++.++++|+++|+++.++.+ ++|+++++++++||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~-~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSG-KKPSLLRALLRTFG 200 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcccc-CCcHHHHHHHHHHH
Confidence 34444444 4999999999999999999999999999999999999999999999999875433 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 310 RDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAA 389 (1335)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~ 389 (1335)
+++++.++++++.+.+.|++|++|+.+++|+++++.+.+.||+||+++|++.++++++.|||+|..+++|+|+|++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999987778899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 390 IYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTP 469 (1335)
Q Consensus 390 Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~ 469 (1335)
||+|+|++++.+++++++|+|+|+|++|++|++++++++|.+|++|+|+++++++||..+|+++++|++++++++|+|.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHH
Q 000713 470 LAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVST 549 (1335)
Q Consensus 470 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~ 549 (1335)
++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..|..+++.++++++|+++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccE
Q 000713 550 ATFGACY-FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAI 628 (1335)
Q Consensus 550 ~tF~~~~-l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i 628 (1335)
+||++|+ +.++.+||++||+++|+||+|+.|+.++|..++.++|++||++|+++||..+|.+++..++.+..+ .+..|
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~-~~~~i 519 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEA-GENAI 519 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCC-CCceE
Confidence 9999999 778899999999999999999999999999999999999999999999999999887665333222 56689
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCHH
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIR 708 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~ 708 (1335)
+++|++|+|++++..++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||+|+|||
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999987555679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 709 eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
|||+||.+||+++|++++++|+|++|++.+|.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|++
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhccccccccCCCc
Q 000713 789 SSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQ 868 (1335)
Q Consensus 789 ~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 868 (1335)
+|||++|+++.+++||+|+|||+++++++||.|++|+||+|.++|+|+|+++.+..+.++..+.......+ ........
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 758 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE-ASEKDLES 758 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc-cccccccc
Confidence 99999999999999999999999999999999999999999999999999998888888743322111111 00000000
Q ss_pred CCCCCc---cc--ccccc-cccccccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhH
Q 000713 869 KSGMPA---KE--IKKGH-VEKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNS 942 (1335)
Q Consensus 869 ~~~~~~---~~--~~~~~-~~~~~~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 942 (1335)
...... +. ..+.+ .+..+..++..+++++|+|++|.|+|++|+.|+++.+|++.++++++++++.++.++++||
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~ 838 (1381)
T KOG0054|consen 759 GESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNY 838 (1381)
T ss_pred cccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 00000 0111122235678889999999999999999999988888888888899999999999999
Q ss_pred hhh-ccccC---CC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhH
Q 000713 943 WLA-ANVEN---PN--VSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRIL 1016 (1335)
Q Consensus 943 wl~-w~~~~---~~--~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIl 1016 (1335)
||+ |.+++ .. .+..+|+++|++++++++++.+++++.+..++++||++||++|+++|+||||+|||+||+||||
T Consensus 839 WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRIL 918 (1381)
T KOG0054|consen 839 WLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRIL 918 (1381)
T ss_pred HHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchh
Confidence 999 65543 11 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHH
Q 000713 1017 SRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVAN 1096 (1335)
Q Consensus 1017 nRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s 1096 (1335)
||||+|++.||..+|..+..++.++++++++++++++++|+++++++|+.++|+++|+||+++||||||||+++|||+|+
T Consensus 919 NRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~s 998 (1381)
T KOG0054|consen 919 NRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYS 998 (1381)
T ss_pred hhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 000713 1097 HLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM 1176 (1335)
Q Consensus 1097 ~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Gl 1176 (1335)
||+||++|++|||||++|++|.++|++++|.|++++|+..++|||+++|+|++|+++++++++++++.+.+..+||.+|+
T Consensus 999 h~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGL 1078 (1381)
T KOG0054|consen 999 HFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGL 1078 (1381)
T ss_pred hHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCcccc
Q 000713 1177 ALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKG 1256 (1335)
Q Consensus 1177 alsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~ 1256 (1335)
+++||+++++.++|++|+.+++|++|+|||||.||+++|+|+|+..++.+||++||++|+|+|+|+++||||++|+||||
T Consensus 1079 slsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~ 1158 (1381)
T KOG0054|consen 1079 SLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKG 1158 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcC
Confidence 99999999999999999999999999999999999999999888888878999999999999999999999999999999
Q ss_pred ceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHh
Q 000713 1257 ISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKE 1324 (1335)
Q Consensus 1257 is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE 1324 (1335)
|||+|+||||||||||||||||||++||||++||.+|+|.|||+||++ |++++++||||+||+||||+
T Consensus 1159 is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1159 ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccc
Confidence 999999999999999999999999999999999999999999999997 67999999999999999995
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-185 Score=1865.73 Aligned_cols=1288 Identities=29% Similarity=0.469 Sum_probs=1071.6
Q ss_pred ccCCCC--CCCccc--ccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc--cchhhHHHHHHHHH
Q 000713 13 GCSDIG--GKPCHN--AFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKSSSKSLYIPVRLQ--RFTTLQKVAAVVNG 86 (1335)
Q Consensus 13 ~c~~~~--~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 86 (1335)
.|+++. +|++.+ .+...+|| ++++++.+++.+|++++++..++...+.....++..+ .........++||.
T Consensus 9 ~c~~~~~~~~~~~~~~~~~~~~~c---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1622)
T PLN03130 9 YCRPVPNGVWAKKVDNAFGAYTPC---ATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCT 85 (1622)
T ss_pred hcCCCccCCCCcccccccCCCCcc---HHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHH
Confidence 564332 344442 35558999 9999999999999999999988866331111112212 11134445555555
Q ss_pred HHHHHHHHHHHHHHHHhhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHH---HHHHHHHH
Q 000713 87 CLGIVYLCLATWILEEKLRK-THTALPLNWWLLVLFQGATWLLVTLIVSLRGNH--LPRAPMRLLSVLS---FLFAGIVC 160 (1335)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~---~~~~~~~~ 160 (1335)
...+++...+++.+. .... +........++.+++..++++++..+...++.+ .+++.+++||++. +++.++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 162 (1622)
T PLN03130 86 AEPLFRLVMGISVLN-LDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLV-- 162 (1622)
T ss_pred HHHHHHHHHHhhhhc-cccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHH--
Confidence 555555444433321 1111 122222232555677777777666654444433 6899999999999 666665
Q ss_pred HHHHHHHhhcccccccchhhhhhHHHHHHHHHHH-hhccccccccccccCCCccCCCCCCc---CCCCCCCCCCCCCCcc
Q 000713 161 VLSIFAAILSKDVTIKTALDVLSFPGAILLLLCA-YKVFKHEETDVKIGENGLYAPLNGEA---NGLGKGDSVSQITGFA 236 (1335)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~p~~ 236 (1335)
........+... ..++..+.+.+.+.++. +... +..+.+ .+.|...+. ..|++...+.+++||+
T Consensus 163 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 230 (1622)
T PLN03130 163 -LSVKEYYSSFVL----YLYISEVAAQVLFGILLLVYFP-NLDPYP------GYTPIGSESVDDYEYEELPGGEQICPER 230 (1622)
T ss_pred -HHHHHHHhcccc----ceehhHHHHHHHHHHHHHHHHh-cCCCCc------ccccccccccccccccCCcccCCCCccc
Confidence 122222222100 11333333333322222 1111 111100 121111000 0012223346779999
Q ss_pred cCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 000713 237 AAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRDIFMSG 316 (1335)
Q Consensus 237 ~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~ 316 (1335)
+||+|||++|+|++|++++|||++|+.+|||+|+++|+++.++++|++.|+++.+ +++|+|+++++|+||+.++.++
T Consensus 231 ~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~ 307 (1622)
T PLN03130 231 HANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNNSLGGRFWLGG 307 (1622)
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997743 3468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000713 317 FFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLR 396 (1335)
Q Consensus 317 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ 396 (1335)
+++++.+++.+++|++++.+++++.+++ ..+.|+.++++++++.++.+++.++|++...++|+++|+++...+|+|.++
T Consensus 308 ~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~ 386 (1622)
T PLN03130 308 FFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLR 386 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997654 346688888888888888888889999999999999999999999999999
Q ss_pred CChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 397 LSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHK 476 (1335)
Q Consensus 397 ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~ 476 (1335)
++...+++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++
T Consensus 387 l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~ 466 (1622)
T PLN03130 387 LTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQK 466 (1622)
T ss_pred CChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 000713 477 FQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACY 556 (1335)
Q Consensus 477 ~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~ 556 (1335)
.+++.|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..+++...|.++++++|++|.
T Consensus 467 ~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~ 546 (1622)
T PLN03130 467 LTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFT 546 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888889889999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEEE
Q 000713 557 FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFS 636 (1335)
Q Consensus 557 l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~ 636 (1335)
+.++++|++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|...... .+... ....|+++|++|+
T Consensus 547 ~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~-~~~~I~~~nvsf~ 623 (1622)
T PLN03130 547 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--PPLEP-GLPAISIKNGYFS 623 (1622)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--CcccC-CCCceEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999998766432211 11011 2346999999999
Q ss_pred ecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC-cEEEEcCeEEEEecCCcCCCCCHHHHhccCC
Q 000713 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-GTIQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 637 ~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~ 715 (1335)
|++++++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |+|.++|+++||+|+||++++||||||+||+
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~ 703 (1622)
T PLN03130 624 WDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGS 703 (1622)
T ss_pred ccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCC
Confidence 976445689999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~ 795 (1335)
++++++|++++++|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++++
T Consensus 704 ~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~ 783 (1622)
T PLN03130 704 PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783 (1622)
T ss_pred cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhccccccccCCCc-CCCCC-
Q 000713 796 VMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQ-KSGMP- 873 (1335)
Q Consensus 796 ~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~- 873 (1335)
+++.++|+|+|+|||+++.++.+|+|++|++|+|++.|+++|+.++.+.+.++...+....+..+........ .....
T Consensus 784 l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1622)
T PLN03130 784 IKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPV 863 (1622)
T ss_pred hhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccccccccccccc
Confidence 9887889999999999999999999999999999999999999988888888776543211110000000000 00000
Q ss_pred cc-ccccc--ccc-cccccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccc
Q 000713 874 AK-EIKKG--HVE-KQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANV 948 (1335)
Q Consensus 874 ~~-~~~~~--~~~-~~~~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~ 948 (1335)
.. +.+.. ... ..++......+.++|+++.|.|++++|+.|+++.++.+.+.+++++.++.++..+++++|++ |.+
T Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~ 943 (1622)
T PLN03130 864 ANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTD 943 (1622)
T ss_pred cccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00000 000 00011112345677889999999999999999877766666666777788889999999999 654
Q ss_pred cC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHH
Q 000713 949 EN--PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIV 1026 (1335)
Q Consensus 949 ~~--~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~v 1026 (1335)
+. .......|+++|++++++..++.+++.+++...+.++++++|++++++++++||+|||++|+|||+|||++|++.+
T Consensus 944 ~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~i 1023 (1622)
T PLN03130 944 QGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDI 1023 (1622)
T ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHH
Confidence 32 1223567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchH
Q 000713 1027 DLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAM 1106 (1335)
Q Consensus 1027 D~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~ 1106 (1335)
|..+|..+..++..++.++++++++++.+|+++++++|++++++.++++|.+++|+++|++..++||+++||+|+++|+.
T Consensus 1024 d~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~ 1103 (1622)
T PLN03130 1024 DRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLS 1103 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CcCHHHHHHHHHHHH
Q 000713 1107 TIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPG----TFTPGFIGMALSYGL 1182 (1335)
Q Consensus 1107 tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~----~~~~g~~Glalsy~l 1182 (1335)
|||||+++++|.+.+.+.+|.++++.+.....++|+++|+++++++++++.+.+++..... ...++.+|++++|++
T Consensus 1104 tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~ 1183 (1622)
T PLN03130 1104 TIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYAL 1183 (1622)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877776665543211 122789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEee
Q 000713 1183 SLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFE 1262 (1335)
Q Consensus 1183 ~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~ 1262 (1335)
+++..++++++.++++|+.++|+||+.+|.++|+|++...++..|++.||.+|.|+|+||+|+|+++.|+|||||||+|+
T Consensus 1184 ~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~ 1263 (1622)
T PLN03130 1184 NITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEIS 1263 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEc
Confidence 99999999999999999999999999999999998875545556778899999999999999999988889999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1263 GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1263 ~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||||||||||||||||+++|+|++||++|+|.|||+||+. |+++++|||||+||+||||||
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 999999999999999999999999999999999999999986 578999999999999999998
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-181 Score=1822.85 Aligned_cols=1287 Identities=28% Similarity=0.451 Sum_probs=1065.4
Q ss_pred ccCCCC--CCCccc--ccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc--cchhhHHHHHHHHH
Q 000713 13 GCSDIG--GKPCHN--AFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKSSSKSLYIPVRLQ--RFTTLQKVAAVVNG 86 (1335)
Q Consensus 13 ~c~~~~--~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 86 (1335)
.|+++. +|++.+ .+...+|| ++++++.+++.+|++++++..++...+++....+..+ ..........+|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPC---AIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCV 85 (1495)
T ss_pred hcCCccccCCCcccccccCCCCcc---HHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHH
Confidence 565433 344442 34458999 9999999999999999999888865312211112211 11123334445555
Q ss_pred HHHHHHHHHHHHHHHHhhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHH---HHHHHHHH
Q 000713 87 CLGIVYLCLATWILEEKLRK-THTALPLNWWLLVLFQGATWLLVTLIVSLRGNH--LPRAPMRLLSVLS---FLFAGIVC 160 (1335)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~---~~~~~~~~ 160 (1335)
...+++...+.+.+. .... +........++.+++..++++++..+...++.+ .+++++++||++. +++.++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 162 (1495)
T PLN03232 86 VEPVLRLVMGISLFD-MDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLV-- 162 (1495)
T ss_pred HHHHHHHHHHhhhhc-cccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHH--
Confidence 554444333333211 1111 112222232666777778887777655444443 6899999999999 777665
Q ss_pred HHHHHHHhhcccccccchhhhhhHHHHHHHHHHH-hhccccccccccccCCCccCCCC---CCcCCCCCCCCCCCCCCcc
Q 000713 161 VLSIFAAILSKDVTIKTALDVLSFPGAILLLLCA-YKVFKHEETDVKIGENGLYAPLN---GEANGLGKGDSVSQITGFA 236 (1335)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~p~~ 236 (1335)
........+... ..++..+.+.+.+.+.. +... +....+ .+.+.. .++..++..+.+.+++||+
T Consensus 163 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 230 (1495)
T PLN03232 163 -LPLKNSINRTAL----YLCISSRCCQALFGILLLVYIP-ELDPYP------GYHILNNESLDNVEYDALRGGENICPER 230 (1495)
T ss_pred -HHHHHHHhcccc----ceehhHHHHHHHHHHHHHHhcc-cCCCCC------cccccccccccccccccccccCCCCccc
Confidence 112222222100 11333333333222222 1111 111100 111000 0000011222346789999
Q ss_pred cCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 000713 237 AAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRDIFMSG 316 (1335)
Q Consensus 237 ~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~ 316 (1335)
+||+|||++|+|++|++++|||++|+.+|||+|+++|+++.++++|++.|+++.+ .++|+|+++++++|++.++.++
T Consensus 231 ~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~ 307 (1495)
T PLN03232 231 YASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPKPWLLRALNNSLGGRFWLGG 307 (1495)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987742 3468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000713 317 FFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLR 396 (1335)
Q Consensus 317 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ 396 (1335)
+++++.+++.+++|++++.+++++++++ ..+.|+.++++++++.++.+++.++|++...++++++|+.+...+|+|.++
T Consensus 308 ~~~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~ 386 (1495)
T PLN03232 308 IFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLR 386 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997654 345688899999999999999999999999999999999999999999999
Q ss_pred CChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 397 LSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHK 476 (1335)
Q Consensus 397 ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~ 476 (1335)
++....+++++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++.++++++++
T Consensus 387 l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~ 466 (1495)
T PLN03232 387 LTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRK 466 (1495)
T ss_pred CChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 000713 477 FQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACY 556 (1335)
Q Consensus 477 ~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~ 556 (1335)
.+++.|+.+|+|.+.++|+++|||+||+|+||+.|.+++++.|++|++..++..+..+...+++...|.++++++|++|.
T Consensus 467 ~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~ 546 (1495)
T PLN03232 467 LTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888888888888889999999
Q ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEEE
Q 000713 557 FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFS 636 (1335)
Q Consensus 557 l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~ 636 (1335)
+.++++|++.+|+++++++.++.|+..+|..+..+.++++|++||++||+.+|...+.. .+. ......|+++|++|+
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~-~~~~~~I~~~~vsF~ 623 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPL-QPGAPAISIKNGYFS 623 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCc-CCCCCcEEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999998765322111 111 112346999999999
Q ss_pred ecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcE-EEEcCeEEEEecCCcCCCCCHHHHhccCC
Q 000713 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT-IQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 637 ~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~-i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~ 715 (1335)
|+++.++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|. +.+++++|||+|+||++++||||||+||.
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 624 WDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred cCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCC
Confidence 98644568999999999999999999999999999999999999999974 56789999999999999999999999999
Q ss_pred CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~ 795 (1335)
++++++|++++++|++.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++++
T Consensus 704 ~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~ 783 (1495)
T PLN03232 704 DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783 (1495)
T ss_pred ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhccccccccCCCcCCCCCcc
Q 000713 796 VMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAK 875 (1335)
Q Consensus 796 ~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1335)
+.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++|+.++++.+.++.+.+....+..+..+............
T Consensus 784 l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1495)
T PLN03232 784 MKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTV 863 (1495)
T ss_pred hhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccccccc
Confidence 88777899999999999999999999999999999999999999888888887765432111100000000000000000
Q ss_pred ccc--ccccccc-cccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccccCC
Q 000713 876 EIK--KGHVEKQ-FEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANVENP 951 (1335)
Q Consensus 876 ~~~--~~~~~~~-~~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~~~~ 951 (1335)
+.+ +...... +.......+.++|++++|.+++++|+.|+++.++++.+.+++++.+..++..+++++|++ |+++..
T Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~ 943 (1495)
T PLN03232 864 TIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQST 943 (1495)
T ss_pred cccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 000 0000000 001112235678889999999999999999887766666667777788888999999999 655321
Q ss_pred --CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhh
Q 000713 952 --NVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD 1029 (1335)
Q Consensus 952 --~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~ 1029 (1335)
..+..+|+++|++++++..++.+++.+++...+.++++++|++++++++|+|++|||++|+|||+|||++|++.||..
T Consensus 944 ~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~ 1023 (1495)
T PLN03232 944 PKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRN 1023 (1495)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHH
Confidence 234568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHH
Q 000713 1030 IPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIR 1109 (1335)
Q Consensus 1030 lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIR 1109 (1335)
+|..+..++..++.++++++++++.+|+++++++|+.++++.++++|.+++|+++|++..+++|+++|++|+++|+.|||
T Consensus 1024 l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIr 1103 (1495)
T PLN03232 1024 VANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIR 1103 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHh
Confidence 99999999999999999999998888888888899998889999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----CHHHHHHHHHHHHHH
Q 000713 1110 AFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTF-----TPGFIGMALSYGLSL 1184 (1335)
Q Consensus 1110 Af~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~-----~~g~~Glalsy~l~l 1184 (1335)
||+++++|.+++.+.+|.++++.+.....++|+.+|+++++++++.+.+.+++.. .+.+ .++.+|++++|+.++
T Consensus 1104 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1104 AYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887766665555543 2221 267899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCC
Q 000713 1185 NSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1264 (1335)
Q Consensus 1185 ~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~G 1264 (1335)
++.++++++.++++|+.++|+|||.+|.++|+|++...++..|+++||.+|.|+|+||+++|+|+.++||||+||+|+||
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G 1262 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPS 1262 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCC
Confidence 99999999999999999999999999999998876543444567789999999999999999988888999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1265 HKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1265 ekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||||||||||||||+++|+|++||++|+|.|||+||+. |+++++|||||+||+||||||
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 9999999999999999999999999999999999999986 578999999999999999998
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-179 Score=1805.51 Aligned_cols=1268 Identities=29% Similarity=0.483 Sum_probs=1055.1
Q ss_pred ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccch-hhHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 000713 27 LLLSDPNSCINHALIICFDILLLAMLLFNMIQKSSSKSLYIPVRLQRFT-TLQK-VAAVVNGCLGIVYLCLATWILEEKL 104 (1335)
Q Consensus 27 ~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1335)
.+.+|| |++.+++.+|..+++++.+..++...+++.. . .+... ...+ ....+..++.+....+.+|. ..
T Consensus 21 ~d~t~~---f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~---~~ 91 (1522)
T TIGR00957 21 PDFTKC---FQNTVLAWVPCFYLWVCFPCYFLYLSRHDRG--Y-IQMTHLNKTKTALGFLLWIVCWADLFYSFWE---RS 91 (1522)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--c-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHh---cc
Confidence 456799 9999999999998888888777755332221 0 11111 1111 11122222222222233332 11
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhh
Q 000713 105 RKTHTALPLNWWLLVLFQGATWLLVTLIVSLRGNH--LPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALDVL 182 (1335)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1335)
....+ .+..+..+++..++|++++++...++++ +.|..+.+||++..++.+..+++........... . ..+...
T Consensus 92 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 167 (1522)
T TIGR00957 92 HGRAP--APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAI-V-DPFRDT 167 (1522)
T ss_pred ccccc--cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccc-c-cceehh
Confidence 11011 1344556677888887777666665554 6788999999999999998888764321111000 0 011011
Q ss_pred hHHHHHHHHHHHhhccccccccccccCCCccCCCCCCcCCCCCCCCCCCCCCcccCChhHHHHHHhHHHHHHhcccCCCC
Q 000713 183 SFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLG 262 (1335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~a~~~s~l~F~W~~pll~~g~~~~L~ 262 (1335)
.+...+.+....+...... ...|...+. ....+.+||++||++||++|||+||++++|||++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~------~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~ 231 (1522)
T TIGR00957 168 TFYIYFALVLSQLVLSCFS----------DKSPLFSET------NHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLE 231 (1522)
T ss_pred hHHHHHHHHHHHHHHHhhc----------CCCCccccc------cccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCC
Confidence 1111111111111111000 112332210 111346899999999999999999999999999999
Q ss_pred CCCCCCCChhchHHHHHHHHHHHHHHhhhc--------------------------------------CCCCCchHHHHH
Q 000713 263 DEDIPDLRKAEQAESCYFQFLDQLNKQKQA--------------------------------------EPSSQPSILRTI 304 (1335)
Q Consensus 263 ~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~--------------------------------------~~~~~~sl~~~l 304 (1335)
.+|||+++++|+++.++++|++.|+++.++ ++.++++|++++
T Consensus 232 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l 311 (1522)
T TIGR00957 232 ESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVL 311 (1522)
T ss_pred hhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHH
Confidence 999999999999999999999999876321 012357899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 305 LICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRS 384 (1335)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~ 384 (1335)
+++||+.++.+++++++.+++.+++|++++.+++|+.+++.+.+.||+++++++++.++.+++.++|+|...++|+++|+
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKT 391 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977655556799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 385 LLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITV 464 (1335)
Q Consensus 385 ~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~ 464 (1335)
+|+..||+|.|+++...++++++|+++|+|++|++|+.++..++|.+|..|+++++++++||..+|+++++|++++++++
T Consensus 392 ~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHH
Q 000713 465 LCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSP 544 (1335)
Q Consensus 465 ~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p 544 (1335)
|++..++++++++++++|+.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+...+..+.+..+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 551 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP 551 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888899
Q ss_pred HHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCC
Q 000713 545 VLVSTATFGACYFL--NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIE 622 (1335)
Q Consensus 545 ~lv~~~tF~~~~l~--~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 622 (1335)
.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|.++...+......
T Consensus 552 ~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 631 (1522)
T TIGR00957 552 FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP 631 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC
Confidence 99999999999876 4679999999999999999999999999999999999999999999987765432211111101
Q ss_pred CCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcC
Q 000713 623 NVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702 (1335)
Q Consensus 623 ~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i 702 (1335)
.....|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++|||+|+||+
T Consensus 632 ~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l 710 (1522)
T TIGR00957 632 GEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI 710 (1522)
T ss_pred CCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc
Confidence 022379999999999743 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 703 ~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
+++||+|||.||.++++++|++++++|++.+|++.+|.||+|.+|++|.+|||||||||+||||+|++||+|||||||||
T Consensus 711 ~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 711 QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH--HHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhcccc
Q 000713 783 VDAHTASSLFNDYVM--EALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSER 860 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~--~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 860 (1335)
||+++++++++.+.. +..+++|+|+|||+++.++.||+|++|++|+|++.|+++++.++.+.+.++...+........
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 870 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGH 870 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccc
Confidence 999999999999874 456789999999999999999999999999999999999999877778777654322111000
Q ss_pred cccc------CCCcC-----C---------CCCcc-----cc--cc--cc---c---ccccccccccchhhhhhhhcCCc
Q 000713 861 LAEV------TPSQK-----S---------GMPAK-----EI--KK--GH---V---EKQFEVSKGDQLIKQEERETGDI 905 (1335)
Q Consensus 861 ~~~~------~~~~~-----~---------~~~~~-----~~--~~--~~---~---~~~~~~~~~~~l~~~e~r~~G~v 905 (1335)
..+. ....+ + +...+ .. .. .+ . +..+..+...++.++|+++.|.|
T Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 950 (1522)
T TIGR00957 871 LEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQV 950 (1522)
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcc
Confidence 0000 00000 0 00000 00 00 00 0 00000111234567788899999
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccccC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 906 GLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANVEN----PNVSTLRLIVVYLLIGFVSTLFLMSRSLSS 980 (1335)
Q Consensus 906 ~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~~~----~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 980 (1335)
++++|+.|+++.|. ..+++++++.++.++..++.++|++ |.++. +..+...|+++|++++++..++.+++.+++
T Consensus 951 ~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~ 1029 (1522)
T TIGR00957 951 ELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAV 1029 (1522)
T ss_pred cHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 4444555666777888999999999 65432 122345788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 981 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLF 1060 (1335)
Q Consensus 981 ~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~ 1060 (1335)
...+.++++++|++|+++++++||+|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|++++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHH
Q 000713 1061 VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140 (1335)
Q Consensus 1061 ~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~ 1140 (1335)
+++|+++++++++++|.+++|+++|++..++||+++|++|+++|+.|||||++|++|.+++.+.+|.++++.+.....++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCC
Q 000713 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 1220 (1335)
Q Consensus 1141 Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~ 1220 (1335)
|+++++++++++++++++.+.+.. .+.+++|.+|++++|+++++..++++++.++++|+.++|+||+.+|.+.|+|++.
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1190 WLAVRLECVGNCIVLFAALFAVIS-RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 999999999888766666555543 4678999999999999999999999999999999999999999999999888764
Q ss_pred cccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCe
Q 000713 1221 VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300 (1335)
Q Consensus 1221 ~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGv 1300 (1335)
..++..||++||.+|.|+|+||+++|+++.++|||||||+|+||||||||||||||||||+++|+|++||++|+|.|||+
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 44455677789999999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred ecCC------cCCCceeecccccccccHHhhH
Q 000713 1301 LAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1301 dI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||++ |+++++|||||+||+||||||-
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NL 1380 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHc
Confidence 9986 5789999999999999999983
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-170 Score=1713.03 Aligned_cols=1084 Identities=24% Similarity=0.432 Sum_probs=952.4
Q ss_pred CCCcccCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHH
Q 000713 232 ITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRD 311 (1335)
Q Consensus 232 ~~p~~~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~~~ 311 (1335)
.+||++||++||++|||+||++++|||++|+.+|||+|+++++++.++++|++.|+++..+ +.++++|+++++++|++.
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~~~l~~~~~~~ 81 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS-AKKNPKLLNALRRCFFWR 81 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999876432 245689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 312 IFMSGFFALIKVLTLSAGPLFLNAFILVAESKAG-FKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAI 390 (1335)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~I 390 (1335)
+++.++++++.+++.+++|++++.+++|++.++. ..+.||.++++++++.++++++.++++|...++|+++|++|+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 82 FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999964332 245799999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 391 YRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPL 470 (1335)
Q Consensus 391 y~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~ 470 (1335)
|+|.|+++....++.++|+++|+|++|++|+.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.++
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 000713 471 AKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTA 550 (1335)
Q Consensus 471 ~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~ 550 (1335)
++++.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.++++++|++|++.+++..+..++..++++..|.+++++
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEE
Q 000713 551 TFGACYFLNVPLYASNVFTFVATLRLVQDPIR-IIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAIS 629 (1335)
Q Consensus 551 tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~-~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~ 629 (1335)
+|++|.+.++ ++++++||++++|++|+.|+. .+|..+..+.++.+|++||++||..+|.++... .. ....++
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~~----~~~~i~ 394 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--NL----TTTEVE 394 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--cC----CCCceE
Confidence 9999988754 789999999999999999985 799999999999999999999998877543211 11 223599
Q ss_pred EEeeEEEecCC-------------------------------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000713 630 IKSASFSWEES-------------------------------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1335)
Q Consensus 630 i~~~~~~~~~~-------------------------------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG 678 (1335)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999531 01368999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 679 EVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 679 ~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
+++|++|+|.++|+++||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|.||+|++|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|||+||||+|++|++|||||||||||+++++++++.++....+++|+|+|||+++.++.||+|++|++|+|++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888777789999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHhh---h----h-------------hc--------ccc--------ccccCCC---------------
Q 000713 839 LASSKEFQELVSAHK---E----T-------------AG--------SER--------LAEVTPS--------------- 867 (1335)
Q Consensus 839 ~~~~~~~~~l~~~~~---~----~-------------~~--------~~~--------~~~~~~~--------------- 867 (1335)
.+....+.+.+.... + . .. .+. ..+....
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 876665655542100 0 0 00 000 0000000
Q ss_pred --------------c-CC---CCC-------cc--------c-cc---------------------c-------c-----
Q 000713 868 --------------Q-KS---GMP-------AK--------E-IK---------------------K-------G----- 880 (1335)
Q Consensus 868 --------------~-~~---~~~-------~~--------~-~~---------------------~-------~----- 880 (1335)
. +. +.. .. + .+ . .
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 00 000 00 0 00 0 0
Q ss_pred cc-------------cc--------cc-----------ccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHH
Q 000713 881 HV-------------EK--------QF-----------EVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASL 928 (1335)
Q Consensus 881 ~~-------------~~--------~~-----------~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~ 928 (1335)
.. ++ .+ +....+++.++|+++.|.++|++|+.|+++.|++.++.++++
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 00 00 00 000011245668888999999999999998876666656666
Q ss_pred HHHHHHHHHHHHhHhhh-ccccC--------C-C-----------c-chhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 929 SHLTFVIGQILQNSWLA-ANVEN--------P-N-----------V-STLRL-IVVYLLIGFVSTLFLMSRSLSSVVLGI 985 (1335)
Q Consensus 929 ~~~~~~~~~~~~~~wl~-w~~~~--------~-~-----------~-~~~~~-~~vy~~l~~~~~~~~~~~~~~~~~~~~ 985 (1335)
+.++.+++..+.++|++ |+.+. + . . ...+| +++|++++++..++.+++.+++...+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999998 65311 0 0 0 11233 566666666677888889999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 986 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPV 1065 (1335)
Q Consensus 986 ~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl 1065 (1335)
++++++|++++++++++|++|||++|+|||+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 000713 1066 IFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQR 1145 (1335)
Q Consensus 1066 ~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~r 1145 (1335)
++++++++++|.+++|+++|++..+++|+++||+|+++|+.|||||+++++|.+++.+++|.++++++.....++|+..|
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCccc--
Q 000713 1146 LETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVE-- 1223 (1335)
Q Consensus 1146 l~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~-- 1223 (1335)
+++++++++..++++++.. ..+++|.+|++++|++++...++++++.++++|+.|+|+|||.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~~--~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIGT--NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 9998877665544444432 235788999999999999999999999999999999999999999999887643211
Q ss_pred ------------CCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCC
Q 000713 1224 ------------DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPA 1291 (1335)
Q Consensus 1224 ------------~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~ 1291 (1335)
...+|+.||..|.|+|+||+++|+++.|+||+||||+|+||||||||||||||||||+++|+|+++ .
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 123566899999999999999999888899999999999999999999999999999999999998 7
Q ss_pred CCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1292 RGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1292 ~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+|+|.|||+||+. |+++++|||||+||+||||||.
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NL 1312 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHh
Confidence 9999999999985 5789999999999999999983
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-160 Score=1616.27 Aligned_cols=1096 Identities=29% Similarity=0.447 Sum_probs=948.4
Q ss_pred CCCCCcccCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhc-----------------
Q 000713 230 SQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQA----------------- 292 (1335)
Q Consensus 230 ~~~~p~~~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~----------------- 292 (1335)
..+.||++||||.++++.|++|++.+..|..|+++|+|+...+.|+-++..++.+..++...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 345799999999999999999999999999999999999999999977776665544332110
Q ss_pred --------------------------------------------------------------------------------
Q 000713 293 -------------------------------------------------------------------------------- 292 (1335)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (1335)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 000713 293 ----------EPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKI 362 (1335)
Q Consensus 293 ----------~~~~~~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~ 362 (1335)
.+++..+|+++++++||+.++..++++++.+++.+++|++++.+++|+++++.....|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 0123458999999999999999999999999999999999999999997665444468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 363 LESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARL--MHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCI 440 (1335)
Q Consensus 363 ~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~--~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~l 440 (1335)
+++++.++|+|...+.|+++|++|.+.||+|+++++..+.+ +.++|+++|+|++|++++.+++.++|.+|.+|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHH
Q 000713 441 ALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRN 520 (1335)
Q Consensus 441 al~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~ 520 (1335)
++++||..+||++++|++++++++|++.++++++.++++++|+++|+|++.++|+++|||+||+||||+.|.++|++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 521 VEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600 (1335)
Q Consensus 521 ~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~R 600 (1335)
+|++.+++..+..++..++++++|.++.+++|++|++.|++||++++||++++|++++.|+.++|..++.+.++.+|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccc----c------------------c-----------cC------------------------CCCC
Q 000713 601 IVNFLEAPELQSMNI----R------------------Q-----------KG------------------------NIEN 623 (1335)
Q Consensus 601 I~~fL~~~e~~~~~~----~------------------~-----------~~------------------------~~~~ 623 (1335)
|++||+.+|.+.... + + .+ ....
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998766311000 0 0 00 0000
Q ss_pred CcccEEEEeeEEEecCC-------------------------------------CCCCceeeeeeEeeCCcEEEEEcCCC
Q 000713 624 VNRAISIKSASFSWEES-------------------------------------SSKPTMRNISLEVRPGQKVAICGEVG 666 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~-------------------------------------~~~~~L~~isl~i~~G~~v~IvG~~G 666 (1335)
....+.++|++++|+.. +++++|+|+||+|++|++++|+||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11246677777664310 12458999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccc
Q 000713 667 SGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746 (1335)
Q Consensus 667 sGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~i 746 (1335)
|||||||++|+|+++|++|+|.+++++||+||+||++++|++|||.|+.+++.++|++++++|++.+|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 747 g~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+..+|+|+|++||+++.++.+|+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999887666679999999999999999999999999
Q ss_pred CeEEEecChHHHHhcchHHHHHHHHhhhhhcc-c-ccc-ccCCCcC-CC---CCcc--ccccccccc---ccccccccch
Q 000713 827 GEILRAAPYHQLLASSKEFQELVSAHKETAGS-E-RLA-EVTPSQK-SG---MPAK--EIKKGHVEK---QFEVSKGDQL 894 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~-~-~~~-~~~~~~~-~~---~~~~--~~~~~~~~~---~~~~~~~~~l 894 (1335)
|++.+.|+++++.+.. .+.++........+. . +.. +...... .+ .... ..+....+. ........++
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 9999999999998653 455554332111100 0 000 0000000 00 0000 000000000 0001122356
Q ss_pred hhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccccCCCcchhHHHHHHHHHHHHHHHHH
Q 000713 895 IKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANVENPNVSTLRLIVVYLLIGFVSTLFL 973 (1335)
Q Consensus 895 ~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~~~~~~~~~~~~~vy~~l~~~~~~~~ 973 (1335)
.++|+++.|.|+|++|+.|+++.|+...+.++++++++.++...++++|++ |+.+....+...|+++|++++++..++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 677888899999999999999887766665666666777888899999999 7654333445678999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 974 MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAV 1053 (1335)
Q Consensus 974 ~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~ 1053 (1335)
+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHH
Q 000713 1054 VTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFF 1133 (1335)
Q Consensus 1054 ~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~ 1133 (1335)
..|+++++++|+++++++++++|.+.+|+++|+++.++||+++|++|+++|+.|||+|+.+++|.+++.+.+|.+.++.+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99998888899998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000713 1134 HSFAANEWLIQRLETLSATVISSAAFCMVL---LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQ 1210 (1335)
Q Consensus 1134 ~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~---~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~ 1210 (1335)
.....++|+++++++++++++++++++.+. ...+.+++|.+|++++|+.+++..++++++.+.++|+.|+|+|||.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988766554444332 22345789999999999999999999999999999999999999999
Q ss_pred hhc-CCCCCCCc-----------------------ccCCCCC---CCCCccceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000713 1211 YMH-VPSEAPEV-----------------------VEDNRPP---PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEG 1263 (1335)
Q Consensus 1211 y~~-~~~E~~~~-----------------------~~~~~p~---~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~ 1263 (1335)
|.+ .|+|+... .+...|+ +.||..|.|+|+||+|+|+++.|+|||||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 996 45443110 0011122 24667899999999999999888899999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1264 GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|||||||||||||||||+++|+|++||++|+|.|||+||+. |+++++|||||+||+||||||.
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999985 5789999999999999999983
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-106 Score=1010.62 Aligned_cols=993 Identities=19% Similarity=0.259 Sum_probs=727.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--Cc----hhHHH---HHHHHHHHHHHHHHHHH
Q 000713 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKA--GF----KYEGY---LLAITLFLAKILESLSQ 368 (1335)
Q Consensus 298 ~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~----~~~g~---~l~~~l~~~~~~~~l~~ 368 (1335)
..+++.--+.-+.-+.++.+.++++.+...+.-++...+++.+-... .. ...++ +++++++++.+++ .
T Consensus 16 ~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q---~ 92 (1228)
T KOG0055|consen 16 FKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ---V 92 (1228)
T ss_pred HHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 34444333334444455556666666555555556677777664432 10 11122 2233333444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 000713 369 RQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-----WFHQIWTTSVQLCIALI 443 (1335)
Q Consensus 369 ~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-----~~h~~w~~plqi~lal~ 443 (1335)
..|.+.+.|...|+|.....++.||...+.+. +++|++++-|+.|++++.|.+. ++|.+-....-++++++
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999988766543 4559999999999999998763 45544443334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHH
Q 000713 444 ILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEY 523 (1335)
Q Consensus 444 lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El 523 (1335)
.-|+ .+++++.+.+++......+++.+.+...+..++..+.-+++.|.+.+||+|-.|+-|+...++..+. +
T Consensus 169 ~~W~----Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~----L 240 (1228)
T KOG0055|consen 169 YGWK----LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKA----L 240 (1228)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHH----H
Confidence 3322 5677777788888888999999999999999999999999999999999999999999988888763 3
Q ss_pred HHHHHHHHHHHHHhHHHhHHH------HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 524 KWLSAVQLRKAYNGFLFWSSP------VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVA 597 (1335)
Q Consensus 524 ~~l~~~~~~~a~~~~~~~~~p------~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS 597 (1335)
+..+|+....++...+..... .....++||..++..+..+++++|+++...-+-...|.+..+.++.+.+|++|
T Consensus 241 ~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~a 320 (1228)
T KOG0055|consen 241 ENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAA 320 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccc
Confidence 333333333333322222222 23444566666666678999999999855555556778888899999999999
Q ss_pred HHHHHHHhcC-CCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHH
Q 000713 598 FSRIVNFLEA-PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676 (1335)
Q Consensus 598 ~~RI~~fL~~-~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~i 676 (1335)
..+|.+-++. |+.+......... ...++.|+++|++|+||.+++.++|+|+||+|++|+.+|+||||||||||++++|
T Consensus 321 a~~I~~~i~~~~~i~~~~~~~~~~-~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL 399 (1228)
T KOG0055|consen 321 AYRIFETIDRKPSIDPYSKGGRVL-SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLL 399 (1228)
T ss_pred hHHHHHHhcCCCCCCcccccCCcc-cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999975 4444432111111 1256789999999999998888999999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCC
Q 000713 677 LGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGD 742 (1335)
Q Consensus 677 lG~~~~~~G~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd 742 (1335)
.|+++|++|+|.++| ++|.|+|+|.+|++||+|||.||+|- ..++.+++.+.....+.+..+|+|+
T Consensus 400 ~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~ 479 (1228)
T KOG0055|consen 400 ARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGY 479 (1228)
T ss_pred HHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhh
Confidence 999999999999998 47999999999999999999999864 5666777777777888999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 743 NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 743 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
+|.+||+|.+|||||||||||||||.+||+||||||||||||++..+ +.+..++...+|+|.|+|+|+++.++++|+|+
T Consensus 480 ~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~-~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~ 558 (1228)
T KOG0055|consen 480 DTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER-VVQEALDKASKGRTTIVVAHRLSTIRNADKIA 558 (1228)
T ss_pred cccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH-HHHHHHHHhhcCCeEEEEeeehhhhhccCEEE
Confidence 99999999999999999999999999999999999999999999865 55677888889999999999999999999999
Q ss_pred EEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhcccccccc---CCCcCCC--C--Ccccccc--c--ccc-ccccccc
Q 000713 823 LMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEV---TPSQKSG--M--PAKEIKK--G--HVE-KQFEVSK 890 (1335)
Q Consensus 823 vl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~--~--~~~~~~~--~--~~~-~~~~~~~ 890 (1335)
+|++|+|+|.|+++||++.++.|.++++.+......++.++. ....... . ....... . ... ...+.++
T Consensus 559 v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~ 638 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGED 638 (1228)
T ss_pred EEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccc
Confidence 999999999999999999989999999877544322210000 0000000 0 0000000 0 000 0000000
Q ss_pred ccchhhhhhhhcCCcchHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhHhhh-----ccccCC---CcchhHHHHH
Q 000713 891 GDQLIKQEERETGDIGLKPYIQYLNQNK-GFLFFSIASLSHLTFVIGQILQNSWLA-----ANVENP---NVSTLRLIVV 961 (1335)
Q Consensus 891 ~~~l~~~e~r~~G~v~~~~y~~Y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wl~-----w~~~~~---~~~~~~~~~v 961 (1335)
......+|+ -.++ +++-++.+. .|.++.+.+++.++..+......+-++ ....++ ......|..+
T Consensus 639 ~~~~~~~~~---~~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~ 712 (1228)
T KOG0055|consen 639 PEEPVSEED---EKVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALI 712 (1228)
T ss_pred ccccccccc---cccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 000001111 1223 333333332 233333333333333322222222222 111111 1123459999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cCchhhHHHHhcChhHHHhhhHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRILSRVSSDLSIVDLDIPFSLIFAVG 1039 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~--tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~ 1039 (1335)
|+++|+++.++.++..+++.+.|.+.+++++.+++++++|.++.|||. |. |+|.+|+++|...|...+...+..+++
T Consensus 713 f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~ 791 (1228)
T KOG0055|consen 713 FLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQ 791 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 66 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh-HHHHHHHHccccchHHHHHHHHHcchHHHHhcccHH
Q 000713 1040 ATTNACSNLGVLAVVTWQVLFV---SIPVIFLAIRLQRYYFVT-AKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 1115 (1335)
Q Consensus 1040 ~~~~~~~~l~vi~~~~~~~~~~---~ipl~~~~~~~q~~y~~t-srel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~ 1115 (1335)
++..++..+++.++.+|.+.++ +.|++++..+.+.+++.. +++.+.. ....-....|++++++||+||+.|+
T Consensus 792 ~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~----~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 792 NIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKA----YEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 9999999999999999999765 568888887887777754 4444431 1223356899999999999999999
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 000713 1116 RFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC----MVLLPPGTFTPGFIGMALSYGLSLNSSLVMS 1191 (1335)
Q Consensus 1116 ~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~----~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~ 1191 (1335)
+|++.+.+.++...+..+.. ..|-++-..+-.+++.+.-++. ..+..++.+++..+=..+.-..--...+...
T Consensus 868 ~~~~~y~~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~ 944 (1228)
T KOG0055|consen 868 KFMELYKEELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQA 944 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776543 2344444444444433333322 2333456666665433332222222344556
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCC-CccceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEE
Q 000713 1192 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNW-PVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIG 1268 (1335)
Q Consensus 1192 v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~W-P~~G~I~f~nv~~rY--~~~~~~VLk~is~~I~~GekVG 1268 (1335)
.....+.-....|+.+|++..+-+++-+...++. ..+ +.+|+|+|+||+|+| ||+. +||+|+|++|++||+||
T Consensus 945 ~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~---~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvA 1020 (1228)
T KOG0055|consen 945 SSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG---GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVA 1020 (1228)
T ss_pred HhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC---CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEE
Confidence 6667788889999999999998655322111111 112 368999999999999 5666 49999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1269 IVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+||++||||||++++|.|+|||++|.|.|||.||.. |+++++|+|||+||++|||||
T Consensus 1021 LVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrEN 1083 (1228)
T KOG0055|consen 1021 LVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIREN 1083 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHH
Confidence 999999999999999999999999999999999986 678999999999999999998
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-98 Score=1010.14 Aligned_cols=1021 Identities=16% Similarity=0.168 Sum_probs=714.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 299 sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
.+++...+.+++.++++.++.++..++..+.|++++.+++.+...+. . ..+++.+++..++..++...+.+...++
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN-V---NDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556678888899999999999999999999999997642211 1 1122223333333444444445566777
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAAL 457 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl 457 (1335)
+.++-..+...+|+|.++++..-.+....|++.|.++.|++.+.+.+. .+..+...++.++.++++++..--.-+++.+
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888888888889999999998777778889999999999999988653 4455555556666665555443222444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000713 458 VVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNG 537 (1335)
Q Consensus 458 ~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~ 537 (1335)
+++++++.+..++.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+.-.+...+.....++..
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777888888888888888889999999999999999999999999998887654443333333333333322
Q ss_pred HHHhHH--HHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 538 FLFWSS--PVLVSTATFGACYFLNV--------PLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 538 ~~~~~~--p~lv~~~tF~~~~l~~~--------~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
.+.... -..+.+++||.+.+..+ .++++.+++.+...-+...++..+...+..+.++.+|.+||.+.++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 221111 12234456777766543 57888888766444444455556666788999999999999999986
Q ss_pred CCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEE
Q 000713 608 PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1335)
Q Consensus 608 ~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i 687 (1335)
++..+........ . ....|+++|++|+|+++++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 365 ~~~~~~~~~~~~~-~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 442 (1466)
T PTZ00265 365 KPLVENNDDGKKL-K-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 (1466)
T ss_pred CCCCCCCCCCccC-C-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence 4322111110100 1 1236999999999986444579999999999999999999999999999999999999999999
Q ss_pred EEc-C-------------eEEEEecCCcCCCCCHHHHhccCCC-------------------------------------
Q 000713 688 QVY-G-------------KTAYVSQTAWIQTGSIRENILFGSP------------------------------------- 716 (1335)
Q Consensus 688 ~v~-g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~------------------------------------- 716 (1335)
.++ | ++|||+|+|.+|++||+|||.+|..
T Consensus 443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1466)
T PTZ00265 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDL 522 (1466)
T ss_pred EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchh
Confidence 995 3 2799999999999999999998742
Q ss_pred ---------------------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 717 ---------------------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 717 ---------------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
.++++..++++.+++.+.+..+|.|.+|.+|++|.+|||||||||+||||++++|+|+|
T Consensus 523 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILl 602 (1466)
T PTZ00265 523 NDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILI 602 (1466)
T ss_pred hhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12244566777788889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCC---------------------------
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDG--------------------------- 827 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G--------------------------- 827 (1335)
||||||+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 603 LDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1466)
T PTZ00265 603 LDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNN 682 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccc
Confidence 9999999999999988876655443 589999999999999899999999986
Q ss_pred --------------------eEEEecChHHHHh-cchHHHHHHHHhhhhhcccc-c--c-cc--CCCc-C-CC--CCccc
Q 000713 828 --------------------EILRAAPYHQLLA-SSKEFQELVSAHKETAGSER-L--A-EV--TPSQ-K-SG--MPAKE 876 (1335)
Q Consensus 828 --------------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~-~--~-~~--~~~~-~-~~--~~~~~ 876 (1335)
+|+|+|+++||++ .++.|..+++.+........ . . +. .... . .. ....+
T Consensus 683 ~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1466)
T PTZ00265 683 KDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDE 762 (1466)
T ss_pred cccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57888888865432211100 0 0 00 0000 0 00 00000
Q ss_pred ccc----ccc--c-cc-ccc--ccccchhhh------hhh--hcCCc--chHHHHHHHHhhhhhHHHHHH--HHHHHHHH
Q 000713 877 IKK----GHV--E-KQ-FEV--SKGDQLIKQ------EER--ETGDI--GLKPYIQYLNQNKGFLFFSIA--SLSHLTFV 934 (1335)
Q Consensus 877 ~~~----~~~--~-~~-~~~--~~~~~l~~~------e~r--~~G~v--~~~~y~~Y~~~~~g~~~~~~~--~~~~~~~~ 934 (1335)
... ... . .. ... ....+..++ +++ ..... .+..++++++.......+.++ ++...+..
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1466)
T PTZ00265 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYP 842 (1466)
T ss_pred ccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0 00 000 000000000 000 00001 122334444332222221111 11111222
Q ss_pred HHHHHHhHhhh--ccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--c
Q 000713 935 IGQILQNSWLA--ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--T 1010 (1335)
Q Consensus 935 ~~~~~~~~wl~--w~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~--t 1010 (1335)
+.......++. +..+........|.+++++++++..++.+++.++....+.+...+++.++++++++.|++|||. +
T Consensus 843 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~ 922 (1466)
T PTZ00265 843 VFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH 922 (1466)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC
Confidence 22222222222 1111111123456777888888899999999999999999999999999999999999999996 8
Q ss_pred CchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH--
Q 000713 1011 PLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFV--TAKELMRL-- 1086 (1335)
Q Consensus 1011 p~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~--tsrel~Rl-- 1086 (1335)
++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|+.++.........+ ..++.++.
T Consensus 923 ~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1466)
T PTZ00265 923 APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEI 1002 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999887776655443322211111 12222222
Q ss_pred -----------HccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1087 -----------NGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVIS 1155 (1335)
Q Consensus 1087 -----------~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~ 1155 (1335)
+....+...++++|+++|+.|||+|+.|++|.+++.+..+...+..........++..-.+.+..+..+
T Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1466)
T PTZ00265 1003 NQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINS 1082 (1466)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122244567899999999999999999999999999999887766554433332222222333222221
Q ss_pred -HHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCC-CCCCCc
Q 000713 1156 -SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRP-PPNWPV 1233 (1335)
Q Consensus 1156 -~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p-~~~WP~ 1233 (1335)
+..+...+...|.++.|.+-.++.+.+.....+..+...+.++++...|.||+.+.++.++|.+...+...+ ++..+.
T Consensus 1083 ~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~ 1162 (1466)
T PTZ00265 1083 FAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDI 1162 (1466)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCC
Confidence 112222333367788887666655544444456667788899999999999999999876543211111111 011235
Q ss_pred cceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCC----------------------
Q 000713 1234 VGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP---------------------- 1290 (1335)
Q Consensus 1234 ~G~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~---------------------- 1290 (1335)
.|.|+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|.|+|+|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 6899999999999632 23699999999999999999999999999999999999999
Q ss_pred --------------------------------CCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1291 --------------------------------ARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1291 --------------------------------~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
++|+|+|||+||+. |+.+++|+|||+||+||||||
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreN 1315 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYEN 1315 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHH
Confidence 69999999999975 578999999999999999998
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-70 Score=687.92 Aligned_cols=548 Identities=23% Similarity=0.271 Sum_probs=434.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 299 sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
+.++...+.+++.++++.++.++..++..+.|++++.+++.+..++......+.+++++++..++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888999999999999999999999999999997642211122223344455556666777766667777889
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAAL 457 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl 457 (1335)
+.++...+...+|+|.++++.....+.++|+++|.+++|++++.++.. .+..++...+.+++++++++..-.+.+++.+
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 170 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILL 170 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888889999999999999999998764 5666666655555555444332222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000713 458 VVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 458 ~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I----~~~R~~El~~l~~~~~~~ 533 (1335)
+++++.+.+...+.++.++.+++.++..+++.+.+.|.++|+++||.|+||+.+.+++ ++.|+.+.+..+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 171 GTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556677888889999999999999999999999999999999999887776 456666665555544444
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000713 534 AYNGFLFWSSPVLVSTATFGACYFLNV--------PLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL 605 (1335)
Q Consensus 534 a~~~~~~~~~p~lv~~~tF~~~~l~~~--------~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL 605 (1335)
.+..++... +.+ .++.++.+.+.|. .+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~~-~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SIA-LVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332222 221 2223333333331 233445566666677788999999999999999999999999999
Q ss_pred cCCCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 606 EAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 606 ~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
+.++.++........ ......|+++|++|.|++ ++++|+|+||++++|+++||+||||||||||+++|+|++ |++|
T Consensus 329 ~~~~~~~~~~~~~~~-~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 329 ETPLAHPQQGEKELA-SNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred cCCCcccCCCccccC-CCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 876532211110000 002235999999987754 257999999999999999999999999999999999999 8999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
+|.++| +++||||+|++|++||+|||.+|++ .++++++++++.|++.++++.+|+|++|.+||+|.
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA 484 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC
Confidence 999998 4899999999999999999999965 78899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~ 831 (1335)
+||||||||++||||+++||+|+||||||||||+++++++.+.+ ....+++|+|+|||+++.++.+|+|++|++|+|++
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l-~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999998754 45567999999999999999999999999999999
Q ss_pred ecChHHHHhcchHHHHHHHHhh
Q 000713 832 AAPYHQLLASSKEFQELVSAHK 853 (1335)
Q Consensus 832 ~g~~~~l~~~~~~~~~l~~~~~ 853 (1335)
.|+++|++++++.|.+++..+.
T Consensus 564 ~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 564 QGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred cCCHHHHHhcchHHHHHHHHhh
Confidence 9999999998888888876543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=634.55 Aligned_cols=544 Identities=22% Similarity=0.290 Sum_probs=436.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 302 RTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAES-KAGF---KYEGYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~---~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 377 (1335)
+.+.+..|+.+..+.++.++..+....-|.++.++++.+.. .+.. ......++++ .++.+++..-..+..+.
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l----~~~~a~~~~~r~~~~~~ 214 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGL----FLIGALANAIRGGLLQY 214 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999999999999998876 2211 1122233333 33344444334444444
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
.+.|+-..+...+|++.++..-+-.+++.+||+++.++.|++-+.+.+ .++.+.--..+|...++.++...=---+++.
T Consensus 215 a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~ 294 (716)
T KOG0058|consen 215 AGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVT 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 455555555556667777766666777889999999999999998865 5777777777888777766643211134455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++++.+..++++..+++.++..++..+-.+...|.|++||+||.|+-|+.-.++..+.=+.-++.-+|-....++.
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f 374 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF 374 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 56666777788888999999999999999999999999999999999999998766666543222222223333322222
Q ss_pred hHH--HhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcc
Q 000713 537 GFL--FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA-PELQSM 613 (1335)
Q Consensus 537 ~~~--~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~-~e~~~~ 613 (1335)
... +...-..++++.+|.+...++.+|++...+.+..-..+..++..+....+.++++..|..|+.++++. |.++.+
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~ 454 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT 454 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC
Confidence 111 11122457778888898889999999999999888889999999999999999999999999999986 444433
Q ss_pred cccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--
Q 000713 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-- 691 (1335)
Q Consensus 614 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-- 691 (1335)
.. ..|. ...+.|+++|++|+||.+++.++|+|+||+|+|||.||+||||||||||+.++|+.+++|++|+|.+||
T Consensus 455 G~-~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~ 531 (716)
T KOG0058|consen 455 GT-LAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP 531 (716)
T ss_pred Cc-cccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence 21 1221 155789999999999999889999999999999999999999999999999999999999999999999
Q ss_pred -----------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 -----------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 -----------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+||+|.|+|.+|++||+|||.+|.+ .++++.+++.+.+.-++.+..+|+|.+|.+||+|.+|||||||
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 3799999999999999999999986 4566777888888899999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
||||||||++||.|+||||.|||||++.. ++.++.+....+++|||++.|+++.+++||+|+++++|+++|.|+++|++
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE-~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESE-YLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhH-HHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHh
Confidence 99999999999999999999999999985 56677777778889999999999999999999999999999999999999
Q ss_pred hcc-hHHHHHHHHhh
Q 000713 840 ASS-KEFQELVSAHK 853 (1335)
Q Consensus 840 ~~~-~~~~~l~~~~~ 853 (1335)
+.. +.+.++++.+.
T Consensus 691 ~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 691 SKPNGLYAKLVQRQL 705 (716)
T ss_pred hCcccHHHHHHHHhc
Confidence 877 67888876543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=663.40 Aligned_cols=542 Identities=21% Similarity=0.249 Sum_probs=443.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 299 sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
.+++..++.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566567788889999999999999999999999999997753322 22233445555556666666666666778889
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~--~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
+.++...+...+|+|.++++.....+.++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988778889999999997 89999886542 233333343 3344455555445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++.+++...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667778888899999999999999999999999999999999999999888877765554444443333333332
Q ss_pred hHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000713 537 GFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1335)
Q Consensus 537 ~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~ 614 (1335)
..+......+ +.++.+++|...++.+|.+.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 2222222222 33455677777788999999999999999999999999999999999999999999999865422211
Q ss_pred ccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---
Q 000713 615 IRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--- 691 (1335)
Q Consensus 615 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--- 691 (1335)
. ..+ ....+.|+++|++|+|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 ~-~~~--~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 517 (686)
T TIGR03797 442 K-TDP--GKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL 517 (686)
T ss_pred c-CCC--CCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 1 111 1123469999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 ----------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+++||||+|++|++|++|||.++.+.++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||+
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 3799999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+||||++++|++++||||||+||+++++++.+.+.+. ++|+|+|||+++.++.+|+|++|++|+|++.|+++|++++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998876542 6899999999999999999999999999999999999988
Q ss_pred chHHHHHHH
Q 000713 842 SKEFQELVS 850 (1335)
Q Consensus 842 ~~~~~~l~~ 850 (1335)
++.|.++++
T Consensus 675 ~~~y~~l~~ 683 (686)
T TIGR03797 675 EGLFAQLAR 683 (686)
T ss_pred CcHHHHHHH
Confidence 888888765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=667.85 Aligned_cols=544 Identities=19% Similarity=0.263 Sum_probs=450.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIG 379 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 379 (1335)
.++..++.+++.++...+..++..++..+.|++++.+++.+-.... ....+.++++++++.++..++.....+...+++
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777788888889999999999999999999997654332 222334455555566666676666677788899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 380 LKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 380 ~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
.++...+...+|+|.++++.....+.++|+++|.++.| +++.++.. .+..+....+.+++.+++++..-++.+++.++
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 301 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIA 301 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887888999999999988 67887653 34444455555556666665554555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~ 538 (1335)
.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+.....+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (710)
T TIGR03796 302 FAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGV 381 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777888888899999999999999999999999999999999999999999998888777766655554444333
Q ss_pred HHhHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-
Q 000713 539 LFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI- 615 (1335)
Q Consensus 539 ~~~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~- 615 (1335)
+...... .+.++.++++.+.++.+|.+.+++++.++..+..|+..++..+..+.+++++++||.++++.++..+...
T Consensus 382 ~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 461 (710)
T TIGR03796 382 LPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEE 461 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 2345667788788889999999999999999999999999999999999999999999998754322111
Q ss_pred ---cccCCC-CCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC
Q 000713 616 ---RQKGNI-ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691 (1335)
Q Consensus 616 ---~~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g 691 (1335)
...... ...++.|+++|++|+|++. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 462 ~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 540 (710)
T TIGR03796 462 EAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG 540 (710)
T ss_pred cccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 000000 1124579999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -------------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -------------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
+++||||+|+++++|++|||.++.+ .++++..++++.+++.+++..+|.|.+|.+||+|.+|||||
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 4799999999999999999998764 67888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|||++||||++++|+|+|||||||+||+++++++++.+.+ .++|+|+|||+++.++.||+|++|++|+|++.|+++|
T Consensus 621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999987754 5899999999999999999999999999999999999
Q ss_pred HHhcchHHHHHH
Q 000713 838 LLASSKEFQELV 849 (1335)
Q Consensus 838 l~~~~~~~~~l~ 849 (1335)
++++++.|.+++
T Consensus 698 Ll~~~~~y~~l~ 709 (710)
T TIGR03796 698 LWAVGGAYARLI 709 (710)
T ss_pred HHHcCCcHHHHh
Confidence 998887777664
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-66 Score=660.11 Aligned_cols=539 Identities=21% Similarity=0.266 Sum_probs=420.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
+++.+++.+....++.++..++..+.|++++.+++.+..+..... -...+..+++..++..++.....+...+.+.++.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (711)
T TIGR00958 155 LSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA-LASAIFFMCLLSIASSVSAGLRGGSFNYTMARIN 233 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888889999999999999999999998864332111 0011111112222222222222222333455555
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++.+....++..+|+++|.++.|++++.+.. ..+..+....+++++++++++..-...+++.++.+++
T Consensus 234 ~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 234 LRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556677888999988877778899999999999999998765 4566666666777777666655433344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
.+.+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.+++++..++-.+..++.....+....+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888999999999999999999999999999999877776654443332222222222221111111
Q ss_pred --HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCC
Q 000713 543 --SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN 620 (1335)
Q Consensus 543 --~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~ 620 (1335)
.-..+.++.++.+.+.++.+|++.+.+.+.+...+..|+..++..+..+.+++++.+||.++++.++..+......+
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~- 472 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC-
Confidence 11223445667777778899999999999999999999999999999999999999999999987543221111111
Q ss_pred CCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------
Q 000713 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------- 691 (1335)
Q Consensus 621 ~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------- 691 (1335)
.+..+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 473 -~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 473 -LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred -CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1133569999999999865456899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
+++||||+|++|++|+||||.+|.+ .++++..++++.+++.++++.+|+|.+|.+||+|.+||||||||++||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999999965 56778899999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
++++|+|+|||||||+||+++.+.+.+ ....+++|+|+|||+++.+..+|+|++|++|+|++.|+++|++++++.|.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999988877 22347899999999999999999999999999999999999998776665
Q ss_pred HH
Q 000713 847 EL 848 (1335)
Q Consensus 847 ~l 848 (1335)
++
T Consensus 709 ~l 710 (711)
T TIGR00958 709 HL 710 (711)
T ss_pred hc
Confidence 54
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=639.44 Aligned_cols=545 Identities=28% Similarity=0.371 Sum_probs=460.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 297 QPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSR 376 (1335)
Q Consensus 297 ~~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 376 (1335)
+.+.++..++-+++.+.-..+..++..++..+.|++.+.++|.+-.... ...-..+++++.+..+++.+...--.|...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778889988889999999999999999999999998864432 233456666777777788777666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000713 377 LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLC---IALIILFHAVGLAT 453 (1335)
Q Consensus 377 r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~---lal~lL~~~lG~a~ 453 (1335)
.++.|+...+...+|++.|+++....+++++|++++.+ .|.++|.++...- +.+.++.+. +.+.+++..-+.-+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~--~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGS--ILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999997 6899999886431 223333333 33344455556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
+++++.+++.+.+..++.+..++..++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.+.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 77888888888888999999999999999999999999999999999999999999999888876666666555555544
Q ss_pred HHHhHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000713 534 AYNGFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQ 611 (1335)
Q Consensus 534 a~~~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~ 611 (1335)
.....+......+ +.+++||++..+++.+|.|..+.+..+......|+..+.+....+.+++++.+|+.+.++.|..+
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4443332222222 55678999999999999999999999999999999999999999999999999999999876532
Q ss_pred cccc--cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000713 612 SMNI--RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 612 ~~~~--~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v 689 (1335)
+... ...+ ..++.|+++|++|+|+.++ .++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+
T Consensus 457 ~~~~~~~~~~---~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 457 EGDKTLIHLP---KLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccccccc---ccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 2211 1122 1457899999999998754 37999999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEecCCcCCCCCHHHHhccCCCCCh-HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 690 YG-------------KTAYVSQTAWIQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 690 ~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~-~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
|| +++||+|++.+|++||+|||.++.|... ++..++++..+.++++..+|.|.+|.+||+|.+|||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 99 4799999999999999999999988654 666777777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecCh
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~ 835 (1335)
|||||++||||++++|+|+||||||||||+++.+.+.+++.+ ...|+|+|+|||+++.++.||+|+||++|+|+++|++
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH-HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 999999999999999999999999999999999999887654 5568999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHH
Q 000713 836 HQLLASSKEFQELVS 850 (1335)
Q Consensus 836 ~~l~~~~~~~~~l~~ 850 (1335)
+|+++.++.+..++.
T Consensus 692 ~ell~~~g~y~~l~~ 706 (709)
T COG2274 692 EELLAQGGLYARLYQ 706 (709)
T ss_pred HHHHHhcChHHHHHh
Confidence 999998888877764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=655.50 Aligned_cols=537 Identities=24% Similarity=0.333 Sum_probs=442.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 298 ~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 377 (1335)
.+.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ....+.+++++++..++..+......+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888889889999999999999999999999997753322 2223334444545555566665556667788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIA 455 (1335)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~--~h~~w~~plqi~lal~lL~~~lG~a~l~ 455 (1335)
++.++...+...+|+|.++++... .+.++|++++.+ +|++.+.++... +..+...+. +++.+++++..-++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998765 567899999999 799999987542 233333443 333444444444556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 456 ALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAY 535 (1335)
Q Consensus 456 gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~ 535 (1335)
.++++++.+.+..++.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888899999999999999999999999999999999999999999999988877776666666555544
Q ss_pred HhHHHhHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000713 536 NGFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1335)
Q Consensus 536 ~~~~~~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~ 613 (1335)
...+...... .+.++.++++.+.++.+|.+..+.++.++..+..|+..++..+..+.+++++++|+.++++.++..+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4333222222 23345677888888899999999999999999999999999999999999999999999987643221
Q ss_pred cccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--
Q 000713 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-- 691 (1335)
Q Consensus 614 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-- 691 (1335)
.....+. ....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 451 ~~~~~~~-~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 451 GTRFLHR-PRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCC-CCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 1110100 1123569999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred -----------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 -----------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 -----------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+++||||+|++|++||+|||.++.+ .++++..++++.+++.++++.+|.|.+|.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 4799999999999999999999986 7888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
|++||||++++|++++||||||+||+++++++.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+++|++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~-~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK-RWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999999999987654 445689999999999999999999999999999999999997
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
++
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 54
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=635.66 Aligned_cols=543 Identities=18% Similarity=0.232 Sum_probs=434.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
+..+++.+++.++...+..++..++..+.|++++.+++.+.+..... ....++..+++..++..++.....+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRS-VLKWMPLVVIGLMILRGITSFISSYCISWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777778888888889999999998776432211 11122222333444445554444556677888
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVV 459 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v 459 (1335)
++...+...+|+|.++++.....+.+.|+++|.++.|++++.+.. ..+..+...++.+++.+++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988888999999999999999998764 3455566666777777766665544445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 000713 460 ITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR----KAY 535 (1335)
Q Consensus 460 ~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~----~a~ 535 (1335)
+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++.-++-.+...+.... ...
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677888888889999999999999999999999999999999888777765433333332222222 222
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000713 536 NGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1335)
Q Consensus 536 ~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~ 615 (1335)
..++... ..+.++.++.+....+.++++.+..++.++..+..|+..+...+..+.+++.+++||.++++.++.++...
T Consensus 255 ~~~~~~~--~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 255 IQLIASL--ALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 2222211 22344556667667788999999988988988999999999999999999999999999998654322111
Q ss_pred cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---
Q 000713 616 RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--- 692 (1335)
Q Consensus 616 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--- 692 (1335)
... .+....|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 333 ~~~---~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~ 408 (582)
T PRK11176 333 RVI---ERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR 408 (582)
T ss_pred cCC---CCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhh
Confidence 111 1123469999999999753 357999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEecCCcCCCCCHHHHhccCCC--CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 ----------TAYVSQTAWIQTGSIRENILFGSP--MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 ----------~ayv~Q~~~i~~~Tv~eNIlfg~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++|+||+|.+|++|++|||.+|.+ .++++.+++++.+++.++++.+|+|.+|.+|++|.+||||||||
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR 488 (582)
T PRK11176 409 DYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488 (582)
T ss_pred hcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH
Confidence 699999999999999999999853 68889999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++||||++++|++++|||||||||+++.+++++.+.+ ..+++|+|+|||+++.++.||+|++|++|+|++.|+++++++
T Consensus 489 i~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999876654 456899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHH
Q 000713 841 SSKEFQELVSA 851 (1335)
Q Consensus 841 ~~~~~~~l~~~ 851 (1335)
.++.|++++..
T Consensus 568 ~~~~y~~l~~~ 578 (582)
T PRK11176 568 QNGVYAQLHKM 578 (582)
T ss_pred CCChHHHHHHH
Confidence 88888888754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=649.56 Aligned_cols=539 Identities=23% Similarity=0.271 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
+...++.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.+++++++..++..++.....+...+++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888888999999999999999999987654321 1222333444444555566655555667778899
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF--HQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~--h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
++...+...+|+|.++++....++.++|+++|.++ |++++.++.... ..+...+. +++.+.+++..-++.+++.++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 303 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998888889999999998 999998875422 22223333 333333444433334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAV----QLRKA 534 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~----~~~~a 534 (1335)
++++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+. ....+
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666778888899999999999999999999999999999999999988888766544333332222 22222
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000713 535 YNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1335)
Q Consensus 535 ~~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~ 614 (1335)
+..++.... .+.++.+|++.+..+.+|.+.++++..+...+..|+..+...+..+.+++++.+||.++++.++..+..
T Consensus 384 ~~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 384 IKAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 222222222 244567788888889999999999999999999999999999999999999999999999765432211
Q ss_pred ccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---
Q 000713 615 IRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--- 691 (1335)
Q Consensus 615 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--- 691 (1335)
....+. ....+.|+++|++|+|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 462 ~~~~~~-~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 462 KKRTEL-NNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred ccccCC-CCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 110111 113457999999999964 35799999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhccCC--CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----------KTAYVSQTAWIQTGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i~~~Tv~eNIlfg~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+++||||+|++|++||+|||.++. ..++++..++++.+++.+++..+|.|.+|.+||+|.+|||||||
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 379999999999999999999983 46778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
|++||||++++|+++|||||||+||+++.+++.+.+.+ .+++|+|+|||+++.+..||+|++|++|++++.|+++|++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999887764 3689999999999999999999999999999999999999
Q ss_pred hcchHHHHHH
Q 000713 840 ASSKEFQELV 849 (1335)
Q Consensus 840 ~~~~~~~~l~ 849 (1335)
+..+.|.+++
T Consensus 697 ~~~~~y~~l~ 706 (708)
T TIGR01193 697 DRNGFYASLI 706 (708)
T ss_pred hcCCcHHHHh
Confidence 8877777765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=633.90 Aligned_cols=544 Identities=19% Similarity=0.282 Sum_probs=444.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 302 RTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLK 381 (1335)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~r 381 (1335)
..+++.+++.++++.++.++..++....|++++.+++..-.... ...-+.+++.+++..++..+......+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999998886543221 11122223333344445555544455667788888
Q ss_pred HHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 382 VRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1335)
Q Consensus 382 iR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~ 460 (1335)
+...+...+|+|.++.+.....+.+.|+++|.++.|++++.++.. .+..++...+.+++++++++..-++.+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999998888888999999999999999998654 4555666666666666666654444555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000713 461 TITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540 (1335)
Q Consensus 461 vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~ 540 (1335)
++.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+....+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888889999999999999999999999999999999999999888877766655554444433333333222
Q ss_pred hHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 541 WSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 541 ~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
..... .+.++.++.+....+.+|++.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..+.... .
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~ 323 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-A 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-C
Confidence 22221 23445667777778899999999999999999999999999999999999999999999976543222111 1
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
. ...+..|+++|++|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~--~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 324 I--ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred C--CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 1 1123469999999999754 35799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCC--CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+++|+||+|++|++|++|||.++. +.++++.+++++.|++.+++..+|+|.+|.+|++|.+||||||||++|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 379999999999999999999986 478889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcch
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~ 843 (1335)
|||++++|+|+|||||||+||+++++++.+.+.+ ..+++|+|+|||+.+.++.||+|++|++|++++.|+++++++.++
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 9999999999999999999999999999876654 457899999999999999999999999999999999999998777
Q ss_pred HHHHHHHH
Q 000713 844 EFQELVSA 851 (1335)
Q Consensus 844 ~~~~l~~~ 851 (1335)
.+.++.++
T Consensus 560 ~~~~~~~~ 567 (571)
T TIGR02203 560 LYAQLHNM 567 (571)
T ss_pred HHHHHHHH
Confidence 77776543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=627.06 Aligned_cols=549 Identities=21% Similarity=0.271 Sum_probs=430.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIG 379 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 379 (1335)
.++.+++.+++.+.+..++.++..++..+.|+++..+++.+-....... -..+++.+++..++..+......+...+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL-LNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888888889999999999999999999997432221111 112222233333344444455566778899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 380 LKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 380 ~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
.++...+...+|+|.++++.....+.+.|+++|.+++|++++.++.. .+..+....+.+++++++++..-.+.+++.++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 166 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999988777778899999999999999988753 34444444445555544443332222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~ 538 (1335)
.+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556788888899999999999999999999999999999999998888877655444443333322222221
Q ss_pred HHh--HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 000713 539 LFW--SSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIR 616 (1335)
Q Consensus 539 ~~~--~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~ 616 (1335)
+.. ..-..+..+.++.+.+..+.+|++.+++...+...+..|+..++..+..+.+++++++||.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 111 112234445567777778899999999999999999999999999999999999999999999986542111110
Q ss_pred ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----
Q 000713 617 QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----- 691 (1335)
Q Consensus 617 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----- 691 (1335)
......+....|+++|++|+|+++.++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 327 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 327 PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 000001123469999999999764336799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|.|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 4799999999999999999999875 4677888999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||||++++|+++|||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++.
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~ 565 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcC
Confidence 99999999999999999999999999888876654 45789999999999999999999999999999999999999888
Q ss_pred hHHHHHHH
Q 000713 843 KEFQELVS 850 (1335)
Q Consensus 843 ~~~~~l~~ 850 (1335)
+.|.++..
T Consensus 566 ~~~~~l~~ 573 (576)
T TIGR02204 566 GLYARLAR 573 (576)
T ss_pred ChHHHHHh
Confidence 77777654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-63 Score=622.65 Aligned_cols=542 Identities=19% Similarity=0.249 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 302 RTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEG-YLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
..+.+.+++.++...++.++..++..+.|+++..+++.+.......... ..+++++++..++..++.....+...+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 15 LAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888999999999999999999999764332211111 222333444445555555555666778888
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGLATIAALVV 459 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~-h~~w~~plqi~lal~lL~~~lG~a~l~gl~v 459 (1335)
++...+...+|+|.++++.....+.++|+++|.++.|++++.+..... ..+....+.+++++.+++..-.+.+++.+++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~ 174 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888888899999999999999998875433 3333333333333333332222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000713 460 ITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAY---- 535 (1335)
Q Consensus 460 ~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~---- 535 (1335)
+++.+.+.....+..++..++..+..++..+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667777778888888888899999999999999999999999988887655433332221111111
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000713 536 NGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1335)
Q Consensus 536 ~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~ 615 (1335)
...+......++.++ .+.+ ...+.++.+.++.++.++..+..|+..++..+..+.++++|.+||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 111111111111112 2223 34677999999999999999999999999999999999999999999997654322111
Q ss_pred cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---
Q 000713 616 RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--- 692 (1335)
Q Consensus 616 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--- 692 (1335)
..+ . ..+.|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 333 -~~~--~-~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 333 -DRP--L-QSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -ccC--C-CCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 111 1 2346999999999974 257999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 ----------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ----------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++||||+|.+|++|++|||.++.+.++++.+++++++++.++++.+|.|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 7999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||||++++|+|+|||||||+||+++.+++.+.+.+ ..+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAA-VREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999876643 44689999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHh
Q 000713 843 KEFQELVSAH 852 (1335)
Q Consensus 843 ~~~~~l~~~~ 852 (1335)
+.|.++.+..
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 9999887654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=616.22 Aligned_cols=528 Identities=23% Similarity=0.289 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 000713 320 LIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSN 399 (1335)
Q Consensus 320 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~ 399 (1335)
++..++..+.|++++.+++.+..........+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556667889999999997754321122233344445455555555554445566678889999999999999999998
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 400 AARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVITITVLCNTPLAKLQHKF 477 (1335)
Q Consensus 400 ~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~-a~l~gl~v~vl~~~~~~~~~~~~~~~ 477 (1335)
....++.+|+++|.+++|++++.+.. ..+..++..++.+++++++++..++| .+++.++++++.+.+...+.+..++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999998664 34556666656555555555444554 34444445555555666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHH--HHHHHHHHHHH
Q 000713 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSP--VLVSTATFGAC 555 (1335)
Q Consensus 478 q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p--~lv~~~tF~~~ 555 (1335)
.++..+..++..+...|.++|+++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999998777765433222222222222222111111111 12334456777
Q ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEE
Q 000713 556 YFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASF 635 (1335)
Q Consensus 556 ~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~ 635 (1335)
.+.++.+|.+.+++++.+...+..|+..++..+..+.+++++.+||.++++.++..+......+ . .+..|+++|++|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~--~-~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP--E-GRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC--C-CCCcEEEEEEEE
Confidence 7778899999999999999999999999999999999999999999999976542211111111 1 234699999999
Q ss_pred EecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcC
Q 000713 636 SWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWI 702 (1335)
Q Consensus 636 ~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i 702 (1335)
+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 357999999999999999999999999999999999999999999999873 6999999999
Q ss_pred CCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 703 QTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 703 ~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
+++|++|||.++.+ .++++.+++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999864 67778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHh
Q 000713 782 AVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 852 (1335)
+||+++.+++.+.+.+ ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++.+.+.+++..+
T Consensus 481 ~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999999887654 457899999999999999999999999999999999999998888888877653
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=613.39 Aligned_cols=539 Identities=21% Similarity=0.264 Sum_probs=420.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
+++.+++.+++..++.++..++..+.|+++..+++.+..+. .... +++.+.+..++..+......+...++..++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888999999999999999999999776432 1111 1111111222222222223445677888889
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+..+....+..++.+++++..-.+.+++.++++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 168 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIV 168 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999876532 333322232222233322222222233334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEIL----RNVEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~----R~~El~~l~~~~~~~a~~~~ 538 (1335)
...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+. ++.+.+..+..........+
T Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK13657 169 YTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888899999999999999999999999999999999999877666543 33333333333222222222
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 539 ~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
+. .-..+.++.++.|.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+......
T Consensus 249 ~~--~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 326 (588)
T PRK13657 249 AS--TITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAI 326 (588)
T ss_pred HH--HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC
Confidence 11 1223455677888888889999999999999999999999999999999999999999999997643221111100
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
+. ...+..|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~-~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 327 DL-GRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT 403 (588)
T ss_pred Cc-CCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC
Confidence 11 1123469999999999742 4699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.+.+..+|.|.+|.+|++|.+||||||||++||
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 4799999999999999999999864 567778889999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~ 844 (1335)
||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++.+.|+++++++..+.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~ 562 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGR 562 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCCh
Confidence 999999999999999999999999999876654 3468999999999999999999999999999999999999988888
Q ss_pred HHHHHHHh
Q 000713 845 FQELVSAH 852 (1335)
Q Consensus 845 ~~~l~~~~ 852 (1335)
+.+++...
T Consensus 563 y~~l~~~~ 570 (588)
T PRK13657 563 FAALLRAQ 570 (588)
T ss_pred HHHHHHHh
Confidence 88887643
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=610.45 Aligned_cols=539 Identities=21% Similarity=0.283 Sum_probs=413.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAE-SKAG--FKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
+.+.+++.++++.++.++..++....|.+++.+++..- .+.. ........++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999998642 2211 01111112223333444555555555567778899
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILF---HAVGLATIAA 456 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~---~~lG~a~l~g 456 (1335)
++...+...+|+|.++++....++..+|++++.+++|++++.++.. .+..+....+.+++++++++ +.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888999999999999999998764 34444444555544444443 3333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
+.+ +.+.+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLL--LLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 122234556677788888889999999999999999999999999999888887765444333333333222222
Q ss_pred hHHHhHHH--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000713 537 GFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRL-VQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1335)
Q Consensus 537 ~~~~~~~p--~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~-L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~ 613 (1335)
..+..... ..+.++.++.+. .++.++.+..++++.+..+ ...|+..++..+..+.++++|.+||.++++.++..++
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22211111 122334455555 4667888887766655433 3468888899999999999999999999986542111
Q ss_pred cccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-
Q 000713 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK- 692 (1335)
Q Consensus 614 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~- 692 (1335)
.....+. . ....|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 327 ~~~~~~~-~-~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 327 PTTSTAA-A-DQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred CcccCCC-C-CCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 1000111 1 23569999999999753 247999999999999999999999999999999999999999999999983
Q ss_pred ------------EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ------------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ------------~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++||||+|++|++|++|||.++.+ .++++..++++.+++.++++. |+|.+|.+||+|.+|||||||
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrq 482 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQR 482 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHH
Confidence 799999999999999999999875 577788999999999999999 999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
|++||||++++|++++||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.+|+|++|++|++++.|+++|++
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~-~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999998876544 45789999999999999999999999999999999999999
Q ss_pred hcchHHHHHHH
Q 000713 840 ASSKEFQELVS 850 (1335)
Q Consensus 840 ~~~~~~~~l~~ 850 (1335)
++++.|.++++
T Consensus 562 ~~~g~y~~l~~ 572 (574)
T PRK11160 562 AQQGRYYQLKQ 572 (574)
T ss_pred hcCcHHHHHHh
Confidence 98888887754
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=610.90 Aligned_cols=520 Identities=22% Similarity=0.248 Sum_probs=413.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 307 CHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLL 386 (1335)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L 386 (1335)
.+++.++...++.++..++..+.|++++.+++.+-.... ....+.+++.+++..++..++.....+...+++.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999996643221 1223334555555666667776667778888999999999
Q ss_pred HHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 000713 387 TAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIAL--IILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 387 ~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~--~h~~w~~plqi~lal--~lL~~~lG~a~l~gl~v~vl 462 (1335)
...+|+|.++++.. ..+...+.+.+|++++.+.... +..+...++.++..+ +.+.+.+++.++++ +++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~---~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGG---AVV 153 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHH
Confidence 99999999998762 2345678889999999886543 333444444333322 22223334333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
.+.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.+++++..++..+...+.....+....+...
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888999999999999999999999999999999999988876665555444444433333222222
Q ss_pred HH--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCC
Q 000713 543 SP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN 620 (1335)
Q Consensus 543 ~p--~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~ 620 (1335)
.. ..+.++.++.+...++.+|++.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..++.. ..+
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~- 311 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLP- 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCC-
Confidence 11 22344567778778889999999999999999999999999999999999999999999997654322111 111
Q ss_pred CCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------
Q 000713 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------- 691 (1335)
Q Consensus 621 ~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------- 691 (1335)
. .+..|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 312 -~-~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 312 -E-PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred -C-CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 1 23469999999999743 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.+.++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 3799999999999999999986654 67788888999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++++|+++|||||||+||+++++.+.+.+.+...+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999998766554446899999999999888899999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=609.00 Aligned_cols=505 Identities=21% Similarity=0.249 Sum_probs=387.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
+.+.+++.++...++.++..++..+.|++++.+++.+........ -+.+.+++++..++..+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLY-LSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888899999999999999999987653321111 1111111212333344444444455667888889
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++++.....+.++|+++|.++.|++++.+.... +..+....+.+++++++++..-...+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999987653 33344444444444444433322233333332223
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 000713 463 TVLCN-TPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFW 541 (1335)
Q Consensus 463 ~~~~~-~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~ 541 (1335)
+..+. ....+..++..++..+..++..+...|.++|+++||.|++|+.+.+++++..++..+...+.....+....+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33344445666777888899999999999999999999999999999888666555554444444443333322
Q ss_pred HHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-c
Q 000713 542 SSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ-K 618 (1335)
Q Consensus 542 ~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~-~ 618 (1335)
.... .+.++.++.+.+.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+||.++++.++..++.... .
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 2222 233345666777788899999999999889999999999999999999999999999999765432211100 0
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
....+....|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHH
Confidence 0001123469999999999753 4699999999999999999999999999999999999999999999999
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+++||||+|++|++||+|||.+|.+ .++++.+++++.+++.+++..+|+|.+|.+||+|.+||||||||++|||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 6899999999999999999999865 5788899999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCC
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~ 812 (1335)
|++++|+|+|||||||+||+++++.|.+.+. ...+++|+|+|||++
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 9999999999999999999999999988765 456789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-62 Score=622.72 Aligned_cols=548 Identities=21% Similarity=0.249 Sum_probs=440.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 298 ~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 377 (1335)
.+.++..++.+++.+....+..++..++..+.|++++.+++.+-.... ...-..++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888899999999999999999999997753221 1223334445555555666666666667778
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
++.++...+...+|+|.++++.....+.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888889999999999 69999998753 333333333333344444444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666667777888888888999999999999999999999999999999888887765554444444433333332
Q ss_pred hHHHhHHH--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000713 537 GFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1335)
Q Consensus 537 ~~~~~~~p--~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~ 614 (1335)
..+..... ..+.++.+|++....+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22222111 1233466788877888999999999999999999999999999999999999999999999875432211
Q ss_pred ccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--
Q 000713 615 IRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-- 692 (1335)
Q Consensus 615 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-- 692 (1335)
...+. ...+..|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 445 -~~~~~-~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i 521 (694)
T TIGR01846 445 -GLAAL-PELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521 (694)
T ss_pred -CCCCC-CCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh
Confidence 10111 1123579999999999753 357999999999999999999999999999999999999999999999983
Q ss_pred -----------EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 -----------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 -----------~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++||+|++.++++|++|||.++.+ .++++..++++.+++.+.++.+|.|.+|.+|++|.+||||||||
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 699999999999999999999864 56778888999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++||||++++|+++|||||||+||+++++++.+.+.+ ..+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999886654 457899999999999999999999999999999999999998
Q ss_pred cchHHHHHHHH
Q 000713 841 SSKEFQELVSA 851 (1335)
Q Consensus 841 ~~~~~~~l~~~ 851 (1335)
.++.|.++++.
T Consensus 681 ~~~~y~~l~~~ 691 (694)
T TIGR01846 681 LQGLYARLWQQ 691 (694)
T ss_pred cCChHHHHHHh
Confidence 88888887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-62 Score=610.98 Aligned_cols=536 Identities=23% Similarity=0.309 Sum_probs=415.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHH
Q 000713 306 ICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF--KYEGYLLAITLFLAKILESLS--QRQRYF--RSRLIG 379 (1335)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~--~~~~~~--~~~r~g 379 (1335)
+..|+.++++.+.+++..+...+..+++..+++-+..++.+ ......+++.+++..++..++ .++|+| ...++.
T Consensus 660 ~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt 739 (1228)
T KOG0055|consen 660 KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLT 739 (1228)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888899999999998888888998888877643321 222222444333333333322 344444 355666
Q ss_pred HHHHHHHHHHHHHHHHcCCh--hhhcCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 380 LKVRSLLTAAIYRKQLRLSN--AARLMHSGGEIMNYVTVDAYRIGEFPF-----WFHQIWTTSVQLCIALIILFHAVGLA 452 (1335)
Q Consensus 380 ~riR~~L~~~Iy~K~L~ls~--~~~~~~s~G~IvNlms~D~~ri~~~~~-----~~h~~w~~plqi~lal~lL~~~lG~a 452 (1335)
+|+|. ..|+|.|+... .+..+++ |.+.+.+++|+..+...+. .+..+-+...-+++|+++-|+ -
T Consensus 740 ~R~R~----~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~----l 810 (1228)
T KOG0055|consen 740 KRLRS----MMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR----L 810 (1228)
T ss_pred HHHHH----HHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 66665 45666666543 3445677 9999999999987765432 122222333344444444333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 453 TIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532 (1335)
Q Consensus 453 ~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~ 532 (1335)
++.++++.+++....+...+.+.+...+.++..++--+..+|++.|||+||.++-|++|.+.+.+.-++=.+...+...+
T Consensus 811 alv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i 890 (1228)
T KOG0055|consen 811 ALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888899999999999999999999999999999999999999998887765322222222222222
Q ss_pred HHHHhHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Q 000713 533 KAYNGFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE- 609 (1335)
Q Consensus 533 ~a~~~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e- 609 (1335)
..+...+..+..++ .....||.+....+..++.++|.++..+.+-...+.+.....+.+..|+.|..+|.+.++.+.
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~ 970 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPT 970 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCC
Confidence 33322222222222 233456777777788999999999887777666666777777788999999999999998754
Q ss_pred CCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000713 610 LQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v 689 (1335)
++.+.. .....+...+.|+++|++|+||.+++.++|+|+||+|++|+.+|+|||+||||||.+.+|.+.++|++|.|.+
T Consensus 971 i~~~~~-~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~I 1049 (1228)
T KOG0055|consen 971 IDPDST-SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKI 1049 (1228)
T ss_pred CCCCCC-CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 444321 1111111456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCe-------------EEEEecCCcCCCCCHHHHhccCC-CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 690 YGK-------------TAYVSQTAWIQTGSIRENILFGS-PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 690 ~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~-~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
||+ +|.|+|+|.+|++||||||.+|. ..++++..++.+....++.+..+|+|.+|.+||+|.+|||
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 983 79999999999999999999993 3577777788888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecCh
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~ 835 (1335)
|||||||||||+.+||+||||||.|||||.++. ++.++.++....|+|.|+|+|+++.+++||.|+|++||+|+|+|++
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSE-rvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESE-RVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhH-HHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccH
Confidence 999999999999999999999999999999986 5667888888899999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHh
Q 000713 836 HQLLASSKEFQELVSAH 852 (1335)
Q Consensus 836 ~~l~~~~~~~~~l~~~~ 852 (1335)
++|++.++.+.+++..+
T Consensus 1209 ~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1209 DELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred HHHHhCCCchHHHhhhc
Confidence 99999999898887654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=597.01 Aligned_cols=539 Identities=19% Similarity=0.245 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
.++.+++.++...++.++..++..+.|++++.+++.+...+. . ..+.+.+++..++..+...-..+...+++.++|
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999999997754321 1 111111122223333333333455678888899
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++++.....++++|++++.++.|++.+.++.. .+..+....+.+++++++++..-...+++.++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888999999999999999987643 333444445555444444433222233333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRN----VEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~----~El~~l~~~~~~~a~~~~ 538 (1335)
...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++++.-+ .+.+..+.......+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777888888888888999999999999999999999999988777665433 233322222222222222
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 539 ~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
+... ..+.++.++.+.+.++.++.+.+++.+.++..+..|+..+...+..+.+++++++|+.++++.++..++.....
T Consensus 249 ~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 326 (585)
T TIGR01192 249 ASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP 326 (585)
T ss_pred HHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC
Confidence 2111 12344567777777889999999999999999999999999999999999999999999997653221111100
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
+. ......|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~-~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 403 (585)
T TIGR01192 327 EL-PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT 403 (585)
T ss_pred CC-CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC
Confidence 01 1123469999999999742 4689999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
.++|++|+|+++++|++|||.++.+ .++++.+++++.+++.+.+..+|.|.+|.+|++|.+||||||||++||
T Consensus 404 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 404 RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred HHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 3799999999999999999999864 456677788888889999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~ 844 (1335)
||++++|+++|||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++++.
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 562 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGR 562 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCCh
Confidence 99999999999999999999999999987654 44568999999999999999999999999999999999999988888
Q ss_pred HHHHHHHh
Q 000713 845 FQELVSAH 852 (1335)
Q Consensus 845 ~~~l~~~~ 852 (1335)
+.++....
T Consensus 563 y~~l~~~~ 570 (585)
T TIGR01192 563 FYKLLRRS 570 (585)
T ss_pred HHHHHHhC
Confidence 88887644
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=598.64 Aligned_cols=534 Identities=25% Similarity=0.354 Sum_probs=416.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLT 387 (1335)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~ 387 (1335)
++ .+..+.++.++..++....|.++..+++.+... ......+...+++..++..++..-..+...+++.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 788888899999999999999999999887611 11111222222222223334444444555666688888899
Q ss_pred HHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000713 388 AAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGL-ATIAALVVITITVL 465 (1335)
Q Consensus 388 ~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~-h~~w~~plqi~lal~lL~~~lG~-a~l~gl~v~vl~~~ 465 (1335)
..+|+|.++++....+++.+|++++.+++|++.+.+..... ..+-..++.++..+++++ .+.| .++..++..+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 99999999999888888889999999999999999887654 222223333333333332 2333 23333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H-hHH
Q 000713 466 CNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFL-F-WSS 543 (1335)
Q Consensus 466 ~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~-~-~~~ 543 (1335)
....+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++..+.-+...+...+.....+....+ . ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556656688888888999999999999999999999999999776666554333333322222222222111 1 111
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCC
Q 000713 544 PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623 (1335)
Q Consensus 544 p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 623 (1335)
-..+.++.++.+.+..+.++.+.+.+.+.+...+..|+..+...+..+.++..|.+|+.++++.++...+..... ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~---~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL---KD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCC---CC
Confidence 122334445566666777999999999999999999999999999999999999999999998754322111110 11
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
.+..|+++|++|+|++ ++++|+|+||++++||.+||+||+|||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 3456999999999975 35899999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 692 -~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
+++||||+|++|++||+|||.+|++ .++++..++++.+++.+.++.+|+|.+|.+||+|.+||||||||++||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 3799999999999999999999988 57788889999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHH
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~ 849 (1335)
||+|++||||||+||+++.+.+.+.+.. ..++||+|+|+|+++.+..||+|+||++|+|++.|+++||+++++.|.++.
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHH
Confidence 9999999999999999999999877653 347899999999999999999999999999999999999999999999888
Q ss_pred HHh
Q 000713 850 SAH 852 (1335)
Q Consensus 850 ~~~ 852 (1335)
+.+
T Consensus 562 ~~~ 564 (567)
T COG1132 562 QAQ 564 (567)
T ss_pred HHh
Confidence 654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=594.89 Aligned_cols=506 Identities=23% Similarity=0.264 Sum_probs=396.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAE-SKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLL 386 (1335)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L 386 (1335)
+|+.++...++.++..++..+.|++++.+++.+. +.. ....-+.+++.+++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999873 322 12222334444445555566665556677788899999999
Q ss_pred HHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000713 387 TAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILF---HAVGLATIAALVVITI 462 (1335)
Q Consensus 387 ~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~---~~lG~a~l~gl~v~vl 462 (1335)
...+|+|.++++.....+.++|+++|.+++|++++.++.. .+..+....+.+++++++++ +.+++..+ +.+++
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l---~~~~l 156 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILL---LTAPL 156 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHH
Confidence 9999999999988877888999999999999999998754 45555555555555544443 33333333 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNV----EYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~----El~~l~~~~~~~a~~~~ 538 (1335)
...+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++ ..+..+..........+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556777778888889999999999999999999999999999988887654333 33222222222222222
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 539 ~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
+.... . +.++.++.+.+..+.+|.+.++.++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+..+ .
T Consensus 237 ~~~~~-~-~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~ 313 (529)
T TIGR02857 237 FATLS-V-ALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-V 313 (529)
T ss_pred HHHHH-H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-C
Confidence 11111 1 1112344444557789999999999999999999999999999999999999999999975432211111 1
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------ 692 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------ 692 (1335)
+. . ....|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 314 ~~-~-~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~ 390 (529)
T TIGR02857 314 TA-A-PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD 390 (529)
T ss_pred CC-C-CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC
Confidence 10 1 22469999999999753 357999999999999999999999999999999999999999999999984
Q ss_pred -------EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 -------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 -------~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++||+|+|+++++|++|||.++.+ .++++.+++++.+++.++++.+|+|.+|.+||+|.+||||||||++||
T Consensus 391 ~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 391 ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred HHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 799999999999999999999865 567788999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
||++++|++++||||||+||+++.+.+++.+.+ ..+++|+|+|||+++.++.||+|++|
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999876654 45789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=553.50 Aligned_cols=530 Identities=22% Similarity=0.303 Sum_probs=421.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 314 MSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRK 393 (1335)
Q Consensus 314 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K 393 (1335)
...++..+..++...+-.++..+++-+-..+. ...-+.++++++++.++..++.---....++.+.++|..+...+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777766665533321 22233445555666666666665556677889999999999999999
Q ss_pred HHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 394 QLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WF---HQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTP 469 (1335)
Q Consensus 394 ~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~---h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~ 469 (1335)
..+++...-+...+|++.+++..-++.+...+. |+ ...-..|+-+.+++++..+.-|+..+..+. ++....+.
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~P---lIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAP---LIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHH
Confidence 999998888888999999999999998876542 33 333456777888877777765554444433 33334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHhHHHH
Q 000713 470 LAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLRKAYNGFLFWSSPV 545 (1335)
Q Consensus 470 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I----~~~R~~El~~l~~~~~~~a~~~~~~~~~p~ 545 (1335)
+++..++..++.++....--...-+-|+|+.++|.|+-.+...++| ++.|+.-++.+|-.....++..++...+-
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi- 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI- 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6666677777777777777778888999999999999876655555 56888888888877666666655544332
Q ss_pred HHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCC
Q 000713 546 LVSTATFGACYFLN-VPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENV 624 (1335)
Q Consensus 546 lv~~~tF~~~~l~~-~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 624 (1335)
....+ +...-+.+ ++++-..+|.+|-+---.-.|++.+....-.-.++..+.+++..|++.|....+...........
T Consensus 239 AlvAv-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 239 ALVAV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HHHHH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 22223 33344556 59999999999887777778999999999999999999999999999877544332211111102
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
...++.+|++|.|++. +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 2345556999999864 3899999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
+++||+|+|.++++|+||||.++++ .+++...++++..++.+.++. |.|.+|.|||+|.+|||||+||++||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 3799999999999999999999988 567788999999999999998 99999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHH
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~ 850 (1335)
+++|||||||++||+++++.|.+.+ ....++||+|++||+++.+..+|+|++|++|+++++|+++++.++++.|.+++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l-~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQAL-QELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHH-HHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 9999999999999999998887654 445567999999999999999999999999999999999999999999999887
Q ss_pred Hhh
Q 000713 851 AHK 853 (1335)
Q Consensus 851 ~~~ 853 (1335)
.+.
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=631.95 Aligned_cols=543 Identities=18% Similarity=0.217 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 306 ICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSL 385 (1335)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~ 385 (1335)
+.+++.++++.++.++..++..+.|+++..+++-+-+.......+..+++.+++..++..++..-..|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566688888899999999999999999999854332111112333344444444444444444455667788888888
Q ss_pred HHHHHHHHHHcCChhhhc--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 386 LTAAIYRKQLRLSNAARL--MHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 386 L~~~Iy~K~L~ls~~~~~--~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
+...+|+|.++++....+ ++++|++++.+++|++.+.++.. .+..+...++.+++++++++. +.|. .+++++++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 999999999999877654 48899999999999999987643 233333344444444333322 2221 11111222
Q ss_pred HHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000713 463 TVLCNTPLAKLQHKFQ-TKL-----------------MVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYK 524 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q-~~~-----------------m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~ 524 (1335)
+..+...+.+..+... ++. .+..++....++|.++|||+||.|+-|+.+.+++.+.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2222233333222211 111 1112334678999999999999999999999988875544444
Q ss_pred HHHHHHHHHHHHhHHHhHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 525 WLSAVQLRKAYNGFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIV 602 (1335)
Q Consensus 525 ~l~~~~~~~a~~~~~~~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~ 602 (1335)
..++.....+....+..+... .+.++.+|.+.+..+.++.+.++.++..+.....++..+...++.+.++++|.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333222222222222 234556788888888999999998886665555678888899999999999999999
Q ss_pred HHhcCCC-CCcccccccC--CCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC
Q 000713 603 NFLEAPE-LQSMNIRQKG--NIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 603 ~fL~~~e-~~~~~~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~ 679 (1335)
++++.++ .+.......+ .....++.|+++|++|+|++++++++|+|+||+|++|+.+|||||+|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997643 2111100000 001123569999999999865456899999999999999999999999999999999999
Q ss_pred CCC------------------------------------------------------CCcEEEEcCe-------------
Q 000713 680 VPH------------------------------------------------------TQGTIQVYGK------------- 692 (1335)
Q Consensus 680 ~~~------------------------------------------------------~~G~i~v~g~------------- 692 (1335)
++| ++|+|.++|.
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 6999999983
Q ss_pred EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 693 TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 693 ~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
+|||+|+|.+|++||||||.+|.+ ..++..+++++.+++.+.+..+|+|.+|.+||+|.+|||||||||+|||||+++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999965 5677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccccCCeEEEEeC----CeEE-EecChHHHHh-cchH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPAFDSVLLMSD----GEIL-RAAPYHQLLA-SSKE 844 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~~D~iivl~~----G~i~-~~g~~~~l~~-~~~~ 844 (1335)
+||||||||||||+++.+.|.+.+.+.. .+++|+|+|||+++.++.||+|++|++ |+++ ++|+++||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999998877665443 368999999999999999999999999 9955 8999999997 4788
Q ss_pred HHHHHHH
Q 000713 845 FQELVSA 851 (1335)
Q Consensus 845 ~~~l~~~ 851 (1335)
|.++++.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8887653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=625.70 Aligned_cols=474 Identities=18% Similarity=0.201 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 375 SRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT 453 (1335)
Q Consensus 375 ~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~ 453 (1335)
....+.+.-..+-..+|++.++.+..-.+...+|+|+|.++.|++.+.+... .+..+...++.++.++++++..-.+.+
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777788889999888777888999999999999999998654 455556667777666666544333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
++.++++++.+.++.+..+..++.++...+.++...+..+|.++|+++||.|+||+.|.++..+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555556666666667777888899999999999999999999999887776555444332222222
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 000713 534 AYNGFLFWSSPVLVSTATFGACYF-LNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1335)
Q Consensus 534 a~~~~~~~~~p~lv~~~tF~~~~l-~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~ 612 (1335)
.+..........++ ++..+.+.+ ..+.++++.+..++.+...+..|+..+......+.++.+|.+||.+|++.++.++
T Consensus 1189 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1189 RWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 22221111111111 112222333 3467999999999998889999999999999999999999999999997653222
Q ss_pred ccc--cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc
Q 000713 613 MNI--RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY 690 (1335)
Q Consensus 613 ~~~--~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~ 690 (1335)
... ...+..-+.++.|+++|++|+|+++. .++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+|
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID 1346 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEEC
Confidence 111 11111101346799999999997543 479999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 691 G-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 691 g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
| +++||||+|.+|++||||||....++++++..++++.|++.+.+..+|.|.+|++||+|.+|||||
T Consensus 1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 8 379999999999999999998434677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|+|+++.+..+|+|+||++|+|+|.|+++|
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-TIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999877765 4455567999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHH
Q 000713 838 LLASSKEFQELVSA 851 (1335)
Q Consensus 838 l~~~~~~~~~l~~~ 851 (1335)
|+++++.|.+++++
T Consensus 1506 Ll~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1506 LLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHhCCCHHHHHHHH
Confidence 99888888888764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-57 Score=613.74 Aligned_cols=476 Identities=17% Similarity=0.221 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 375 SRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLAT 453 (1335)
Q Consensus 375 ~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~ 453 (1335)
..+.+.++-..+...+|++.++.+..-.+.+.+|+|+|.++.|++.+.+.. ..+..+....++++.+++++.....+..
T Consensus 977 ~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~ 1056 (1622)
T PLN03130 977 LIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL 1056 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777888999999999888888999999999999999998865 3455555566666555554433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
++.+.++++++.+..+..+..++.++..+..+....+..+|.++|+++||.|++|+.|.++..+..+...+.........
T Consensus 1057 ~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1057 WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333344444455555566666677778889999999999999999999998877665554443322211111
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHh-cCccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 534 AYNGFLFWSSPVLVSTATFGACYFL-NVPLY-----ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 534 a~~~~~~~~~p~lv~~~tF~~~~l~-~~~Lt-----~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
.+..........++. +..+.+.+. ++..+ ++.+-..++....+..++..+......+.++.+|++|+.++++.
T Consensus 1137 ~wl~~~l~~~~~~~i-~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1137 RWLAIRLETLGGLMI-WLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111111111111111 111122222 22211 23333344444556667777777788889999999999999976
Q ss_pred CCCCccccc--ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 608 PELQSMNIR--QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 608 ~e~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
|+..+...+ ..+...+.++.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 543221111 111111134579999999999653 24799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|.+|| +++||||+|.+|++||||||.++.+.++++..++++.|++.+.++.+|.|.+|++||+|.+
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 999998 3799999999999999999999888888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..||+|+||++|+|+|.
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999998877654 4455679999999999999999999999999999999
Q ss_pred cChHHHHhc-chHHHHHHHHhh
Q 000713 833 APYHQLLAS-SKEFQELVSAHK 853 (1335)
Q Consensus 833 g~~~~l~~~-~~~~~~l~~~~~ 853 (1335)
|+|+||+++ ++.|.++++...
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHcC
Confidence 999999986 578888876543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=608.18 Aligned_cols=473 Identities=18% Similarity=0.216 Sum_probs=353.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 376 RLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATI 454 (1335)
Q Consensus 376 ~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l 454 (1335)
.+.+.++-..+...+|++.++.+..-.+++.+|+++|.+++|++.+.+.+. .+..+....++++.+++++.....+..+
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666778888888887777788999999999999999988654 3444444555555555544333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 455 AALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKA 534 (1335)
Q Consensus 455 ~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a 534 (1335)
+.+.+.++++.+..+..+..++.++..+..+..-.+..+|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333444556666677777888899999999999999999999988776665544433222111111
Q ss_pred HHhHHHhHHHHHHHHHHH-HHHHHh-cCccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 535 YNGFLFWSSPVLVSTATF-GACYFL-NVPLY-----ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 535 ~~~~~~~~~p~lv~~~tF-~~~~l~-~~~Lt-----~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
+..+...... ..++.+ +.+.+. .+.+. ++.+-.+++....+..|+..+...+..+.++.+|++||.++++.
T Consensus 1135 wl~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1135 WLTIRLETLG--GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1111110000 111112 222222 22221 22222344555567788999999999999999999999999976
Q ss_pred CCCCccccc--ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 608 PELQSMNIR--QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 608 ~e~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
|+..+...+ ..+...+.++.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 543221111 111111134579999999999643 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|.+|| +++||||+|.+|++||||||.++.+.++++..++++.+++.+.++.+|.|.+|++||+|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 3799999999999999999999888888889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..+|+|++|++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998877654 4555679999999999999999999999999999999
Q ss_pred cChHHHHhcch-HHHHHHHHh
Q 000713 833 APYHQLLASSK-EFQELVSAH 852 (1335)
Q Consensus 833 g~~~~l~~~~~-~~~~l~~~~ 852 (1335)
|+|+||+++++ .|.++++..
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHh
Confidence 99999998764 788887653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=519.43 Aligned_cols=519 Identities=22% Similarity=0.298 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 000713 323 VLTLSAGPLFLNAFILVAESKAG-F--KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSN 399 (1335)
Q Consensus 323 ~~~~~~~P~ll~~li~~~~~~~~-~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~ 399 (1335)
-.+....|++++..++-+++.+. + .......+.+++++.+..+++.---.+....+..++--....-+|+..+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44556789999999998863221 1 11223344455556666665554445555566666666677788999999988
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000713 400 AARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATI-AALVVITITVLCNTPLAKLQHKF 477 (1335)
Q Consensus 400 ~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l-~gl~v~vl~~~~~~~~~~~~~~~ 477 (1335)
....+..+|++.+.|..-...+.+++. .+..+.-..+++.+....+++..|++.. ..++.+.....+...+.++-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 888888999999999888888887754 3444555667888888899999998543 33444445556677778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHH
Q 000713 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEI-LRNVEYKWLSAVQLRKAYN---GFLFWSSPVLVSTATFG 553 (1335)
Q Consensus 478 q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~-~R~~El~~l~~~~~~~a~~---~~~~~~~p~lv~~~tF~ 553 (1335)
+++..++.|+-.+..-+.|.|-.+||.|+=|+.-.+++.+ +++.|-..++-...+...+ ..+|... ++.+...+
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~--~~~im~l~ 280 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA--LTFIMVLG 280 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999988888765 4555554444333332222 1222111 11112222
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEee
Q 000713 554 ACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSA 633 (1335)
Q Consensus 554 ~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~ 633 (1335)
..-..++.+|.+...-..+++..|+.|+..+...+..+.|+..-..-....++.++...+. ..|. ...++.|+++|+
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i-~~~~~~I~F~dV 357 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI-ELFGGSIEFDDV 357 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc-ccCCCcEEEEee
Confidence 2223456799999999999999999999999999999998887776665544333211110 0111 113456999999
Q ss_pred EEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCC
Q 000713 634 SFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTA 700 (1335)
Q Consensus 634 ~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~ 700 (1335)
+|+|++ ++++|+++||+|++||.|||+|+|||||||++++|+++.+ ++|+|.++|. ||||||+.
T Consensus 358 ~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 999985 3569999999999999999999999999999999999999 9999999994 79999999
Q ss_pred cCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 701 WIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 701 ~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
.+||.||.+||.+|.+. ..++..++.+..++++-+..+|+|.+|.+||+|..|||||||||+||||++.||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 99999999999999875 44455566666689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHH
Q 000713 780 FSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~ 850 (1335)
||+||.++.+.+++.+.+ ...+||+|+|-|+++.++.+|+|+++++|++.+.|+++|++.+.+.+.++..
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999987655 7789999999999999999999999999999999999999997666766653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=515.39 Aligned_cols=535 Identities=23% Similarity=0.337 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAG-FKYEGY-------LLAITLFLAKILESLSQRQR 371 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~-------~l~~~l~~~~~~~~l~~~~~ 371 (1335)
+++..+| .|+.++++.+++++..+....--.+=+.+|.-..-... ....-| .++++=.++..++.+..|+.
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444445 77778777777766554433222222333322111110 000111 12222233444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 000713 372 YFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIIL--FHAV 449 (1335)
Q Consensus 372 ~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL--~~~l 449 (1335)
-.|+=+.+.-.+|+|...++..-.....+|++.|.+..|++.+++........|...+-++++..+. +..+
T Consensus 86 -------tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~ 158 (573)
T COG4987 86 -------TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSI 158 (573)
T ss_pred -------HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4567788888999999999998888889999999999999999999888877776655444443333 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-
Q 000713 450 GLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA- 528 (1335)
Q Consensus 450 G~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~- 528 (1335)
+.+.+.++...++++.+...+.+..++..++..+.+..--....+.+.|+..++++|-++.|.+.+++ .|..|.+.
T Consensus 159 ~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~---~e~~~~~~q 235 (573)
T COG4987 159 PLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA---TEASWLKAQ 235 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH---HHHHHHHHH
Confidence 66777777777777778888888888888888888888888899999999999999999999887764 34433332
Q ss_pred --HHHHHHHHhHHHhHHH-HHHHHHHH-HHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 529 --VQLRKAYNGFLFWSSP-VLVSTATF-GACYFLNVPLY-ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVN 603 (1335)
Q Consensus 529 --~~~~~a~~~~~~~~~p-~lv~~~tF-~~~~l~~~~Lt-~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~ 603 (1335)
.+.......++..... .++....+ .++..-.+.++ +..+...+..|..+..-....|.++..+-|+..|.+|+.+
T Consensus 236 ~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~ 315 (573)
T COG4987 236 RKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLND 315 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhh
Confidence 2222222222222111 11111111 11111113333 2222222222333222112333677888999999999999
Q ss_pred HhcCCCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC
Q 000713 604 FLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683 (1335)
Q Consensus 604 fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~ 683 (1335)
.+++++......+..+. .+..++++|++|+|+++ ..++|+|+||++++||++||+|++|||||||++.|.|-++|+
T Consensus 316 i~~q~~e~~~~~~~~~~---~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 316 ILDQKPEVTFPDEQTAT---TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred hccCCcccCCCccccCC---ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 99875533222111111 22279999999999875 357999999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 684 QGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 684 ~G~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+|+|..+| .+++++|.+.+|++|+|||+.++++. .++...+++++.+|.+-++..|+|.+|.+||.
T Consensus 392 ~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~ 471 (573)
T COG4987 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471 (573)
T ss_pred CCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccC
Confidence 99999998 36889999999999999999999874 56778899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
|..||||||||++|||++.+|++++||||||.|||+.|.+++++.+.. ..+|||+|+|||++..++.+|+|++|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gki 550 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCee
Confidence 999999999999999999999999999999999999999999986654 4569999999999999999999999999999
Q ss_pred EEecChHHHHhcchHHHHHHH
Q 000713 830 LRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 830 ~~~g~~~~l~~~~~~~~~l~~ 850 (1335)
+++|+|++++.+++.|.++.+
T Consensus 551 ie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 551 IEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred eecCCHHhhhccccHHHHHhc
Confidence 999999999998888877653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=597.49 Aligned_cols=467 Identities=17% Similarity=0.200 Sum_probs=359.8
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+-..+|++.++.+..-.+.+.+|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.+.++++
T Consensus 1031 ~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~ 1110 (1560)
T PTZ00243 1031 RNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYL 1110 (1560)
T ss_pred HHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999888777888999999999999999998654 455555666666666655544433333332223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFW- 541 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~- 541 (1335)
.+.+...+.+..++.++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+......+......
T Consensus 1111 ~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~ 1190 (1560)
T PTZ00243 1111 YYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777777778888899999999999999999999998888755433333222211111111111111
Q ss_pred -HHHHHHHHHHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cc---
Q 000713 542 -SSPVLVSTATFGACY--FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQS-MN--- 614 (1335)
Q Consensus 542 -~~p~lv~~~tF~~~~--l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~-~~--- 614 (1335)
.....+.++.++++. .....++++.+..++.+...+..|+..+...+..+.++.+|++||.++++..+.++ ..
T Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 111111222222222 22345788888778877788889999999999999999999999999996322110 00
Q ss_pred --------------------c-cccCC----CCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCH
Q 000713 615 --------------------I-RQKGN----IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGK 669 (1335)
Q Consensus 615 --------------------~-~~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGK 669 (1335)
. +..+. ..+.++.|+++|++|+|+++ ..++|+|+||+|++||++||||++||||
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGK 1349 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGK 1349 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCH
Confidence 0 00000 00123569999999999753 3469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHh
Q 000713 670 STLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLE 736 (1335)
Q Consensus 670 STLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~ 736 (1335)
|||+++|+|+++|++|+|.+||. ++||||+|.+|++||||||..+..+++++..++++.|++.+.+.
T Consensus 1350 STLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~ 1429 (1560)
T PTZ00243 1350 STLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVA 1429 (1560)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHh
Confidence 99999999999999999999983 69999999999999999998877788889999999999999999
Q ss_pred hCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcc
Q 000713 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD-ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815 (1335)
Q Consensus 737 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l 815 (1335)
.+|.|.+|.+||+|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+
T Consensus 1430 ~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti 1508 (1560)
T PTZ00243 1430 SESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTV 1508 (1560)
T ss_pred hCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHH
Confidence 9999999999999999999999999999999996 999999999999999999888654 45556789999999999999
Q ss_pred ccCCeEEEEeCCeEEEecChHHHHhc-chHHHHHHHHh
Q 000713 816 PAFDSVLLMSDGEILRAAPYHQLLAS-SKEFQELVSAH 852 (1335)
Q Consensus 816 ~~~D~iivl~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 852 (1335)
..||+|++|++|+|++.|+++||+++ ++.|.++++..
T Consensus 1509 ~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1509 AQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999974 67888887654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=546.81 Aligned_cols=508 Identities=18% Similarity=0.170 Sum_probs=374.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILI-CHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKV 382 (1335)
Q Consensus 304 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ri 382 (1335)
+++ .+++.++++.++.++..++....|.+++.+++...... . ....+.+++++ +..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGLCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 566 78888999999999999999999999988875321110 0 11111111222 22233333344566788889
Q ss_pred HHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 383 RSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 383 R~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
...+...+|+|.++++.....++++|++++.+++|++.+.++...+..+....+.++++++++++.-...+++.++.+++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998887788999999999999999998765554555555555555544443322223333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWET--HFKNAIE----ILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~--~f~~~I~----~~R~~El~~l~~~~~~~a~~ 536 (1335)
.+.+..+..++.++...+..+..++..+...|.++|++++|.++.|+ ...+++. +.|+...+..+. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 240 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI----FIAA 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHH
Confidence 44455556666777778888888999999999999999999999854 3333333 233322222111 1111
Q ss_pred hHHHhHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000713 537 GFLFWSSPVLVSTATFGACYFL---NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1335)
Q Consensus 537 ~~~~~~~p~lv~~~tF~~~~l~---~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~ 613 (1335)
..+.. ++..+.++.+++. .+.++.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++.
T Consensus 241 ~~~~~----~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 241 ENFGQ----LLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11111 1111112212111 2578999999999999999999999999999999999999999999864221100
Q ss_pred c---ccccC----CCCCCcccEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC
Q 000713 614 N---IRQKG----NIENVNRAISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 614 ~---~~~~~----~~~~~~~~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~ 684 (1335)
. .+... ........|+++|++|+|++.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0 00000 0001234699999999997532 2369999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 685 GTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 685 G~i~v~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
|+|.++|. ++||+|+++++++|+++|+ ....++++.+++++.+++.+++..+|.|++|. .
T Consensus 397 G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~ 469 (555)
T TIGR01194 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----T 469 (555)
T ss_pred cEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----c
Confidence 99999883 6899999999999999995 23345667788899999999999999999873 7
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~ 830 (1335)
+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+. ..+++|+|+|||+++.+..||+|++|++|+++
T Consensus 470 ~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 470 ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999998877643 34689999999999999999999999999998
Q ss_pred Ee
Q 000713 831 RA 832 (1335)
Q Consensus 831 ~~ 832 (1335)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=501.89 Aligned_cols=530 Identities=19% Similarity=0.298 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 316 GFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEG-YLLAITLFLAKIL--ESLSQRQRYFRSRLIGLKVRSLLTAAIYR 392 (1335)
Q Consensus 316 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~l~~~l~~~~~~--~~l~~~~~~~~~~r~g~riR~~L~~~Iy~ 392 (1335)
.++..+.-++....|.+.+.+++-+..+..+.+.- +.+++..|+-... ..+..+--.|..-++..-.--.+-..+|+
T Consensus 221 l~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 221 LFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 33444444556677889999998887554333322 2233222221100 01111111111111111122234556777
Q ss_pred HHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000713 393 KQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVG-LATIAALVVITITVLCNTPL 470 (1335)
Q Consensus 393 K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~h~~w~~plqi~lal~lL~~~lG-~a~l~gl~v~vl~~~~~~~~ 470 (1335)
+...||-.-.-+..+||+...|..-...+. +..| ..++--..+.+++|++..+.... |-.+..+..|.+..-+...+
T Consensus 301 Hlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 301 HLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeee
Confidence 777777554444568999888876665554 2222 22332334455555554433333 23333333444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000713 471 AKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFK----NAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVL 546 (1335)
Q Consensus 471 ~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~----~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~l 546 (1335)
...-.|+|++....-.+--..-.+.|-|..+||.|+-|+.-. +.|.+..+.|-+.+....+++...+.++... +
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg--l 457 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG--L 457 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--H
Confidence 666777888777666665566778888999999999987544 4455556666666555555544443332211 2
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcc
Q 000713 547 VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNR 626 (1335)
Q Consensus 547 v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 626 (1335)
.....+.+|....+.+|.++..-.+..+-.|..|++.+......+....+-.+|+.+.+++++...+.....|- ....+
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl-~~~~G 536 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPL-KVTQG 536 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCc-cccCC
Confidence 22233455555667899999888888888899999999999999999999999999999765422221111111 11456
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.|+++|++|.|++ ++|+|+||||++++|+.+|+|||+|+||||+++.+.+..+..+|.|.+||+ |
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 8999999999975 479999999999999999999999999999999999999999999999994 7
Q ss_pred EEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
|.||||..+||.||..||.++++- ..+...++.++.+.++.+-.+|+|.+|.+||||-.||||+||||++||+++.+|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 999999999999999999999874 3445567778889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc-chHHHHHHHH
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS-SKEFQELVSA 851 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 851 (1335)
|++|||.|||||.++.+.| +.++.....|+|.|+|.|+++.+-+||.|++++||+|+|.|+++|+..+ ++.+.++.+.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999999888 4566666789999999999999999999999999999999999999987 7778888765
Q ss_pred h
Q 000713 852 H 852 (1335)
Q Consensus 852 ~ 852 (1335)
+
T Consensus 774 q 774 (790)
T KOG0056|consen 774 Q 774 (790)
T ss_pred H
Confidence 4
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=579.09 Aligned_cols=475 Identities=18% Similarity=0.201 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 375 SRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT 453 (1335)
Q Consensus 375 ~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~ 453 (1335)
..+.+.+.-..+...++++.++.+..-.....+|+|+|.++.|++.+.+... .+..+....+.+++.+++++...++.+
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777788888998888777888999999999999999998654 455556666666666666655545444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
++.+.++++.+.+..+..+..++.++.....+....+..+|.++|+.+||.|++|+.|.++..+.-+...+.........
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333444445556666666677777788888889999999999999999999999999887765442221111111111
Q ss_pred HHHhHHHhH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 000713 534 AYNGFLFWS-SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1335)
Q Consensus 534 a~~~~~~~~-~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~ 612 (1335)
.+..+.... .-.++..+.+. .+.....+++.+-.++++...+..++..+...+..+.++.+|++||.+|++.|+...
T Consensus 1109 ~wl~~~~~~i~~~~~~~~~~l--~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAVTFI--AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 111111100 00111111111 111123455556666666666778888888888899999999999999997643221
Q ss_pred cccc----------------ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHH
Q 000713 613 MNIR----------------QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676 (1335)
Q Consensus 613 ~~~~----------------~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~i 676 (1335)
...+ ..+..-+..+.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 1000 001001134579999999999753 35899999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCC
Q 000713 677 LGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDN 743 (1335)
Q Consensus 677 lG~~~~~~G~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~ 743 (1335)
+|+++ .+|+|.++| +++|+||+|.+|++||||||.....+++++..++++.|++.+.+..+|.|.+
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99997 799999998 3799999999999999999987667788899999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEE
Q 000713 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823 (1335)
Q Consensus 744 t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iiv 823 (1335)
|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+.+ +...+++|+|+|||+++.+..+|+|++
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999988887654 455678999999999999999999999
Q ss_pred EeCCeEEEecChHHHHhcchHHHHHHHHhhh
Q 000713 824 MSDGEILRAAPYHQLLASSKEFQELVSAHKE 854 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~ 854 (1335)
|++|+|++.|+|++++++++.|.+++++..+
T Consensus 1424 L~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 9999999999999999888889988876544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=530.29 Aligned_cols=504 Identities=17% Similarity=0.183 Sum_probs=362.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAG-PLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
+++.+++.+++.++...++.++..++.... |++.+.+++.+.+. ...-+.+++.+++..++. .-..+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVT----LGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 466777888888999899999888888774 67778888765321 111111111111111111 1223344556
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
+.++...+...+|+|.++++.....++.+|+++|.++.|++.+......+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777778888999999999888888899999999999999998876566677788888887777776654445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhc--cHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYA--WETHFKNAI----EILRNVEYKWLSAVQLR 532 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~a--wE~~f~~~I----~~~R~~El~~l~~~~~~ 532 (1335)
++++.+.+...+.++.++..++.++..+++.+.++|.++|++++++.. .++.+.++. ++.++...+.. ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD----TF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH----HH
Confidence 556666677788888888889999999999999999999999998433 223344443 33333332221 11
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000713 533 KAYNGFLFWSSPVLVSTATFGACYFLNVP---LYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1335)
Q Consensus 533 ~a~~~~~~~~~p~lv~~~tF~~~~l~~~~---Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e 609 (1335)
......+ ..++..+.++.+.+.++. .+.+.+.........+..|+..+...+..+.+++++.+||.+++..++
T Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 232 HLSAVNW----SNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111111 111111222222222211 122222222222233678999999999999999999999999986543
Q ss_pred CCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000713 610 LQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v 689 (1335)
.++.. +..+. . ....|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 308 ~~~~~-~~~~~-~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 308 KAEFP-RPQAF-P-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred ccccc-ccccc-C-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 22111 11110 1 1246999999999974 246999999999999999999999999999999999999999999999
Q ss_pred cCe-------------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 690 YGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 690 ~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+|. ++|++|++.++++|++|| +...+++..++.++.+++..+++. +.|. .+|.+||||
T Consensus 383 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgG 453 (547)
T PRK10522 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKG 453 (547)
T ss_pred CCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHH
Confidence 873 799999999999999999 444556666777777766655542 2221 147899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999998887665433 58999999999999999999999999999876
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-54 Score=490.81 Aligned_cols=530 Identities=22% Similarity=0.303 Sum_probs=425.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 297 QPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSR 376 (1335)
Q Consensus 297 ~~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 376 (1335)
......+..-.+++.++..+++..+-.++..++|+.+-+.-|-+-...+ ...-..+.+.....++++.+.+.--.+...
T Consensus 10 ~~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~TLv~Ltvlal~ly~~~glLd~iR~~~l~ 88 (580)
T COG4618 10 PKNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPTLVMLTVLALGLYAFQGLLDAIRSRVLV 88 (580)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888889999999999999999877666655533221 222344555555666777777777778889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 377 LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF------WFHQIWTTSVQLCIALIILFHAVG 450 (1335)
Q Consensus 377 r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~------~~h~~w~~plqi~lal~lL~~~lG 450 (1335)
|+|.++-..|..-||.-+++.....+......+.+ .|.+.+..|.. .+...| .|+-++++ |++.-.+|
T Consensus 89 Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG 162 (580)
T COG4618 89 RIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLG 162 (580)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHH
Confidence 99999999999999999975544433222233443 57788877764 233444 67766554 66677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 451 LATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQ 530 (1335)
Q Consensus 451 ~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~ 530 (1335)
+.+++|.++++.+..+|-.++++ --++-.+..-+|....+-.++|..+|+.+|..+...++-.+....-+.+..+..
T Consensus 163 ~~a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~as 239 (580)
T COG4618 163 LIALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERAS 239 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999988888877777666544 445667778888899999999999999999999998888887777676666655
Q ss_pred HHHHHHhHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000713 531 LRKAYNGFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAP 608 (1335)
Q Consensus 531 ~~~a~~~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~ 608 (1335)
........+.-..-.+ +.++..|+|..+++++|++.++..--+..-.-.|+...-....++..|+.|.+|++++|...
T Consensus 240 d~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~ 319 (580)
T COG4618 240 DRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAEL 319 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5544433322222222 34456778888889999999987776666666899999999999999999999999999763
Q ss_pred CCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000713 609 ELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 609 e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~ 688 (1335)
....... ..|. .+..+.++++++.=|+ .++++++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|.
T Consensus 320 p~~~~~m-~LP~---P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 320 PAAAERM-PLPA---PQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred ccccCCC-CCCC---CCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 3222211 1222 4568999999996544 457999999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEecCCcCCCCCHHHHhc-cCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 689 VYG-------------KTAYVSQTAWIQTGSIRENIL-FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 689 v~g-------------~~ayv~Q~~~i~~~Tv~eNIl-fg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
+|| .+||.||+--+|+|||.|||. |+.+.|.++.-++.+..+.++-+..+|+|++|.||+.|.+||
T Consensus 395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LS 474 (580)
T COG4618 395 LDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLS 474 (580)
T ss_pred ecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCC
Confidence 998 489999999999999999996 777888887778888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
|||||||+||||+|.||.+++||||-|+||.+....+.+.+.....+|.|+|+|||+++.+..+|+|++|+||++...|+
T Consensus 475 gGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~ 554 (580)
T COG4618 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGP 554 (580)
T ss_pred chHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCC
Confidence 99999999999999999999999999999999999998877777788999999999999999999999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
.+|++++
T Consensus 555 r~eVLa~ 561 (580)
T COG4618 555 REEVLAK 561 (580)
T ss_pred HHHHHHH
Confidence 9998753
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=512.84 Aligned_cols=504 Identities=17% Similarity=0.165 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 311 DIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF--KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTA 388 (1335)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~ 388 (1335)
.++...++.++.+++....|++++.+++.+.+.+.. ......+++.+++..++..+ ..|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~----~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA----IKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 566778888889999999999999999988654321 11112222233333333333 344466667777777777
Q ss_pred HHHHHHHcCChh----hhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000713 389 AIYRKQLRLSNA----ARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT-IAALVVITI 462 (1335)
Q Consensus 389 ~Iy~K~L~ls~~----~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~-l~gl~v~vl 462 (1335)
.++++.+.--.. ..++ .+|++++.+++|++.+.+... .+..+...++.++.+++.++..++|.. ++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777663211 1111 479999999999999988754 455666778888888888887777743 444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||.|+-|+.+.++..+.=++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77778888899999999999999999999999999999999999999887777664444344444443333333322221
Q ss_pred HH----HHHHHHHHHHHHHh-c----CcccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000713 543 SP----VLVSTATFGACYFL-N----VPLYASNVFTF----VATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1335)
Q Consensus 543 ~p----~lv~~~tF~~~~l~-~----~~Lt~~~vFt~----lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e 609 (1335)
.. ..+..+..+..++. . +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222222232332 1 56887764432 334667789999999999999999999999999997422
Q ss_pred C-Cc-----ccccc-c---------------CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCC
Q 000713 610 L-QS-----MNIRQ-K---------------GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGS 667 (1335)
Q Consensus 610 ~-~~-----~~~~~-~---------------~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~Gs 667 (1335)
. +. ...+. . .......+.|+++|++++|++ ++++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 1 10 00000 0 000012346999999999964 24799999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhccCCC--------CChHHHHHHHHHhccHHHHhh
Q 000713 668 GKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTGSIRENILFGSP--------MDSHQYQETLERCSLIKDLEL 737 (1335)
Q Consensus 668 GKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~Tv~eNIlfg~~--------~~~~~~~~~~~~~~l~~dl~~ 737 (1335)
|||||+++|+|+++|++|+|.+++ +++|+||+|+++++|++|||.++.. ..+++.+++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999865 6899999999999999999998742 344566788888899877766
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc
Q 000713 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA 817 (1335)
Q Consensus 738 l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~ 817 (1335)
|.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+.+ .|+|+|+|||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 888888876 5789999999999999999999999999999999999999988875543 38999999999999999
Q ss_pred CCeEEEEeC
Q 000713 818 FDSVLLMSD 826 (1335)
Q Consensus 818 ~D~iivl~~ 826 (1335)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=499.46 Aligned_cols=473 Identities=20% Similarity=0.263 Sum_probs=371.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 373 FRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL 451 (1335)
Q Consensus 373 ~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~ 451 (1335)
+.....|++.-..|-..++++.+|-+..-.+...+|.|+|..|.|++.+++..+ .+..+....++++.++.+.-....+
T Consensus 880 ~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~ 959 (1381)
T KOG0054|consen 880 FLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW 959 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 334456777777788888888888877777788999999999999999997654 4555555666666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 452 ATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQL 531 (1335)
Q Consensus 452 a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~ 531 (1335)
..++.+.+.++++.++.+..+-.+..++--...+.-=....+|.++|+-+|+.|+.|+.|.++-...-+.-.+. ..+
T Consensus 960 fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~---~f~ 1036 (1381)
T KOG0054|consen 960 FLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRA---FFL 1036 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHH---HHH
Confidence 66666666666677777776666777766667778888999999999999999999999998876644432221 111
Q ss_pred HHHHHhHHHh----HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 532 RKAYNGFLFW----SSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 532 ~~a~~~~~~~----~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
..+.+-.+.. ..-.++..+++.+....++..+|+.|=-+++.--.+..-+..+-.....+-.-.+|++||.+|.+.
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~ 1116 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDI 1116 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcC
Confidence 1111111111 111122222222222222227788887777766666677777777777788889999999999985
Q ss_pred CCCCccccc--ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 608 PELQSMNIR--QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 608 ~e~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
|+..+...+ +.|..=+.++.|+++|++.+|.++ ..++||||||+|++||++||||++|||||||+++|-++.+|.+|
T Consensus 1117 ~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1117 PSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 433222111 122222367889999999999765 35899999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|.+|| +++.+||+|.+|+||+|.|+.--.++.+++..++++.|+|.+.+..+|.|.++++.|+|.|
T Consensus 1196 ~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1196 EILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred eEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 999998 4699999999999999999998788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
+|-||||-++|||||+++++|++|||+|+++|++|- .+.++.++..-+++|||.+.|+++.+-.+|||+||++|+|+|.
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD-~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETD-ALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHH-HHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeec
Confidence 999999999999999999999999999999999995 5567778888889999999999999999999999999999999
Q ss_pred cChHHHHhcc-hHHHHHHH
Q 000713 833 APYHQLLASS-KEFQELVS 850 (1335)
Q Consensus 833 g~~~~l~~~~-~~~~~l~~ 850 (1335)
|+|++|+++. ..|.+++.
T Consensus 1355 dsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1355 DSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred CChHHHHhCCcchHHHHHH
Confidence 9999999764 44544443
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=464.49 Aligned_cols=361 Identities=24% Similarity=0.342 Sum_probs=295.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHH
Q 000713 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI 1035 (1335)
Q Consensus 956 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~ 1035 (1335)
.....+..++.++++++.++|.+++.+.+.+...+++..++++++|+.++|||.|.+|.|+||+++|...+-..++..+.
T Consensus 188 ~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 188 KRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHH
Confidence 34566677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhc
Q 000713 1036 FAVGATTNACSNLGVLAVVTWQVLFVSI---P-VIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF 1111 (1335)
Q Consensus 1036 ~~~~~~~~~~~~l~vi~~~~~~~~~~~i---p-l~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf 1111 (1335)
..+.+.++.++.++.|++.+|.+.++.. | ++.+..++.+||.+.+|+.+ .+-+...+...|.+++++|||+|
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q----~a~A~a~~vaeE~ls~~rTVRsf 343 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQ----DALARANQVAEEVLSAMRTVRSF 343 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHh
Confidence 9999999999999999999999875433 3 33445556666666666654 45666778899999999999999
Q ss_pred ccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH
Q 000713 1112 EEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVM 1190 (1335)
Q Consensus 1112 ~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~ 1190 (1335)
+.|++=.+++.+.++.-.+-.-....+.--+.-..++.+++....+.+ ...+...|.+++|.+--.+.|...+...+.+
T Consensus 344 a~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ 423 (716)
T KOG0058|consen 344 AAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSG 423 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 999866666655555433322211111122222334555544433322 2333446789999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEE
Q 000713 1191 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIG 1268 (1335)
Q Consensus 1191 ~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY--~~~~~~VLk~is~~I~~GekVG 1268 (1335)
+...++++-+.+.|.||++||++.+|.-+.. +. ..|. .-+|.|+|+||+|.| ||+. +||||+||+|+|||.||
T Consensus 424 ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~-~~p~-~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vA 498 (716)
T KOG0058|consen 424 LSSFYSELMKGVGASERVFELMDRKPRIPLT--GT-LAPD-HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVA 498 (716)
T ss_pred HHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Cc-cccc-cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEE
Confidence 9999999999999999999999876654432 21 2233 578999999999999 5555 49999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1269 IVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+|||+||||||++++|.|+|||++|+|++||+||+. |+++++|.|||+||+|||+||
T Consensus 499 LVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 499 LVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 999999999999999999999999999999999996 568999999999999999998
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=428.63 Aligned_cols=459 Identities=22% Similarity=0.319 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 385 LLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAALVVITIT 463 (1335)
Q Consensus 385 ~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~ 463 (1335)
.+....|+..++||-.-..+..+|.+---|..-..-++.+.++ +..+-...+++.+..+++|+..||...+..++++++
T Consensus 16 ~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~l 95 (497)
T COG5265 16 VLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVIL 95 (497)
T ss_pred HHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 4455567777777765444445555443333333345554443 333444568999999999999998655554444444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 000713 464 VLCNTP-LAKLQHKFQTKLMVAQDE-RLKACSEAFVNMKVLKLYAWETHFKNAIEI----LRNVEYKWLSAVQLRKAYNG 537 (1335)
Q Consensus 464 ~~~~~~-~~~~~~~~q~~~m~~~D~-R~~~~sEiL~~ik~IKl~awE~~f~~~I~~----~R~~El~~l~~~~~~~a~~~ 537 (1335)
..+-.+ ....-..+++ .|+..|. --....+.|-+-.++|.|+=|+.+..+..+ .++.+++......++.....
T Consensus 96 Y~~ftv~~s~wr~~~rr-~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~ 174 (497)
T COG5265 96 YLLFTVIVSDWRTDFRR-LMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQT 174 (497)
T ss_pred HHHhheeehhhhHHHHH-hhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 443333 3333334444 4544454 445677889999999999999988777654 33344443333333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 000713 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ 617 (1335)
Q Consensus 538 ~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~ 617 (1335)
.++... +....+.+..-+..+.+|.+...-.-++...+..|++.+......+-|++...++..+-+..+-...+...-
T Consensus 175 ~I~~~~--l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda 252 (497)
T COG5265 175 AIFSTG--LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDA 252 (497)
T ss_pred HHHHHH--HHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCC
Confidence 332211 222233344445568899999999999999999999999999999999999999999888754322221111
Q ss_pred cCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----
Q 000713 618 KGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----- 692 (1335)
Q Consensus 618 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----- 692 (1335)
++-.....+.+.++|++|.|++ .+++|+++||++++|+.++|+||+|+||||+++.|.+++++.+|.|.++|+
T Consensus 253 ~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v 330 (497)
T COG5265 253 PPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV 330 (497)
T ss_pred ccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh
Confidence 1111013457999999999975 468999999999999999999999999999999999999999999999995
Q ss_pred --------EEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 --------TAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 --------~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
||.|||+..+||.|+..||.+|++. .++....+.++.++.+.++.+|+|.+|.+||+|-.||||+||||++
T Consensus 331 tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvai 410 (497)
T COG5265 331 TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAI 410 (497)
T ss_pred HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHH
Confidence 6999999999999999999999874 4556677888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcch
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~ 843 (1335)
||+++.+|+|++|||.|||||.|+.+.|-. .++...+|+|.+++.|+++.+-.||+|+||+||+|+|.|+++||+..++
T Consensus 411 ar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g 489 (497)
T COG5265 411 ARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489 (497)
T ss_pred HHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCC
Confidence 999999999999999999999999988855 4455668999999999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 000713 844 EFQELV 849 (1335)
Q Consensus 844 ~~~~l~ 849 (1335)
.+.++.
T Consensus 490 ~ya~mw 495 (497)
T COG5265 490 LYAEMW 495 (497)
T ss_pred hHHHHh
Confidence 887764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=488.91 Aligned_cols=190 Identities=23% Similarity=0.309 Sum_probs=154.6
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC----CCCCcEEEEcCe------------EEEEecCCcC-CCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV----PHTQGTIQVYGK------------TAYVSQTAWI-QTG 705 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~----~~~~G~i~v~g~------------~ayv~Q~~~i-~~~ 705 (1335)
+++|+|+|+++++||+++|+|||||||||||++|+|.. +|++|+|.++|. ++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999986 468999999873 7999998755 467
Q ss_pred CHHHHhccCCC----------CChHHHH-----HHHHHhccHHHHhhCCCCCCccccC-CCCCCCHHHHHHHHHHHHHcc
Q 000713 706 SIRENILFGSP----------MDSHQYQ-----ETLERCSLIKDLELLPYGDNTEIGE-RGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 706 Tv~eNIlfg~~----------~~~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQkqRv~LARAl~~ 769 (1335)
||+||+.|+.. ..++.+. .+++..+| .+--+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 1122211 12222222 2223456654 466899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCC-cc-ccCCeEEEEeCCeEEEecChHHHH
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVD-FL-PAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~-~l-~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+. .+ ..+|+|++|++|+++..|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999987766554 4899999999974 44 458999999999999999998874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=453.57 Aligned_cols=200 Identities=27% Similarity=0.416 Sum_probs=162.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC--CCcEEEEcCe-----------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYGK----------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~--~~G~i~v~g~----------- 692 (1335)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 46999999999963 4799999999999999999999999999999999999996 8999999872
Q ss_pred ---EEEEecCCcCC-CCCHHHHhccCCCC------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 ---TAYVSQTAWIQ-TGSIRENILFGSPM------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ---~ayv~Q~~~i~-~~Tv~eNIlfg~~~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++.++ +.|++||+.++... +.+...+.+ .+-++.+... .....+..+||||||||++
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQLKLD--INPATPVGNLGLGQQQLVE 153 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 79999998665 56999999986432 111111111 1112222211 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++.+|+++||||||++||+..+..+.+.+.+...+|+|+|++|||++++.. ||+|++|++|++++.|+.
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 9999999999999999999999999999998766655568999999999999864 899999999999877653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=454.43 Aligned_cols=198 Identities=25% Similarity=0.367 Sum_probs=163.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 46899999999963 4699999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCC-CCCHHHHhccCCCC----------ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 KTAYVSQTAWIQ-TGSIRENILFGSPM----------DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ~~ayv~Q~~~i~-~~Tv~eNIlfg~~~----------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++ +.|++||+.++... +.. +..+.++.+++ . ...+.+..+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---------~--~~~~~~~~~LSgG 149 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL---------K--VDLDEKVANLSIS 149 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC---------C--CCcccchhhCCHH
Confidence 279999998665 56999999875320 111 11122222222 1 1234567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
|||||+||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|+++..|++
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 999999999999999999999999999999999999877665556899999999999986 5899999999999887765
Q ss_pred HH
Q 000713 836 HQ 837 (1335)
Q Consensus 836 ~~ 837 (1335)
++
T Consensus 230 ~~ 231 (510)
T PRK09700 230 SD 231 (510)
T ss_pred hh
Confidence 54
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=461.07 Aligned_cols=207 Identities=22% Similarity=0.346 Sum_probs=167.7
Q ss_pred cccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 625 NRAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
+..|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 35799999999996422 24799999999999999999999999999999999999999999998754
Q ss_pred ---------------eEEEEecCC--cC-CCCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCcc
Q 000713 692 ---------------KTAYVSQTA--WI-QTGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTE 745 (1335)
Q Consensus 692 ---------------~~ayv~Q~~--~i-~~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ 745 (1335)
++|||+|+| .+ ...||+||+.++.. .+.. +..++++..++. .. ...
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------~~-~~~ 161 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP-------EA-QTI 161 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-------Ch-hhH
Confidence 379999998 34 45799999987532 1221 222233333321 00 123
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLL 823 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iiv 823 (1335)
..+++.+|||||||||+||||++.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++. .||+|++
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999998866655444 899999999999876 5899999
Q ss_pred EeCCeEEEecChHHHH
Q 000713 824 MSDGEILRAAPYHQLL 839 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~ 839 (1335)
|++|++++.|+++++.
T Consensus 242 l~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 242 MYQGEAVETGSVEQIF 257 (623)
T ss_pred eeCCeecccCCHHHhh
Confidence 9999999999887764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=451.54 Aligned_cols=205 Identities=22% Similarity=0.385 Sum_probs=164.0
Q ss_pred ccEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC--------
Q 000713 626 RAISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG-------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g-------- 691 (1335)
..++++|++++|++. ..+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 369999999999632 124799999999999999999999999999999999999986 799998865
Q ss_pred ---------eEEEEecCCc--C-CCCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 692 ---------KTAYVSQTAW--I-QTGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 692 ---------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
+++|++|++. + ...|++||+.++. ..+. ++.+++++.+++.+.. ....++..
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPH 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCc
Confidence 3799999974 3 3469999986421 1111 1223334444332100 11245678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEI 829 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i 829 (1335)
+|||||||||+||||++.+|+++||||||++||+..++.+.+.+.+... .|+|+|+||||++.+. .||+|++|++|++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999886665444 3899999999999986 4899999999999
Q ss_pred EEecChHHH
Q 000713 830 LRAAPYHQL 838 (1335)
Q Consensus 830 ~~~g~~~~l 838 (1335)
++.|+++++
T Consensus 236 ~~~g~~~~~ 244 (529)
T PRK15134 236 VEQNRAATL 244 (529)
T ss_pred EEeCCHHHH
Confidence 998877655
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=430.79 Aligned_cols=207 Identities=28% Similarity=0.464 Sum_probs=168.5
Q ss_pred ccEEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC----CcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT----QGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~----~G~i~v~g--------- 691 (1335)
..++++|++..|...++ .++++||||+|.+||.+||+|++||||||+.++|+|++++. +|+|.++|
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 37999999999976533 25899999999999999999999999999999999999987 89999887
Q ss_pred --------eEEEEecCCcC---CCCCHHHHhcc----CCCC-ChHHHH---HHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 --------KTAYVSQTAWI---QTGSIRENILF----GSPM-DSHQYQ---ETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 --------~~ayv~Q~~~i---~~~Tv~eNIlf----g~~~-~~~~~~---~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
++||+||+|+- +-.||.+.|.= .... .++..+ +.++..++ |+.... +..+++
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPhe 154 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQ 154 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCcc
Confidence 37999999852 33588777642 2222 122222 23333333 222211 568999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
|||||||||.||+||..+|+++|+||||+|||+.++.+|.+.+.+.. ..|.++|+||||+..+.+ ||+|+||++|+++
T Consensus 155 LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999998776554 469999999999999875 8999999999999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
|.|+.++++++
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=426.88 Aligned_cols=263 Identities=21% Similarity=0.323 Sum_probs=220.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEEEecC
Q 000713 560 VPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEE 639 (1335)
Q Consensus 560 ~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 639 (1335)
++++|+++|+++++|+.++.|+..+|..... .+|+.+|+..+|.+...+... .+.++.|+++|++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKED---FNHANVFEIRNFNFWYMN 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCC---CCcCceEEEEeeEEEecC
Confidence 5689999999999999999999988865443 579999998776543221111 114568999999999964
Q ss_pred CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC---------------eEEEEecC
Q 000713 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG---------------KTAYVSQT 699 (1335)
Q Consensus 640 ~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g---------------~~ayv~Q~ 699 (1335)
. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| +++|+||+
T Consensus 93 ~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 R-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred C-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 2 3579999999999999999999999999999999999996 5799998765 47999999
Q ss_pred CcCCCCCHHHHhccCCCCC----hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 700 AWIQTGSIRENILFGSPMD----SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 700 ~~i~~~Tv~eNIlfg~~~~----~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
||++++|++|||.|+..++ ++ .++++++.|++.+++ ++.+++++.+||||||||++||||++++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999864322 22 256677777775544 35678999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+|+||||||+|||+++.+++.+ ++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 245 ~IlLLDEPts~LD~~~~~~i~~-~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKIEE-LILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999988655 55555668999999999999877 899999999999999999998754
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=445.11 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=163.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~ 703 (1335)
..|+++|++++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ++||++|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 47999999999962 25799999999999999999999999999999999999999999999864 699999999876
Q ss_pred C-CCHHHHhccCCC-CC---------------h-H-------HHHHHHHHh----------ccHHHHhhCCCCCCccccC
Q 000713 704 T-GSIRENILFGSP-MD---------------S-H-------QYQETLERC----------SLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 704 ~-~Tv~eNIlfg~~-~~---------------~-~-------~~~~~~~~~----------~l~~dl~~l~~gd~t~ig~ 748 (1335)
+ .|++||+.++.. +. . . .+.+..+.+ ...+.++.+... ....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccC
Confidence 4 599999987521 00 0 0 000000000 011112222221 1356
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDG 827 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G 827 (1335)
+..+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.+ . +.|+|+||||++++.. ||+|++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~-~--~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD-Y--PGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 7789999999999999999999999999999999999999988865443 2 3599999999999875 7999999999
Q ss_pred eEE-EecChHHHHh
Q 000713 828 EIL-RAAPYHQLLA 840 (1335)
Q Consensus 828 ~i~-~~g~~~~l~~ 840 (1335)
+++ ..|+++++.+
T Consensus 237 ~i~~~~g~~~~~~~ 250 (556)
T PRK11819 237 RGIPWEGNYSSWLE 250 (556)
T ss_pred EEEEecCCHHHHHH
Confidence 986 7888887653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=384.05 Aligned_cols=202 Identities=32% Similarity=0.480 Sum_probs=175.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.|+++|++++|++ ..+|+|||++|++||.++|+|||||||||||+||.|+.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999974 57999999999999999999999999999999999999999999999992
Q ss_pred EEEEecCCcCC-CCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+|+|+|+..+| ..|+.||+..+. ...+ ++..+.++..+|.+..+ ..+.+|||||||||+|
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHHHHHHHH
Confidence 68999998876 679999999863 1222 22333444555544433 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||||+.+|+++|+|||||||||+...++.+-+.+....|.|.|+|||++.|+.. +|||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999998777778889999999999999987 6999999999999999999998654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=442.51 Aligned_cols=207 Identities=19% Similarity=0.315 Sum_probs=161.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC-
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ- 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~- 703 (1335)
+|+++|++++|++ +++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +++|++|++.++
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 77 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE 77 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC
Confidence 3789999999963 4799999999999999999999999999999999999999999999986 689999997654
Q ss_pred CCCHHHHhccCCC-CC-------------------hHHHHHHHH----------HhccHHHHhhCCCCCCccccCCCCCC
Q 000713 704 TGSIRENILFGSP-MD-------------------SHQYQETLE----------RCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~-~~-------------------~~~~~~~~~----------~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
+.|++||+.++.. .. ...+.+..+ .....+-++.+...+ ........+|
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~L 156 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE-EQHYGLMSEV 156 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh-hHhcCchhhc
Confidence 5699999987531 00 000000000 000111122222111 0112456799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE-EE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI-LR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i-~~ 831 (1335)
||||||||+||||++.+|+++||||||++||+.+++.+.+.+. ..|+|||+||||++++.. ||+|++|++|++ ++
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~ 233 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999998887553 258999999999999865 899999999999 47
Q ss_pred ecChHHHHh
Q 000713 832 AAPYHQLLA 840 (1335)
Q Consensus 832 ~g~~~~l~~ 840 (1335)
.|+++++.+
T Consensus 234 ~g~~~~~~~ 242 (530)
T PRK15064 234 PGNYDEYMT 242 (530)
T ss_pred cCCHHHHHH
Confidence 899988753
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=443.34 Aligned_cols=200 Identities=27% Similarity=0.437 Sum_probs=158.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC--CCcEEEEcC--------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYG-------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~--~~G~i~v~g-------------- 691 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 799999987
Q ss_pred eEEEEecCCcCC-CCCHHHHhccCCCCC--h--HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 KTAYVSQTAWIQ-TGSIRENILFGSPMD--S--HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 ~~ayv~Q~~~i~-~~Tv~eNIlfg~~~~--~--~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++|++|++.++ +.|++||+.++.... . ...++..+. ..+-++.+...+. .......+|||||||||+||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR--AKNLLRELQLDAD-NVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH--HHHHHHHcCCCCC-cccCchhhCCHHHHHHHHHHHH
Confidence 279999998665 569999998864321 0 001111111 1111222211110 0123467899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..|
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 999999999999999999999999998766655668999999999999865 8999999999997654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=443.21 Aligned_cols=199 Identities=23% Similarity=0.340 Sum_probs=161.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCC-------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPM-------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++|++|++.++ +.|++||+.++... +....++.+ .+-++.+...+ ....+..+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA-----DKLLARLNLRF--SSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHH-----HHHHHHcCCCC--CccCchhhCCHHHHHHHHHH
Confidence 79999998654 56999999986432 111111111 11122222211 23456779999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|+.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999998766655556899999999999986 4899999999999876543
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=441.10 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=168.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
...|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 9 PPLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred CceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 346999999999963 4699999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcCC-CCCHHHHhccCCCCCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSPMDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 -~~ayv~Q~~~i~-~~Tv~eNIlfg~~~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++|++|++.++ +.|++||+.++..... ++.++.++..++. .....+..+|||||||||+||||
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHH
Confidence 278999998765 5699999998753221 2223333333332 12345677999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
++.+|+++||||||++||+..++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|+++++
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999877665556899999999999886 5899999999999988877664
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=444.53 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=159.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEc---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVY--------------- 690 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~--------------- 690 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 47999999999999999999999999999999999997 7999999885
Q ss_pred --------C-----------------------eEEEEecC-CcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhc
Q 000713 691 --------G-----------------------KTAYVSQT-AWIQ-TGSIRENILFGSP---MDS----HQYQETLERCS 730 (1335)
Q Consensus 691 --------g-----------------------~~ayv~Q~-~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~ 730 (1335)
| .++|++|+ +.++ ..|++||+.++.. .+. ++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 27999997 4444 5699999987421 211 12333444444
Q ss_pred cHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEc
Q 000713 731 LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVT 809 (1335)
Q Consensus 731 l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvT 809 (1335)
+.+. ..++..+|||||||||+||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|||+||
T Consensus 158 l~~~-----------~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHR-----------ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 4322 2356778999999999999999999999999999999999999999887666544 489999999
Q ss_pred cCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 810 HQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 810 H~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++++. .||+|++|++|+++..|+++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHH
Confidence 9999986 48999999999998766543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=440.32 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=165.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 5899999999963 46999999999999999999999999999999999999999999998762 6
Q ss_pred EEEecCCcC---------CCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAWI---------QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~i---------~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|++.. +..|++||+.++.. +.++.++.++..++.+. .+.+..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHH
Confidence 899998642 14689999876521 23344555555555322 2346678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
||++.+|+++||||||++||+..++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999998776655568999999999998865 899999999999988876654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=440.69 Aligned_cols=207 Identities=27% Similarity=0.374 Sum_probs=165.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~ 703 (1335)
..++++|++++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.+++ +++|++|+|+++
T Consensus 3 ~~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 36899999999962 24799999999999999999999999999999999999999999999975 699999999876
Q ss_pred -CCCHHHHhccCCCC------------------Ch---------HHHHHHHHHhccH-------HHHhhCCCCCCccccC
Q 000713 704 -TGSIRENILFGSPM------------------DS---------HQYQETLERCSLI-------KDLELLPYGDNTEIGE 748 (1335)
Q Consensus 704 -~~Tv~eNIlfg~~~------------------~~---------~~~~~~~~~~~l~-------~dl~~l~~gd~t~ig~ 748 (1335)
+.|++||+.++... +. .++.+.++.++.. +-++.+... ....
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~ 157 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDA 157 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccC
Confidence 56999999875310 01 1122233333321 112222221 1356
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDG 827 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G 827 (1335)
+..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.+ . +.|+|+||||++++.. ||+|++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 7789999999999999999999999999999999999999988875443 2 3699999999999875 7999999999
Q ss_pred eEE-EecChHHHHh
Q 000713 828 EIL-RAAPYHQLLA 840 (1335)
Q Consensus 828 ~i~-~~g~~~~l~~ 840 (1335)
+++ ..|+++++.+
T Consensus 235 ~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 235 RGIPWEGNYSSWLE 248 (552)
T ss_pred EEEEecCCHHHHHH
Confidence 976 6798888754
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=438.58 Aligned_cols=362 Identities=19% Similarity=0.254 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
.+.+++++.++..++.+++...+...+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..+
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~ 282 (711)
T TIGR00958 203 AIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVL 282 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++++..+++...+.+.+.+..+++.+-.....+...+++.|+++|+.|||+|+.|+++
T Consensus 283 l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~ 362 (711)
T TIGR00958 283 LRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGE 362 (711)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 99999999999999999999876655444444444444444444444444456667789999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHS---FAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQN 1194 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~---~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~ 1194 (1335)
.+++.+..|+..+..... .....|....+..+..+++....... ...|.+++|.+...+.|...+...+..+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~l--v~~g~it~G~lva~~~~~~~l~~~l~~l~~~ 440 (711)
T TIGR00958 363 ASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL--VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYV 440 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888776654433 22334443333333333322222222 2357899999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCC
Q 000713 1195 QCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1195 ~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
+.++.+...+.||+.+|.+.++|.+.. . ....+|..|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||+|
T Consensus 441 ~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~S 516 (711)
T TIGR00958 441 YSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPS 516 (711)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCC
Confidence 999999999999999999876554321 1 11224567899999999999643 347999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||||+++|.|+++|++|+|.|||+|++. ++++++|||||.||+||||||
T Consensus 517 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred CCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 9999999999999999999999999999985 458999999999999999998
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=439.58 Aligned_cols=196 Identities=25% Similarity=0.375 Sum_probs=158.6
Q ss_pred EEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------EEE
Q 000713 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------TAY 695 (1335)
Q Consensus 630 i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------~ay 695 (1335)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3688999963 46999999999999999999999999999999999999999999999872 799
Q ss_pred EecCCcCC-CCCHHHHhccCCC-C-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 696 VSQTAWIQ-TGSIRENILFGSP-M-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++.++ +.|++||+.++.. . +.....+.. .+-++.+.. ......++.+|||||||||+||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDELDI--DIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHH-----HHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99998654 5799999987632 1 111111111 111222211 12234567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|+.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 999999999999999999999998876665556899999999999886 5899999999999876654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=437.88 Aligned_cols=192 Identities=27% Similarity=0.420 Sum_probs=160.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 6899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCC------CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSP------MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++|++.++. .|++||+.++.. .+.. +..+.++.+++ . .....++.+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~--~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV---------D--IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC---------C--CCcCCchhhCCHHHHHHH
Confidence 799999987654 699999998632 1111 12222232222 1 123456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEe
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA 832 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~ 832 (1335)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999988776655568999999999998864 899999999999753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=447.03 Aligned_cols=202 Identities=26% Similarity=0.390 Sum_probs=170.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------E
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------T 693 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ 693 (1335)
..|+++|+++.|+++ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 469999999999632 357999999999999999999999999999999999999999999999883 7
Q ss_pred EEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
|||||++.++ ..|++||+.|+.. ... ++.++.++..+|.+ ..+++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHH
Confidence 9999998765 5699999987532 111 12233344433321 234677899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|++.+|+++||||||||||+..++++++.+.+. .+|+|+|++||+++.+.. +|+|++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999876655 469999999999999864 89999999999999999998864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=422.09 Aligned_cols=359 Identities=18% Similarity=0.180 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHH
Q 000713 965 IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNA 1044 (1335)
Q Consensus 965 l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~ 1044 (1335)
+.++..++.++..+.....+.+...+++.++++++++.|.+||+++++|+++||+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHH
Q 000713 1045 CSNLGVLAVVTWQVLFVSIPVIFLAI-RLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 1123 (1335)
Q Consensus 1045 ~~~l~vi~~~~~~~~~~~ipl~~~~~-~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~ 1123 (1335)
++.++++++.+|.+.++++..++++. ....++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 99999999999998876654443333 33344444455555555567788999999999999999999999999999999
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000713 1124 LIDTNASPFFHSFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 1202 (1335)
Q Consensus 1124 ~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~-~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~ 1202 (1335)
..+...+........+.+...-..++..+....+. +.......|.++.|.+...+.|+..+...+..+...+.++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776655444444333333333333222221 22222335778999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHH
Q 000713 1203 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRG 1282 (1335)
Q Consensus 1203 ~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~ 1282 (1335)
.|.+|+.++.+.|+|.+... ...+.+.+|..|.|+|+||+|+|+++. +||+|+||+|+|||||||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998766543211 111122345678899999999997554 5999999999999999999999999999999
Q ss_pred HHhhccCCCCCeEEECCeecCC-----cCCCceeecccccccccHHhh
Q 000713 1283 ALFRLIEPARGKILVDGKLAEY-----DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1283 aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+|.|+++|++|+|.|||+|++. ++++++|||||+||+||||||
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 9999999999999999999984 568999999999999999998
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=415.91 Aligned_cols=397 Identities=22% Similarity=0.290 Sum_probs=323.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccC----CCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 926 ASLSHLTFVIGQILQNSWLAANVEN----PNVSTLRL-IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLF 1000 (1335)
Q Consensus 926 ~~~~~~~~~~~~~~~~~wl~w~~~~----~~~~~~~~-~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il 1000 (1335)
+++..++.+++.+++.+...+-.|. ...++..+ ...+++.++...++.++|.+.+...+-+....+-.+.+++++
T Consensus 159 v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll 238 (709)
T COG2274 159 VLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLL 238 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344455556666666665532221 22233333 344556678888999999999999999999999999999999
Q ss_pred cCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000713 1001 RAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080 (1335)
Q Consensus 1001 ~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~ts 1080 (1335)
+.|++||.+.++|.+++|++ |++.|...+...+...+..++.++..+++|.+.+|+++++.+..++++..+.-...+.-
T Consensus 239 ~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l 317 (709)
T COG2274 239 RLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317 (709)
T ss_pred cCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 88899999999888888888888899999999999988765544444443333333333
Q ss_pred HHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC 1160 (1335)
Q Consensus 1081 rel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~ 1160 (1335)
|+..|-.....+-..++..|++.|+.||++.+.|++|..+..++.++..+..+...-...|...-..++..+..+.+..+
T Consensus 318 ~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~ 397 (709)
T COG2274 318 RRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWF 397 (709)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455667789999999999999999999999999999999999988888888887777777665544433332
Q ss_pred -HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEE
Q 000713 1161 -MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDI 1239 (1335)
Q Consensus 1161 -~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f 1239 (1335)
+.....+.++.|.+=...+.+-.+++.+..++..+.++...-.+.||+.+..+.|+|.+. +..+...|+-+|+|+|
T Consensus 398 G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~ 474 (709)
T COG2274 398 GAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEF 474 (709)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEE
Confidence 233336788999888888899999999999999999999999999999999999888642 2225566788999999
Q ss_pred EEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeec
Q 000713 1240 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKR 1313 (1335)
Q Consensus 1240 ~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Q 1313 (1335)
+||+|+|+++.|+||+|+|++|+|||+||||||+|||||||++.|.|+|+|++|+|.+||+|++. |+++++|+|
T Consensus 475 ~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 475 ENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred EEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 99999999998999999999999999999999999999999999999999999999999999985 678999999
Q ss_pred ccccccccHHhhH
Q 000713 1314 EGSLFGQLVKEYW 1326 (1335)
Q Consensus 1314 ep~LFsGTIrE~~ 1326 (1335)
|++||+||||||.
T Consensus 555 ~~~Lf~gSI~eNi 567 (709)
T COG2274 555 DPFLFSGSIRENI 567 (709)
T ss_pred cchhhcCcHHHHH
Confidence 9999999999973
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=424.48 Aligned_cols=411 Identities=19% Similarity=0.188 Sum_probs=306.1
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhhc-ccc---CCCcch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 906 GLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAA-NVE---NPNVST-LRLIVVYLLIGFVSTLFLMSRSLSS 980 (1335)
Q Consensus 906 ~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~w-~~~---~~~~~~-~~~~~vy~~l~~~~~~~~~~~~~~~ 980 (1335)
+++.++.|++....... .++++.++..+..++..+++.. -+. +...+. ..+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIV--NIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677765443322 2233333444444445555442 111 111111 1223344455566777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 981 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLF 1060 (1335)
Q Consensus 981 ~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~ 1060 (1335)
...+.+...+++.++++++++.|++||++.++|++++|++ |.+.+-..+...+...+..++.++..++++++.+|++.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888887777766666667777777777788888888776
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHH
Q 000713 1061 VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140 (1335)
Q Consensus 1061 ~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~ 1140 (1335)
+++..++++..+...+.+..++..+-.....+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544444444444444445555555556677888999999999999999999999999988887776666554433332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCC
Q 000713 1141 ---WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSE 1217 (1335)
Q Consensus 1141 ---Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E 1217 (1335)
++...+..++.++++..+...+ ..|.++.|.+-.+.+|...+...+..+...+.++.....++||+.++.+.|+|
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv--~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLV--MRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 2222233333332222222222 36789999999999999999999999999999999999999999999988777
Q ss_pred CCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEE
Q 000713 1218 APEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297 (1335)
Q Consensus 1218 ~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~I 1297 (1335)
.+.. ..+.+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+++|++|+|+|
T Consensus 458 ~~~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 458 FINK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 5421 1112235567899999999999644 56999999999999999999999999999999999999999999999
Q ss_pred CCeecCC------cCCCceeecccccccccHHhh
Q 000713 1298 DGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1298 DGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||+|++. |+.+++|||||.||+||||||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 9999975 568999999999999999998
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=424.91 Aligned_cols=206 Identities=25% Similarity=0.363 Sum_probs=155.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQT 704 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~ 704 (1335)
+|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +++|++|++....
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~ 77 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALP 77 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 3789999999964 5799999999999999999999999999999999999999999999987 4799999754444
Q ss_pred CCHHHHhccCCCC---------------ChHHHHHHHH---H-------hccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 705 GSIRENILFGSPM---------------DSHQYQETLE---R-------CSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 705 ~Tv~eNIlfg~~~---------------~~~~~~~~~~---~-------~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.|+.+++.-+... +...+..... . .....-++.+... ......+..+|||||||
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFS-NEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-chhhcCchhhcCHHHHH
Confidence 5766665421100 0000100000 0 0011112222221 01234567789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~ 837 (1335)
||+|||||+.+||++||||||++||+.+..++.+.+.+ . +.|+|+||||++++.. ||+|++|++|++. ..|+|++
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999999999888765433 2 5799999999999875 7999999999996 5788877
Q ss_pred HH
Q 000713 838 LL 839 (1335)
Q Consensus 838 l~ 839 (1335)
..
T Consensus 234 ~~ 235 (638)
T PRK10636 234 FE 235 (638)
T ss_pred HH
Confidence 64
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=421.60 Aligned_cols=368 Identities=17% Similarity=0.169 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+...++++.++..++.+++.++....+.+....++.++++++++.|++||+..++|+++||++.| +.+...+...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 34445556667778888999999999999999999999999999999999999999999999998 57888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++.+..++++..+..++.+..+...+-.....+...+++.|+++|+.|||+|+.|+++
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 354 (710)
T TIGR03796 275 ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDF 354 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHH
Confidence 88888888889999999999887766555555555555555444444445556678899999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~-~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..++..+..+.....+.|+....+++..+..++.. +.+.....|.++.|.+-.++++...+...+..+...+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~ 434 (710)
T TIGR03796 355 FSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGG 434 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777776666555556655555554443322222 22222336789999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccC--C-CCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVED--N-RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~--~-~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
++.....+.||+.++++.|+|.+..... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||||||||+|
T Consensus 435 ~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~s 514 (710)
T TIGR03796 435 TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGS 514 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCC
Confidence 9999999999999999887765422100 0 011114557899999999999876678999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|||||||+++|.|+++|++|+|.|||+|++. ++++++|||||.||+||||||-
T Consensus 515 GsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi 573 (710)
T TIGR03796 515 GSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL 573 (710)
T ss_pred CCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHh
Confidence 9999999999999999999999999999975 5689999999999999999983
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=418.05 Aligned_cols=359 Identities=21% Similarity=0.285 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+..+++++.++..++.+++.+.....+.+...+++.++++++++.|++||+..++|++++|++ |++.++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~ 256 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTT 256 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 344556666777888889999999999999999999999999999999999999999999997 8999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhccc
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLA----IRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEE 1113 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~----~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~ 1113 (1335)
+...+.+++.+++++..+|++.++.+.+++++ ++.++.+.+..++..+ ..+...+++.|+++|+.|||+|+.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~~ik~~~~ 332 (686)
T TIGR03797 257 LLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLE----LSGKISGLTVQLINGISKLRVAGA 332 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHccHHHHHHhcc
Confidence 77777777888888888998876555443333 3344444444444443 455689999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1114 EDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI 1192 (1335)
Q Consensus 1114 e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v 1192 (1335)
|+++.+++.+..++..+..+.....+.|.....+.+..+..++... .......|.++.|.+-.+.++...+...+..+.
T Consensus 333 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~ 412 (686)
T TIGR03797 333 ENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLS 412 (686)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888777777777666555554433332222 222223678899988888889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcC
Q 000713 1193 QNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGR 1272 (1335)
Q Consensus 1193 ~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGR 1272 (1335)
..+.++.....+.||+.++++.|+|.+. +..+ ..+..|.|+|+||+|+|+++.++||+|+||+|+|||||||||+
T Consensus 413 ~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~ 487 (686)
T TIGR03797 413 NTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGP 487 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECC
Confidence 9999999999999999999987766431 1111 1234689999999999987667899999999999999999999
Q ss_pred CCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1273 TGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1273 TGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||||||||+++|.|+++|++|+|.|||+|++. |+++++|||||.||+||||||-
T Consensus 488 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 547 (686)
T TIGR03797 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI 547 (686)
T ss_pred CCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHH
Confidence 99999999999999999999999999999986 5689999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=410.24 Aligned_cols=361 Identities=23% Similarity=0.346 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHH
Q 000713 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIF 1036 (1335)
Q Consensus 957 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~ 1036 (1335)
.+...++++.++..++.++..+.....+.+....++.++++++++.|++|||.+++|.+++|+++|++.++..+......
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~ 132 (567)
T COG1132 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVL 132 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHH
Confidence 34555556666677777777777788889999999999999999999999999999999999999999999999988666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH
Q 000713 1037 AVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR 1116 (1335)
Q Consensus 1037 ~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~ 1116 (1335)
+....+.+++.+++++..+|.+.++++...+++......+.+..+...+....+.+.+.+++.|+++|..+||+|+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~ 212 (567)
T COG1132 133 VFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDR 212 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHH
Confidence 66678888899999999999888776665555555556666556777788888889999999999999999999999997
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1117 FFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSAT---VISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQ 1193 (1335)
Q Consensus 1117 f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~---~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~ 1193 (1335)
..+++.+..+...+...........+..-.+++..+ .+...+... ...+.++.|.+...+.|...+...+..+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 290 (567)
T COG1132 213 ELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL--VLSGSLTVGALAAFILYLLRLLTPILQLGE 290 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 766666665555444333222222222222222222 222222222 224568899999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000713 1194 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1194 ~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
.+..++....|.||+.++.+.|++... ... +.++..|+|+|+||+|+|+++ ++||+|+||+|+|||||||||||
T Consensus 291 ~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~s 364 (567)
T COG1132 291 VVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPS 364 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCC
Confidence 999999999999999999987554221 111 145677999999999999864 46999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||||+++|+|++||++|+|.|||+||+. |+++++|||||.||+|||+||
T Consensus 365 GsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422 (567)
T ss_pred CCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHH
Confidence 9999999999999999999999999999986 578999999999999999997
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=424.16 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=156.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--EEEEecCCcC-C
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TAYVSQTAWI-Q 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--~ayv~Q~~~i-~ 703 (1335)
.|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 5899999999964 47999999999999999999999999999999999999999999999874 6899997643 3
Q ss_pred CCCHHHHhccCCC-------------------CChH---HHHHH---HHH-------hccHHHHhhCCCCCCccccCCCC
Q 000713 704 TGSIRENILFGSP-------------------MDSH---QYQET---LER-------CSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~-------------------~~~~---~~~~~---~~~-------~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
.+++.+++..+.. ...+ .+... ++. .....-++.+... ......
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 4677777642210 0000 00000 000 0011112222221 135677
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
+|||||||||+|||||+.+|+++||||||++||+.+.+++.+.+.. . +.|||+||||.+++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~-~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT-F--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh-C--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999988765543 2 3699999999999875 7999999999997
Q ss_pred E-ecChHHHHh
Q 000713 831 R-AAPYHQLLA 840 (1335)
Q Consensus 831 ~-~g~~~~l~~ 840 (1335)
. .|+|++...
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 4 688887653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=410.01 Aligned_cols=357 Identities=19% Similarity=0.299 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
++++.++..++.+++.+.....+.+...+++.+++++++++|++||+..+.|+++||+++|++.++..+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566677777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 1121 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~ 1121 (1335)
+.+++.++++++.+|++.++.+..+++...+...+.+..+...+......+...+++.|+++|+.+||+|+.|+++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 230 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERM 230 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHH
Confidence 98888888898999887654332222222222222333333344444467788999999999999999999999999998
Q ss_pred HHHHhhccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1122 LDLIDTNASPFFHSFAANEWL-IQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200 (1335)
Q Consensus 1122 ~~~ld~~~~~~~~~~~~~~Wl-~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~ 1200 (1335)
.+..++..+..+.....+.+. ..-..++..++..++.+.......|.++.|.+...+.|...+...++.+...+.++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 231 GEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776555544333222221 1222333322211111111112367889999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHH
Q 000713 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1280 (1335)
Q Consensus 1201 ~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTL 1280 (1335)
...|.||+.++.+.+++++. .. ..++..|+|+|+||+++|+++ +++|+|+||+|+|||||||||+||||||||
T Consensus 311 ~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTL 383 (592)
T PRK10790 311 AVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTL 383 (592)
T ss_pred HHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999876554321 11 123456889999999999754 569999999999999999999999999999
Q ss_pred HHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1281 RGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1281 i~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+++|.|+++|++|+|.+||.|++. ++.+++|||||.||+||||||
T Consensus 384 l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 384 ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 999999999999999999999985 578999999999999999998
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=406.68 Aligned_cols=362 Identities=15% Similarity=0.132 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
++.+++++.++..++.+++.+.....+.+....++.++++++++.|++||+..++|+++||+++|++.++..+...+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~ 144 (588)
T PRK11174 65 PFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQM 144 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555666777788888888899999999999999999999999999999999999999999999999999888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.++++++.+|++.++++.++++...+...+.+..++..+-.....+...+++.|+++|+.+||+|++|+++
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 224 (588)
T PRK11174 145 ALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAE 224 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHH
Confidence 88888888889999999998876555444444444445555555555555566788899999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHH---------HHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGF---------IGMALSYGLSLNSS 1187 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~---------~Glalsy~l~l~~~ 1187 (1335)
.+++.+..++..+......-...+...-..++..+..+++ +++.... .|.++.|. +-+++.++..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~p 303 (588)
T PRK11174 225 TESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQP 303 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHH
Confidence 9999888887766655443333333333333333322221 1111111 13344442 22233566677788
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEE
Q 000713 1188 LVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKI 1267 (1335)
Q Consensus 1188 l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekV 1267 (1335)
+..+...+.++.....|.+|+.++.+.|+|.+.. +..+. .-+..++|+|+||++.|.++ ++||+|+||+|+||||+
T Consensus 304 l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~v 379 (588)
T PRK11174 304 LRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRI 379 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEE
Confidence 8888999999999999999999999876553211 11111 11245689999999988665 56999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1268 GIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1268 GIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+||||||||+++|.|++ |++|+|.|||+|++. ++.+++|||||+||+||||||
T Consensus 380 aIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 380 ALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 999999999999999999999 999999999999986 458999999999999999998
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=366.28 Aligned_cols=204 Identities=30% Similarity=0.419 Sum_probs=173.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
+|+++|+++.|.+ +.+++|+||+|++||+.+++|||||||||+|++|.++++|++|+|.++| ++
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 4899999999973 6799999999999999999999999999999999999999999999998 37
Q ss_pred EEEecCCcC-CCCCHHHHhccCC---CCChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGS---PMDSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~---~~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
|||-|+.-+ ++.||.|||.+-. .+++++. ++.++..+|.+ .....+.+.+|||||+|||.+||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p---------~~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP---------SEYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCH---------HHHhhcCchhcCcchhhHHHHHH
Confidence 999998766 5789999998643 2344433 33444444432 11234678899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||+.+|+|+|+||||+||||-++.++-+.+..... -|+|+|+||||+++. +.+|||.+|++|+|++.++|++++.+.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999887775543 499999999999885 568999999999999999999998765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=369.34 Aligned_cols=190 Identities=35% Similarity=0.441 Sum_probs=162.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------eEEEEec
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVSQ 698 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------~~ayv~Q 698 (1335)
.+++++++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999975 5799999999999999999999999999999999999999999999988 4799999
Q ss_pred CCcCC-CCCHHHHhccCCCCC-------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQ-TGSIRENILFGSPMD-------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~-~~Tv~eNIlfg~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++-++ ..||+||+.|+.+.. .++.++.++.++|...- +..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHHHHhcC
Confidence 98664 569999999986642 12344455555543322 356789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeC--CeEE
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSD--GEIL 830 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~--G~i~ 830 (1335)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888887654 4899999999999865 5799999998 5553
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=399.74 Aligned_cols=363 Identities=15% Similarity=0.142 Sum_probs=287.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+.+.+++++++..++.+++.+.....+.+...+++.++++++++.|.+||+..++|+++||+++|++.++..+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556667777788888888888999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++++..+++...+...+.+..+...+-.....+-..+++.|+++|+.+||+|+.|+++
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 205 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQ 205 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHH
Confidence 88888888888888888998765444333222222222222223333333345566889999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..++..+..+.......|...-.+++..+..++. .+.......|.++.|.+-..+.|+..+...+..+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~ 285 (529)
T TIGR02857 206 AAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYH 285 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877776665555445555555555444433222 122222226778999888888999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
++.....+.+|+.++.+.|++.+. . ++...+..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+||||
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsG 360 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAG 360 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCC
Confidence 999999999999999975543221 1 11112345789999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+++|.|+++|++|+|.+||+|++. ++.+++|+|||.+|+||||||
T Consensus 361 KSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 9999999999999999999999999975 457999999999999999998
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=401.55 Aligned_cols=361 Identities=17% Similarity=0.144 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
+.+++++..++.++..+.....+.+....++.++++++++.|++||+..++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIF-LAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 1120 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~-~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~ 1120 (1335)
+.+++.++++++.+|.+.++++.+++ ++..+..++.+..+...+......+-+.+.+.|+++|+.+||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 99999999999999998875533222 22223344445555555555667788889999999999999999999999999
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000713 1121 NLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYG-LSLNSSLVMSIQNQCTLA 1199 (1335)
Q Consensus 1121 ~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~-l~l~~~l~~~v~~~~~le 1199 (1335)
+.+..++..+..+.......+...-.+++..+..+++..+......+.++.|..-.++.|. +.....+..+...+.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766655555555555555554433322222222124566666655555554 333456666677788888
Q ss_pred HHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000713 1200 NYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1279 (1335)
Q Consensus 1200 ~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKST 1279 (1335)
....|.||+.++.+.|+|.+.. +..++ -+..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999876653211 11111 1456889999999999765557999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1280 LRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1280 Li~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|+++|.|+++|++|+|.|||+|++. ++.+++|||||.||+|||+||.
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 434 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNL 434 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHh
Confidence 9999999999999999999999986 4579999999999999999983
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=402.08 Aligned_cols=363 Identities=19% Similarity=0.266 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+...++++.++..++.+++.+.....+.+....++..+++++++.|.++|+..+.|++++|+++|++.++..+...+..+
T Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 135 (571)
T TIGR02203 56 VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVL 135 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.++..++++++.+|++.++++.++++..++...+.+..++..+-.....+...+++.|+++|+.+||+++.++++
T Consensus 136 i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 215 (571)
T TIGR02203 136 VRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE 215 (571)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHH
Confidence 99999999999999999999988887777777777777777777777777778889999999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..+...+..........|+..-.+++..+...+..+ .......|.+++|.+..+++|...+...+..+...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 295 (571)
T TIGR02203 216 TRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877777666666666666555433332222 2223336789999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
++.+...+.+|+.++.+.++|.+.. ..+.+ |..|.|+|+||+++|.++.+++|+|+||+|++||||+|||+||||
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsG 370 (571)
T TIGR02203 296 PMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSG 370 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCC
Confidence 9999999999999999876654321 11111 345789999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+++|.|+++|++|+|.+||+|++. ++.++++||||.+|+||||||
T Consensus 371 KSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 371 KSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred HHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 9999999999999999999999999985 457999999999999999998
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=410.11 Aligned_cols=362 Identities=19% Similarity=0.199 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHH
Q 000713 960 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVG 1039 (1335)
Q Consensus 960 ~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~ 1039 (1335)
.+++++.++..++.+++.++....+.+...+++.++++++++.|++| +..++|.+++|+ +|++.+...+...+...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~ 268 (694)
T TIGR03375 191 IGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALI 268 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHH
Confidence 34444556677888889999999999999999999999999999998 789999999999 7999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHH
Q 000713 1040 ATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 1119 (1335)
Q Consensus 1040 ~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~ 1119 (1335)
.++.++..++++++.+|++.++.+..++++..+..++.+..++..+-.....+...+++.|+++|+.+||+|+.|+++.+
T Consensus 269 ~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 348 (694)
T TIGR03375 269 DLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQR 348 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHH
Confidence 77777788888888898887655444444433434444444444444445677888999999999999999999999999
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1120 KNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 1198 (1335)
Q Consensus 1120 ~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~-~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~l 1198 (1335)
++.+..++..+..+.....+.+...-.+++..+...+ ..+.+.....|.++.|.+-.+++|...+...+..+...+.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~ 428 (694)
T TIGR03375 349 RWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRY 428 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888776666555444444333333333222111 111122223578999999899999999999999999999999
Q ss_pred HHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHH
Q 000713 1199 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1278 (1335)
Q Consensus 1199 e~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKS 1278 (1335)
.....++||+.++.+.|+|.+.. ..+.+..+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||
T Consensus 429 ~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKS 505 (694)
T TIGR03375 429 QQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKS 505 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHH
Confidence 99999999999999887764321 111112245689999999999976666799999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1279 TLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1279 TLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||+++|.|+|+|++|+|.|||+|++. ++.+++|||||.||+|||+||.
T Consensus 506 TLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi 559 (694)
T TIGR03375 506 TLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI 559 (694)
T ss_pred HHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence 99999999999999999999999986 5689999999999999999983
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=374.53 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=175.5
Q ss_pred cEEEEeeEEEecCC--CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEES--SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~--~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
+|+++|+++.|... ....+|+|+||+|++||+.+|+|.||+|||||+++|.++..|++|+|.++|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999753 124689999999999999999999999999999999999999999999999
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhccCCCCC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 ---KTAYVSQTAWIQT-GSIRENILFGSPMD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ---~~ayv~Q~~~i~~-~Tv~eNIlfg~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+||+++|++.+++ .||.|||.|+.+.. .+..+++.+.+.+ ....| ..+.++.+|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLel------VgL~d--k~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL------VGLSD--KADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHH------cCChh--hhccCchhcCcchhhHHHH
Confidence 3799999998875 79999999975432 2233334333221 11111 2356788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||+.+|+|+|.|||||||||++.+.|.+.+.+.. .-|-|+++|||+++.++. ||||.||++|+++++|+..++..+
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 999999999999999999999999999998776543 349999999999999975 899999999999999999999865
Q ss_pred c
Q 000713 842 S 842 (1335)
Q Consensus 842 ~ 842 (1335)
+
T Consensus 233 P 233 (339)
T COG1135 233 P 233 (339)
T ss_pred c
Confidence 4
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=381.21 Aligned_cols=223 Identities=27% Similarity=0.422 Sum_probs=201.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.|+++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| ++
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999643 3469999999999999999999999999999999999998 799999988 37
Q ss_pred EEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
+|+||+|.++++|++||+....+.+.++..+.++.+++.+.+..+|.+.++.+++.|.+||||||||++||||++.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964444566778888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHh
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 852 (1335)
+||||||++||+.+.+.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++++....|..++...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999999888765554 346899999999999988899999999999999999999998777777776544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=367.62 Aligned_cols=201 Identities=34% Similarity=0.569 Sum_probs=172.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------eEEE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------KTAY 695 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------~~ay 695 (1335)
..|+++|++++|++. ++|+||||+|++|++++|+||||||||||+++|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 469999999999742 699999999999999999999999999999999999999999999876 4999
Q ss_pred EecCC---cCCCCCHHHHhccCCCCC-----------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 696 VSQTA---WIQTGSIRENILFGSPMD-----------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 696 v~Q~~---~i~~~Tv~eNIlfg~~~~-----------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
|||.. |-|+.||+|-+..|.... .+..+++++..++.+ +. .++..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~~----------~r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-LR----------DRQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-hh----------CCcccccCcHHHHHH
Confidence 99964 668999999999874322 245566666666542 21 245567999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
-|||||+++||+++|||||+|+|+.++..+++.+.+...+|+||++||||++.+. .+|+|+.++ +++...|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 9999999999999999999999999999999877666667999999999999876 589999985 57888999999875
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=399.86 Aligned_cols=360 Identities=16% Similarity=0.200 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
+++++++..++.+++.+.....+.+....++.++++++++.|.++|+....|.+++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777778877788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 1121 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~ 1121 (1335)
+.+++.++++.+.+|++.++++..+++.+++..+..+..++..+-.....+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998766555444444444444444444444445567788899999999999999999999999999
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1122 LDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200 (1335)
Q Consensus 1122 ~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~-~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~ 1200 (1335)
.+..+...+........+.|.....++++.+...++..+ ......|.++.|.+.+++++..++...++.+...+.++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888777766666666666666655433332222 2223357899999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHH
Q 000713 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1280 (1335)
Q Consensus 1201 ~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTL 1280 (1335)
...+.+|+.++.+.|+|.+.. . ....|..|.|+|+||+++|+++.+++|+|+||+|+||||+||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~---~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEG---K--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCC---C--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 999999999999876653311 1 11224567899999999998766779999999999999999999999999999
Q ss_pred HHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1281 RGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1281 i~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+++|.|+++|++|+|.+||+|++. ++.++++||||+||+||||||.
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni 437 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNI 437 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHH
Confidence 999999999999999999999975 5689999999999999999983
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=431.07 Aligned_cols=197 Identities=22% Similarity=0.353 Sum_probs=156.2
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcCe----------EEEEecCCcC-CCCCHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYGK----------TAYVSQTAWI-QTGSIR 708 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g~----------~ayv~Q~~~i-~~~Tv~ 708 (1335)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|. ++||+|++.+ .+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 999999873 7999998754 567999
Q ss_pred HHhccCCCCC--------------hHH---------HHHHHHHhc---------cHHHHhhC--CCCCCccccC-CCCCC
Q 000713 709 ENILFGSPMD--------------SHQ---------YQETLERCS---------LIKDLELL--PYGDNTEIGE-RGVNL 753 (1335)
Q Consensus 709 eNIlfg~~~~--------------~~~---------~~~~~~~~~---------l~~dl~~l--~~gd~t~ig~-~g~~L 753 (1335)
||+.|+.... +++ .+..++++. .+.-++.+ .+..+|.+|+ ....|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 9998852110 000 000111111 01122222 3334667765 45689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCC-c-cccCCeEEEEeCCeEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVD-F-LPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~-~-l~~~D~iivl~~G~i~ 830 (1335)
||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+. . ...+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999987666544 5899999999974 3 4568999999999999
Q ss_pred EecChHHHH
Q 000713 831 RAAPYHQLL 839 (1335)
Q Consensus 831 ~~g~~~~l~ 839 (1335)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999998875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=369.89 Aligned_cols=201 Identities=30% Similarity=0.437 Sum_probs=174.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|++|+|++ +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| ++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 6899999999999999999999999999999999999999999999999 47
Q ss_pred EEEecCCcC-CCCCHHHHhccCCCC-----------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSPM-----------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
||+||++.. +..||+|-+.+|+.. |.+..+++++.+++.+.. .+...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999754 567999999998531 222344456666654432 234568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
.|||||+++|+++|||||||+||...+.++++.+.+.. .+|+|+|+|+||++.. ..||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999887765 5699999999999985 578999999999999999999987
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 53
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=404.07 Aligned_cols=364 Identities=22% Similarity=0.264 Sum_probs=292.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+..+++++.++..++.+++.++....+.+....++.++++++++.|++||+..++|.+++|+ +|++.+...+...+..+
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~ 259 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTV 259 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 34455666667788888999999999999999999999999999999999999999999999 69999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.++..++++++.+|++.++++..++++..+..+..+..|...+-.....+...+++.|+++|+.|||+|+.|+++
T Consensus 260 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 339 (694)
T TIGR01846 260 VLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQF 339 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHH
Confidence 77777777778888889998876654444433333333322223333333345567889999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..++..+..+.....+.+.....+++..+..++..+ .+.....|.++.|.+-...++...+...+..+...+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~ 419 (694)
T TIGR01846 340 QNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQ 419 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887777766666666665555554443332222 2222235789999998999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
+++....+.||+.++.+.|+|.+.. +..+.+ +..|.|+|+||+++|+++.+++|+|+||+|+|||++||||++|||
T Consensus 420 ~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsG 495 (694)
T TIGR01846 420 DFQQTGIALERLGDILNSPTEPRSA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSG 495 (694)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCC
Confidence 9999999999999999887764321 111111 235889999999999877677999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||||+++|.|+++|++|+|.|||+|++. ++.+++|+|||.||+|||+||.
T Consensus 496 KSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi 551 (694)
T TIGR01846 496 KSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551 (694)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH
Confidence 9999999999999999999999999975 5679999999999999999983
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=394.74 Aligned_cols=366 Identities=19% Similarity=0.240 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
++.+++++.++..++.+++.+.....+.+....++..+++++++.|.++|+....|++++|+++|++.++......+..+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~ 139 (576)
T TIGR02204 60 YFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMA 139 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667777888888888999999999999999999999999999999999999999999999998888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++++..+++.+.+...+.+..+...+-....+....+++.|+++|+.+||+|+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~ 219 (576)
T TIGR02204 140 LRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAE 219 (576)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHH
Confidence 89999999999999999998876554444444444444444445555555667777899999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..+...+..........|+..-...+..+..++. .+.......|.++.|.+.....|...+...+..+...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~ 299 (576)
T TIGR02204 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWG 299 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887776665555555555544444433222222 112222336788999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCC-CCccccceEEeeCCcEEEEEcCCCC
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIVGRTGS 1275 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~-~~VLk~is~~I~~GekVGIVGRTGS 1275 (1335)
++.+...+.+|+.++.+.++|.+... ...+..+|..+.|+|+||+++|+++. +++|+|+||+|+|||+++|||+|||
T Consensus 300 ~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGs 377 (576)
T TIGR02204 300 ELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGA 377 (576)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCC
Confidence 99999999999999988765532111 11122345567899999999997543 5799999999999999999999999
Q ss_pred cHHHHHHHHhhccCCCCCeEEECCeecCCc------CCCceeecccccccccHHhh
Q 000713 1276 GKTTLRGALFRLIEPARGKILVDGKLAEYD------EPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1276 GKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~------~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||+++|.|+++|++|+|.+||+|++.. +.++++||||.+|+||||||
T Consensus 378 GKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 378 GKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred CHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 999999999999999999999999999753 57999999999999999998
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=366.47 Aligned_cols=208 Identities=26% Similarity=0.427 Sum_probs=165.3
Q ss_pred cccEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC-------
Q 000713 625 NRAISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g------- 691 (1335)
+..++++|++..+... +...++++|||+|++||.+|+||++|||||-..++++|+++. -+|+|.++|
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 3568999999888633 245689999999999999999999999999999999999976 478999887
Q ss_pred ----------eEEEEecCCcC-CC--CCHHHHhc----cCCCCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 692 ----------KTAYVSQTAWI-QT--GSIRENIL----FGSPMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i-~~--~Tv~eNIl----fg~~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
+|+.++|+|.- .| -||...|. ........ +..+.++..++. . -...+...+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~-------~-p~~rl~~yP 155 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIP-------E-PEKRLDAYP 155 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-------c-hhhhhhhCC
Confidence 58999999953 22 37665553 33333222 222333333332 1 123456788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
++|||||||||.||.||..+||++|.||||.|||..++.+|.+.+.+.. ..|..++++|||+..+.. +|+|.||.+|+
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 9999999999999999999999999999999999999999998666543 349999999999999976 79999999999
Q ss_pred EEEecChHHHHh
Q 000713 829 ILRAAPYHQLLA 840 (1335)
Q Consensus 829 i~~~g~~~~l~~ 840 (1335)
++|.|+.++++.
T Consensus 236 ivE~~~t~~lF~ 247 (534)
T COG4172 236 IVETGTTETLFA 247 (534)
T ss_pred EeecCcHHHHhh
Confidence 999998777754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=395.78 Aligned_cols=206 Identities=27% Similarity=0.463 Sum_probs=163.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC-
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ- 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~- 703 (1335)
.|.++|++++|++ +++++|+|+++.+|+++||||+||+||||||++|.|++.|++|+|...+ +++|++|++...
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 5899999999953 6899999999999999999999999999999999999999999999987 799999999876
Q ss_pred CCCHHHHhccCCCCCh---HHHHHHHH------------------H-------hccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 704 TGSIRENILFGSPMDS---HQYQETLE------------------R-------CSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~~~~---~~~~~~~~------------------~-------~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
..||.|.+.-+...-. .++++... . ......+..+...+ . .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCH
Confidence 4599999987642110 11111110 0 01112222232222 2 456678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-Eec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g 833 (1335)
|||.||+|||||..+||+|||||||++||..+..++-+.+. ..+| |+|+||||.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999998865443 2356 99999999999987 6999999999884 578
Q ss_pred ChHHHHhc
Q 000713 834 PYHQLLAS 841 (1335)
Q Consensus 834 ~~~~l~~~ 841 (1335)
+|+...+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 88876543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=378.33 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=176.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ +|+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999742 2999999999999999999999999999999999999999999999984 799
Q ss_pred EecCCcC-CCCCHHHHhccCCCCC-------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWI-QTGSIRENILFGSPMD-------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i-~~~Tv~eNIlfg~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|+|+.-+ +++||+|||.|+.... +++.+++.+..++.+.++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999765 5779999999987653 234556666666665554 46678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.++|+++|||||+|+||++.+..+..++.+... -|.|+|+||||..++. .+|+|++|++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999998887776443 3899999999997764 58999999999999999999998654
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=368.41 Aligned_cols=218 Identities=36% Similarity=0.682 Sum_probs=195.1
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCC
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~ 703 (1335)
....|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++|++|+++++
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc
Confidence 45679999999952 4699999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000713 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saL 783 (1335)
+.|++||+.++......++.+.++++++.+.+..++.+.++.+++++.+||||||||++||||++.+|+++||||||++|
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 89999999987555445566777888888888888888888888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 784 DAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
|+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+.+++.+...++.
T Consensus 191 D~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 999999888766554456899999999999988899999999999999999999876544443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=408.61 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=146.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~ 705 (1335)
..|+++|++++|++ +++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+++|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 46999999999963 469999999999999999999999999999999999741 13 2224567888887543334
Q ss_pred CHHHHhccC-------------------------------------CCCCh--HHHHHHHHHhccH----------HHHh
Q 000713 706 SIRENILFG-------------------------------------SPMDS--HQYQETLERCSLI----------KDLE 736 (1335)
Q Consensus 706 Tv~eNIlfg-------------------------------------~~~~~--~~~~~~~~~~~l~----------~dl~ 736 (1335)
|+.|.++-. .+.+. +++.++.+...+. .-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 553332110 00000 1222222222110 1112
Q ss_pred hCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc
Q 000713 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP 816 (1335)
Q Consensus 737 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~ 816 (1335)
.+... .........+||||||||++||||++.+|+++||||||++||+....++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~-~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFT-PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCC-hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 22211 0112345678999999999999999999999999999999999999998875543 2 689999999999987
Q ss_pred c-CCeEEEEeCCeEE-EecChHHHH
Q 000713 817 A-FDSVLLMSDGEIL-RAAPYHQLL 839 (1335)
Q Consensus 817 ~-~D~iivl~~G~i~-~~g~~~~l~ 839 (1335)
. ||+|++|++|++. ..|+|++..
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHH
Confidence 6 8999999999996 678887754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=346.82 Aligned_cols=207 Identities=24% Similarity=0.397 Sum_probs=178.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC-----cEEEEcCe-------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-----GTIQVYGK------- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-----G~i~v~g~------- 692 (1335)
...++++|+++.|++ +.+|+|||++|++++++|++||+||||||||+++..+.+..+ |+|.++|+
T Consensus 5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred cceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence 357999999999974 579999999999999999999999999999999999988765 89999883
Q ss_pred --------EEEEecCCcCCCCCHHHHhccCCCCCh-------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 693 --------TAYVSQTAWIQTGSIRENILFGSPMDS-------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 693 --------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~-------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
+|.|+|.|..|+.||.|||.+|..... +..++.++..+|.+.... .+.+.+..|||||
T Consensus 82 d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQ 154 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQ 154 (253)
T ss_pred CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhH
Confidence 699999999999999999999854321 234555666677655431 2456778899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
+||++||||+.-+|+|+|||||||||||.+..+|- +++..++++-|+|+|||+++.... .|+...+.+|+++|.|+.+
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIE-eLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE-ELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHH-HHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999998884 566666788999999999998776 5999999999999999999
Q ss_pred HHHhcc
Q 000713 837 QLLASS 842 (1335)
Q Consensus 837 ~l~~~~ 842 (1335)
++..+.
T Consensus 234 ~iF~~P 239 (253)
T COG1117 234 KIFTNP 239 (253)
T ss_pred hhhcCc
Confidence 998654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=349.72 Aligned_cols=205 Identities=31% Similarity=0.465 Sum_probs=173.4
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
+..|++++++++|++ +.+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 457999999999964 6799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEecCCcCC-CCCHHHHhccCC----CCChHHHHH----HHHHhccHHH-HhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 ---KTAYVSQTAWIQ-TGSIRENILFGS----PMDSHQYQE----TLERCSLIKD-LELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ---~~ayv~Q~~~i~-~~Tv~eNIlfg~----~~~~~~~~~----~~~~~~l~~d-l~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|+++|+.-+| +.||.||+.|.. ...++..++ -++.++|..+ .+. .+.+|||||+
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHH
Confidence 379999998887 559999999953 233333332 3456666655 443 4568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc--CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~--~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
+|++||||+..||+|+++|||||||||.+...+- ++++.+. -|.|+++||||++.+.. ||+|+++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999987665 4554332 38999999999998765 699999999999999999
Q ss_pred HHHHhcchH
Q 000713 836 HQLLASSKE 844 (1335)
Q Consensus 836 ~~l~~~~~~ 844 (1335)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999876543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=362.99 Aligned_cols=202 Identities=30% Similarity=0.430 Sum_probs=173.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+|.++|+++.|+. .++++|||++|+.||++|+.|||||||||||++|+|+..|++|+|.++|+
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788999999964 57899999999999999999999999999999999999999999999985
Q ss_pred EEEEecCCcC-CCCCHHHHhccCCCCC---------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 TAYVSQTAWI-QTGSIRENILFGSPMD---------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ~ayv~Q~~~i-~~~Tv~eNIlfg~~~~---------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
||||+|+.-+ +.+||.|||.||.+.. +.+.++.++.|.|..- + ..++.+|||||||||+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~l------a-----~ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL------A-----DRYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccch------h-----hcCchhcChHHHHHHH
Confidence 7999999766 4789999999997433 2234444555554322 1 2467899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||+..+|++|||||||+|||++.++.+-..+.+...+ |.|+++||||.++. +.+|+|++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999988777665555 89999999999886 5689999999999999999999976
Q ss_pred cc
Q 000713 841 SS 842 (1335)
Q Consensus 841 ~~ 842 (1335)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 54
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=380.15 Aligned_cols=203 Identities=30% Similarity=0.433 Sum_probs=176.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TA 694 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~a 694 (1335)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+ ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4799999999997 368999999999999999999999999999999999999999999999995 69
Q ss_pred EEecCCcCC-CCCHHHHhccCCCCC-----hH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPMD-----SH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~~-----~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|+|+.-+| +.||.|||.||.... ++ +..++++..+|.+ .-.+++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHHHH
Confidence 999997665 789999999997622 11 3444444444433 223678899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCc-cccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||..+|+++|||||+||||.+.++++-.++.+... .|.|.|+||||-++ +..+|||++|++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999888776543 49999999999987 4668999999999999999999998765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=353.13 Aligned_cols=194 Identities=31% Similarity=0.441 Sum_probs=161.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
++++|+++.|.... ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996532 246899999999999999999999999999999999999999999999982
Q ss_pred ---EEEEecCCc-CCCCCHHHHhccCCCC----C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 ---TAYVSQTAW-IQTGSIRENILFGSPM----D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 ---~ayv~Q~~~-i~~~Tv~eNIlfg~~~----~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+|||+|+.. +++.|++|||.++..+ . .++.++.++..++.+.. ...++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~----------~~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL----------LKKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhh----------ccCCchhcCHHHHHHH
Confidence 799999975 5688999999853221 1 22233333433443222 1256789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~ 831 (1335)
|||||++.+|+++|.||||++||.++++.+++.+.+... .|+|+|+||||.+....|||++.|+||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999987776654 4899999999999999999999999999543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=361.53 Aligned_cols=219 Identities=31% Similarity=0.488 Sum_probs=190.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
|+++|++++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999642 257999999999999999999999999999999999999999999999872 79
Q ss_pred EEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++++++.|++||+.++.. .......+.++..++.+.++.+|.+.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999988653 233334445566677777888888877788889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHH
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l 848 (1335)
+||||||++||+.+.+.+.+.+.+. .+|+|+|++||+++++..||++++|++|++++.|+++++.++.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999998876554 4589999999999998889999999999999999999988765555443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=354.44 Aligned_cols=201 Identities=54% Similarity=0.944 Sum_probs=182.7
Q ss_pred EEEEeeEEEecCCCC--CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCC
Q 000713 628 ISIKSASFSWEESSS--KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~--~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~ 705 (1335)
++++|++++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999965321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~ 785 (1335)
|++||+.++...+.++..+..+.+++.+.+..+|.|.++.+++++.+||||||||++||||++.+|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999866666667777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 786 HTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 786 ~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
+..+.+++.++.. ..+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999998866543 345799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=384.31 Aligned_cols=397 Identities=12% Similarity=0.159 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000713 925 IASLSHLTFVIGQILQNSWLAANVEN--PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRA 1002 (1335)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~wl~w~~~~--~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~a 1002 (1335)
+++++.++..+..+...+++.+-.+. +......+..++++++++..+..++..........+....+..++++++++.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 23 LLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444455555566666666522111 1111122233344444444333333443334444555556667999999999
Q ss_pred CcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000713 1003 PMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKE 1082 (1335)
Q Consensus 1003 pmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsre 1082 (1335)
|.++|+..+.|++++|+++|++.+.......+..++..++..++.+++++..+|++.++++.++++++.+.+++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887778777777777778888888899988877776666667777777777777
Q ss_pred HHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000713 1083 LMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCM 1161 (1335)
Q Consensus 1083 l~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~ 1161 (1335)
.++-.....+...+++.|+++|+.+||+|+.++++.+++.+..+...+..........|...-.+++..+..+++ .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788999999999999999999999999999888888877766655444434444333333332222222 2222
Q ss_pred HhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEE
Q 000713 1162 VLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICD 1241 (1335)
Q Consensus 1162 v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~n 1241 (1335)
.....|.++.|.+-.++.|...+...+..+...+.++.....+.+|+.+..+.+++.+.. ...++.. +..|.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~~-~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDLG-RVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCcC-CCCCeEEEEE
Confidence 223367899999999999999999999999999999999999999999998754442211 1111111 2357899999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeeccc
Q 000713 1242 LQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREG 1315 (1335)
Q Consensus 1242 v~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep 1315 (1335)
|+++|.++ +++|+|+||+|+|||+|||||++|||||||+++|.|+++|++|+|.|||+|++. ++.+++|||||
T Consensus 340 vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 340 VSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 99999643 569999999999999999999999999999999999999999999999999986 46899999999
Q ss_pred ccccccHHhh
Q 000713 1316 SLFGQLVKEY 1325 (1335)
Q Consensus 1316 ~LFsGTIrE~ 1325 (1335)
.||+||||||
T Consensus 419 ~lf~~Ti~~N 428 (588)
T PRK13657 419 GLFNRSIEDN 428 (588)
T ss_pred ccccccHHHH
Confidence 9999999998
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=384.42 Aligned_cols=363 Identities=17% Similarity=0.177 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
++.+++++.++..++.+++.+.....+.+...+++.++++++++.|++||+..++|++++|+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555556666667777777778899999999999999999999999999999999999999999997777777777
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH
Q 000713 1038 VGATTNACSNLGVL-AVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR 1116 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi-~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~ 1116 (1335)
+...+..++.++++ +..+|++.++++..+++...+.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 77766666555555 47788776655444444444444444444444444455678899999999999999999999999
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1117 FFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 1195 (1335)
Q Consensus 1117 f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~-~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~ 1195 (1335)
+.+++.+..+...+..+.......+...-......+.. +...+.......|.++.|.+-..+.|...+...+..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877666655443333332222222221111 11111222233678899999888999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCC
Q 000713 1196 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1275 (1335)
Q Consensus 1196 ~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGS 1275 (1335)
.++.....|.+|+.++.+.|+|.+.. ...++ +..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+|||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCC
Confidence 99999999999999999866543211 11111 23578999999999986556799999999999999999999999
Q ss_pred cHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1276 GKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1276 GKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||+++|.|+++|++|+|.+||+|++. ++.+++++|||.||+|||+||
T Consensus 353 GKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred CHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 99999999999999999999999999875 467999999999999999998
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=358.59 Aligned_cols=217 Identities=31% Similarity=0.529 Sum_probs=189.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~a 694 (1335)
++++|+++.|++..++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335799999999999999999999999999999999999999999999987 279
Q ss_pred EEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++.+++.|++||+.++... ..++..+.++.+++.+.+..+|.|.++..+.++.+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988888999999987543 23344556666777777788888888888888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHH
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~ 845 (1335)
+||||||++||+.+++.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.......
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 231 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVY 231 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhH
Confidence 99999999999999999887665544 789999999999998889999999999999999988886554333
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=345.24 Aligned_cols=201 Identities=31% Similarity=0.467 Sum_probs=171.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
.+|+++|++..|++ ++.+|+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 36999999999974 46899999999999999999999999999999999999999999999988
Q ss_pred --eEEEEecCCcC-CCCCHHHHhccCCC------------CChHHHHH---HHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 692 --KTAYVSQTAWI-QTGSIRENILFGSP------------MDSHQYQE---TLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 692 --~~ayv~Q~~~i-~~~Tv~eNIlfg~~------------~~~~~~~~---~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
++||++|++.+ ...||.+|++.|.- +.++.... +++..++.+.. -.|..+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~L 148 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTL 148 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccC
Confidence 37999999876 57799999998742 22222222 23333333222 2466789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccc-cCCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~ 831 (1335)
||||+|||+|||||+++|+|+|.|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++++. +||||+-|++|+|+.
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999887654 46899999999999976 589999999999999
Q ss_pred ecChHHHH
Q 000713 832 AAPYHQLL 839 (1335)
Q Consensus 832 ~g~~~~l~ 839 (1335)
.|+.+|+-
T Consensus 229 Dg~~~el~ 236 (258)
T COG3638 229 DGPASELT 236 (258)
T ss_pred eCChhhhh
Confidence 99999963
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=380.56 Aligned_cols=353 Identities=15% Similarity=0.159 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 000713 969 STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNL 1048 (1335)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l 1048 (1335)
..+..++........+.+....+++++++++++.|++||+++++|.+++|+++|++.+.......+...+..++.+++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 148 (585)
T TIGR01192 69 NTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLI 148 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344445555566679999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhc
Q 000713 1049 GVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTN 1128 (1335)
Q Consensus 1049 ~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~ 1128 (1335)
++++..+|.+.++++.+++++..+.+.+.+..++..+......+...+++.|+++|+.|||+|+.++++.+++.+..+..
T Consensus 149 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 228 (585)
T TIGR01192 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88889999998877766677777777777777777777777888899999999999999999999999988888877766
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000713 1129 ASPFFHSFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVER 1207 (1335)
Q Consensus 1129 ~~~~~~~~~~~~Wl~~rl~~l~~~~~~~-~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveR 1207 (1335)
.+..+.......+...-..++..+...+ ..+.......|.++.|.+-..+.|+..+...+..+...+.++.....+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~r 308 (585)
T TIGR01192 229 LSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLED 308 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433222222221122222221111 112222233678899999889999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCcccCCCCCCCCC-ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhh
Q 000713 1208 LNQYMHVPSEAPEVVEDNRPPPNWP-VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1208 i~~y~~~~~E~~~~~~~~~p~~~WP-~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~R 1286 (1335)
+.+..+.+++.+. ... ++.+| ..|.|+|+||+++|+++. ++|+|+||+|++||++||||++|||||||+++|.|
T Consensus 309 i~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 309 FFDLEDSVFQREE---PAD-APELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred HHHHHcCCccccC---Ccc-CCCCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc
Confidence 9998876544221 111 11122 357899999999997543 59999999999999999999999999999999999
Q ss_pred ccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1287 LIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1287 l~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+++|++|+|.+||+|+.. ++.+++++|||.+|+|||+||.
T Consensus 384 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 429 (585)
T TIGR01192 384 VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429 (585)
T ss_pred CCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHH
Confidence 999999999999999875 4578999999999999999983
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=379.40 Aligned_cols=362 Identities=16% Similarity=0.158 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHH
Q 000713 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGA 1040 (1335)
Q Consensus 961 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~ 1040 (1335)
.++++.++..++.++..+.....+.+....++.++++++++.|++||++.++|++++|+++|++.++..+. .+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~ 136 (555)
T TIGR01194 58 SFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHH
Confidence 35556666677888888888899999999999999999999999999999999999999999999998875 46677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHH--HHH
Q 000713 1041 TTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED--RFF 1118 (1335)
Q Consensus 1041 ~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~--~f~ 1118 (1335)
++.+++.++++++.+|.+.++++.++++...+..+..+..++..+-.....+.+.+++.|++.|+.+||+|+.++ ...
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~ 216 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH
Confidence 888888888899999998876554444443333333333333333344456788999999999999999999854 445
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1119 AKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 1198 (1335)
Q Consensus 1119 ~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~l 1198 (1335)
+++.+..++..+...........+..-.+++..+...+..++... .+.++.|.+...+.|...+...+..+...+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~ 294 (555)
T TIGR01194 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM--FASIDAAAISAFVLALLYIKGPLEMLVSALPIL 294 (555)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444433222111111111222222211111111111 256788888888999999999999999999999
Q ss_pred HHHhHHHHHHHHhhcCCCCCCCcc--c--CCC-CCCCCCccceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEE
Q 000713 1199 ANYIISVERLNQYMHVPSEAPEVV--E--DNR-PPPNWPVVGKVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIV 1270 (1335)
Q Consensus 1199 e~~~~sveRi~~y~~~~~E~~~~~--~--~~~-p~~~WP~~G~I~f~nv~~rY~~~---~~~VLk~is~~I~~GekVGIV 1270 (1335)
++...|.||+.++.+.+.+++... + +.. +++..+..+.|+|+||+++|.+. .+++|+|+||+|++||++|||
T Consensus 295 ~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aiv 374 (555)
T TIGR01194 295 AQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIV 374 (555)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEE
Confidence 999999999999976433221111 1 110 00112235789999999999643 246999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1271 GRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1271 GRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|+||||||||+++|.|+++|++|+|.+||+|++. ++.+++|+|||.||++||+||
T Consensus 375 G~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 375 GENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 9999999999999999999999999999999975 467899999999999999987
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=354.71 Aligned_cols=202 Identities=30% Similarity=0.480 Sum_probs=178.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.++++|++|+|++. .++|+|+|++|++||.++|+|+||||||||++++.|+++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 68899999999764 68999999999999999999999999999999999999999999998873
Q ss_pred EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+|||+|+| .++..||.|.+.||.. ... ++.+++++.|++.+.. .+.+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 79999999 5778999999999853 222 3455666667765543 24567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|.+|+.+|++++||||||+||+..++.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999877776655 7999999999999876 899999999999999999988764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=354.44 Aligned_cols=216 Identities=29% Similarity=0.533 Sum_probs=190.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
++++|++++|++. +++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 46999999999999999999999999999999999999999999999882 79
Q ss_pred EEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++++++.|++||+.++... ......+.++.+++.+.+..+|.|.++.+++++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987542 33344566677788888888988888888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
+||||||++||+++.+.+.+.+.+... |+|+|++||+++.+..||++++|++|++++.|+.+++.+....+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~ 230 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence 999999999999999999876655444 899999999999988899999999999999999988876544443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=353.30 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=188.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999872 79
Q ss_pred EEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++.+++.|++||+.++.. .......+..+.+.+.+.++.++.+..+..++++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998754 334455566677778888888887878888889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcch
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~ 843 (1335)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.++.||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999988766544 46899999999999988899999999999999999988865543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=340.49 Aligned_cols=206 Identities=28% Similarity=0.456 Sum_probs=173.6
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 626 RAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
..++++|+++.|+... -.++++||||+|.+||.++|+|++|||||||.++|+|+.+|++|+|.++|+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3689999999997532 114999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCcC---CCCCHHHHhccCCC-----CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 --TAYVSQTAWI---QTGSIRENILFGSP-----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 --~ayv~Q~~~i---~~~Tv~eNIlfg~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
+-+|+|+|.- +..||++-|.-+.. -.+.+..++++..+|.+.. ..+++.+||||||||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIA 151 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHH
Confidence 5799999852 45699888864322 1223355566666664433 34678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||||..+|+++|||||||+||+.++..|++.+.+.. ..+-|.|+||||+..+.+ ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999998777543 358899999999999876 89999999999999999999876
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 5
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=356.38 Aligned_cols=223 Identities=30% Similarity=0.447 Sum_probs=195.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.+.|+++|++++|++. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999642 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
.++|++|++++++.|++||+........++..+.++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999765444445566777778888889999988999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc-hHHHHHH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS-KEFQELV 849 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~-~~~~~l~ 849 (1335)
+++||||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.+.+++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999998888765544 45689999999999998889999999999999999999987543 3344443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=352.47 Aligned_cols=211 Identities=30% Similarity=0.548 Sum_probs=188.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++|++++++.|++||+.++.+. ...+..+.++.+++.+.++.+|.|..+..+.++.+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998888999999987543 3345566677788888888888888888889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++||||||++||+.+++.+++.+.+. .+++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999998766554 46899999999999988899999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=371.86 Aligned_cols=203 Identities=25% Similarity=0.364 Sum_probs=173.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. +||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 257999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|+|++.++ +.||+|||.|+... +. ++.+++++..++.+. .+.++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 99999887 57999999987532 21 223344455555332 3456679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++.+. .||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999877655443 899999999998875 58999999999999999999997654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=347.36 Aligned_cols=206 Identities=32% Similarity=0.488 Sum_probs=185.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24799999999999999999999999999999999999999999999987 37
Q ss_pred EEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|.++..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987655556666777888888888888899999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
+||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999888766543 45789999999999988899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=370.04 Aligned_cols=204 Identities=26% Similarity=0.384 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
+|+++|++++|+..+ ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996322 24799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+++|+||++.++ +.|++||+.++.. .+.. +..+.++..++.+ ....++.+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHH
Confidence 379999998877 5799999987532 2221 1223333333322 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+|||||+.+|+++|||||||+||+.+...+.+.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999877665444 8999999999999865 8999999999999999999997
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=365.32 Aligned_cols=209 Identities=24% Similarity=0.392 Sum_probs=173.6
Q ss_pred CcccEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------
Q 000713 624 VNRAISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------- 691 (1335)
.+..|+++|++|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 446799999999997422 24699999999999999999999999999999999999999999999875
Q ss_pred -------------------eEEEEecCC--cCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCC
Q 000713 692 -------------------KTAYVSQTA--WIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDN 743 (1335)
Q Consensus 692 -------------------~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~ 743 (1335)
+++||+|+| .+++.|++|||.|+.. .+.+. ..+.++.+++. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----------~ 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----------D 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----------h
Confidence 168999998 6788899999998742 12211 12222222221 1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEE
Q 000713 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVL 822 (1335)
Q Consensus 744 t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~ii 822 (1335)
...++++.+||||||||++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|+||||++++. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 2345778899999999999999999999999999999999999999998876655556899999999999874 689999
Q ss_pred EEeCCeEEEecChHHHHhcc
Q 000713 823 LMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 823 vl~~G~i~~~g~~~~l~~~~ 842 (1335)
+|++|++++.|+++++....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EEECCEEEEeCCHHHHhcCH
Confidence 99999999999999987643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=324.58 Aligned_cols=194 Identities=28% Similarity=0.464 Sum_probs=171.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
+|+++|+++.|++. .++|+|+||+|++||++-|+|||||||||||++|.++.+|++|+|.++|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48899999999864 6799999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCc-CCCCCHHHHhccCCCC---C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 -KTAYVSQTAW-IQTGSIRENILFGSPM---D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 -~~ayv~Q~~~-i~~~Tv~eNIlfg~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
+||+|+|+.- +.+.||.||+.|.... . +++..++++..+|.+....+| .+|||||||||+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHH
Confidence 4799999975 5678999999986432 1 234456677777777666665 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC-CeEEEEeCCeEEEec
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAA 833 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~-D~iivl~~G~i~~~g 833 (1335)
||||+.++|+++|.||||.+|||..+..|++.+.+....|.||+++|||.+.+..+ -+++.+++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999987777777899999999999999876 899999999998654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=371.16 Aligned_cols=188 Identities=28% Similarity=0.374 Sum_probs=161.8
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------eEEEEecCCcCCC-
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------------KTAYVSQTAWIQT- 704 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------------~~ayv~Q~~~i~~- 704 (1335)
+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5689999999999999999999999999999999999999999999987 3799999999985
Q ss_pred CCHHHHhccCCCC---Ch-HHHHHH---HHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 000713 705 GSIRENILFGSPM---DS-HQYQET---LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777 (1335)
Q Consensus 705 ~Tv~eNIlfg~~~---~~-~~~~~~---~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLD 777 (1335)
.||+|||.|+..+ +. +..+++ ++..+|. ...++++.+|||||||||+|||||+.+|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-----------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-----------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 222333 3333332 2345678899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 778 DPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 778 EP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||||||+.+++++.+.+.+... .|+|+|+||||++++. .||+|++|++|++++.|+++++..+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999998876654 4899999999999865 5899999999999999999999765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=320.63 Aligned_cols=199 Identities=30% Similarity=0.421 Sum_probs=172.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|.++++.|+|+.. =-..+++|++||++||+||+||||||||+.|+|+..|.+|+|.++|. ++.+
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678999999642 13578999999999999999999999999999999999999999984 5899
Q ss_pred ecCCcCC-CCCHHHHhccCCC-------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSP-------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|+..+| ..||++||-+|.. .++++.+.+..+.++...++.+| .+|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 9999887 4699999999853 23456667777788887777666 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
++-+|+|||||||||||.-+.++...+.+.. .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998887665543 468999999999998764 7999999999999999999987643
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=344.74 Aligned_cols=205 Identities=37% Similarity=0.601 Sum_probs=181.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|+++.|++. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999642 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++|+++++..|++||+.++... +..+..+.++.+++.+.++..|.|.+|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999988888999999886443 3445667788888888888889888888888899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEec
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g 833 (1335)
++||||||++||+.++..+.+.+.+.. +++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999987665543 358999999999988778999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=350.93 Aligned_cols=200 Identities=29% Similarity=0.405 Sum_probs=166.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999999877
Q ss_pred eEEEEecCCcCCC-CCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 KTAYVSQTAWIQT-GSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
.++|++|++.+++ .|++||+.++.. .+.+ +..++++.+++.+ ....+..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 2689999987765 599999987532 1221 1223333333321 224566789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++++.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999887665544 48999999999998764 89999999999999999988764
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=367.05 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=172.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TA 694 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~a 694 (1335)
..|+++|++++|++ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47999999999963 46899999999999999999999999999999999999999999999883 79
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
||+|++.++ +.|++|||.|+... +.. +.+++++..++.. ...+++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 999999877 56999999997432 211 2223333333321 2245678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
|+.+|+++|||||||+||+..++++.+.+.+...+ |+|+|+||||.+++. .+|+|++|++|+|++.|+++++..+.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998876655443 899999999999875 58999999999999999999997654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=386.90 Aligned_cols=178 Identities=25% Similarity=0.323 Sum_probs=145.2
Q ss_pred eEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE-----------EcCe---------
Q 000713 633 ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-----------VYGK--------- 692 (1335)
Q Consensus 633 ~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~-----------v~g~--------- 692 (1335)
++++|++ +..+|++++ .+++|++++|+||||||||||+++|+|+++|++|+|. ++|+
T Consensus 79 ~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 79 PVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred ceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 6888864 236899999 8999999999999999999999999999999999997 6551
Q ss_pred ------EEEEe----cCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 ------TAYVS----QTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ------~ayv~----Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|.+ |.|.++.+|++||+.... ..++.+++++..++... ......+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 34444 456667789999997421 12344555555555322 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCC
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDG 827 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G 827 (1335)
||||++++|++|||||||++||+..+.++++.+.+... |+|+|+||||++++.. +|+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999987666555 9999999999999875 7999999763
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=358.01 Aligned_cols=205 Identities=26% Similarity=0.418 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
+|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 378999999996432 136999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -----TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|+| .+++.|+.||+.|+.. ... +++.+.++..++.++ ..++.+.+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHH
Confidence 68999998 6778899999998742 111 123344444444221 12456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999998766554456899999999999885 589999999999999999999
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=355.53 Aligned_cols=204 Identities=27% Similarity=0.395 Sum_probs=173.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997432346999999999999999999999999999999999999999999999883 6
Q ss_pred EEEecCCc--CCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAW--IQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|+|. ++..|++|||.|+.. .+. ++..++++..++.+.. ...+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK-----------EREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 567899999998742 222 2334455555554322 345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999998766655444 8999999999998877999999999999999999988654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=357.77 Aligned_cols=206 Identities=24% Similarity=0.402 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999996422 14699999999999999999999999999999999999999999999877
Q ss_pred --eEEEEecCC--cCCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 692 --KTAYVSQTA--WIQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 692 --~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
+++|+||+| .+++.|++||+.|+.. .+.+ +.+++++.+++. +.+..++++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 269999998 5678899999998632 2222 223344444442 1122456778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
++|||||+.+|+++||||||++||+.++.++++.+.+... .|+|+|++|||++++. .||+|++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887665544 3899999999999875 5899999999999999999998
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=366.79 Aligned_cols=202 Identities=29% Similarity=0.380 Sum_probs=172.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999963 46899999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|+|++-++ +.||+|||.|+... +.. +.+++++..++.+ ...+++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHHHHHHHH
Confidence 99999877 57999999987432 221 2333333333322 23467789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+.+|+++|||||||+||+..++++.+.+.+... .|.|+|+||||.+++. .+|+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999887765544 3899999999999875 58999999999999999999998654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=357.37 Aligned_cols=204 Identities=24% Similarity=0.428 Sum_probs=171.5
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 146999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ----TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+++ .+.++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 69999997 5677899999988632 122 2334445555553222 13467789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|++||||++.+|+++||||||++||+.+...+.+.+..... .|.|||++|||++.+. .||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999887665544 4899999999999975 589999999999999999999
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=365.23 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=173.6
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
....++++|++++|++ .++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 11 ~~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 11 LSPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred CCceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 3456999999999963 46899999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++|++|++.++ ..||+|||.|+... ... +.+++++..++.+. ..+++.+|||||||||+||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHH
Confidence 79999998776 56999999987532 111 22334444444322 3456679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
|||+.+|+++|||||||+||++.++.+.+.+.+... .|.|+|+||||.+++. .+|+|++|++|+|++.|+++++..+.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999887765544 4899999999999865 58999999999999999999998654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=356.24 Aligned_cols=205 Identities=25% Similarity=0.403 Sum_probs=170.6
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 13699999999999999999999999999999999999999999998864
Q ss_pred ------------------------eEEEEecCC--cCCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhC
Q 000713 692 ------------------------KTAYVSQTA--WIQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELL 738 (1335)
Q Consensus 692 ------------------------~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l 738 (1335)
.+||++|+| .++..||+|||.|+.. .+.+ +..++++.++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---- 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES---- 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----
Confidence 269999986 4677899999998742 2221 23344444444311
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-c
Q 000713 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-A 817 (1335)
Q Consensus 739 ~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~ 817 (1335)
..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.+.+....|+|+|++|||++++. .
T Consensus 158 ------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 158 ------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 134567899999999999999999999999999999999999999998876655556999999999999875 5
Q ss_pred CCeEEEEeCCeEEEecChHHHHhc
Q 000713 818 FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 818 ~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||+|++|++|++++.|+++++.++
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 899999999999999999998754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=358.24 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=170.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------e
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------K 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~ 692 (1335)
...|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 5 VAPIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred CceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 357999999999963 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+||+||++.++ +.|++||+.|.... +.. +.+++++.+++.+ ....+..+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-----------KADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCchhhCCHHHHHHHHHH
Confidence 79999998776 57999999853221 111 2223333333321 12345568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++++|++++|||||+|||+.+++++++.+.+...+|+|+|++||++++++. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998766655568999999999999865 899999999999999999998643
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=363.68 Aligned_cols=352 Identities=16% Similarity=0.165 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
++++.++..++.+++.+.....+.+...+++.++++++++.|++||+.+++|+++||+++|++.+...+. .+..++..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 54 FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3333444455666777788888999999999999999999999999999999999999999999987654 466777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccH---HHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE---DRFF 1118 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e---~~f~ 1118 (1335)
+.+++.++++++.+|++.++++..+++.+.+..+..+..+...+-.....+...+++.|.++|+.+|+ ++.+ +++.
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~ 211 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFE 211 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHH
Confidence 88888889999999998876665554444444444433333333334567788999999999999995 5443 4566
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1119 AKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLP-PGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1119 ~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~-~~~~~~~v~~~-~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
+++.+..+...+..+... ++......+..++. ...++..+... .+....+.+++...+.+.+...+..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~ 287 (547)
T PRK10522 212 NEYEPDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALP 287 (547)
T ss_pred HHHhHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665544333221 12222222111111 11111111110 1112333444444455556678888889999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
++.....+.+|+.++.+.|.|++. ++..+. |..+.|+|+||+++|+++ +++|+|+||+|+|||++||||+||||
T Consensus 288 ~~~~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsG 361 (547)
T PRK10522 288 TLLSAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSG 361 (547)
T ss_pred HHHHHHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCC
Confidence 999999999999999765543321 111111 223689999999999743 46999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+++|.|+++|++|+|.+||+|++. ++.+++|+|||.||+|||+||
T Consensus 362 KSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 362 KSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 9999999999999999999999999975 467999999999999999987
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=345.62 Aligned_cols=200 Identities=29% Similarity=0.384 Sum_probs=167.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ay 695 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 3789999999964 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC-------ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM-------DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~-------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|+|.++ ..|++||+.++... +.. +.++.++.+++.+ ....++.+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHHH
Confidence 99999876 46999999876422 111 1222333333321 2345677899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||++.+|+++||||||++||+++++.+.+.+.+...+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999998766555443 899999999999875 489999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=362.42 Aligned_cols=202 Identities=33% Similarity=0.427 Sum_probs=170.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ +++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 4889999999964 46999999999999999999999999999999999999999999999873 799
Q ss_pred EecCCcCCC-CCHHHHhccCCCC-------ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 696 VSQTAWIQT-GSIRENILFGSPM-------DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~~-------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++.++. .|++||+.|+... +.+ +.++.++..++.+ ....++.+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHHH
Confidence 999998764 6999999987432 111 2223333333321 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||+.+|+++||||||++||+..++++.+.+.+...+ |+|+|+||||++++. .||+|++|++|++++.|+++++.++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998877655444 899999999999875 4899999999999999999999765
Q ss_pred c
Q 000713 842 S 842 (1335)
Q Consensus 842 ~ 842 (1335)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=364.25 Aligned_cols=202 Identities=28% Similarity=0.400 Sum_probs=171.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC--cEEEEcCe-----------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ--GTIQVYGK-----------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~--G~i~v~g~-----------~ 693 (1335)
.|+++|++++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++ |+|.++|+ +
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 5899999999963 469999999999999999999999999999999999999999 99999873 7
Q ss_pred EEEecCCcCC-CCCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+||+|++.++ ..||+|||.|+... .. .+.+++++..+|.+ ...+++.+|||||||||+|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-----------AAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-----------hhhCChhhCCHHHHHHHHHHH
Confidence 9999999876 56999999986432 21 12333344333322 234567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~--~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||+.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++++. .+|+|++|++|++++.|+++++.++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999998877655544 799999999999875 58999999999999999999998654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=346.18 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=166.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------E
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------T 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------~ 693 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46999999999999999999999999999999999999999999999872 7
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCCCh-H---------HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPMDS-H---------QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~~~-~---------~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
+|++|++.++. .|++||+.++..... . ...+..+ ...+.++.+. -....+.++.+||||||||++
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE--RAEELLERVG--LADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH--HHHHHHHHcC--ccchhhCChhhCCHHHHHHHH
Confidence 99999987765 599999987532110 0 0000000 0111222221 122345677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999998776555578999999999999865 89999999999999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=343.62 Aligned_cols=195 Identities=28% Similarity=0.458 Sum_probs=163.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC-----CCCCcEEEEcCe----------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV-----PHTQGTIQVYGK---------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~-----~~~~G~i~v~g~---------- 692 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 47999999999999999999999999999999999999 999999999772
Q ss_pred -----EEEEecCCcCCCCCHHHHhccCCCC----C----hHHHHHHHHHhccHHHHhhCCCCCCccccCC--CCCCCHHH
Q 000713 693 -----TAYVSQTAWIQTGSIRENILFGSPM----D----SHQYQETLERCSLIKDLELLPYGDNTEIGER--GVNLSGGQ 757 (1335)
Q Consensus 693 -----~ayv~Q~~~i~~~Tv~eNIlfg~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSGGQ 757 (1335)
++|++|++.+++.|++||+.++... . .++..++++.+++.+.+ .++ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcccCCHHH
Confidence 6899999987788999999875321 1 11223344444443222 123 47899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+++.+.+...+ +|+|++|||++++. .||++++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 99999999999999999999999999999999998876655445 99999999999876 58999999999999999876
Q ss_pred H
Q 000713 837 Q 837 (1335)
Q Consensus 837 ~ 837 (1335)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 5
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=338.60 Aligned_cols=198 Identities=44% Similarity=0.807 Sum_probs=177.3
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------------- 691 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------------- 691 (1335)
.+.|+.|+|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999753 4799999999999999999999999999999999999999999999865
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
.++|++|++.+++.|++||+.++.+.+.++.+++++.+++.+.++..|.|+++.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 27899999998889999999987666555667788888888888888999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHH-cCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 772 DIYLLDDPFSAVDAHTASSLFND-YVMEA-LSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~-~~~~~-~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
+++||||||++||+.+.+.+.+. +++.. ..|+|+|++||+.+.+..+|++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988873 44443 34799999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=350.88 Aligned_cols=199 Identities=27% Similarity=0.457 Sum_probs=169.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.|+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 6899999999963 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|+| .++..|++||+.|+.. .+. ++.+++++.+++.+.. ...+.+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-----------DKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCChhhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 221 2334455555554322 345568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
||++.+|+++||||||++||+.++.++.+.+.+...+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998876655556899999999999985 5899999999999999998754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=352.47 Aligned_cols=205 Identities=23% Similarity=0.430 Sum_probs=169.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 24699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhccCCC---CChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 ----KTAYVSQTA--WIQTGSIRENILFGSP---MDSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ----~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++||+||+| .+++.|++|||.|+.. ++.+.. .+.++.+++.. ...++.+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 269999997 5677899999998632 222222 22333333321 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++||||++.+|+++||||||++||+.++..+.+.+.+... .|+|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999876665443 4899999999999875 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=364.15 Aligned_cols=201 Identities=24% Similarity=0.382 Sum_probs=171.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 46999999999999999999999999999999999999999999999873 799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++ +.|++||+.|+... +. ++.+++++.+++.+. ...++.+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-----------~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 99998876 56999999986432 21 123344444444322 3456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+|+++||||||++||+..++.+.+.+.+...+ |+|+|+||||++++. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998876655443 899999999999875 5899999999999999999998764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.66 Aligned_cols=204 Identities=29% Similarity=0.431 Sum_probs=173.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 469999999999642 346999999999999999999999999999999999999999999999883
Q ss_pred EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++ .+++.|++|||.++.. ... ++..++++.++|.+.+ ...+.+||||||||++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL-----------NREPHRLSGGQKQRVAI 151 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 69999998 4667899999987632 121 2234445555554333 34566899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999876655544 8999999999999888999999999999999999988654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=339.07 Aligned_cols=192 Identities=32% Similarity=0.443 Sum_probs=160.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 4799999999999999999999999999999999999999999999987 37999
Q ss_pred ecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++ +.|++||+.++... +.. +.++.++.+++.+. ..+.+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHHHh
Confidence 9998766 57999999875321 111 22334444444322 34556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999887665544 48999999999998764 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=360.43 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=170.0
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
+|+++|++++|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996321 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCC-CCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQT-GSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+++|++|++.++. .|++||+.++.. .+.. +..+.++..++. .....++.+||||||||+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHH
Confidence 2799999988764 799999987532 2221 122233333332 123456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+||||++++|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999887665544 48999999999999865 8999999999999999999987
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=340.52 Aligned_cols=197 Identities=22% Similarity=0.362 Sum_probs=165.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++. .|++||+.++.. .+. ++.++.++.+++.+. ...++.+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999987664 699999987421 111 123344455544322 2345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
+.+|+++||||||++||+++.+.+.+.+.+...+ |+|+|++||+++++.. +|++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999998876665554 8999999999999865 899999999999999887764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=348.32 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+++++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 3789999999953 246999999999999999999999999999999999999999999998872
Q ss_pred EEEEecCCc--CCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAW--IQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|+|. +++.|++|||.++.. .+. ++.+++++.+++... ....+.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHH
Confidence 699999985 467899999987632 122 123334444444322 345667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.++..+++.+.+...+|+|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999988766555568999999999999888999999999999999999987653
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=343.55 Aligned_cols=198 Identities=31% Similarity=0.453 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 246999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCC-CCCHHHHhccCCCC------------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 693 -TAYVSQTAWIQ-TGSIRENILFGSPM------------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 693 -~ayv~Q~~~i~-~~Tv~eNIlfg~~~------------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
++|++|++.++ +.|++||+.++... .. ++..+.++.+++.+ ..+.++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 69999998776 47999999875321 01 12233333333322 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999876665544 4899999999999985 58999999999999999
Q ss_pred ChHHH
Q 000713 834 PYHQL 838 (1335)
Q Consensus 834 ~~~~l 838 (1335)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 99886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=341.43 Aligned_cols=198 Identities=28% Similarity=0.385 Sum_probs=164.5
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
..++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 4689999999996432 14699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCCcCCC-CCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAWIQT-GSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++.++. .|++||+.++.. .+.+ +..++++.+++. ...++++.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHH
Confidence 2799999987765 599999987421 1211 223334443332 2234567799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999876665544 5899999999999988889999999999998775
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=339.50 Aligned_cols=197 Identities=35% Similarity=0.472 Sum_probs=163.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------eEEEEec
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------~~ayv~Q 698 (1335)
|+++|++++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996421 14699999999999999999999999999999999999999999999987 4799999
Q ss_pred CCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++.++. .|++||+.++.. .+. ++.++.++..++.+. ...+..+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHHHHHcC
Confidence 988765 799999987532 111 223344444444332 2345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEe--CCeEEEecCh
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMS--DGEILRAAPY 835 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~--~G~i~~~g~~ 835 (1335)
|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++. .||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999987765543 4899999999999875 589999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=335.92 Aligned_cols=189 Identities=32% Similarity=0.522 Sum_probs=159.8
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------eEEEEec
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------KTAYVSQ 698 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------~~ayv~Q 698 (1335)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367999999641 4699999999999999999999999999999999999999999999987 3799999
Q ss_pred CC--cCCCCCHHHHhccCCCC---ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 699 TA--WIQTGSIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 699 ~~--~i~~~Tv~eNIlfg~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
++ .+++.|++||+.++... +.++..+.++.+++.+. ...++.+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 97 45678999999876432 22344556666655432 2345668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEE
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
+||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+. .||++++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999998766655456899999999999986 48999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=358.37 Aligned_cols=357 Identities=16% Similarity=0.109 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHH-HHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPF-SLIF 1036 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~-~~~~ 1036 (1335)
+..+++++.++..++.+++.++....+.+....++.++++++++.|++. .|..++++++|++.+...+.. .+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555566677788888888889999999999999999999999843 367789999999999987766 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH
Q 000713 1037 AVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR 1116 (1335)
Q Consensus 1037 ~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~ 1116 (1335)
++..++.++ .+++++..+|++.++++..+++.+.+..++.+..+...+-.....+...+++.|+++|+.+||+|+.|++
T Consensus 123 ~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 555544444 3456778888876554433333333333333333333344455667788999999999999999999999
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1117 FFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 1195 (1335)
Q Consensus 1117 f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~-~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~ 1195 (1335)
+.+++.+..++..+..+...........-..++..+.. ++..+.......|.+++|.+-.++.|...+...+..+...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~ 281 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGW 281 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887666554433322222222222222211 11122222233678999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCC
Q 000713 1196 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1275 (1335)
Q Consensus 1196 ~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGS 1275 (1335)
.++.....|.+|+.++.+.|+|.+. ....+ +..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+|||
T Consensus 282 ~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGs 355 (544)
T TIGR01842 282 KQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGS 355 (544)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCC
Confidence 9999999999999999977655421 11111 23578999999999976656799999999999999999999999
Q ss_pred cHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1276 GKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1276 GKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|||||+++|.|+++|++|+|.+||+|+.. ++.++++||||++|+|||+||.
T Consensus 356 GKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 412 (544)
T TIGR01842 356 GKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENI 412 (544)
T ss_pred CHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHH
Confidence 99999999999999999999999999975 4579999999999999999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=339.43 Aligned_cols=191 Identities=25% Similarity=0.440 Sum_probs=159.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 37899999999642 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCCcCC-CCCHHHHhccCCC---CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 --TAYVSQTAWIQ-TGSIRENILFGSP---MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 --~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++.++ ..|++||+.++.. .+ .++..++++.+++.+. ......+||||||||++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK-----------AHALPMQLSGGEQQRVA 148 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 69999998776 4699999987522 11 1233444454444322 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++.. ||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988766554568999999999999874 899999999975
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=341.26 Aligned_cols=202 Identities=27% Similarity=0.380 Sum_probs=171.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 46999999999999999999999999999999999999999999999872 7
Q ss_pred EEEecCCcCCCCCHHHHhccCCCCC---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPMD---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
+|++|++.+++.|++||+.++.... ..+..+.++.+++..++ ..+.+.+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999888889999998764322 22334455555543221 2346778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|+++||||||++||+.+++.+.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999988876665444 48999999999999764 899999999999999999988653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=343.06 Aligned_cols=199 Identities=31% Similarity=0.467 Sum_probs=165.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 14699999999999999999999999999999999999999999999877
Q ss_pred eEEEEecCCcCCC-CCHHHHhccCCCC------------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 KTAYVSQTAWIQT-GSIRENILFGSPM------------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~-~Tv~eNIlfg~~~------------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.++. .|++||+.++... .. ++..+.++..++. ...+.++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCH
Confidence 2789999987654 7999999865321 11 1122223333332 123457789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999887665544 4899999999999987 58999999999999999
Q ss_pred ChHHHH
Q 000713 834 PYHQLL 839 (1335)
Q Consensus 834 ~~~~l~ 839 (1335)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 998863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=339.16 Aligned_cols=191 Identities=30% Similarity=0.435 Sum_probs=158.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCcCCC-CCHHHHhccCCCCC---h----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQT-GSIRENILFGSPMD---S----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~~-~Tv~eNIlfg~~~~---~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
.++|++|++.++. .|++||+.++.... . ++..+.++..++.+ ...+++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 3799999987765 59999998764321 1 12233333333322 23456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999877665544 48999999999998877899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=340.89 Aligned_cols=201 Identities=27% Similarity=0.444 Sum_probs=168.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~a 694 (1335)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 3789999999963 46999999999999999999999999999999999999999999999873 68
Q ss_pred EEecCCcC-CCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWI-QTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i-~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|++|++.+ +..|++||+.++.. ..... ..+.++..++ ....++++.+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHH
Confidence 99999876 57899999986532 11111 1222232222 223456778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
++.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999886665543 58999999999999888999999999999999999888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=353.26 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=166.8
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
...++++|++++|+. .++|+|+||++.+||++|++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence 346899999999974 68999999999999999999999999999999999999999999999995
Q ss_pred --EEEEecCCcC-CCCCHHHHhccCCCCChH----HHHHHHH-HhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 --TAYVSQTAWI-QTGSIRENILFGSPMDSH----QYQETLE-RCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 --~ayv~Q~~~i-~~~Tv~eNIlfg~~~~~~----~~~~~~~-~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
|+.|.|+..+ ++.||.|||.+|.+.... .+++..+ +..+.+.+..- .. ......+||+||||-|+||
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-~~----~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-ID----PDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-CC----hhhhhhhCCHHHHHHHHHH
Confidence 6899999865 688999999988754321 1111111 11122222111 11 3345668999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||+..+++|++||||||+|+.+..+++|+.+.+...+|.++|+|||.++++. -||+|.||+||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999988777889999999999999875 589999999999986543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.18 Aligned_cols=205 Identities=27% Similarity=0.464 Sum_probs=174.6
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
..+.++++|++++|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753334699999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 692 -~~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
.++|++|++.+++.|++||+.++... ......+..+...+.+.++.++.|..+.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 27999999988888999999876432 2222223333445566677777666677888999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
+|+++||||||++||+++++.+.+.+.+. .+++|+|++||+++++..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999988766553 447899999999999888999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=349.68 Aligned_cols=205 Identities=26% Similarity=0.446 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996421 246999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEecCC--cCCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -----TAYVSQTA--WIQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|+| .+++.|++||+.++.. ...+ +.++.++.+++..+ ....++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 68999997 4667899999987532 2211 22333444444211 12456779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988766554456899999999999875 589999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=331.74 Aligned_cols=190 Identities=27% Similarity=0.467 Sum_probs=163.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
+..++++|++++|++. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3569999999999642 24799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
.++|++|+|.+++.|++||+.+...++.+ ++.+.+. +++++.+||||||||++||||++.+|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~---~~~~~l~---------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDE---EIYGALR---------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHH---HHHHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 37999999998889999999865443322 2222221 24577899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999888766554 46899999999999987799999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=353.02 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=168.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KT 693 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ 693 (1335)
..|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46999999999963 4699999999999999999999999999999999999999999999987 37
Q ss_pred EEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|+||++.++ ..|++||+.+... .+.. +.++.++.+++.+ ....+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHHHHHHHHH
Confidence 9999998776 5799999974211 2221 1222333333321 223566789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||+|++|++|+++..|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999998877665557899999999999986 489999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=334.42 Aligned_cols=192 Identities=23% Similarity=0.353 Sum_probs=163.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999953 47999999999999999999999999999999999999999999999873 7899
Q ss_pred ecCCcCC-CCCHHHHhccCCC---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 697 SQTAWIQ-TGSIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++.++ +.|++||+.++.. .+.++.++.++..++.+.. .+++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 6799999976532 2334455556665554332 34567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999987666554568999999999999864 8999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=360.55 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=172.0
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------E
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------T 693 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ 693 (1335)
...++++|++++|++ .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ +
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 457999999999963 46899999999999999999999999999999999999999999999884 7
Q ss_pred EEEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
||++|++-++ ..|+.|||.|+... +.. +..+.++..++.+ ....++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHH
Confidence 9999999876 56999999987431 221 2223333333321 234567799999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||+.+|+++|||||||+||+..++.+.+.+.+... .|.|+|+||||.+++. .+|+|++|++|++++.|+++++..+.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999877665443 4899999999999865 58999999999999999999998654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=344.47 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=169.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g--------- 691 (1335)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 56999999999963 469999999999999999999999999999999999864 5899999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC---C-C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP---M-D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. . + .++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2799999998887899999987531 1 1 112333444444432221 23456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998766554 45799999999999985 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=356.57 Aligned_cols=203 Identities=29% Similarity=0.429 Sum_probs=170.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
...|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 357999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+||+||++.++ ..|++||+.+... .+.. +.++.++.+++.+ ...++..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHHHHHHHH
Confidence 79999998775 6799999975221 1111 1222333333221 12356678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++++|+++||||||+|||+.+++.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.++
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999998776655569999999999999865 899999999999999999998643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=337.33 Aligned_cols=199 Identities=26% Similarity=0.424 Sum_probs=165.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------eE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------KT 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~~ 693 (1335)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 4699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCCC--hH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPMD--SH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~~--~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
+|++|++.++. .|++||+.++.... .+ +..++++.. ..++ ...+.++.+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999997765 59999998764322 11 112222222 1111 123467789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999988766554568999999999998754 8999999999999999888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.92 Aligned_cols=208 Identities=23% Similarity=0.363 Sum_probs=171.8
Q ss_pred CcccEEEEeeEEEecCCC----------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--
Q 000713 624 VNRAISIKSASFSWEESS----------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~----------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-- 691 (1335)
.+..++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 446799999999996421 24689999999999999999999999999999999999999999999976
Q ss_pred --------------eEEEEecCCc--C-CCCCHHHHhccCC-----CCChHH----HHHHHHHhccHHHHhhCCCCCCcc
Q 000713 692 --------------KTAYVSQTAW--I-QTGSIRENILFGS-----PMDSHQ----YQETLERCSLIKDLELLPYGDNTE 745 (1335)
Q Consensus 692 --------------~~ayv~Q~~~--i-~~~Tv~eNIlfg~-----~~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ 745 (1335)
+++||+|+|. + +..||.|||.++. ..+.+. ..+.++..++.++ .
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~ 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------L 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------H
Confidence 3799999983 4 4679999997531 123222 2233444443211 2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLL 823 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iiv 823 (1335)
.+.++.+|||||||||+||||++.+|+++|+||||+|||+.++.++.+.+.+... .|.|+|+||||++.+.. ||+|++
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3567789999999999999999999999999999999999999999987665544 48999999999999875 899999
Q ss_pred EeCCeEEEecChHHHHhc
Q 000713 824 MSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~~~ 841 (1335)
|++|+|++.|+.+++.++
T Consensus 235 l~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHN 252 (331)
T ss_pred EECCEEEEEcCHHHHHcC
Confidence 999999999999999764
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.89 Aligned_cols=202 Identities=28% Similarity=0.418 Sum_probs=167.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 127999999999999999999999999999999999999999999998762
Q ss_pred --EEEEecCCcCCC-CCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 --TAYVSQTAWIQT-GSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 --~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++.++. .|++||+.++.. .+.. +..+.++..++.+ .......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-----------KADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhcChhhCCHHHHHHHH
Confidence 699999998775 699999987532 1211 1223333333322 234566789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998876655444 8999999999999865 89999999999999999888753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=347.40 Aligned_cols=203 Identities=23% Similarity=0.438 Sum_probs=171.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..|+++|++++|++ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 46999999999963 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 --TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 --~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++|++ .+++.|++||+.++.. +.. ++.+++++.+++... ...++.+||||||||+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRV 150 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHH
Confidence 69999998 4678899999987532 111 223444455554322 2356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+|||||+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998766655443 899999999999986 58999999999999999999987
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 64
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.61 Aligned_cols=203 Identities=29% Similarity=0.442 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g~--------- 692 (1335)
+++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 4789999999964 46999999999999999999999999999999999999998 999998762
Q ss_pred ------EEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 ------TAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|+||++.+++.|++||+.++... ... +.+++++..++.++++ ...+.++.+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 7899999988889999999875321 111 2233333444432110 224567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.++..+++.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-KKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887655443 3589999999999876 589999999999999999988
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+..
T Consensus 230 ~~~ 232 (247)
T TIGR00972 230 IFT 232 (247)
T ss_pred HHh
Confidence 864
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=361.28 Aligned_cols=201 Identities=29% Similarity=0.452 Sum_probs=171.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999963 5799999999999999999999999999999999999999999999988 27
Q ss_pred EEEecCCcC-CCCCHHHHhccCCC-----CC------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSP-----MD------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~-----~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
||++|++.+ ++.|++||+.++.. +. .++.+++++..++.+. ......+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-----------~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-----------ADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 999999876 67899999988742 11 1223344444444322 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+|||||+++|+++||||||++||+..+.++++.+.+...+|+|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999998766655556899999999999985 589999999999999999999875
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=348.72 Aligned_cols=201 Identities=29% Similarity=0.473 Sum_probs=174.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
.++++|+++.|+. .+.+|+||||+|++|+++|++||||||||||+++|+|+++|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 5788999999963 25799999999999999999999999999999999999999999999998 379
Q ss_pred EEecCCcC-CCCCHHHHhccCCC-------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWI-QTGSIRENILFGSP-------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i-~~~Tv~eNIlfg~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|+||+|.+ ...|++||+.|... .+.++.+++++..+|.++. +.+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999875 46799999987422 2234556666666654311 34667899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG-KVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~-~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|.++|++|+|||||+|||+..+..+.+.+.+...+| +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999998777777666 799999999999876 89999999999999999988754
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=341.36 Aligned_cols=197 Identities=30% Similarity=0.374 Sum_probs=166.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------eEEEEe
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVS 697 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------~~ayv~ 697 (1335)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 4799999999999999999999999999999999999999999999977 379999
Q ss_pred cCCcCCC-CCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 698 QTAWIQT-GSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 698 Q~~~i~~-~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
|++.++. .|++||+.++... ..++..+.++..++.+. .++++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 7999999876321 12334445555554322 345677999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||||++||+.++..+.+.+.+... .++|+|++|||++++. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999886665433 4899999999999875 58999999999999888754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.55 Aligned_cols=209 Identities=30% Similarity=0.453 Sum_probs=176.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++..|+. .++|+++||++++||+++|+|+||+||||||++|+|..++.+|+|.++|+
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 36899999999974 57999999999999999999999999999999999999999999999984
Q ss_pred -EEEEecCCcCC-CCCHHHHhccCCCCChH-HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 693 -TAYVSQTAWIQ-TGSIRENILFGSPMDSH-QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 693 -~ayv~Q~~~i~-~~Tv~eNIlfg~~~~~~-~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
++||||...+| +.||+||+..|....+. +..+. .+++-++.+|. .....+.++.+|||||||-++|||||+.
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 69999998886 67999999987543222 11110 12333455553 2234567889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+|+++|||||+.||-|...++||+.+.+...+ |.||++|.++..+. +.+||.++|++|+|+.+|+.+|+.++.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999877766544 67999999999985 568999999999999999999998664
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=345.95 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=172.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC---cEEEEcC----------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ---GTIQVYG---------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~---G~i~v~g---------- 691 (1335)
+..|+++|++++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 4579999999999642 2469999999999999999999999999999999999999988 8999887
Q ss_pred ---eEEEEecCCc--CCCCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ---KTAYVSQTAW--IQTGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ---~~ayv~Q~~~--i~~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++. +++.|++||+.|+... +.+ +..+.++.+++.+. .+..+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~G~~q 150 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY-----------IDSEPANLSGGQKQ 150 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHH
Confidence 2699999984 5688999999886322 221 23344555555332 34566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|++||||++++|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998876655443 8999999999999888999999999999999999988
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
...
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.77 Aligned_cols=199 Identities=27% Similarity=0.412 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------E
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------T 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------~ 693 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 46999999999999999999999999999999999999999999999762 6
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|++|++.++. .|++||+.++.+. ... +.++.++..++. ...++.+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHH
Confidence 89999987765 5999999875321 111 112223333222 2345667899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|++.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998866555556899999999998765 489999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.62 Aligned_cols=198 Identities=27% Similarity=0.453 Sum_probs=165.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
|+++|+++.|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 257999999999999999999999999999999999999999999999873 699
Q ss_pred EecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++ +.|++||+.++.. ... ++.+++++.+++.+. .+....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHHH
Confidence 99998776 6799999986421 111 233444555544322 2345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
+.+|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999987665443 46999999999999865 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=341.09 Aligned_cols=204 Identities=23% Similarity=0.347 Sum_probs=170.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe-----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK----------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~----------- 692 (1335)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 479999999999999999999999999999999999974 68999999873
Q ss_pred --EEEEecCCcCCCCCHHHHhccCCCC-----C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 --TAYVSQTAWIQTGSIRENILFGSPM-----D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 --~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|+||++.+++.|++||+.++... . .++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 7999999998889999999875321 1 1123445555555433221 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||||++++|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+. .+|+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999888765554 45899999999999876 589999999999999999998864
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.97 Aligned_cols=190 Identities=38% Similarity=0.604 Sum_probs=158.0
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCC
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTA 700 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~ 700 (1335)
+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 36789999963 46999999999999999999999999999999999999999999999883 89999998
Q ss_pred cC---CCCCHHHHhccCCCC--------C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 701 WI---QTGSIRENILFGSPM--------D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 701 ~i---~~~Tv~eNIlfg~~~--------~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.+ ++.|++||+.++... . .++.+++++.+++.+.+ ..++.+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHH
Confidence 65 457999999875321 1 12334455555554332 24567899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999988776655578999999999999865 7999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=343.90 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=171.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------e
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~ 692 (1335)
..++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 479999999999632 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCC--cCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTA--WIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++ .+++.|++||+.++.. ++.+. ..++++..++.+. ...++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHH
Confidence 69999998 4567899999987532 22222 2334444444332 335667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+++.+.+...+ ++|+|++||+++.+..||++++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998877665444 5999999999998888999999999999999999887654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=344.46 Aligned_cols=205 Identities=26% Similarity=0.394 Sum_probs=172.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 689999999997433346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|++. +++.|+.|||.++.. ...+ +.+++++.+++.+. ....+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF-----------KTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999983 667899999987532 1211 23344444444322 2345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999998866655444 89999999999998889999999999999999999987543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.23 Aligned_cols=195 Identities=23% Similarity=0.384 Sum_probs=161.8
Q ss_pred EEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 628 ISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
|+++|++++|++... .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 789999999964211 1699999999999999999999999999999999999999999999987 379
Q ss_pred EEecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|++|++.++. .|++||+.+... .+. ++..+.++..++.+ ...+++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHHHHHHH
Confidence 9999998766 599999976422 111 12233444444432 2345677999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999988766555568999999999998764 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=344.53 Aligned_cols=205 Identities=24% Similarity=0.398 Sum_probs=172.8
Q ss_pred ccEEEEeeEEEecCCC---CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------
Q 000713 626 RAISIKSASFSWEESS---SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~---~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------- 691 (1335)
..++++|++++|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 4689999999997432 25799999999999999999999999999999999999999999999986
Q ss_pred ---eEEEEecCCc--CCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ---KTAYVSQTAW--IQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ---~~ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|+|. ++..|+.||+.|+.. .+. ++.+++++.+++.+.. +....+|||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~q 151 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYR-----------RHAPHLLSGGQKQ 151 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHH
Confidence 2689999984 556799999998632 121 2334455555554332 3456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|++||||++.+|+++||||||++||+.+++.+.+.+.+... .|.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999876665444 48999999999999877999999999999999999998
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
..+
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=334.44 Aligned_cols=192 Identities=26% Similarity=0.409 Sum_probs=160.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999964 4799999999999999999999999999999999999999999999987 37999
Q ss_pred ecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++ +.|++||+.++.. ...+ +..+.++..++.+ .....+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-----------LLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HHhCChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5699999987532 1222 1223333333322 234566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+++++.+.+.+.+... .|+|+|++||+++.+.. +|+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999887665544 48999999999998765 8999999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=314.15 Aligned_cols=503 Identities=18% Similarity=0.155 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF----KYEGYLLAITLFLAKILESLSQRQRYFRSR 376 (1335)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~----~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 376 (1335)
.-.++|.+++.++....+.+...+ ++..++-.+-+++-+.+.. ..+-..+...++++..+. +.-..+..+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is---~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLIS---QLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 346778888888776666655443 3344444444444332221 111112222222333222 222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 377 LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 377 r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
..-.++|..++ +|.+.-.-..-.+.+++.++.-++.|+..|.-.+..+.++-.+.+-+..+...|++.=+...+..
T Consensus 78 ~~I~klr~~~~----~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 78 HFIYKLRSEFI----KKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHH----HHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33445555544 55554444444456778899999999999986666777666666666667777777666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcc--HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAW--ETHFKNAI-EILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~aw--E~~f~~~I-~~~R~~El~~l~~~~~~~ 533 (1335)
++.+++.+..+++..++..+...+..+..|+-.+....++.|-|.+|+..= |..+.+.+ .+.++.|- ...+..
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n 229 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhh
Confidence 778888888888888888888888999999999999999999999998763 22222222 22233222 111222
Q ss_pred HHH-hHHHhHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000713 534 AYN-GFLFWSSPVLVSTATFGACYFLNVPLY-ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQ 611 (1335)
Q Consensus 534 a~~-~~~~~~~p~lv~~~tF~~~~l~~~~Lt-~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~ 611 (1335)
.+. ....|+.-++.+++....|+...-... ...+.|....+-.|+.|+.++...++.+.+|.++++||.++=..|+..
T Consensus 230 ~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 221 223343333333333333332221111 123334444455689999999999999999999999999987655432
Q ss_pred cccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC
Q 000713 612 SMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691 (1335)
Q Consensus 612 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g 691 (1335)
+-.. .++. ++-..|+++|+.|+|++. ..-+..||++|++||+|-|+|.||||||||++.+.|++.|++|+|.+||
T Consensus 310 ~~~~-~q~~--p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 310 DFPR-PQAF--PDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred cCCC-CCcC--CcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 2111 1111 123469999999999753 3678999999999999999999999999999999999999999999999
Q ss_pred eE-------------EEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 KT-------------AYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ~~-------------ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
+. +-|+-|-|+|+.++ -++. ..++..++-++...+....+. .+|.- ....||-||
T Consensus 385 ~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~ktsl-~d~~f-----s~~kLStGQ 453 (546)
T COG4615 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTSL-NDGRF-----SNLKLSTGQ 453 (546)
T ss_pred ccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhcc-cCCcc-----cccccccch
Confidence 63 22333444443221 1111 223344444444444433322 22221 234699999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEEEec
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g 833 (1335)
|+|+++--|+.-+.|||++||=-+.-||+-++..++..+-. ...||||+.||||-.+...|||++.|++|++++..
T Consensus 454 kKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 454 KKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999999887744 45699999999999999999999999999998753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=346.28 Aligned_cols=204 Identities=23% Similarity=0.404 Sum_probs=168.4
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
|+++|++++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 146999999999999999999999999999999999999999999999772
Q ss_pred ----EEEEecCC--cCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ----TAYVSQTA--WIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|++ .+++.|++||+.++.. .+.+. .+++++..++.+ .....++.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 68999997 5677899999987532 22221 122233333321 1124567799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998876655456899999999999886 4899999999999999999988
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=334.48 Aligned_cols=192 Identities=29% Similarity=0.437 Sum_probs=158.9
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
++++|++++|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
.++|++|++.++ +.|++||+.++.. .+.. +..+.++.+++.+ .....+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 279999998776 5699999987421 2211 2223333333322 23456678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~ 830 (1335)
+||||++.+|+++||||||++||+++++.+.+.+.+... .++|+|++||+++++..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999886665544 489999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=341.25 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=169.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 47999999999963 4699999999999999999999999999999999999987 489999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++|||.++... +.. +..+.++.+++.+.+. .....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 26899999988889999999876321 111 2233334444322111 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+++.+.+. .+++|+|++||+++++. .+|+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998766554 45799999999999975 48999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.94 Aligned_cols=200 Identities=30% Similarity=0.422 Sum_probs=167.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------e
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------K 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------~ 692 (1335)
++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++ ..|++||+.++.. .+.. +..++++..++. .....++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHHHHHHHH
Confidence 69999998776 5699999987531 1221 122333333332 22345667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|++++|||||++||+++++.+.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999988665554568999999999999865 899999999999999999987643
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=316.13 Aligned_cols=202 Identities=24% Similarity=0.371 Sum_probs=168.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
++++++++++|++ ...+++|+||++++||+++|.||||+||||+|+.|.+++.|++|+|.++| ++|
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 4789999999975 34589999999999999999999999999999999999999999999988 467
Q ss_pred EEecCC-cCCCCCHHHHhccCCCC-C------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTA-WIQTGSIRENILFGSPM-D------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~-~i~~~Tv~eNIlfg~~~-~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++-+. .....|+||||.|-... + +.+..++.+..++.+ .+.++..++|-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-----------~~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-----------YLDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-----------HHHHHHhhhchhhHHHHHHHHH
Confidence 777544 44577999999864321 1 223334444444333 2346777899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|.+||++|+||||+||||..+.+.+.+.+.+....|++||+.||.++.++ .||+|+++++|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998877766666667999999999999998 5999999999999999999998653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=346.08 Aligned_cols=199 Identities=30% Similarity=0.395 Sum_probs=165.4
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------------- 691 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------------- 691 (1335)
.++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 4689999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+++|++|++.++ +.|++||+.++.. .+. ++..++++.+++.+.+ ...+.+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHH
Confidence 379999999876 5799999987532 111 2234445555544332 34556899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887665443 4899999999999875 5899999999999999999988653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=346.57 Aligned_cols=206 Identities=24% Similarity=0.394 Sum_probs=167.3
Q ss_pred ccEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 626 RAISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
..|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4589999999996432 13599999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEecCCc--CCCCCHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 ------KTAYVSQTAW--IQTGSIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ------~~ayv~Q~~~--i~~~Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++. +++.|++||+.|+... ..+. ..+.++..++ +. ...++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCHH
Confidence 2689999984 5667999999876321 1111 1122222222 11 1234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876655444 4899999999999875 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9888654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=341.37 Aligned_cols=203 Identities=27% Similarity=0.410 Sum_probs=168.8
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
++.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEecCCcCCC-CCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 692 -------------KTAYVSQTAWIQT-GSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 692 -------------~~ayv~Q~~~i~~-~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+++|++|++.++. .|++||+.++. ..+.. +..+.++..++...+ .++.
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 2699999998775 69999997642 11111 122233333322111 1356
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 77999999999999999999999999999999999999999988665554568999999999999875 89999999999
Q ss_pred EEEecChHHHHh
Q 000713 829 ILRAAPYHQLLA 840 (1335)
Q Consensus 829 i~~~g~~~~l~~ 840 (1335)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999998764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=343.50 Aligned_cols=202 Identities=26% Similarity=0.362 Sum_probs=168.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 47999999999963 4699999999999999999999999999999999999999999999886
Q ss_pred --eEEEEecCCcCCC-CCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 692 --KTAYVSQTAWIQT-GSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 692 --~~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
+++|++|++.+++ .|++||+.++.. .+.. +..+.++..++.+ ....+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHH
Confidence 2789999998775 599999986421 1221 1222333333321 2334667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
++||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++|||++++.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998776655443 8999999999998865 899999999999999999998
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=340.82 Aligned_cols=206 Identities=26% Similarity=0.386 Sum_probs=170.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
...++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 469999999999999999999999999999999999986 5899998876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++..|++||+.++.. .+.+ +.+++++..++.+++ ...+++++.+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 3789999998888999999987532 2221 223344444442222 12345678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .+|++++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766554 45789999999999886 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 988653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=339.14 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=168.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 36999999999963 47999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCC----------------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPM----------------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~----------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
++|++|++.++. .|++||+.++... +... .+..+. ..+.++.+ |-....++++.+||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~~~--gl~~~~~~~~~~LS 155 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEALDR--AATWLERV--GLLEHANRQAGNLA 155 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHHHH--HHHHHHhC--ChhhhhhCChhhCC
Confidence 678999998775 5999999975310 0000 000000 11112222 11223456788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEe
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA 832 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~ 832 (1335)
||||||++||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999998876665554 8999999999999865 899999999999999
Q ss_pred cChHHHHh
Q 000713 833 APYHQLLA 840 (1335)
Q Consensus 833 g~~~~l~~ 840 (1335)
|+.+++.+
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99988754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=330.85 Aligned_cols=206 Identities=31% Similarity=0.409 Sum_probs=172.4
Q ss_pred ccEEEEeeEEEecCCC---------------------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC
Q 000713 626 RAISIKSASFSWEESS---------------------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~---------------------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~ 684 (1335)
..|+++|+++-++++. ...-++|+||+|++||+..|.|-+|||||||++++.++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3578888888776431 1124789999999999999999999999999999999999999
Q ss_pred cEEEEcCe-----------------EEEEecCCc-CCCCCHHHHhccCCCCC----hHHH---HHHHHHhccHHHHhhCC
Q 000713 685 GTIQVYGK-----------------TAYVSQTAW-IQTGSIRENILFGSPMD----SHQY---QETLERCSLIKDLELLP 739 (1335)
Q Consensus 685 G~i~v~g~-----------------~ayv~Q~~~-i~~~Tv~eNIlfg~~~~----~~~~---~~~~~~~~l~~dl~~l~ 739 (1335)
|+|.++|+ ++.|+|+.- +++.||.||+.||.+.. +++. .+.++..+|...-
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~---- 158 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA---- 158 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh----
Confidence 99999983 699999965 56789999999997642 2333 3444555554332
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcc-cc
Q 000713 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFL-PA 817 (1335)
Q Consensus 740 ~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l-~~ 817 (1335)
..++.+|||||||||.|||||..||||+|+|||||||||--+.++-+++++... -+||+|+||||+++. +.
T Consensus 159 -------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 159 -------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred -------hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 246779999999999999999999999999999999999999999888876543 389999999999985 55
Q ss_pred CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 818 FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 818 ~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
-|||.+|+||+|++.|+++|+..+.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCc
Confidence 7999999999999999999998664
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=340.89 Aligned_cols=192 Identities=29% Similarity=0.461 Sum_probs=165.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|+++.|+. ..+++||||+|++||+.|++|+||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 46899999999973 57899999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCcC-CCCCHHHHhccCCCCC------hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 -TAYVSQTAWI-QTGSIRENILFGSPMD------SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 -~ayv~Q~~~i-~~~Tv~eNIlfg~~~~------~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
||.|.|++-+ .+.||.|||..|.+-. .. +.++..+..++.-| ..++..+||-|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCCcchhHH
Confidence 6999999876 5779999999987532 21 22233333333222 235667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+....|+|||+|||.++++.. ||++-||++|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999888778889999999999998765 89999999999864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=331.51 Aligned_cols=192 Identities=25% Similarity=0.434 Sum_probs=160.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------eEEEEec
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------~~ayv~Q 698 (1335)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 3799999
Q ss_pred CCcCCC-CCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQT-GSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~~-~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++.++. .|++||+.++... .. ++..+.++..++.. ...+++.+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 987765 6999999764221 11 12233333333322 23456778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988766555568999999999998864 8999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=333.51 Aligned_cols=196 Identities=26% Similarity=0.388 Sum_probs=162.6
Q ss_pred ccEEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
..|+++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 47999999999964321 3589999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEecCCcCCC-CCHHHHhccCCC---CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAWIQT-GSIRENILFGSP---MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++.++. .|++||+.++.. .+ .++..+.++.+++.+.+ ..++.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRL-----------DHLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHH
Confidence 3799999987765 599999986421 11 12334445555543322 3456689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|++|||++++..+|++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999887665544 38999999999998878999999999999754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=338.27 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
++++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999642 46999999999999999999999999999999999999999999999872 69
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|++|++.++ ..|++||+.++..+ +.. +..+.++..++.+ .....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999877 47999999875321 211 1222333333221 012346678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .+|+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999988887665544 4899999999999875 589999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=340.81 Aligned_cols=204 Identities=23% Similarity=0.355 Sum_probs=169.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 469999999999642 246899999999999999999999999999999999999999999999883
Q ss_pred EEEEecCCc--CCCCCHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAW--IQTGSIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~--i~~~Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|+|. ++..|+++|+.++... ..+. .+++++..++.+ ....++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHH
Confidence 699999985 5567999999886321 1221 222333333322 1235677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999886655444 38999999999999877999999999999999999988654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=341.72 Aligned_cols=201 Identities=24% Similarity=0.349 Sum_probs=167.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 3789999999963 46999999999999999999999999999999999999999999998762
Q ss_pred -EEEEecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 -TAYVSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 -~ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++. ++..|+.||+.++.. .+.. +.+++++..++... ....+.+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVA 146 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHH
Confidence 689999975 466789999987421 1221 12233444444221 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||++.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998866655556899999999999985 4899999999999999999887654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=338.80 Aligned_cols=200 Identities=24% Similarity=0.377 Sum_probs=168.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
+++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4889999999963 47999999999999999999999999999999999999999999999872 7
Q ss_pred EEEecCCcCCC-CCHHHHhccCCC-----C---Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSP-----M---DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~-----~---~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+|++|++.++. .|+.||+.++.. + .. ++.+++++.+++.+. ...++.+||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHH
Confidence 99999987765 499999988631 1 11 123333444444322 2356778999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+. .+|++++|++|+++..|+++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998776654456899999999999876 489999999999999999988764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=334.12 Aligned_cols=198 Identities=29% Similarity=0.455 Sum_probs=165.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------eE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------KT 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~~ 693 (1335)
|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4799999999999999999999999999999999999999999999986 27
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCCC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPMD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++|++.++. .|++||+.++.... .+..+++++..+. + .....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l-------~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---L-------KEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---H-------HHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998765 49999998753221 1122333333221 1 11234567789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
++|+++||||||++||+.+++++.+.+.+... .++|+|++||+++++.. +|+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999877665544 38999999999999875 899999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=339.29 Aligned_cols=201 Identities=32% Similarity=0.457 Sum_probs=167.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
.++++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecCCcCC-CCCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 ------KTAYVSQTAWIQ-TGSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~-~~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++ ..|++||+.++. ..+.+ +..+.++..++. .....++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCChhhCChH
Confidence 369999998776 479999997642 11111 122223322221 1234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999988665555568999999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=354.25 Aligned_cols=188 Identities=30% Similarity=0.458 Sum_probs=160.2
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------------eEEEEecCCc
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------------KTAYVSQTAW 701 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------------~~ayv~Q~~~ 701 (1335)
..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999987 2799999998
Q ss_pred CCC-CCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 702 IQT-GSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 702 i~~-~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
+++ .|++||+.++... +. ++..+.++..+|.+. ....+.+|||||||||+|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 7999999986432 21 122334444444322 2346678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+||||||||||+.+++.+.+.+.+...+ ++|+|++|||++++. .+|+|++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999877765543 899999999999874 5899999999999999999999754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.46 Aligned_cols=199 Identities=28% Similarity=0.394 Sum_probs=164.9
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
+..|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 5 SPLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred CceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 457999999999963 47999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCCCCHHHHhccCCCC-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 693 -TAYVSQTAWIQTGSIRENILFGSPM-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 693 -~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
++|++|++.+++.|++||+.++..+ +.++.++.++..++.+ +....++.+||||||||++||||
T Consensus 82 ~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 82 QVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred ccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHH
Confidence 6999999998888999999864221 1122233333333321 23356778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEe-CCeEEEecChH
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMS-DGEILRAAPYH 836 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~-~G~i~~~g~~~ 836 (1335)
++++|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999988876665444 4899999999999998899999995 66667777764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=334.89 Aligned_cols=201 Identities=27% Similarity=0.404 Sum_probs=158.9
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 378999999996421 12689999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCc--C-CCCCHHHHhccCCCC-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAW--I-QTGSIRENILFGSPM-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~--i-~~~Tv~eNIlfg~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
.++|++|++. + .+.|++||+.++... +.+..+++. .+.++.+... ....++++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGVGLP-EEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHCCCC-hhHhhCCchhcCHHHHHHH
Confidence 2799999983 3 467999999764211 111111110 1112222110 1234567789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999998876655444 899999999999987 58999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=320.17 Aligned_cols=166 Identities=36% Similarity=0.621 Sum_probs=151.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 696 VSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 696 v~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEec
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g 833 (1335)
|||||++||+.+++.+++.+.+. .+++|+|++||++++++.+|++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999998766554 4689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=356.69 Aligned_cols=204 Identities=26% Similarity=0.396 Sum_probs=168.8
Q ss_pred cEEEEeeEEEecCCC---------------------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 627 AISIKSASFSWEESS---------------------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~---------------------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
.|+++|+++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 577788887776532 12379999999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCC
Q 000713 686 TIQVYG-----------------KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPY 740 (1335)
Q Consensus 686 ~i~v~g-----------------~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~ 740 (1335)
+|.++| +++|++|++.++ +.|++||+.++.. ++. ++..+.++.+++.+
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~------- 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN------- 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 999976 379999999876 4699999998632 121 12233444444432
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cC
Q 000713 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AF 818 (1335)
Q Consensus 741 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~ 818 (1335)
....++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++++. .+
T Consensus 157 ----~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 157 ----YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 23456779999999999999999999999999999999999999999887766543 5899999999999875 58
Q ss_pred CeEEEEeCCeEEEecChHHHHhc
Q 000713 819 DSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 819 D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999998764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=338.72 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=168.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCe-------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--H---TQGTIQVYGK------- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~---~~G~i~v~g~------- 692 (1335)
+..|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 10 ~~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 10 QEVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999987 3 6899988762
Q ss_pred --------EEEEecCCcCCCCCHHHHhccCCCC----ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 --------TAYVSQTAWIQTGSIRENILFGSPM----DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 --------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
++|++|++.+++.|++||+.++... +++. .+++++..++.+.+ ....+.++.+||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~G 159 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGG 159 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHH
Confidence 6899999988888999999875321 1111 12233333332211 12345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++++|+++||||||++||++++..+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 238 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999887755543 45799999999999876 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.++
T Consensus 239 ~~~~~~ 244 (259)
T PRK14274 239 NKMFSN 244 (259)
T ss_pred HHHhhC
Confidence 998643
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.79 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=168.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4889999999963 46999999999999999999999999999999999999999999999873 6
Q ss_pred EEEecCCcC-CCCCHHHHhccCCCCC-------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSPMD-------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|++|++.+ ++.|++||+.++.... .++.++.++..++.+. ....+.+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHH
Confidence 899999876 6789999998753211 1123334444444322 23466799999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 766 ALY------QDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 766 Al~------~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|++ .+|+++||||||++||+.+++.+.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999987666554 46899999999999886 589999999999999999988
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+.+
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=339.57 Aligned_cols=207 Identities=26% Similarity=0.389 Sum_probs=168.5
Q ss_pred cEEEEeeEEEecCC------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------
Q 000713 627 AISIKSASFSWEES------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------- 691 (1335)
+|+++|++++|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48899999999632 135799999999999999999999999999999999999999999999877
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 692 -------KTAYVSQTAW--I-QTGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 692 -------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
.++|++|++. + ...|++||+.++. .++. ++..++++..++.. ...+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 2799999973 3 3579999996532 1221 12223333333311 1234567899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~ 831 (1335)
|||||||++||||++++|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988876665544 3899999999999987 589999999999999
Q ss_pred ecChHHHHhcch
Q 000713 832 AAPYHQLLASSK 843 (1335)
Q Consensus 832 ~g~~~~l~~~~~ 843 (1335)
.|+.+++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999876433
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.74 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=167.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 36899999999963 47999999999999999999999999999999999999999999998872
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCC-ChHHHHHHH-HHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPM-DSHQYQETL-ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~-~~~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++|++.++. .|++||+.++... +....++.+ +.......+. .....++.+||||||||++||||++
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-------~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-------ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-------HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 789999987775 5999999876422 111111111 1111111111 1123466789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999998876655556899999999999765 589999999999999999999864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=339.93 Aligned_cols=206 Identities=22% Similarity=0.355 Sum_probs=170.3
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g------- 691 (1335)
.+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999963 4699999999999999999999999999999999999974 899999877
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC-----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM-----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
.++|++|++.+++.|++||+.++... .. ++.++.++.+++.+.+. ...++.+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 26999999988878999999875321 11 12233444444432221 12346678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
||||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999888765544 347899999999999864 7999999999999999
Q ss_pred ChHHHHh
Q 000713 834 PYHQLLA 840 (1335)
Q Consensus 834 ~~~~l~~ 840 (1335)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=341.38 Aligned_cols=202 Identities=26% Similarity=0.457 Sum_probs=169.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.++++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 3789999999963 246999999999999999999999999999999999999999999998872
Q ss_pred -EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 -TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 -~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++ .+++.|++||+.++.. ... ++..+.++.+++.. .....+.+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-----------FENKPPHHLSGGQKKRVA 147 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------hhcCChhhCCHHHHHHHH
Confidence 68999997 4677899999987531 111 12233444444421 123456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||++.+|++++|||||++||+.++..+.+.+.+...+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998876655456899999999999986 5899999999999999999998654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=335.32 Aligned_cols=199 Identities=25% Similarity=0.378 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4889999999963 46999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCCC---------------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPMD---------------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~~---------------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
++|++|++.++. .|++||+.++...+ +++.++.++..++ .....++..+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHH
Confidence 789999998776 59999998753211 0111222222222 22345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||++++++. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999998766544 347999999999999875 899999999999999999
Q ss_pred HHHHh
Q 000713 836 HQLLA 840 (1335)
Q Consensus 836 ~~l~~ 840 (1335)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 98864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=338.13 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=169.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC---CCC--CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE---VPH--TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~---~~~--~~G~i~v~g--------- 691 (1335)
.+++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999996 454 589998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|+||++.+++.|++||+.++... +. ++.+++++.+++.++++ +..++++.+|||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQ 151 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHH
Confidence 27999999988888999999875321 11 12233444444432221 23456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999998766554 45799999999999875 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 98654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=347.74 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=170.1
Q ss_pred ccEEEEeeEEEecCCC-------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 626 RAISIKSASFSWEESS-------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
..|+++|++++|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4699999999996321 24689999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEecCCc--C-CCCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 692 ---------KTAYVSQTAW--I-QTGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 692 ---------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
+++|++|+|. + +..|+.+|+..+. .... ++..+.++.+++.++ .....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE----------HYDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH----------HhcCCCc
Confidence 3799999983 3 4569999986421 1222 123344444444221 1245678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
+|||||||||+|||||+.+|+++|+||||++||+.++.++++.+.+... .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999987765544 48999999999999875 899999999999
Q ss_pred EEecChHHHHhc
Q 000713 830 LRAAPYHQLLAS 841 (1335)
Q Consensus 830 ~~~g~~~~l~~~ 841 (1335)
++.|+.+++.++
T Consensus 234 ve~g~~~~~~~~ 245 (327)
T PRK11308 234 VEKGTKEQIFNN 245 (327)
T ss_pred EEECCHHHHhcC
Confidence 999999999864
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=334.36 Aligned_cols=200 Identities=25% Similarity=0.397 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5889999999963 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++. .|++||+.+.... +.+ +.++.++..++. .....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHH
Confidence 799999987765 6999999875322 111 122222222221 22356678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999888765554456899999999998775 589999999999999999998864
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=339.38 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=169.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 457999999999964 469999999999999999999999999999999999987 6899999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCCCC---h---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSPMD---S---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~---~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.++..|++||+.++.... . ++..++++.+++...+ ......++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHH
Confidence 279999999887789999998864321 1 1223333433332111 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeC-----------
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSD----------- 826 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~----------- 826 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999998765544 45799999999999876 5899999996
Q ss_pred CeEEEecChHHHHhc
Q 000713 827 GEILRAAPYHQLLAS 841 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~ 841 (1335)
|++++.|+++++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=334.19 Aligned_cols=200 Identities=24% Similarity=0.367 Sum_probs=165.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999963 47999999999999999999999999999999999999999999998763
Q ss_pred -----EEEEecCCcCCC-CCHHHHhccCC-C---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -----TAYVSQTAWIQT-GSIRENILFGS-P---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -----~ayv~Q~~~i~~-~Tv~eNIlfg~-~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.++. .|++||+.++. . .... +..+.++..++. ..++..+.+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-----------PYADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHH
Confidence 689999997765 69999996421 1 1111 122223333332 234456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. +|++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988665544468999999999999864 89999999999999999888
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+.+
T Consensus 228 ~~~ 230 (242)
T PRK11124 228 FTQ 230 (242)
T ss_pred hcC
Confidence 643
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=339.65 Aligned_cols=207 Identities=25% Similarity=0.349 Sum_probs=168.7
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g------- 691 (1335)
.+..++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 18 ~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 18 KEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457999999999963 469999999999999999999999999999999999864 6899998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCCC----hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPMD----SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~----~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.+++.|++||+.++.... .. +..+.++.+++..++ ....+.++.+|||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 167 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSG 167 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCH
Confidence 379999999988889999998753211 11 112223333322111 1234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988765544 44689999999999876 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
++++..+
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 9988653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=330.00 Aligned_cols=188 Identities=35% Similarity=0.522 Sum_probs=156.1
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEE
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAY 695 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ay 695 (1335)
+++|++++|++. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 246999999999999999999999999999999999999999999999873 699
Q ss_pred EecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 696 VSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 696 v~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
++|++. +++.|++||+.++.. .+.. +.++.++..++.+. +.+++.+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHH
Confidence 999973 567899999987532 2211 22334444444322 335667999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999998776555568999999999999876 89999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=337.01 Aligned_cols=205 Identities=27% Similarity=0.401 Sum_probs=167.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CC---CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PH---TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~---~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 36899999999963 46999999999999999999999999999999999985 36 589999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC---C-ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP---M-DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. . +.+ +..++++.+++.+.+. +..++++.+|||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQ 153 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHH
Confidence 2799999999888999999986521 1 111 1222333443322111 23456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+++.+.+. .+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998765544 34799999999999875 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 233 ~~~~~ 237 (252)
T PRK14239 233 QMFMN 237 (252)
T ss_pred HHHhC
Confidence 98654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=338.88 Aligned_cols=203 Identities=21% Similarity=0.297 Sum_probs=170.6
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
+...|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 4567999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred --EEEEecCCcCC-CCCHHHHhccCC-CC-------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 --TAYVSQTAWIQ-TGSIRENILFGS-PM-------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 --~ayv~Q~~~i~-~~Tv~eNIlfg~-~~-------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.++ +.|++||+.++. +. .+ ++.+++++..++.+. ...++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHH
Confidence 79999998765 579999998752 11 11 123334444444322 2356779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999887765544 4899999999999875 58999999999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=329.65 Aligned_cols=190 Identities=24% Similarity=0.394 Sum_probs=158.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
|+++|+++.|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999964 46999999999999 9999999999999999999999999999999987 3799
Q ss_pred EecCCcCCC-CCHHHHhccCCC---CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQT-GSIRENILFGSP---MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++. .|++||+.+... .+ .++.++.++.+++.+.. ...+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986421 11 12234445555554322 245678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
+++|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999987665544 4699999999999986 48999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=338.77 Aligned_cols=203 Identities=25% Similarity=0.353 Sum_probs=169.8
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
++..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 8 ~~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 8 SDTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred CCceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 4457999999999963 4799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcC-CCCCHHHHhccCCC--------CC---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -KTAYVSQTAWI-QTGSIRENILFGSP--------MD---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -~~ayv~Q~~~i-~~~Tv~eNIlfg~~--------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++-+ +..|+.||+.++.. .. .++.++.++.+++.+. +.....+||||||
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~ 153 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-----------AHRLVDSLSGGER 153 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCCHHHH
Confidence 27999999755 45699999987531 01 1223444555555332 2345668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.....+ |+|+|++||+++++. .||+|++|++|++++.|+.+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999999888766655443 899999999999986 58999999999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 234 ~~~~ 237 (265)
T PRK10575 234 ELMR 237 (265)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=339.32 Aligned_cols=202 Identities=25% Similarity=0.421 Sum_probs=170.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58899999999632 36999999999999999999999999999999999999999999999873 7
Q ss_pred EEEecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|++. +++.|++||+.++.. .+.+ +.++.++.+++.+. ....+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL-----------RDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 99999973 567899999987532 2322 23444454454332 2345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++++. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999988766655443 899999999999985 5899999999999999999998754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=327.66 Aligned_cols=190 Identities=29% Similarity=0.423 Sum_probs=158.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|+++|++++|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999963 22 3999999999999999999999999999999999999999999883 7999
Q ss_pred ecCCcCCC-CCHHHHhccCCCC-------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSPM-------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++... ++++..++++.+++.+.. ...+.+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-----------KRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99998775 5999999875321 122334455555554332 3455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+++++.+.+.+.+... .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999887665443 48999999999999865 8999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=330.73 Aligned_cols=189 Identities=22% Similarity=0.414 Sum_probs=157.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
+++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3789999999952 24799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 -~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
.++|++|++.++ ..|++||+.++.. .+. ++.++.++..++.+. ......+||||||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGEQQRVA 147 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 268999999876 4699999987522 111 223344444444332 23455689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
||||++.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++++.. ||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999988776655568999999999999875 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=329.71 Aligned_cols=189 Identities=26% Similarity=0.405 Sum_probs=157.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 46999999999999999999999999999999999999999999998773
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++. .|++||+.++.. .+. ++..+.++.+++.+. ....+.+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 799999997765 699999987532 111 123344444444332 234566899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
|||++.+|+++||||||++||+++++.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988766554568999999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=338.21 Aligned_cols=207 Identities=26% Similarity=0.359 Sum_probs=172.2
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g------- 691 (1335)
....|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3457999999999953 579999999999999999999999999999999999986 5899998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.++..|++||+.++... ++ ++..++++.+++.+++. +..++.+.+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCH
Confidence 26999999988888999999875321 11 12233444444432221 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999888766554 45799999999999875 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
++++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9998653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.47 Aligned_cols=198 Identities=27% Similarity=0.457 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcC------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYG------------ 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g------------ 691 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 6899999999963 47999999999999999999999999999999999999886 49999887
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhccCCCC------------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 692 ------KTAYVSQTAWIQT-GSIRENILFGSPM------------DS---HQYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~-~Tv~eNIlfg~~~------------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+++|+||++.++. .|++||+.++... .+ .+.++.++..++.+ .+..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCC
Confidence 2699999987665 6999999875310 11 12233333333322 23456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCC
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDG 827 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G 827 (1335)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+.+... +|+|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999999877665543 4899999999999865 58999999999
Q ss_pred eEEEecChHHH
Q 000713 828 EILRAAPYHQL 838 (1335)
Q Consensus 828 ~i~~~g~~~~l 838 (1335)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.00 Aligned_cols=205 Identities=24% Similarity=0.381 Sum_probs=168.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g--------- 691 (1335)
..|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 46899999999963 46999999999999999999999999999999999999987 69998765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC---C-hHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM---D-SHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~-~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++... . .++ .++.++..++.+.+ ....++++.+|||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQ 152 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHH
Confidence 27999999998888999999876422 1 111 12222223332111 123456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++.+.|+.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999888755443 468999999999999875 7999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14249 232 EIFSR 236 (251)
T ss_pred HHHhC
Confidence 88643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=337.45 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=169.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g-------- 691 (1335)
...|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 10 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 10 QPQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred ceeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 347999999999963 4699999999999999999999999999999999999975 799999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. .+.+. .+++++.+++..++ ....++++.+|||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQ 159 (258)
T ss_pred hHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHH
Confidence 2689999998888999999987532 12211 22333333332111 123356778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988766554 35799999999999886 48999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 88643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=346.37 Aligned_cols=187 Identities=24% Similarity=0.352 Sum_probs=158.7
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEEEecCCcCCC-CCHHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAYVSQTAWIQT-GSIRE 709 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ayv~Q~~~i~~-~Tv~e 709 (1335)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999988 2799999987764 59999
Q ss_pred HhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 710 NILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 710 NIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
|+.+.... .. ++.+++++.+++.+. ...+..+||||||||++||||++++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 99864221 11 123344454444322 2346678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 783 VDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999988766655568999999999999864 89999999999999999998854
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.75 Aligned_cols=205 Identities=22% Similarity=0.354 Sum_probs=170.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 46899999999963 4699999999999999999999999999999999999875 799999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++.+++. ...+.++.+|||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 152 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQ 152 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 26999999998889999999875321 11 12334555555433222 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999998765544 346999999999998765 8999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98643
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=336.43 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=168.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g~--------- 692 (1335)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5899999999963 479999999999999999999999999999999999987 47999998772
Q ss_pred ------EEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 ------TAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.+++.|++||+.++... +.+ +.+++++..++..+. ....++++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 6899999988889999999875321 111 223334443332111 1123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. +|+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999888766554 457999999999999765 89999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=327.61 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=166.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
++++|++++|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 789999999963 22 3999999999999999999999999999999999999999999873 7999
Q ss_pred ecCCcCCC-CCHHHHhccCCC--C--C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSP--M--D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~--~--~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++.. . . .++..+.++..++.+.+ .....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL-----------ARLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHH-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99987765 599999987531 1 1 12234445555554333 3455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+.. +|++++|++|++.+.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999887665544 48999999999999865 799999999999999999988754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.03 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=167.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~a 694 (1335)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999964 4799999999999999999999999999999999999999999999987 279
Q ss_pred EEecCCc-CCCCCHHHHhccCCC-C------C-h---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 695 YVSQTAW-IQTGSIRENILFGSP-M------D-S---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 695 yv~Q~~~-i~~~Tv~eNIlfg~~-~------~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
|++|++. .+..|++||+.++.. . . . ++..+.++.+++.+ ....++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHH
Confidence 9999985 457899999987531 1 0 1 12233333333322 234567789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+...+.+.+.+...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999998776655556899999999999985 589999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.49 Aligned_cols=200 Identities=28% Similarity=0.384 Sum_probs=166.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4799999999999999999999999999999999999999999998876
Q ss_pred ----------eEEEEecCCcCC-CCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 ----------KTAYVSQTAWIQ-TGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i~-~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
.++|++|++.++ ..|++||+.++.. .+.. +..+.++..++.+ ..++.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-----------KADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhhcChhh
Confidence 278999998776 5799999987521 1111 2233333333322 23456778
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
||||||||++||||++++|+++||||||++||+.++..+++.+.+... .|+|+|++||+++.+. .+|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876665544 3899999999999985 58999999999999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.41 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=167.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g~--------- 692 (1335)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 5899999999964 4699999999999999999999999999999999999974 7999999873
Q ss_pred ----EEEEecCCcC-CCCCHHHHhccCCCC-----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 ----TAYVSQTAWI-QTGSIRENILFGSPM-----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ----~ayv~Q~~~i-~~~Tv~eNIlfg~~~-----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.+ ++.|++||+.++... +.. +..+.++.+++.+.+ .......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 7999999864 578999999875321 111 122333333332111 1123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999998876654 45899999999999875 589999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.97 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=167.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998763 699999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.+++.|++||+.++... +. ++..+.++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 26999999988779999999876321 11 12223333444332221 123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987755544 458999999999998765 89999999999999999988
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=336.40 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=168.5
Q ss_pred ccEEEEeeEEEecCC------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------
Q 000713 626 RAISIKSASFSWEES------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------- 691 (1335)
..|+++|++++|+.. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 468999999999631 124799999999999999999999999999999999999999999999986
Q ss_pred -----eEEEEecCCc--C-CCCCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 -----KTAYVSQTAW--I-QTGSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 -----~~ayv~Q~~~--i-~~~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++. + ...|+.+|+.++.. ... ++..++++.+++.++. ....+.+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCH
Confidence 3799999974 3 34599999875321 121 1233444555542211 1235568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999998887666544 48999999999999875 8999999999999999
Q ss_pred ChHHHHhc
Q 000713 834 PYHQLLAS 841 (1335)
Q Consensus 834 ~~~~l~~~ 841 (1335)
+++++.+.
T Consensus 233 ~~~~~~~~ 240 (267)
T PRK15112 233 STADVLAS 240 (267)
T ss_pred CHHHHhcC
Confidence 99998764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.73 Aligned_cols=195 Identities=30% Similarity=0.479 Sum_probs=162.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEec
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQ 698 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q 698 (1335)
+++++|++++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 3789999999963 47999999999999999999999999999999999999999999999873 799999
Q ss_pred CCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++.++. .|++||+.++.. ... ++..+.++..++.+. ...++.+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHHhcC
Confidence 987765 699999987532 111 123334444444322 2346778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEe--CCeEEEecCh
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMS--DGEILRAAPY 835 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~--~G~i~~~g~~ 835 (1335)
|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++++.. ||+|++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999887665433 58999999999998864 89999998 5999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=328.59 Aligned_cols=196 Identities=24% Similarity=0.306 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------eEEEEec
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------~~ayv~Q 698 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4799999999999999999999999999999999999999999999987 3689999
Q ss_pred CCcCC-CCCHHHHhccCC---CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 699 TAWIQ-TGSIRENILFGS---PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 699 ~~~i~-~~Tv~eNIlfg~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
++.++ ..|++||+.++. ..++.+..+.++..++.+. ...++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT-----------GKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH-----------HhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 2233445555565555432 23456789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||+|++|++|++.+.|++++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999998776655556899999999999986 589999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.60 Aligned_cols=199 Identities=24% Similarity=0.264 Sum_probs=161.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g~------------- 692 (1335)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999995 799999999872
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCC----------Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC-CCCH
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPM----------DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSG 755 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~----------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSG 755 (1335)
++|++|++.++. .|++||+.+.... +. ++..+.++..++.++. .+.+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 689999987764 5999999764211 11 1122233333332111 123344 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc--CCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA--FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~--~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999988766555568999999999999875 7999999999999999
Q ss_pred ChHHHH
Q 000713 834 PYHQLL 839 (1335)
Q Consensus 834 ~~~~l~ 839 (1335)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 987653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=343.72 Aligned_cols=199 Identities=27% Similarity=0.413 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+|
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 3789999999963 4699999999999999999999999999999999999999999999988 379
Q ss_pred EEecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|+||++.++. .|++||+.+... .+. ++.++.++..++.+ ..+++..+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-----------EQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999998764 599999975322 111 12333333333322 2346678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++++|++++|||||+|||+.+++.+++.+... .+++|+|++||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999998866544 457999999999998865 89999999999999999999854
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=346.14 Aligned_cols=207 Identities=20% Similarity=0.336 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC----CCCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP----HTQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~----~~~G~i~v~g~--------- 692 (1335)
.++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999965322 358999999999999999999999999999999999997 48999999872
Q ss_pred --------EEEEecCCc---CCCCCHHHHhccC----CCCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 693 --------TAYVSQTAW---IQTGSIRENILFG----SPMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 693 --------~ayv~Q~~~---i~~~Tv~eNIlfg----~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
++|++|+|. .+..|+.+++... ...+. ++..+.++..++.+. ....++++.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 799999984 2446887776432 11121 122333444443210 12345678899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~ 831 (1335)
||||||||+||||++.+|+++|+||||+|||+.++..+.+.+.+... .|.|+|+||||++.+. .+|+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999987766544 5899999999999985 589999999999999
Q ss_pred ecChHHHHhc
Q 000713 832 AAPYHQLLAS 841 (1335)
Q Consensus 832 ~g~~~~l~~~ 841 (1335)
.|+.+++.++
T Consensus 235 ~g~~~~~~~~ 244 (326)
T PRK11022 235 TGKAHDIFRA 244 (326)
T ss_pred ECCHHHHhhC
Confidence 9999999864
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=313.15 Aligned_cols=162 Identities=27% Similarity=0.495 Sum_probs=146.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~ 705 (1335)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~ 785 (1335)
|++||+.++ ++.+||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 786 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
++.+.+.+.+.+. ++|+|++||+.+....||++++|++|.
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999888755432 689999999998877799999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=327.35 Aligned_cols=191 Identities=23% Similarity=0.407 Sum_probs=158.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 247999999999999999999999999999999999999999999998772
Q ss_pred -EEEEecCCcC-CCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 -TAYVSQTAWI-QTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 -~ayv~Q~~~i-~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.+ ++.|++||+.++.. .+.+ +.++.++..++.+. ....+.+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK-----------AKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCchhCCHHHHHHHHH
Confidence 6899999876 57899999987532 2211 12233333333322 234567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++++.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999987666554568999999999999875 79999999999853
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=348.77 Aligned_cols=198 Identities=25% Similarity=0.392 Sum_probs=167.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
|++ |++++|++ + .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 667 89999963 2 23 99999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 692 -~~ayv~Q~~~i~-~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
.++|++|++.++ +.|++||+.++.. .+.++.+++++..++.+. ...++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPL-----------LDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHHHHHH
Confidence 268999999876 5699999998743 223344555555555332 33566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.+|+++||||||++||+..++.+.+.+.+...+ |+|+|+||||++++. .||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999998876655444 899999999999875 48999999999999999999997654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=316.07 Aligned_cols=160 Identities=37% Similarity=0.644 Sum_probs=147.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~a 694 (1335)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999642 24699999999999999999999999999999999999999999999987 379
Q ss_pred EEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
|++|++++++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999988776555568999999999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=334.23 Aligned_cols=204 Identities=23% Similarity=0.362 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 6899999999963 4699999999999999999999999999999999999987 499999876
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhccCCCC-----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -----KTAYVSQTAWIQT-GSIRENILFGSPM-----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~-~Tv~eNIlfg~~~-----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++. .|++||+.++... ..+ +.+++++..++.+.+. ....+++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 2689999998775 5999999875321 111 1122233333221111 1235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999998766654 34799999999999876 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988643
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=336.42 Aligned_cols=206 Identities=22% Similarity=0.352 Sum_probs=168.8
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
...++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 22 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred ceEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 347999999999963 469999999999999999999999999999999999987 6999999877
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC---CChH-H----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP---MDSH-Q----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~~~-~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++..|++||+.++.. .+.+ . ..+.++..++..++. ...++++.+||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgG 171 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGG 171 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHH
Confidence 2799999998888899999987532 1111 1 112222222211221 2345678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++. .||++++|++|++++.|++
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988755544 44799999999999976 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++...
T Consensus 251 ~~~~~~ 256 (271)
T PRK14238 251 DKIFSN 256 (271)
T ss_pred HHHHcC
Confidence 988654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=334.17 Aligned_cols=205 Identities=22% Similarity=0.350 Sum_probs=170.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g--------- 691 (1335)
..|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred eEEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 46999999999963 469999999999999999999999999999999999976 4799999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCCC------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPMD------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+++|++|++.+++.|+.||+.++.... .++..++++.+++..++. ...++++.+|||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQ 158 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHH
Confidence 279999999888789999998764321 122333445555543332 1235677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe---------CCeE
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS---------DGEI 829 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~---------~G~i 829 (1335)
|++||||++.+|+++||||||++||+.+++.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|++
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999988765544 446899999999998764 79999998 8999
Q ss_pred EEecChHHHHhc
Q 000713 830 LRAAPYHQLLAS 841 (1335)
Q Consensus 830 ~~~g~~~~l~~~ 841 (1335)
++.|+.+++.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999998653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=321.34 Aligned_cols=356 Identities=15% Similarity=0.166 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHH
Q 000713 964 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTN 1043 (1335)
Q Consensus 964 ~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~ 1043 (1335)
++|++..+.-++--+.......+.-..++.++++++...+..-.+.-..|+++||+..|++.+|...-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 44566666666666677788899999999999999999888888889999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHH
Q 000713 1044 ACSNLGVLAVVTWQVLFVS-IPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 1122 (1335)
Q Consensus 1044 ~~~~l~vi~~~~~~~~~~~-ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~ 1122 (1335)
..++.+...+.+|++.+.+ ..++++...+--.+.+.+|...+--...|..+++||.|-++|.+--+.||.+++|.+...
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 8888888888888876533 333333333333344455566666667889999999999999999999999999999999
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000713 1123 DLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI-QNQCTLAN 1200 (1335)
Q Consensus 1123 ~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v-~~~~~le~ 1200 (1335)
..-+...+..........|-..-+.++.+++++.. +..+.....|..+.-.+.+++--++.....+.-+. -.+.++..
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 99999999999899999999999988888777633 33333344455453333333333344444444444 45678888
Q ss_pred HhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccc-eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000713 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG-KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1279 (1335)
Q Consensus 1201 ~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G-~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKST 1279 (1335)
..-|.+|+.+..+-++|.... + +.-|..| .++++||+|+|..+.++||+|+||++++||||+|+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~-~-----~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP-D-----EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC-c-----cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999988766665432 1 1112223 89999999999988889999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCeEEECCeecCCcC------CCceeecccccccccHHhh
Q 000713 1280 LRGALFRLIEPARGKILVDGKLAEYDE------PMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1280 Li~aL~Rl~e~~~G~I~IDGvdI~~~~------~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|++.|.|-++|++|+|...|.+++..+ .+++++|.+.||+||+|||
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 999999999999999999999998643 5788999999999999997
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=332.16 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=167.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5889999999963 4699999999999999999999999999999999999986 599999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCCC---C-hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSPM---D-SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~-~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++.++..|++||+.++... . ++ +..+.++..++.+++. ...++.+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 26899999988889999999875321 1 11 1222333334332221 2345677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
||+||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999888755544 346899999999999775 899999999999999998887
Q ss_pred Hh
Q 000713 839 LA 840 (1335)
Q Consensus 839 ~~ 840 (1335)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.57 Aligned_cols=188 Identities=34% Similarity=0.444 Sum_probs=157.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
++++|++++|++ +++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 46999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCCC-CCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++. .|++||+.++. ..+.+ +..+.++.+++.+ .....+.+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-----------KADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhhCccccCHHHHHHHHH
Confidence 689999998764 79999998753 12221 2233333333322 2345667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988766555568999999999999864 899999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=345.28 Aligned_cols=209 Identities=19% Similarity=0.342 Sum_probs=169.5
Q ss_pred cccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcC---------
Q 000713 625 NRAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYG--------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g--------- 691 (1335)
+..++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45799999999996432 246899999999999999999999999999999999999996 99999987
Q ss_pred --------eEEEEecCCc--C-CCCCHHHHhccCC----CCChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 --------KTAYVSQTAW--I-QTGSIRENILFGS----PMDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 --------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
.++|++|+|. + +..|+.+|+.... ..+.+. ..+.++..++ +.+ ...++..+.+
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~~p~~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKMYPHE 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcCCccc
Confidence 3799999983 3 4568988885421 222221 1222222222 221 1235678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
|||||||||+||||++.+|+++|+||||+|||+.++..+.+.+.+... .|.|+|+||||++.+. .+|+|++|++|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999986665544 3899999999999986 58999999999999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+.+++.+.
T Consensus 242 e~g~~~~i~~~ 252 (330)
T PRK09473 242 EYGNARDVFYQ 252 (330)
T ss_pred EECCHHHHHhC
Confidence 99999999764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=335.12 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=169.9
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g------- 691 (1335)
....++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3457999999999963 469999999999999999999999999999999999987 4899999876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.+++.|++||+.++... .+ ++.+++++..++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 36899999988878999999875321 11 11233333333332221 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++.+|+++||||||++||+.++..+.+.+.+.. +++|+|++||+++++. .||+|++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998887665543 4789999999999875 589999999999999999
Q ss_pred hHHHHh
Q 000713 835 YHQLLA 840 (1335)
Q Consensus 835 ~~~l~~ 840 (1335)
++++..
T Consensus 251 ~~~~~~ 256 (272)
T PRK14236 251 TDTLFT 256 (272)
T ss_pred HHHHhc
Confidence 988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=344.87 Aligned_cols=207 Identities=19% Similarity=0.330 Sum_probs=168.1
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC----CCCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP----HTQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~----~~~G~i~v~g---------- 691 (1335)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 589999999996422 2468999999999999999999999999999999999986 5899999987
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhccCC---CC------C----hHHHHHHHHHhccHHHHhhCCCCCCccccC
Q 000713 692 -------KTAYVSQTAWI---QTGSIRENILFGS---PM------D----SHQYQETLERCSLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 692 -------~~ayv~Q~~~i---~~~Tv~eNIlfg~---~~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 748 (1335)
.++|++|+|.. +..||.+|+.+.. .. + .++..+.++..+|.+. .....+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 27999999852 3569999996421 00 1 1122334444444211 012346
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
.+.+|||||||||+|||||+.+|+++|+||||++||+.++.++.+.+.+... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 7789999999999999999999999999999999999999999987766544 48999999999999864 899999999
Q ss_pred CeEEEecChHHHHhc
Q 000713 827 GEILRAAPYHQLLAS 841 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~ 841 (1335)
|+|++.|+.+++.+.
T Consensus 235 G~ive~g~~~~i~~~ 249 (330)
T PRK15093 235 GQTVETAPSKELVTT 249 (330)
T ss_pred CEEEEECCHHHHHhC
Confidence 999999999998764
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=323.53 Aligned_cols=444 Identities=20% Similarity=0.248 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000713 371 RYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLM-----HSGGEIMNYVTVDAYRIGEFPFWFH-QIWTTSVQLCIALII 444 (1335)
Q Consensus 371 ~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~-----~s~G~IvNlms~D~~ri~~~~~~~h-~~w~~plqi~lal~l 444 (1335)
..|..+++.++.|..|...+.+|-|.-...-+-. +..-..=..++.|+..+.+....+. .+....++++--..+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999876433221 1112344678888888877654333 333444555555567
Q ss_pred HHHHHHHHH---------HHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHccHHHHHHhccH
Q 000713 445 LFHAVGLAT---------IAA--LVVITITVLCNTPL----AKLQHKFQTKLMVA-QDERLKACSEAFVNMKVLKLYAWE 508 (1335)
Q Consensus 445 L~~~lG~a~---------l~g--l~v~vl~~~~~~~~----~~~~~~~q~~~m~~-~D~R~~~~sEiL~~ik~IKl~awE 508 (1335)
||..-|..+ ++| +.++++.++....+ +|...+...+..+. -|-|- ....+.++-..|-+|.-|
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~-~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY-SLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-HHHHHHhhHHHHHHhcCc
Confidence 775544221 111 11222333333333 33333332222222 23343 344677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Q 000713 509 THFKNAIEILRNVEYKWLSAVQL----RKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRII 584 (1335)
Q Consensus 509 ~~f~~~I~~~R~~El~~l~~~~~----~~a~~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~l 584 (1335)
+.-.+++.+.=..=++..++... +..+.....++++++-.+ .++=.+..++++-+...++-..|+.+...++.+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l--i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL--IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH--hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 87777665422221211111111 111111112222211111 111124568899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-CC-ccccccc-----CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCc
Q 000713 585 PDVIGVFIQANVAFSRIVNFLEAPE-LQ-SMNIRQK-----GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQ 657 (1335)
Q Consensus 585 p~~i~~~~qa~vS~~RI~~fL~~~e-~~-~~~~~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~ 657 (1335)
-+.+..+.+-+.++.|+.+|-..-| .+ ++..+.. ...+..+..|+++|++..-++. ++.+++.|+++++||
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~ 420 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGE 420 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCC
Confidence 9999999999999999999985321 00 1110000 0000015689999999988753 478999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhccCCC---CChHHHHHHHHHhccH
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTGSIRENILFGSP---MDSHQYQETLERCSLI 732 (1335)
Q Consensus 658 ~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~ 732 (1335)
.+.|.||||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.||.||-|.+... ++++...+++.+|+|.
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 9999999999999999999999999999998863 3799999999999999999998753 5678899999999999
Q ss_pred HHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCC
Q 000713 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812 (1335)
Q Consensus 733 ~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~ 812 (1335)
+-.+.+..-+ +-...||+|||||+++||.++++|++++|||.|||||+.+...+++.+ +..+.+.|+|-|.|+.
T Consensus 501 ~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 501 DLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISVGHRP 574 (604)
T ss_pred HHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEeccch
Confidence 8888765433 345689999999999999999999999999999999999999998754 5567899999999998
Q ss_pred CccccCCeEEEEe
Q 000713 813 DFLPAFDSVLLMS 825 (1335)
Q Consensus 813 ~~l~~~D~iivl~ 825 (1335)
......++.+-+.
T Consensus 575 tl~~~h~~~l~l~ 587 (604)
T COG4178 575 TLWNFHSRQLELL 587 (604)
T ss_pred hhHHHHhhheeec
Confidence 8777666655443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=331.76 Aligned_cols=204 Identities=25% Similarity=0.354 Sum_probs=167.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 5 ~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 5 IILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred ceEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 47999999999963 4799999999999999999999999999999999998753 489998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++... +.. +..++++..++.+++ .+..++.+.+|||||
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQ 154 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHH
Confidence 26899999988888999999986432 111 112223333332222 123567788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .+|++++|++|++++.|+.+
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 99999999999999999999999999999999987665544 34689999999999986 48999999999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 234 ~~~~ 237 (253)
T PRK14261 234 QIFE 237 (253)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=329.66 Aligned_cols=199 Identities=26% Similarity=0.424 Sum_probs=169.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQT 704 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~ 704 (1335)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 6899999999963 4699999999999999999999999999999999999999999999987 5899999986643
Q ss_pred ---CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 705 ---GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 705 ---~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
.|+++|+.+......++..++++.+++.+.+ ..++.+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4899998765434445566667776665433 23567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 782 AVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||+.+.+.+++.+.+...+ |+|+|++||+++++. .+|+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999998766654444 899999999999985 5899999965 7999999998864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=332.74 Aligned_cols=210 Identities=23% Similarity=0.356 Sum_probs=166.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 46999999999964 47999999999999999999999999999999999999999999988762
Q ss_pred ---------EEEEecCCc--C-CCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ---------TAYVSQTAW--I-QTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ---------~ayv~Q~~~--i-~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|++. + .+.|+.||+.+... .....+.+..+. ..+.++.++.+ .+..++++.+|||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~-~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT--AGDWLERVEID-AARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH--HHHHHHHcCCC-hhHHhCCCccCCHHHHH
Confidence 689999974 2 35689999864210 000001111111 11223333322 12456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999998766554443 899999999999997 589999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+..+
T Consensus 239 ~~~~ 242 (258)
T PRK11701 239 VLDD 242 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=332.25 Aligned_cols=204 Identities=30% Similarity=0.456 Sum_probs=167.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999963 4799999999999999999999999999999999999874 899999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCCC----ChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSPM----DSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.++..|++||+.++... ..+.. ++.++..++.+++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 27999999988889999999875321 11111 22233333322211 234567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+. .+|++++|++|++++.|++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999988766554 34799999999999765 589999999999999999988
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=336.15 Aligned_cols=205 Identities=25% Similarity=0.427 Sum_probs=167.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 457999999999963 469999999999999999999999999999999999987 6899999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC---CC---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP---MD---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
+++|++|++.++..|++||+.++.. .. .++.++.++..++.+.+. ...++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHH
Confidence 2689999998887899999986422 11 122333444444322211 123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEE-EEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVL-LMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~ii-vl~~G~i~~~g~~~ 836 (1335)
||++||||++++|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++++.. +|+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 99999999999999999999999999999999887655443 45899999999999865 89975 57999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 266 ~~~~ 269 (285)
T PRK14254 266 KIFE 269 (285)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=330.16 Aligned_cols=206 Identities=21% Similarity=0.344 Sum_probs=168.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--C---CCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--H---TQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~---~~G~i~v~g-------- 691 (1335)
++.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 356999999999963 469999999999999999999999999999999999986 3 689999877
Q ss_pred -------eEEEEecCCcCCC-CCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 -------KTAYVSQTAWIQT-GSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+. ...+..+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCH
Confidence 2789999998776 699999986421 121 12233444444432221 123456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||++++|++|++.+.|+
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988765544 34689999999999985 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
.+++...
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14256 231 TKKIFTT 237 (252)
T ss_pred HHHHHhC
Confidence 9988643
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=332.18 Aligned_cols=203 Identities=24% Similarity=0.381 Sum_probs=165.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-----------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG----------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g----------- 691 (1335)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 479999999999999999999999999999999999986 4799999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCCC-----ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSPM-----DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.+++.|++||+.++... +... ..++++..++.+++ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 26899999988888999999875211 1111 12233333332211 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999887755544 458999999999999864 89999999999999999988
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=321.58 Aligned_cols=191 Identities=28% Similarity=0.432 Sum_probs=159.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEE
Confidence 368999999952 468999999999999999999999999999999999999999999873 7899
Q ss_pred ecCCcCCC-CCHHHHhccCC-C-C-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGS-P-M-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~-~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++. + . ++.+.+++++..++.+.. ...+.+||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-----------DRLPEQLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99998775 69999997642 1 1 112334455555553322 3455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
.+|+++||||||++||+.+++.+.+.+.+... .+.|+|++||+++++. .+|++++|++|++.+.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999887665544 3899999999999876 489999999999998774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=326.64 Aligned_cols=199 Identities=32% Similarity=0.411 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999964 4699999999999999999999999999999999999999999999876 37999
Q ss_pred ecCCcCCC-CCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
||++.++. .|++||+.++... +. ++.++.++..++.+ ..+....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-----------LGDRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 5999999876432 11 11223333333322 223456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++|+++|||||+++||+++.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999998866654444 8999999999998765 89999999999999999998864
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=331.74 Aligned_cols=205 Identities=26% Similarity=0.370 Sum_probs=170.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g-------- 691 (1335)
...|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999963 4699999999999999999999999999999999999875 799998864
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhccCCCC---C-----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 ---------KTAYVSQTAWIQTGSIRENILFGSPM---D-----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 ---------~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
.++|++|++.++..|++||+.++... . +++..+.++.+++.+++. +..++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 26899999998888999999875321 1 123344444554433222 23456778999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|+|||+++++. .||++++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988766544 34689999999999986 58999999999999999
Q ss_pred ChHHHHh
Q 000713 834 PYHQLLA 840 (1335)
Q Consensus 834 ~~~~l~~ 840 (1335)
+.+++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9988864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=334.04 Aligned_cols=205 Identities=25% Similarity=0.370 Sum_probs=169.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 46899999999963 4799999999999999999999999999999999999985 699999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCC----CChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSP----MDSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.+++.|++||+.++.. ...+.+ .+.++.+++...+ .+.+++.+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 2689999998888999999987532 122222 2223333332111 1234567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+++.+.+.. +++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999987655443 46899999999998764 89999999999999999999
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=310.63 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=174.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.+..+|+.++|.. +++++|+||+|++||+|++.||||+||||.+.++.|+++|++|+|.++|.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5788999999964 57999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCCCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPMDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+||.||+|.+|. .||+|||..-.++.. +..++-.+...|.+++.... .-..++.+||||||+|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----lr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----LRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----HhcCcccccccchHHHHHHHHHHh
Confidence 699999999985 599999985444322 21222222334555554322 224678899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-cccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.+|+.+||||||+|+||.....|-+.+.....+|--|+++-|++.+ +..|||.+++.+|+|..+|+++|+.++.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999998866555556679999999999965 7789999999999999999999998653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=332.70 Aligned_cols=201 Identities=28% Similarity=0.464 Sum_probs=165.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------eEEE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------KTAY 695 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------~~ay 695 (1335)
..++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 5 ~~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 5 AGIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred ceEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 46999999999963 24699999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCcC---CCCCHHHHhccCCC-------CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 696 VSQTAWI---QTGSIRENILFGSP-------MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 696 v~Q~~~i---~~~Tv~eNIlfg~~-------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++.+ ...++++|+.++.. .. .++.++.++..++.+. ...+..+||||||||+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-----------RHRQIGELSGGQKKRV 151 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHH
Confidence 9999854 34589999876421 00 1123334444444322 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+. .||+++++ +|++++.|+++++..
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999998776655556899999999998875 57999777 899999999998753
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.10 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=167.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC----CCcEEEEcC-----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH----TQGTIQVYG----------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~----~~G~i~v~g----------- 691 (1335)
.++++|++++| + +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58999999999 2 4699999999999999999999999999999999999999 999999976
Q ss_pred eEEEEecCCc-CC--CCCHHHHhcc-----CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 KTAYVSQTAW-IQ--TGSIRENILF-----GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ~~ayv~Q~~~-i~--~~Tv~eNIlf-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
.++|++|++. .+ ..|+.+|+.+ +....+++..+.++.+++.+. .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3799999974 33 3588888754 222222344455555444210 123466778999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .+|++++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876665444 4899999999999986 5899999999999999999998754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=337.61 Aligned_cols=206 Identities=24% Similarity=0.418 Sum_probs=169.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346999999999964 479999999999999999999999999999999999986 6899999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCCCC--------------------hHHHHHHHHHhccHHHHhhCCCCCCc
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSPMD--------------------SHQYQETLERCSLIKDLELLPYGDNT 744 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~--------------------~~~~~~~~~~~~l~~dl~~l~~gd~t 744 (1335)
+++|++|++.+++.|++||+.++.... .++..+.++.+++..++ .+
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------ND 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hH
Confidence 278999999888889999999763210 11223333434332222 23
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeE-E
Q 000713 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSV-L 822 (1335)
Q Consensus 745 ~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~i-i 822 (1335)
..++++.+||||||||++|||||+++|+++||||||++||+.++..+.+.+.+.. +++|+|++||+++++.. ||++ +
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-EEYTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEE
Confidence 3467788999999999999999999999999999999999999998887665543 45899999999999865 8997 5
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000713 823 LMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 823 vl~~G~i~~~g~~~~l~~~ 841 (1335)
+|++|++++.|+++++.+.
T Consensus 272 ~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 272 FLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EecCCEEEEeCCHHHHHhC
Confidence 6799999999999988643
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=326.20 Aligned_cols=199 Identities=32% Similarity=0.465 Sum_probs=167.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
|+++|+++.|++ ++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468999999963 379999999999999999999999999999999999999999999987 37999
Q ss_pred ecCCcCC-CCCHHHHhccCCCCC---h----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSPMD---S----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~~~---~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++ ..|++||+.++.... . ++..+.++.+++.+. +.+++.+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL-----------LNRKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------HhcCcccCCHHHHHHHHHHHHHH
Confidence 9998776 579999998753211 1 122334444444333 23456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+|++++|||||++||+.+++++.+.+.+... +++|+|++||++++++. +|++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999886665444 38999999999999875 899999999999999999887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=329.31 Aligned_cols=212 Identities=19% Similarity=0.262 Sum_probs=173.1
Q ss_pred ccEEEEeeEEEecCC-----------------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000713 626 RAISIKSASFSWEES-----------------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~-----------------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~ 688 (1335)
..|+++|++++|... ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 458888988888652 123589999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEecCCcCC-CCCHHHHhccCC---CCChHHHH----HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 689 VYGKTAYVSQTAWIQ-TGSIRENILFGS---PMDSHQYQ----ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 689 v~g~~ayv~Q~~~i~-~~Tv~eNIlfg~---~~~~~~~~----~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++|.+++++|++.+. ..|++||+.++. ..+.+... ++++..++. ..+...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCCcccCCHHHHHH
Confidence 999999999998765 569999997642 12222222 122222222 22345677999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
++||||++++|+++||||||++||+...+.+.+.+......|+|+|++||+++.+.. +|+|++|++|++.+.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999988766555568999999999999875 7999999999999999999988
Q ss_pred hcchHHHHH
Q 000713 840 ASSKEFQEL 848 (1335)
Q Consensus 840 ~~~~~~~~l 848 (1335)
....++.+.
T Consensus 232 ~~~~~~~~~ 240 (264)
T PRK13546 232 PKYEAFLND 240 (264)
T ss_pred HHhHHHHHH
Confidence 765444433
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=326.09 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=167.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|+++|++++|++ +++++|+||++++|++++|+|+||||||||+++|+|+++|.+|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999964 46999999999999999999999999999999999999999999999873 7999
Q ss_pred ecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++.. .+. ++.+++++..++.+ .+.....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-----------YANRKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999986532 111 12333444444432 233556799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+|+++||||||++||+.+++.+.+.+.....+ |+|+|++||++++++. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999998766654443 8999999999999865 899999999999999998887643
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.60 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC--------CcEEEEcCe-------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--------QGTIQVYGK------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~--------~G~i~v~g~------- 692 (1335)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 47999999999999999999999999999999999999998 999999873
Q ss_pred ------EEEEecCCc-CCCCCHHHHhccCCC-C-------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 693 ------TAYVSQTAW-IQTGSIRENILFGSP-M-------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 ------~ayv~Q~~~-i~~~Tv~eNIlfg~~-~-------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
++|++|++. ++..|++||+.++.. . .. ++.+++++..++. +..++.+.+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 589999975 567899999987531 1 01 1122333333332 23456778999
Q ss_pred HHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEE
Q 000713 755 GGQKQRIQLARALY---------QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLL 823 (1335)
Q Consensus 755 GGQkqRv~LARAl~---------~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iiv 823 (1335)
|||||||+||||++ .+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998876655444 899999999999986 5899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000713 824 MSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~~ 840 (1335)
|++|++++.|+.+++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.11 Aligned_cols=207 Identities=23% Similarity=0.361 Sum_probs=169.7
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g------- 691 (1335)
.+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 3457999999999963 4699999999999999999999999999999999999863 689998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC---C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM---D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|+.||+.++... . ++...+.++.+++...+. ...++.+.+|||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 166 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQ 166 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHH
Confidence 36899999988878999999875321 1 111223344444432221 12346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEe---------CC
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMS---------DG 827 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~---------~G 827 (1335)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+. .||++++|+ +|
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 99999999999999999999999999999999998766554 34789999999999986 489999997 89
Q ss_pred eEEEecChHHHHhc
Q 000713 828 EILRAAPYHQLLAS 841 (1335)
Q Consensus 828 ~i~~~g~~~~l~~~ 841 (1335)
++++.|+.+++...
T Consensus 246 ~~~~~g~~~~~~~~ 259 (274)
T PRK14265 246 KLVEFSPTEQMFGS 259 (274)
T ss_pred eEEEeCCHHHHHhC
Confidence 99999999998643
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=334.49 Aligned_cols=206 Identities=28% Similarity=0.414 Sum_probs=167.4
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 456999999999963 469999999999999999999999999999999999864 4999999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCCC----ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSPM----DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++..|++||+.++... +... ..+.++..++...+ .....+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHH
Confidence 37899999988878999999876321 1111 12223333322111 11234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988765543 346899999999999864 899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.75 Aligned_cols=205 Identities=24% Similarity=0.383 Sum_probs=166.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCe--------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--H---TQGTIQVYGK-------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~---~~G~i~v~g~-------- 692 (1335)
..|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 4 KIITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred ceEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 46899999999963 469999999999999999999999999999999999865 4 5899998762
Q ss_pred -------EEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 693 -------TAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 693 -------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
++|++|++.+++.|++||+.++... ..+ +..+.++..++...+ ....+..+.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQ 153 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHH
Confidence 7899999988888999999865211 111 112223333322111 122456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+++++.+.+.+.+. .+++|+|++||+++++.. +|+|++|++|++++.|+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998766554 346899999999999864 8999999999999999998
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++..+
T Consensus 233 ~~~~~ 237 (252)
T PRK14255 233 QMFLN 237 (252)
T ss_pred HHhcC
Confidence 87654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.95 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=168.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999963 4699999999999999999999999999999999999885 489999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. +++ ++..++++.+++.+++. ...++.+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 2789999998888999999987521 121 12234444445433222 12345778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe-----CCeEEE
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS-----DGEILR 831 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~-----~G~i~~ 831 (1335)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|+ +|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999999999988766554 346999999999999865 79999998 599999
Q ss_pred ecChHHHHh
Q 000713 832 AAPYHQLLA 840 (1335)
Q Consensus 832 ~g~~~~l~~ 840 (1335)
.|+++++.+
T Consensus 235 ~~~~~~~~~ 243 (259)
T PRK14260 235 FGVTTQIFS 243 (259)
T ss_pred eCCHHHHhc
Confidence 999999864
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=327.98 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=172.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCe--------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYGK-------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g~-------- 692 (1335)
..+.+++.++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 46889999999953 4799999999999999999999999999999999999986 7999998872
Q ss_pred -------EEEEecCCcCCCCCHHHHhccCCCC---C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 -------TAYVSQTAWIQTGSIRENILFGSPM---D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 -------~ayv~Q~~~i~~~Tv~eNIlfg~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|++.+++.|++||+.++... + .++.++.++..++.+++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 6999999998889999999876432 1 1234455555555433321 234677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEe--------CCeEE
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMS--------DGEIL 830 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~--------~G~i~ 830 (1335)
|++||||++++|+++||||||++||+.++..+++.+.+. .+++|+|++||+++.+. .||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999998876654 45789999999999876 589999996 89999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998653
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.53 Aligned_cols=204 Identities=23% Similarity=0.374 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g---------- 691 (1335)
.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999963 469999999999999999999999999999999999864 4899999877
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|+||++.+++.|++||+.++.. .+. ++..+.++.+++.+++.. ..++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 2799999999888899999986521 122 223444555555443321 13456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999988766544 458999999999998875 69999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8543
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.67 Aligned_cols=207 Identities=27% Similarity=0.410 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCC------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------
Q 000713 627 AISIKSASFSWEES------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------- 692 (1335)
.|+++|+++.|++. .++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 1357999999999999999999999999999999999999999999998873
Q ss_pred --------EEEEecCCc--C-CCCCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 693 --------TAYVSQTAW--I-QTGSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 693 --------~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
++|++|++. + .+.|++||+.+.. ..+.. +.++.++.+++.. ...+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 789999973 3 3579999986531 11111 2233333333321 1234567899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999988876655444 38999999999999874 89999999999999
Q ss_pred ecChHHHHhcch
Q 000713 832 AAPYHQLLASSK 843 (1335)
Q Consensus 832 ~g~~~~l~~~~~ 843 (1335)
.|+.+++.....
T Consensus 233 ~g~~~~~~~~~~ 244 (268)
T PRK10419 233 TQPVGDKLTFSS 244 (268)
T ss_pred eCChhhccCCCC
Confidence 999999875443
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.38 Aligned_cols=191 Identities=32% Similarity=0.477 Sum_probs=159.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
++++|+++.|++.. .+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996422 256999999999999999999999999999999999999999999998763
Q ss_pred --EEEEecCCcCCC-CCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 --TAYVSQTAWIQT-GSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 --~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++|++.++. .|+.||+.++.. .+.+ +..+.++.+++.+.+ ...+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 799999997765 799999986532 1111 234444444443332 345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
+||||++.+|+++|||||+++||+.+++.+.+.+.+... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999887655444 48999999999997777899999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=323.59 Aligned_cols=201 Identities=32% Similarity=0.478 Sum_probs=159.4
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe----------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK---------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~---------- 692 (1335)
.+.++|+++.|++.+ .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 357899999997542 3679999999999999999999999999999999999999 99999999873
Q ss_pred EEEEecCCcCCCC-CHHHHhccCCCCC-----hHHHH-HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQTG-SIRENILFGSPMD-----SHQYQ-ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 693 ~ayv~Q~~~i~~~-Tv~eNIlfg~~~~-----~~~~~-~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
++|++|++.+++. |++||+.++.... ..... +..+.. + ++.+ +......+...+||||||||++|||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~---l~~~--~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV-L---LRDL--ALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH-H---HHhh--cchhhhcccccCcCHHHHHHHHHHH
Confidence 7999999987765 9999998752211 11110 011100 1 1111 1112234567799999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC-cc-ccCCeEEEEeCCeEEEec
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD-FL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~l-~~~D~iivl~~G~i~~~g 833 (1335)
|++.+|+++||||||++||+.+++++.+.+.+...+++|+|++||+++ .+ ..+|++++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998866655556899999999983 55 568999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=341.56 Aligned_cols=195 Identities=27% Similarity=0.403 Sum_probs=162.9
Q ss_pred eeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------------EE
Q 000713 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------------TA 694 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------------~a 694 (1335)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78899953 2 35 999999999999999999999999999999999999999998762 68
Q ss_pred EEecCCcCCC-CCHHHHhccCCCC-Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 695 YVSQTAWIQT-GSIRENILFGSPM-DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
|++|++.++. .|++||+.|+... .. ++.++.++..++.+ ..+.++.+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998775 6999999986432 11 12333444443322 334567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+.. +|+|++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998877665544 8999999999998764 8999999999999999999987543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.84 Aligned_cols=204 Identities=26% Similarity=0.402 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g---------- 691 (1335)
.++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 5889999999963 47999999999999999999999999999999999999864 89999876
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhccCCCC----ChHHHH----HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -----KTAYVSQTAWIQT-GSIRENILFGSPM----DSHQYQ----ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~-~Tv~eNIlfg~~~----~~~~~~----~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.++. .|+.||+.++... .++... +.++..++.+.+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcccCCHHH
Confidence 3789999988776 5999999864321 111111 1222222221111 12245677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. ||+|++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457999999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 88653
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=308.37 Aligned_cols=159 Identities=33% Similarity=0.551 Sum_probs=144.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468999999963 46999999999999999999999999999999999999999999998873 689
Q ss_pred EecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 696 VSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999988765 49999984 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeE
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEI 829 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i 829 (1335)
||||||++||+.+++.+.+.+.+...+|.|+|++||+.+++. .+|++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999877666556899999999999887 5899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=327.71 Aligned_cols=206 Identities=22% Similarity=0.377 Sum_probs=169.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g--------- 691 (1335)
..|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 36899999999999999999999999999999999999985 79888765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC---C-Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP---M-DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. . .. ++..++++..++.+.+. ...++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 2789999988877999999986421 1 11 12233344444322221 12356778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeC-----CeEE
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSD-----GEIL 830 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~-----G~i~ 830 (1335)
|||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999999999887665433 48999999999999865 799999999 9999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=319.03 Aligned_cols=185 Identities=30% Similarity=0.398 Sum_probs=154.3
Q ss_pred eeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------eEE
Q 000713 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------------KTA 694 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------------~~a 694 (1335)
|++++|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999964 233 99999999 99999999999999999999999999999999876 378
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC-C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM-D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
|++|++.++ +.|++||+.++... . +++..+.++..++.. ..++++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHHHHHh
Confidence 999999887 46999999875422 1 122334444444432 234567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++. .+|++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998876655444 899999999999886 58999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.44 Aligned_cols=205 Identities=25% Similarity=0.349 Sum_probs=165.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5899999999963 4689999999999999999999999999999999999999999999875
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhccC-----CCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAW--I-QTGSIRENILFG-----SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~--i-~~~Tv~eNIlfg-----~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++. + +..|+.+|+.+. .....+..++ ..+.++.++.. .+..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~l~~l~l~-~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA------AHDWLEEVEID-PTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHH------HHHHHHHcCCC-hhhhhcCchhcCHH
Confidence 2699999974 2 345889998532 1111111111 11223333221 13456678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|.|+|+|||+++++. .+|++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999887665444 4899999999999987 489999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
.+++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9888643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=327.26 Aligned_cols=204 Identities=23% Similarity=0.372 Sum_probs=166.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5899999999964 4699999999999999999999999999999999999974 799999876
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -----KTAYVSQTAWIQT-GSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~-~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.++. .|++||+.++... ... +.+++++..++...+ .......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 2789999987765 6999999864321 111 122333333332111 122346678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEe------CCeEE
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMS------DGEIL 830 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~------~G~i~ 830 (1335)
|||++||||++.+|+++||||||++||+.+...+.+.+.+. .+++|+|++||+++++. .||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999988766544 45789999999999875 589999997 89999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999988653
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=312.76 Aligned_cols=174 Identities=29% Similarity=0.523 Sum_probs=151.5
Q ss_pred cEEEEeeEEEecCC---CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEES---SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~---~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g~--------- 692 (1335)
.|+++|++++|++. ..+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999742 1257999999999999999999999999999999999999 999999999873
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++|++|++.++. .|++||+.++... . +||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 799999987764 6999999753110 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC-ccc-cCCeEEEEeCCeEEEec
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD-FLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~l~-~~D~iivl~~G~i~~~g 833 (1335)
|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++ .+. .+|++++|++|++.+.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999998776655556899999999997 454 58999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=341.13 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=172.9
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcC-C
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI-Q 703 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i-~ 703 (1335)
...++++|+++.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|...++.+.+.+ .
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNG 98 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCC
Confidence 457999999999976444579999999999999999999999999999999999999999999999987666666544 3
Q ss_pred CCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 000713 704 TGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLL 776 (1335)
..|++||+.++.. .+.+. ..++++.+++.+. +..++.+||||||||++||||++.+|+++||
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~-----------ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKF-----------IYQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 5699999976431 22222 2233444444322 2345678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 777 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
||||++||+.+++.+++.+.....+|+|+|++||+++++.. ||++++|++|++++.|+++++......+.
T Consensus 168 DEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~ 238 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFL 238 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHH
Confidence 99999999999999988766555568999999999998865 89999999999999999999876544433
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=342.58 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=173.0
Q ss_pred cccEEEEeeEEEecCC--------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----
Q 000713 625 NRAISIKSASFSWEES--------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~--------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~---- 692 (1335)
+..++++|+++.|... ....+++||||++++||.++|||+||||||||.++|+|+.+|++|+|.++|.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 4568899999999742 2346899999999999999999999999999999999999999999999873
Q ss_pred -----------EEEEecCCcC---CCCCHHHHhccCC----CCC-hH---HHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 693 -----------TAYVSQTAWI---QTGSIRENILFGS----PMD-SH---QYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 693 -----------~ayv~Q~~~i---~~~Tv~eNIlfg~----~~~-~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
+-+++|+|.- +..||+++|.-.. ... .+ +..+.++..+|.++ ..++++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCc
Confidence 4689999853 5679999996432 111 11 23333555555432 356788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
.+|||||||||+|||||..+|+++++|||+||||+.++..+.+.+.+...+ |.|.|+||||+.++.+ ||+|+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 999999999999999999999999999999999999999999877765443 8999999999999976 89999999999
Q ss_pred EEEecChHHHHhc
Q 000713 829 ILRAAPYHQLLAS 841 (1335)
Q Consensus 829 i~~~g~~~~l~~~ 841 (1335)
|++.|+.+++.+.
T Consensus 508 iVE~G~~~~v~~~ 520 (539)
T COG1123 508 IVEEGPTEKVFEN 520 (539)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999998865
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=291.83 Aligned_cols=195 Identities=28% Similarity=0.402 Sum_probs=166.9
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
..|++++++++-+... +..+|++++|.|++||.++||||+||||||||..+.|+..|++|+|.+.|
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 3688888888875432 34689999999999999999999999999999999999999999999977
Q ss_pred ----eEEEEecCCc-CCCCCHHHHhccCCCCCh-------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAW-IQTGSIRENILFGSPMDS-------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~-i~~~Tv~eNIlfg~~~~~-------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|+|+|... +++.|..||+....+.+. ...++.+++.+|.+.+ ...+.+||||++|
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl-----------~HyP~qLSGGEQQ 153 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL-----------THYPAQLSGGEQQ 153 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccc-----------ccCccccCchHHH
Confidence 3799999864 689999999987644332 2244555666654444 4456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEEE
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~ 831 (1335)
||+||||+...|+|++-||||.+||..++++|.+.++.. ...|.|.|+||||......|||++-|++|++++
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999888754 457999999999999999999999999999975
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=300.58 Aligned_cols=205 Identities=28% Similarity=0.411 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
+|+.+|++++-.+ +.+|++++|++++||.++|+||||+||||||++|.||+.|++|++.++|. -
T Consensus 1 mi~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 4788999998753 67999999999999999999999999999999999999999999999984 3
Q ss_pred EEEecCCcC-CCCCHHHHhccCCCCC-----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSPMD-----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~~~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|..||+..+ |.-||+|-+.+|.-.. .++-+++.+++-...|+..+.. +.-.+||||+||||.|||.|
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHH
Confidence 899998765 8889999999985321 1122223333322233333332 33458999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 768 YQ------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 768 ~~------~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
.+ ++++++||||||+||...+.++++...+...+|..|+.|-||++... +||+|++|++|+++..|++++.+.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 87 45699999999999999999999888888888999999999999975 589999999999999999999875
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 231 ~ 231 (259)
T COG4559 231 D 231 (259)
T ss_pred H
Confidence 4
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=311.60 Aligned_cols=174 Identities=29% Similarity=0.439 Sum_probs=151.1
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcC---------eEE
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYG---------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g---------~~a 694 (1335)
.|+++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 588999999996421 246999999999999999999999999999999999986 48999999987 379
Q ss_pred EEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++.++. .|++||+.++.. .+ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987665 699999986310 00 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-c-ccCCeEEEEeC-CeEEEec
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-L-PAFDSVLLMSD-GEILRAA 833 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l-~~~D~iivl~~-G~i~~~g 833 (1335)
+||||||++||+.+++.+++.+.+...+|+|+|++||+++. + ..+|+|++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988766554568999999999984 4 56899999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=296.21 Aligned_cols=203 Identities=26% Similarity=0.412 Sum_probs=170.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
.+++++|+.++|+. ..+|++|||+.++|+.+.|+|.+||||||+|+||.=+..|..|.|.++|.
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 47899999999964 46999999999999999999999999999999999999999999999872
Q ss_pred -------------EEEEecCCcCC-CCCHHHHhccC------CCCC--hHHHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 693 -------------TAYVSQTAWIQ-TGSIRENILFG------SPMD--SHQYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 693 -------------~ayv~Q~~~i~-~~Tv~eNIlfg------~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
.++|+|+..+. .+|+.||+.-. .+-+ .++.+..+.+.++.+.- ...+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~-----------~~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA-----------DAYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh-----------hcCc
Confidence 37999987664 67999999743 2211 12233334444443322 2467
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC-CeEEEEeCCeE
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~-D~iivl~~G~i 829 (1335)
..|||||+||++|||||..+|+++|+|||||||||+-.-++.+-+.+...+|+|.++|||.+.|...+ .+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 78999999999999999999999999999999999998888876667778899999999999999875 99999999999
Q ss_pred EEecChHHHHhcc
Q 000713 830 LRAAPYHQLLASS 842 (1335)
Q Consensus 830 ~~~g~~~~l~~~~ 842 (1335)
-++|+|+++..+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999998653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.51 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=171.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-C----CCcEEEEcC----------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-H----TQGTIQVYG---------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-~----~~G~i~v~g---------- 691 (1335)
++++|++.+|.... ...+++||||++++||++||||+|||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997543 3568999999999999999999999999999999999998 3 578998887
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhc----cCCCC-Ch-H---HHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 -------KTAYVSQTAWI---QTGSIRENIL----FGSPM-DS-H---QYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 -------~~ayv~Q~~~i---~~~Tv~eNIl----fg~~~-~~-~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|+|+||+|-- +-.||.+.+. ..... .+ + +..+.++..++.+ .+..+...+++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 37999999842 3457776664 22211 11 1 2223333333321 12245678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.. ||+|+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999987765543 69999999999998764 8999999999999
Q ss_pred EecChHHHHhcch--HHHHHHHHhh
Q 000713 831 RAAPYHQLLASSK--EFQELVSAHK 853 (1335)
Q Consensus 831 ~~g~~~~l~~~~~--~~~~l~~~~~ 853 (1335)
|.|+.++++++.. ....++++..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNSLP 258 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHhCc
Confidence 9999999987542 3345555443
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=297.02 Aligned_cols=197 Identities=30% Similarity=0.470 Sum_probs=161.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQT 699 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~ 699 (1335)
+.+++++.+|+..+ .++|+|+|++|.+||.++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|+
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 55778899997643 56999999999999999999999999999999999999999999999986 4899999
Q ss_pred CcC-CCCCHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 700 AWI-QTGSIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 700 ~~i-~~~Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
+-+ +..++.||+.||... ++.. ..+.+...+|. + +. .+...+||||||||+.|||||..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~---------~-~~-~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---------G-AE-HKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc---------c-cc-ccceEeecchHHHHHHHHHHhhcCc
Confidence 755 567999999998643 2221 12222222221 1 11 3567799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccc-cCCeEEEEe--CCeEEEecChH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMS--DGEILRAAPYH 836 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~-~~D~iivl~--~G~i~~~g~~~ 836 (1335)
+.++||||++|||+-+++++-+.+++.+ ..||.+++|||++++.- .+++++||+ .|+|++.-+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999877777654 46999999999999865 579999997 58999865543
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=312.15 Aligned_cols=180 Identities=27% Similarity=0.367 Sum_probs=151.6
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe----------
Q 000713 627 AISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK---------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~---------- 692 (1335)
.+.++|++|.|+.. +++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999864 34579999999999999999999999999999999999999 89999999873
Q ss_pred --EEEEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 693 --TAYVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 693 --~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 689999987665 69999998753110 124567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccC-CCcc-ccCCeEEEEeCCeEEEec
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQ-VDFL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~-~~~l-~~~D~iivl~~G~i~~~g 833 (1335)
+|+++||||||++||+.+++.+.+.+.+...+ +.|+|++||+ .+.+ ..||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999998866654444 5676766554 5665 458999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.64 Aligned_cols=365 Identities=17% Similarity=0.229 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhh
Q 000713 956 LRLIVVYLLIGFV------STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD 1029 (1335)
Q Consensus 956 ~~~~~vy~~l~~~------~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~ 1029 (1335)
......|+.+-+. ++++.-+|+++......-+.+.+--++++++....+.|.=...+|.++.-..+-.+.+. .
T Consensus 253 ~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-l 331 (790)
T KOG0056|consen 253 YSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-L 331 (790)
T ss_pred HHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-H
Confidence 3445555555444 35666678877778888899999999999999999999999999988877776666655 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHH
Q 000713 1030 IPFSLIFAVGATTNACSNLGVL-AVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTI 1108 (1335)
Q Consensus 1030 lp~~~~~~~~~~~~~~~~l~vi-~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tI 1108 (1335)
+........-.+..+..+++-. ...+||+.+++..+..+|.++.-..-.=--+.+|-...+--.-++.-.+++-+-.|+
T Consensus 332 l~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETV 411 (790)
T KOG0056|consen 332 LEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETV 411 (790)
T ss_pred HHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhh
Confidence 3333333333334443333322 235777776666555555432211000001112222222222334567889999999
Q ss_pred HhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHHHHHHHHHHHHHH
Q 000713 1109 RAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCM-VLLPPGTFTPGFIGMALSYGLSLNSS 1187 (1335)
Q Consensus 1109 RAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~-v~~~~~~~~~g~~Glalsy~l~l~~~ 1187 (1335)
+-|+.|+.=.+++.+.++.+++..+.....-..|...-+.+-++-.....++. .....++.+.|..-+..+|.+++-+.
T Consensus 412 Kyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~P 491 (790)
T KOG0056|consen 412 KYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMP 491 (790)
T ss_pred hccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCc
Confidence 99999999999999999999988766654444333322222222122122222 22235677888888999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEE
Q 000713 1188 LVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKI 1267 (1335)
Q Consensus 1188 l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekV 1267 (1335)
+||.-.-+..++++++-.||+.+..+.++ ++.+....||---.+|.|+|+||+|.|.|+.| ||+||||+++||+.|
T Consensus 492 LN~FGT~YR~iQ~nfiDmEnmfdllkee~---eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktv 567 (790)
T KOG0056|consen 492 LNFFGTYYRSIQKNFIDMENMFDLLKEEP---EVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhcCc---hhhcCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEE
Confidence 99999999999999999999999986433 33333222333336899999999999999875 999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1268 GIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1268 GIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|+||++|+||||++..|||++|.++|+|.|||+||+. |+.||+||||.+||+.||..|
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yN 631 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYN 631 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeh
Confidence 9999999999999999999999999999999999975 789999999999999999754
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=308.92 Aligned_cols=160 Identities=35% Similarity=0.560 Sum_probs=144.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 68999999987 79999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCC----cCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 693 TAYVSQTA----WIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 693 ~ayv~Q~~----~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 78999985 3456799999976421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988666554568999999999998865 899999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=321.36 Aligned_cols=206 Identities=24% Similarity=0.363 Sum_probs=167.1
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.+.++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 457999999999964 5799999999999999999999999999999999999999997776654
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhccCCC---C-ChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 ------KTAYVSQTAWIQT-GSIRENILFGSP---M-DSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~-~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++. .|++||+.++.. . .++.. .+.++..++.+.+ ....++.+..||||
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G 157 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGG 157 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHH
Confidence 2699999998775 599999987532 1 12122 2222222322111 11245677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .++.|+|++||+++++. .||++++|++|++.+.|+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999888765543 45799999999999985 5899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 237 ~~~~~~ 242 (257)
T PRK14246 237 NEIFTS 242 (257)
T ss_pred HHHHhC
Confidence 988654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=314.68 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=150.1
Q ss_pred EEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------e
Q 000713 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------------K 692 (1335)
Q Consensus 630 i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------------~ 692 (1335)
++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCC---C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPM---D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++|++|++.++. .|++||+.++... + .++.++.++..++.+. .++...+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHH
Confidence 689999998765 7999999874321 1 1223334444444222 2456678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
||++++|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999887665545689999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=306.08 Aligned_cols=160 Identities=38% Similarity=0.531 Sum_probs=145.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------e
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------K 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------~ 692 (1335)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
++|++|++.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 68999998776 56999998763 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCe
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGE 828 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~ 828 (1335)
++++|||||++||+.++..+++.+.+...+ ++|+|++||+++++. .+|++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998877665555 799999999999987 589999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=359.45 Aligned_cols=206 Identities=23% Similarity=0.373 Sum_probs=170.1
Q ss_pred ccEEEEeeEEEecCCC--------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----
Q 000713 626 RAISIKSASFSWEESS--------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~--------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----- 692 (1335)
..++++|+++.|+... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 4699999999996311 246899999999999999999999999999999999999999999999872
Q ss_pred -----------EEEEecCCc--C-CCCCHHHHhccCC---CC-Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 693 -----------TAYVSQTAW--I-QTGSIRENILFGS---PM-DS----HQYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 693 -----------~ayv~Q~~~--i-~~~Tv~eNIlfg~---~~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
++|++|+|. + ...||.||+.++. .. .. ++..+.++.+++..+ ....++
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~----------~~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----------HAWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHH----------HhhCCc
Confidence 799999983 4 4679999997632 11 11 123344444444211 123567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
.+|||||||||+||||++.+|+++||||||++||+.++..+++.+.+...+ |+|+|+||||++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999877665443 8999999999999865 89999999999
Q ss_pred EEEecChHHHHhc
Q 000713 829 ILRAAPYHQLLAS 841 (1335)
Q Consensus 829 i~~~g~~~~l~~~ 841 (1335)
|++.|+.+++...
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=303.59 Aligned_cols=158 Identities=42% Similarity=0.696 Sum_probs=144.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
++++|++++|++. +.++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999653 136899999999999999999999999999999999999999999999872 68
Q ss_pred EEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
|++|++.+++.|+.||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999997 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
||||||++||+.+..++.+.+.+. .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999888766544 45799999999999988899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=309.45 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=170.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.+++++++++|+. -.+++|+||++++||+++++||||||||||+++|.|.++|++|+|.++|+
T Consensus 4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 4779999999964 57999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCCC--------h----HHHHHHHH-HhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPMD--------S----HQYQETLE-RCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~~--------~----~~~~~~~~-~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++--+|.+-+| +.||.||++.+.... . ...+++.+ +..+.+.+.. ....++...+||+|||
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-----~~~a~~~A~~LsyG~q 155 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-----GELADRPAGNLSYGQQ 155 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-----chhhcchhhcCChhHh
Confidence 57889999876 669999998763211 0 01111111 1122222221 1223466779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
+|+.|||||+.+|+++|||||.+||.+....++.+.+.+... .|.|+++|.||++.+. .||||+||+.|+++.+|+|+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999987666554 4699999999999975 58999999999999999999
Q ss_pred HHHhcch
Q 000713 837 QLLASSK 843 (1335)
Q Consensus 837 ~l~~~~~ 843 (1335)
|+.++..
T Consensus 236 eV~~dp~ 242 (250)
T COG0411 236 EVRNNPR 242 (250)
T ss_pred HHhcCHH
Confidence 9987643
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=319.85 Aligned_cols=199 Identities=23% Similarity=0.278 Sum_probs=161.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC--CCCCCcEEEEcCe-----------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE--VPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~--~~~~~G~i~v~g~----------- 692 (1335)
..++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 6 PILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred ceEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 46999999999963 4699999999999999999999999999999999998 5799999998762
Q ss_pred ---EEEEecCCcCCC-CCHHHHhccCCCC----------Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC-CC
Q 000713 693 ---TAYVSQTAWIQT-GSIRENILFGSPM----------DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV-NL 753 (1335)
Q Consensus 693 ---~ayv~Q~~~i~~-~Tv~eNIlfg~~~----------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~L 753 (1335)
++|++|++.++. .|+++|+.++... +. ++..+.++.+++.+ +..++... +|
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~L 152 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGF 152 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCC
Confidence 578999987765 4899998764210 10 11222333333321 12334454 59
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc--CCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA--FDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~--~D~iivl~~G~i~~ 831 (1335)
|||||||++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. +|++++|++|++++
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999987666555568999999999998864 79999999999999
Q ss_pred ecChHH
Q 000713 832 AAPYHQ 837 (1335)
Q Consensus 832 ~g~~~~ 837 (1335)
.|++++
T Consensus 233 ~~~~~~ 238 (252)
T CHL00131 233 TGDAEL 238 (252)
T ss_pred ecChhh
Confidence 998874
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=350.91 Aligned_cols=198 Identities=28% Similarity=0.440 Sum_probs=164.1
Q ss_pred CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcCe----------EEEEecCCcCC-CCC
Q 000713 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYGK----------TAYVSQTAWIQ-TGS 706 (1335)
Q Consensus 641 ~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g~----------~ayv~Q~~~i~-~~T 706 (1335)
.++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3568999999999999999999999999999999999999874 799999995 49999999887 569
Q ss_pred HHHHhccCCCCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCC--CCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 000713 707 IRENILFGSPMDS----HQYQETLERCSLIKDLELLPYGDNTEIGER--GVNLSGGQKQRIQLARALYQDADIYLLDDPF 780 (1335)
Q Consensus 707 v~eNIlfg~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~ 780 (1335)
|+||+.|+...+. .+.++..+.+.+.++++ +++..+|.+|+. +..||||||||++||||++.+|++++|||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999998654321 11111112222333332 223457899974 4789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC-c-cccCCeEEEEeCCeEEEecChHHHH
Q 000713 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD-F-LPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 781 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~-l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
||||++++.++++.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999988776667999999999996 3 5678999999999999999999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=317.75 Aligned_cols=182 Identities=31% Similarity=0.438 Sum_probs=151.1
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCCcCCC-CCHHHHhccCC-
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTAWIQT-GSIRENILFGS- 715 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~~i~~-~Tv~eNIlfg~- 715 (1335)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999884 389999987765 69999997642
Q ss_pred ----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 000713 716 ----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 716 ----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~ 787 (1335)
..+.. +..+.++.+++.+. ....+.+||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 12221 22334444444322 234567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 788 ASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 788 ~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
++.+.+.+.+... .|+|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999887765544 4899999999999876 4899999999999988866554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=317.56 Aligned_cols=189 Identities=25% Similarity=0.376 Sum_probs=154.8
Q ss_pred ceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC----CCcEEEEcC-----------eEEEEecCCc--C-CCCC
Q 000713 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH----TQGTIQVYG-----------KTAYVSQTAW--I-QTGS 706 (1335)
Q Consensus 645 ~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~----~~G~i~v~g-----------~~ayv~Q~~~--i-~~~T 706 (1335)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. + ...|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999987 3799999984 3 2469
Q ss_pred HHHHhccCCC----CCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 707 IRENILFGSP----MDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 707 v~eNIlfg~~----~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
++||+.+... ... ++..+.++.+++.+ + .+..++.+.+|||||||||+||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 111 12333444444321 1 1234567789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 780 FSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|++||+.+.+.+.+.+.+... .|+|+|++||+++.+. .+|++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999887665544 3899999999999986 5899999999999999999998754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.48 Aligned_cols=184 Identities=26% Similarity=0.345 Sum_probs=155.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~a 694 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 3789999999964 46999999999999999999999999999999999999999999999873 68
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
|++|++.++ +.|++||+.++.+. +.++.+++++..++.+.. ..++.+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhc
Confidence 999998765 46999999875432 233455666666664332 23567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC-CeEEEE
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLM 824 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~-D~iivl 824 (1335)
+|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++++..+ ++++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999876655545689999999999999876 777766
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=315.64 Aligned_cols=192 Identities=26% Similarity=0.323 Sum_probs=154.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecC-CcC-CCC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT-AWI-QTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~-~~i-~~~ 705 (1335)
+.++|++..|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+..+..+. ..+ ++.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 677888888864 579999999999999999999999999999999999999999999999986554442 333 467
Q ss_pred CHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 706 SIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 706 Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
|++||+.++... +... ..++++..++.+ ...+...+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-----------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999865321 1111 122222222221 2234567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
||++||+.+++.+.+.+.+...+++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999998877655556899999999999886 48999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.91 Aligned_cols=193 Identities=28% Similarity=0.432 Sum_probs=158.9
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEE
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAY 695 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ay 695 (1335)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++|+ ++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777773 279999999999999999999999999999999999864 999999873 689
Q ss_pred EecCCc-CCCCCHHHHhccCCCC--Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 696 VSQTAW-IQTGSIRENILFGSPM--DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 696 v~Q~~~-i~~~Tv~eNIlfg~~~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++. .++.|++||+.++... +. ++.++.++..++.+. ....+.+||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 999974 5578999999886432 11 123444444444322 23566789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 769 Q-------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 769 ~-------~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+ +|+++||||||++||+.+++.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 77999999999999999999988766655556899999999999765 589999999999999999988754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=307.56 Aligned_cols=172 Identities=27% Similarity=0.361 Sum_probs=149.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC--CCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE--VPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~--~~~~~G~i~v~g~------------- 692 (1335)
++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 5799999999872
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++|++|++.+++ .|+++|+ . ....+||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 789999987765 4666655 0 01247999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc--cCCeEEEEeCCeEEEecChHHH
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP--AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~--~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .+|++++|++|++.+.| ..|+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 9999999999999999999998776665556899999999999887 58999999999999998 4444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=310.36 Aligned_cols=365 Identities=16% Similarity=0.163 Sum_probs=277.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHH
Q 000713 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI 1035 (1335)
Q Consensus 956 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~ 1035 (1335)
..+++..+++.++-.+....+.-.....+.++-..++.++++++.+.+..|-...|+|.+...++.-++.++..+...+-
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666677777788888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcc
Q 000713 1036 FAVGATTNACSNLGVLAVVTWQVLF---VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 1112 (1335)
Q Consensus 1036 ~~~~~~~~~~~~l~vi~~~~~~~~~---~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~ 1112 (1335)
.++.+.+..+..++.++..+|...+ ++.|+++++..+... ++.+. .+-.-.+-.-+-+||-+.+.|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~--~a~~~-s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL--AAKDA-SEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHhHH-HHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 9999999999999999999988654 456777776554322 11111 11222344557799999999999999999
Q ss_pred cHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CCcCHHHHHHHHHHHHHHHHHHHH
Q 000713 1113 EEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVL-LPP-GTFTPGFIGMALSYGLSLNSSLVM 1190 (1335)
Q Consensus 1113 ~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~-~~~-~~~~~g~~Glalsy~l~l~~~l~~ 1190 (1335)
..+.-.++..+.-.+..+..+...-.+---+..+|++..+-++.+++.... +.. |.++-...=+++--+.-+...+-.
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 987766666555544444433332222222445666666655555544332 222 455544444556667777778887
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000713 1191 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1270 (1335)
Q Consensus 1191 ~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIV 1270 (1335)
+-..|-.-.+...+.|.+..+.+.|.+.+... ......|-...+|+.+|++++|+++. ++++|+||+++|||+++||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 77778888888899999999998766543221 11123444456777889999998665 7999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1271 GRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1271 GRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|+||||||||+++|.++.+|++|+|.+||+|... ++++++|+|+|++|.||||||.
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence 9999999999999999999999999999999876 4679999999999999999984
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=314.97 Aligned_cols=199 Identities=26% Similarity=0.306 Sum_probs=154.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g------------- 691 (1335)
+|+++|++++|++ +++++|+||+|++|++++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 3789999999963 46999999999999999999999999999999999995 69999999987
Q ss_pred -eEEEEecCCcCCC-CCHHHHhccCC-------C---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC-CCC
Q 000713 692 -KTAYVSQTAWIQT-GSIRENILFGS-------P---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLS 754 (1335)
Q Consensus 692 -~~ayv~Q~~~i~~-~Tv~eNIlfg~-------~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LS 754 (1335)
.++|++|++.++. .|..+++.+.. . .+. ++.++.++..+ ++.+.. ...+. +||
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~---~~~~~~~LS 147 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLL---TRSVNVGFS 147 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhc---ccCCCCCCC
Confidence 2789999986543 35555543210 0 010 01111112111 221111 12233 799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc--CCeEEEEeCCeEEEe
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA--FDSVLLMSDGEILRA 832 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~--~D~iivl~~G~i~~~ 832 (1335)
||||||++||||++++|+++||||||++||+.+.+.+.+.+......++|+|++|||++++.. +|+|++|++|++++.
T Consensus 148 ~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 148 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999999999999999887655544458999999999999876 799999999999999
Q ss_pred cChHHH
Q 000713 833 APYHQL 838 (1335)
Q Consensus 833 g~~~~l 838 (1335)
|+++++
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 998754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.77 Aligned_cols=180 Identities=24% Similarity=0.336 Sum_probs=146.5
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEEEe-cCCcC-CCCCHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAYVS-QTAWI-QTGSIR 708 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ayv~-Q~~~i-~~~Tv~ 708 (1335)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++ |++.+ ...|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 46999999999999999999999999999999999999999999999773 68997 55555 467999
Q ss_pred HHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 709 ENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 709 eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
||+.+... .+.+. .++.++.+++.+ ....+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEE-----------LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976432 22221 122233333322 1234567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 782 AVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
+||+.+.+++.+.+.+... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999886665444 47999999999998765 8999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=305.28 Aligned_cols=182 Identities=26% Similarity=0.360 Sum_probs=151.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 789999999963 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
++|++.++ ..|++||+.++... ++.+..+.++..++.+ ..+....+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-----------LIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-----------hhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998774 68999999986321 1223333444333321 1234556899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEE
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iiv 823 (1335)
++||||||++||+.+.+.+.+.+.+...++.|+|++||+.+++..+|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999988766554568999999999999999987553
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=307.50 Aligned_cols=188 Identities=26% Similarity=0.367 Sum_probs=155.4
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----------EE
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------TA 694 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------~a 694 (1335)
+..++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 9 PPLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred cceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceE
Confidence 357999999999963 46999999999999999999999999999999999999999999999883 79
Q ss_pred EEecCCcCCC-CCHHHHhccCCCCC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 695 YVSQTAWIQT-GSIRENILFGSPMD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
|++|++.++. .|++||+.++...+ +++.++.++..++.+ ....+..+||||||||++||||++.
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-----------YEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-----------hccCChhhCCHHHHHHHHHHHHHhc
Confidence 9999987765 49999997643221 112223333333221 1245667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
+|+++||||||++||+..++.+.+.+.+...+|+|+|++|||++.+.. +|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999998887665555678999999999999865 799999864
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=337.34 Aligned_cols=411 Identities=8% Similarity=-0.041 Sum_probs=296.7
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhHhhhccccC---CCcc-hh----HHHHHHHHHHHHHHHHHHHHH
Q 000713 909 PYIQYLNQNKG---FLFFSIASLSHLTFVIGQILQNSWLAANVEN---PNVS-TL----RLIVVYLLIGFVSTLFLMSRS 977 (1335)
Q Consensus 909 ~y~~Y~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~wl~w~~~~---~~~~-~~----~~~~vy~~l~~~~~~~~~~~~ 977 (1335)
.+++|++.... +..+.+.+++.++.....+...++...-.+. .+.. .. .++.++++++++..+..++..
T Consensus 81 ~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~ 160 (659)
T TIGR00954 81 FLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLK 160 (659)
T ss_pred HHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543332 1233344444455555666666665521111 1111 11 122223333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000713 978 LSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAV-VTW 1056 (1335)
Q Consensus 978 ~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~-~~~ 1056 (1335)
.+......+..+.+|++.+++...-+++|||. ++|.+++|+++|++.+...+...+..++..++.+++.++++.. .+|
T Consensus 161 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~ 239 (659)
T TIGR00954 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGS 239 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 55666677788888888888888888999997 8899999999999999999999999999999999988887775 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHH
Q 000713 1057 QVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSF 1136 (1335)
Q Consensus 1057 ~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~ 1136 (1335)
.+.++++.+.++..++.+++.+..+++.+-.....+-..++++|+++|+.+||+|+.|++..+++.+..++..+......
T Consensus 240 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 240 VGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766667777777778887788888888888889999999999999999999999988888888888777777666
Q ss_pred HHHHHHHHHHHHHHHHH---HH-HHHHHHHhcC----CCCcCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHH
Q 000713 1137 AANEWLIQRLETLSATV---IS-SAAFCMVLLP----PGTFTPGF-IGMALSY---GLSLNSSLVMSIQNQCTLANYIIS 1204 (1335)
Q Consensus 1137 ~~~~Wl~~rl~~l~~~~---~~-~~~~~~v~~~----~~~~~~g~-~Glalsy---~l~l~~~l~~~v~~~~~le~~~~s 1204 (1335)
....|+..-.+++.... +. +.+...+... .|.++.|. ++..++| ..++...+..++....++.....+
T Consensus 320 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~ 399 (659)
T TIGR00954 320 KFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399 (659)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666554321 11 1111112221 25667664 4545554 556688889999999999999999
Q ss_pred HHHHHHhhcCCCCCC------CcccC---C-----CCCCCC------CccceEEEEEEEEEeCCCCCCccccceEEeeCC
Q 000713 1205 VERLNQYMHVPSEAP------EVVED---N-----RPPPNW------PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1264 (1335)
Q Consensus 1205 veRi~~y~~~~~E~~------~~~~~---~-----~p~~~W------P~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~G 1264 (1335)
.+||.++.+.++|.. ...++ . +++..+ ...|.|+++||+++|+.+ +++|+|+||+|++|
T Consensus 400 ~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~G 478 (659)
T TIGR00954 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSG 478 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCC
Confidence 999999986533211 00000 0 000001 134779999999999644 36999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeecccccccccHHhhH
Q 000713 1265 HKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1265 ekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|++||+|++|||||||+++|.|+++|++|+|.+|+ ++.++++||+|.+|++||+||.
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni 535 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQI 535 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHH
Confidence 99999999999999999999999999999999985 5679999999999999999983
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=304.15 Aligned_cols=183 Identities=27% Similarity=0.369 Sum_probs=154.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 4689999999999999999999999999999999999999999999876 3789
Q ss_pred EecCCcCC-CCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 696 VSQTAWIQ-TGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
++|++.++ +.|++||+.+..+ .+.++.++.++..++.+.. .....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 2344556666666664322 235678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEE
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLM 824 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl 824 (1335)
+||||||++||+.+.+.+.+.+.+...+|+|+|++||+...++ .+|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999998766555456899999999987765 56898876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=363.29 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=173.3
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
.+..|+++|++++|++. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999642 257999999999999999999999999999999999999999999999882
Q ss_pred -EEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 -TAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 -~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+|||||++.++ +.|++||+.+... ..++ +.++.++.++|.+. .+++..+||||||||++|
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHH
Confidence 79999997665 6799999976321 1221 22334455555332 235667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+|++|||||+|||+..++.+++.+.+...+|+|||++||++++++. ||+|++|++|+++..|+++++.++
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998776655679999999999999875 899999999999999999998653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=349.98 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=167.1
Q ss_pred ccEEEEeeEEEecCC--------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------
Q 000713 626 RAISIKSASFSWEES--------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------ 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~--------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------ 691 (1335)
..|+++|++++|+.. +++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 469999999999531 12469999999999999999999999999999999999985 899999987
Q ss_pred ----------eEEEEecCCc--C-CCCCHHHHhccCCC-----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 692 ----------KTAYVSQTAW--I-QTGSIRENILFGSP-----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 692 ----------~~ayv~Q~~~--i-~~~Tv~eNIlfg~~-----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+++|++|++. + .+.|++||+.++.. .+. ++..+.++..++..+ ....+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE----------TRHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 2799999972 4 45799999987521 111 122233333333211 12456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCC
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDG 827 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G 827 (1335)
+.+|||||||||+||||++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|+||||++++. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 7789999999999999999999999999999999999999999877665443 899999999999876 48999999999
Q ss_pred eEEEecChHHHHhc
Q 000713 828 EILRAAPYHQLLAS 841 (1335)
Q Consensus 828 ~i~~~g~~~~l~~~ 841 (1335)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999998653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=350.38 Aligned_cols=207 Identities=21% Similarity=0.354 Sum_probs=165.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-CCCcEEEEcCe------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-HTQGTIQVYGK------------ 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-~~~G~i~v~g~------------ 692 (1335)
..|+++|++++|+..+++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 46999999999953223569999999999999999999999999999999999998 59999999772
Q ss_pred --EEEEecCC---cC-CCCCHHHHhccCCC--C------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 --TAYVSQTA---WI-QTGSIRENILFGSP--M------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 --~ayv~Q~~---~i-~~~Tv~eNIlfg~~--~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++ .+ .+.|+.||+.++.. + +....++ ...+-++.+...+ .....+..+||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LSgG~k 411 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELK-----TILESIQRLKVKT-ASPELAIARLSGGNQ 411 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHH-----HHHHHHHhcCccC-CCcccccccCCHHHH
Confidence 79999996 34 46799999987521 1 1111000 0111222222110 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
|||+||||++.+|+++||||||++||+.+.+.+++.+.....+|+|||++|||++++.. ||++++|++|+++..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999988766655679999999999998864 89999999999999998877
Q ss_pred H
Q 000713 838 L 838 (1335)
Q Consensus 838 l 838 (1335)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=284.96 Aligned_cols=179 Identities=31% Similarity=0.408 Sum_probs=155.4
Q ss_pred CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcCCCCCHH
Q 000713 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTGSIR 708 (1335)
Q Consensus 642 ~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i~~~Tv~ 708 (1335)
+.++|+++||++.+||.++|+||+|||||||+++++-+++|++|++.+.|+ ++||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 468999999999999999999999999999999999999999999999984 6899999999999999
Q ss_pred HHhccCCC-----CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000713 709 ENILFGSP-----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783 (1335)
Q Consensus 709 eNIlfg~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saL 783 (1335)
||+.|.-. .|+......++..++ +++.+.++..+||||+|||++|+|-|.--|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99999632 344444444444333 345667788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-cCCCEEEEEccCCCc-cccCCeEEEEeCCeEE
Q 000713 784 DAHTASSLFNDYVMEA-LSGKVVLLVTHQVDF-LPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~ 830 (1335)
|+++.+.|-+.+.+.. .++..++.||||.+. ...+|+++-+..|.+-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999877666654 568899999999988 7889999999998863
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=346.89 Aligned_cols=209 Identities=23% Similarity=0.366 Sum_probs=167.2
Q ss_pred ccEEEEeeEEEecC--CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc-C-----------
Q 000713 626 RAISIKSASFSWEE--SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY-G----------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~--~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~-g----------- 691 (1335)
..++++|++++|++ .+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 46999999999953 122469999999999999999999999999999999999999999999985 3
Q ss_pred --------eEEEEecCCcCC-CCCHHHHhccCCC--CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 --------KTAYVSQTAWIQ-TGSIRENILFGSP--MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~-~~Tv~eNIlfg~~--~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++ +.|++||+.++.. ...+ +..+.++.+++... ........++.+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 279999998665 4699999976321 1111 12223333332110 0001235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~ 834 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|+||||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999887765544 38999999999999864 89999999999999999
Q ss_pred hHHHHh
Q 000713 835 YHQLLA 840 (1335)
Q Consensus 835 ~~~l~~ 840 (1335)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=303.16 Aligned_cols=185 Identities=26% Similarity=0.345 Sum_probs=155.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----------EEEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------TAYV 696 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------~ayv 696 (1335)
.++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|+
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 4889999999963 46899999999999999999999999999999999999999999999883 5899
Q ss_pred ecCCcC-CCCCHHHHhccCCCC---ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 697 SQTAWI-QTGSIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 697 ~Q~~~i-~~~Tv~eNIlfg~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++.+ ++.|++||+.+.... ++++..+.++..++.+.. ..+..+||||||||++||||++++|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-----------HLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------cCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 987654 578999999764322 233445556666554322 23456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
++||||||++||+.+.+++.+.+.+...+|+|+|++||++++++. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999987766555568999999999999988 99988754
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=294.35 Aligned_cols=201 Identities=27% Similarity=0.439 Sum_probs=168.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
+|+++|++++|++ +.+++|+|++|++|.+++++||||+||||||+++.+++++++|+|.++|. +
T Consensus 1 MI~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 4789999999964 68999999999999999999999999999999999999999999999995 3
Q ss_pred EEEecCCcCC-CCCHHHHhccCC-CCCh--------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGS-PMDS--------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~-~~~~--------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+..-|+..+. ..||||-+.||+ ||.+ ...+++++-..|.+ + -++.-.+||||||||.-+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l----------~dryLd~LSGGQrQRAfI 146 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-L----------SDRYLDELSGGQRQRAFI 146 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-h----------HHHhHHhcccchhhhhhh
Confidence 5666776664 569999999996 3432 22333333332211 1 123445799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|..+++|.|.++||||+++||......+++.+.+...+ |||+++|-||++|+.. +|+|+.|+||+++.+|+++|+.+.
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999887765543 9999999999999874 799999999999999999999764
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=293.20 Aligned_cols=161 Identities=29% Similarity=0.449 Sum_probs=132.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCH
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv 707 (1335)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..- . ..+.
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~--~------~~~~ 69 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV--S------FASP 69 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC--C------cCCH
Confidence 468999999964 4799999999999999999999999999999999999999999999988421 0 0000
Q ss_pred HHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 000713 708 RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 708 ~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~ 787 (1335)
++ .+. ...+ ..+ +||||||||++||||++++|+++||||||++||+.+
T Consensus 70 ~~-----------~~~---~~i~------~~~------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 70 RD-----------ARR---AGIA------MVY------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred HH-----------HHh---cCeE------EEE------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 00 000 0000 000 199999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 788 ASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 788 ~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
++++.+.+.+...+++|+|++||+++.+.. +|++++|++|++++
T Consensus 118 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 118 VERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999988776555568999999999998765 89999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=300.30 Aligned_cols=458 Identities=20% Similarity=0.219 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000713 364 ESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEI---MNYVTVDAYRIGEFPF-WFHQIWTTSVQLC 439 (1335)
Q Consensus 364 ~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~I---vNlms~D~~ri~~~~~-~~h~~w~~plqi~ 439 (1335)
.++...-..|...-+.+|.|.-+..-+|++=++-...-+-.+..+.| =.+++.|++|+..... ....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 34444556777888999999999999999888643211111111122 2478899999876544 3345556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHH
Q 000713 440 IALIILFHAVGLATIAALVV-ITITVLCNTPLAKLQHKFQT-KLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEI 517 (1335)
Q Consensus 440 lal~lL~~~lG~a~l~gl~v-~vl~~~~~~~~~~~~~~~q~-~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~ 517 (1335)
.-.+.+|...||...+.+.. .++-..+|..+.+-+.+... +....-|-|-+. +++..|-..|-+|+-+..-...++.
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~ 293 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQ 293 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe-eeeeecchhhhhhccCchHHHHHHH
Confidence 88888888888743333221 22233334333332222222 222233444443 3566777888999887655555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH---HHhc---CcccHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000713 518 LRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGAC---YFLN---VPLYASNVFTFVA----TLRLVQDPIRIIPDV 587 (1335)
Q Consensus 518 ~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~---~l~~---~~Lt~~~vFt~la----lf~~L~~pl~~lp~~ 587 (1335)
.=+.=++.+++.........++-...-.+..++.+.+. ++.+ ..++++..++-++ .|.-|...+..+...
T Consensus 294 ~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~ 373 (659)
T KOG0060|consen 294 RFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDL 373 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444333332222221111122222221111 1112 3466766555442 233334445555555
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCC-------------cccc------cccCCCCCCcccEEEEeeEEEecCCCCCCcee
Q 000713 588 IGVFIQANVAFSRIVNFLEA-PELQ-------------SMNI------RQKGNIENVNRAISIKSASFSWEESSSKPTMR 647 (1335)
Q Consensus 588 i~~~~qa~vS~~RI~~fL~~-~e~~-------------~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~ 647 (1335)
-..+.+-..-..||.++.+. ++.. .... +..+...+.++.|+++++++.-|++ +..+.+
T Consensus 374 ~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie 452 (659)
T KOG0060|consen 374 SRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIE 452 (659)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Cceeee
Confidence 55566666667888888752 1111 0000 0011112356899999999998775 445778
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--C---eEEEEecCCcCCCCCHHHHhccCC-------
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--G---KTAYVSQTAWIQTGSIRENILFGS------- 715 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g---~~ayv~Q~~~i~~~Tv~eNIlfg~------- 715 (1335)
|+||+|+.|+-+.|+||||||||||++.+.|+.+..+|++... | .+-|+||.|....||.||.+.+..
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccc
Confidence 8999999999999999999999999999999999999999763 3 378999999999999999999972
Q ss_pred -CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000713 716 -PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794 (1335)
Q Consensus 716 -~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~ 794 (1335)
..++++..+.++..+|.+-++....-|+...-+-...||+|+|||+++||-+|++|++-+|||.|||||.++...+++.
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~ 612 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRK 612 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHH
Confidence 2355678888888888887777765555556677889999999999999999999999999999999999999999886
Q ss_pred HHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 795 YVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 795 ~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|. ..|.|.|-|.|+-+.-+.-|.++-|+.
T Consensus 613 ~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 613 CR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 64 358999999999998888899999976
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=300.08 Aligned_cols=178 Identities=31% Similarity=0.471 Sum_probs=141.7
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCHH
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIR 708 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~ 708 (1335)
+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..- .+ ......+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~--~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL--AS---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC--Cc---CCHHHHH
Confidence 47899999964 4699999999999999999999999999999999999999999999998521 00 0000122
Q ss_pred HHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 709 eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
..+.+- .++++.+++.+.+ ..++.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222211 1155556655433 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 789 SSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 789 ~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
+.+.+.+.+...+ ++|+|++||+++++. .+|++++|++|++.+.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9888766554444 789999999999975 58999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=298.81 Aligned_cols=180 Identities=25% Similarity=0.346 Sum_probs=149.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------EEEEec
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---------TAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~---------~ayv~Q 698 (1335)
++++|++++|++ +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. ++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 789999999953 3444 599999999999999999999999999999999999999999883 689999
Q ss_pred CCcC-CCCCHHHHhccCCCC--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 699 TAWI-QTGSIRENILFGSPM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 699 ~~~i-~~~Tv~eNIlfg~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
++.+ ++.|++||+.+.... ..++..++++.+++.+. ..+++.+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 22344455555555432 234677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|.+.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999998888766544457899999999999999998763
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=309.50 Aligned_cols=192 Identities=23% Similarity=0.323 Sum_probs=154.3
Q ss_pred EEecCCCCCCceeeeeeEee-----CCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-eEEEEecCCc-CCCCCH
Q 000713 635 FSWEESSSKPTMRNISLEVR-----PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-KTAYVSQTAW-IQTGSI 707 (1335)
Q Consensus 635 ~~~~~~~~~~~L~~isl~i~-----~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-~~ayv~Q~~~-i~~~Tv 707 (1335)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 457642 357888888886 7999999999999999999999999999999999999 8999999986 467899
Q ss_pred HHHhccCCC-C--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 000713 708 RENILFGSP-M--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784 (1335)
Q Consensus 708 ~eNIlfg~~-~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD 784 (1335)
+||+.+... . ......++++.+++.+. ...++.+||||||||++||||++.+|++|||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975322 1 12233455555555332 235667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEE--EecChHHHH
Q 000713 785 AHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL--RAAPYHQLL 839 (1335)
Q Consensus 785 ~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~--~~g~~~~l~ 839 (1335)
+.++..+.+.+.+... .++|+|+||||++.+.. ||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999988876655443 48999999999999874 8999999775443 456666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=306.21 Aligned_cols=187 Identities=26% Similarity=0.358 Sum_probs=150.0
Q ss_pred EEEEeeEEEecCC---C-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--C----------
Q 000713 628 ISIKSASFSWEES---S-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--G---------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~---~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g---------- 691 (1335)
|+++|++++|+.. + .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2468999999999999999999999999999999999999999999986 3
Q ss_pred ---------eEEEEecCCcCC-CCCHHHHhccCC---CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 ---------KTAYVSQTAWIQ-TGSIRENILFGS---PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 ---------~~ayv~Q~~~i~-~~Tv~eNIlfg~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
+++|++|++.++ +.|++||+.++. ..+.+ +..+.++..++.+. ....++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER----------LWHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh----------hhhCCcccCC
Confidence 268999998765 569999997632 12211 11222222222111 1134577899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEE
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLM 824 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl 824 (1335)
||||||++||||++.+|+++||||||++||+++.+.+.+.+.+...+|+|+|++||+.+++. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999998876655556899999999999886 58999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=302.94 Aligned_cols=358 Identities=18% Similarity=0.222 Sum_probs=250.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHH
Q 000713 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI 1035 (1335)
Q Consensus 956 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~ 1035 (1335)
...+..|.+..+++.+|..++.+.++....++-+....+.+++.+...++||.+-.+|.+-++.-+-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999988887766665555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHccccchHHHHHHHHHcchHHHHhccc
Q 000713 1036 FAVGATTNACSNLGVLA-VVTWQVLFVSIPVIFLAIRLQRYYFVTAKE-LMRLNGTTKSLVANHLAESIAGAMTIRAFEE 1113 (1335)
Q Consensus 1036 ~~~~~~~~~~~~l~vi~-~~~~~~~~~~ipl~~~~~~~q~~y~~tsre-l~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~ 1113 (1335)
.++..++.+......+. -..+.+.++++-....|..+ -.+...-|. .|+--..+....-+..-|++.+--+|++|+.
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~-Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF-TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee-EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 55444444433332222 22344433333222222111 111111111 1122222334445667899999999999999
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc----CCCCcCHHHHHHHHHHHHHHHHHH
Q 000713 1114 EDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC-MVLL----PPGTFTPGFIGMALSYGLSLNSSL 1188 (1335)
Q Consensus 1114 e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~-~v~~----~~~~~~~g~~Glalsy~l~l~~~l 1188 (1335)
|++=.+++...+.+..++.... .+|+++ +++....++.+...+ +++. ..+.++.|..-+.-+...++...+
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~---~~sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l 308 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKY---SSSLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPL 308 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH---HhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHH
Confidence 9998888888887766654433 344443 445554444333222 2222 133556666767777788888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEE
Q 000713 1189 VMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIG 1268 (1335)
Q Consensus 1189 ~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVG 1268 (1335)
+.+-..++++-.++.-.+-.+...+. +. .+.+. |++--+..|.|+|+||++.|.|+. +||||+||+|++|||||
T Consensus 309 ~~Lg~vyr~~~q~l~Dm~~~~~l~~~--~~--~i~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVa 382 (591)
T KOG0057|consen 309 NFLGSVYRELRQALTDMRTLFILLEV--DE--DIQEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVA 382 (591)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh--hh--hhhhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEE
Confidence 88888888887777766655544321 11 11111 222223457899999999998765 59999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1269 IVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||++||||||++++||||+| .+|+|+|||+||+. |+.|++||||..||++||-+|
T Consensus 383 IvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 999999999999999999999 99999999999985 678999999999999999875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=275.11 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
+|.++|++|.|+. ..+|.||+|+-+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999974 4799999999999999999999999999999999888889999999876
Q ss_pred ----eEEEEecCCcC-CCCCHHHHhccCC----CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 ----KTAYVSQTAWI-QTGSIRENILFGS----PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 ----~~ayv~Q~~~i-~~~Tv~eNIlfg~----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|.|+|+-.+ +..||.||+.-.. .+.++ +..-++..+.+.+..-+..| +.+..|||||+|||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~--qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqrva 151 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD--QALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHH--HHHHHHHHHHHHhccccccc-----cCceecccchhhhHH
Confidence 36999998765 5679999987421 01111 11112222333333333333 456689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||||+.+|+++|+||||+||||+...++.+.+.+....|.|-++|||.+++.++ +.+|+.|++|+|++.|+.+-.-+
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 9999999999999999999999999999988666666679999999999999876 69999999999999999876643
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=305.74 Aligned_cols=179 Identities=31% Similarity=0.492 Sum_probs=148.0
Q ss_pred eEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCCcC---CCCCHHHHhccCCC---
Q 000713 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTAWI---QTGSIRENILFGSP--- 716 (1335)
Q Consensus 651 l~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~~i---~~~Tv~eNIlfg~~--- 716 (1335)
|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ ++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999984 8999999854 35799999987521
Q ss_pred --C--C-h---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 717 --M--D-S---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 717 --~--~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
. . . ++..+.++.+++.+ ....+..+||||||||++||||++++|+++||||||++||+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTE-----------LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 1 1 12223333333321 22346678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 789 SSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 789 ~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+.+.+.+...+|+|+|++||+++++. .||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999877665556899999999999876 48999999 8999999999998653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=298.12 Aligned_cols=180 Identities=25% Similarity=0.341 Sum_probs=147.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468999999964 46999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
++|++.++ +.|++||+.+.... ++.+..+.++..++.+.+ ..+..+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-----------DLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-----------cCChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999764322 122345555555554332 3456789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
++++|||||++||+.+.+.+.+.+.+...+|+|+|++||+...+. +++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999998888766655566899999999985443 25544
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=340.75 Aligned_cols=200 Identities=23% Similarity=0.400 Sum_probs=166.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCc--
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW-- 701 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~-- 701 (1335)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 47999999999964 4699999999999999999999999999999999999999999999987 6899999974
Q ss_pred CC-CCCHHHHhccCC--CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 702 IQ-TGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 702 i~-~~Tv~eNIlfg~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
++ +.|++||+.+.. ..++++.++.++..++..+ ....++.+||||||||++||||++.+|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986421 1123334455555554211 1235677999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHHHhc
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQLLAS 841 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l~~~ 841 (1335)
||++||+.+.+.+.+.+.+ . +.|+|+||||++++.. ||+|++|++|+++ ..|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999865 8999999999998 78998887643
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=301.72 Aligned_cols=191 Identities=26% Similarity=0.379 Sum_probs=159.8
Q ss_pred ccEEEEeeEEEecCCCC------CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecC
Q 000713 626 RAISIKSASFSWEESSS------KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT 699 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~------~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~ 699 (1335)
..++++|+++.|+.... ..+++||||+|++||.++|||+||||||||-++|+|+++|++|+|.++|+...-
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh---
Confidence 35889999999975321 368999999999999999999999999999999999999999999999864110
Q ss_pred CcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 700 AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 700 ~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
.+ ..-..+++.+.++..++.++. ..+.+++|||||+|||+||||+.-+|+++++|||
T Consensus 80 -----~~--------~~~~~~~v~elL~~Vgl~~~~----------~~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 80 -----LS--------KEERRERVLELLEKVGLPEEF----------LYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred -----cc--------hhHHHHHHHHHHHHhCCCHHH----------hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 00 111234566677777665443 3467889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 780 FSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+|+||..++.++.+.+.+.. ..|-|.+++|||++.+.+ +|+|.||..|+|++.|+.+++..+.
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999998666543 348999999999999986 6999999999999999999998753
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=342.71 Aligned_cols=199 Identities=21% Similarity=0.390 Sum_probs=160.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 4699999998652 389999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCC----cCCCCCHHHHhccCCCC------------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 KTAYVSQTA----WIQTGSIRENILFGSPM------------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 ~~ayv~Q~~----~i~~~Tv~eNIlfg~~~------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
+++|++|++ .+.+.|++||+.++... .....+ + ...+-++.+... .........+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~-~~~~~~~~~~LSg 412 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ---R--TAENQRELLALK-CHSVNQNITELSG 412 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH---H--HHHHHHHhcCCC-CCCccCccccCCh
Confidence 269999984 33467999999876321 111000 0 011222332211 0124567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++. .||++++|++|+++..++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999876655556899999999999875 589999999999998876
Q ss_pred h
Q 000713 835 Y 835 (1335)
Q Consensus 835 ~ 835 (1335)
.
T Consensus 493 ~ 493 (510)
T PRK09700 493 N 493 (510)
T ss_pred C
Confidence 5
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=294.84 Aligned_cols=205 Identities=24% Similarity=0.416 Sum_probs=174.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------eEEEEe
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTAYVS 697 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------~~ayv~ 697 (1335)
++++++++++|++ +.+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 5889999999964 6799999999999999999999999999999999999999999999999 799999
Q ss_pred cCCcC-CCCCHHHHhccCCC---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 698 QTAWI-QTGSIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 698 Q~~~i-~~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
.+--+ +..||.|.+.|-.. +.....++- +...++.+.-.+ .-.++..+||-|.+|+|++--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99765 67899999987433 333322221 222333333222 12467789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
++||||||||||.+.+.+-+.+++...+|+|||+.||.++.++. ||+++.|++|+.+.+|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999988877777888899999999999999875 999999999999999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=341.86 Aligned_cols=206 Identities=19% Similarity=0.306 Sum_probs=162.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-CCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-TQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-~~G~i~v~g------------- 691 (1335)
..++++|++++|+.++++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 369999999988432234699999999999999999999999999999999999985 899999977
Q ss_pred -eEEEEecCC----cCCCCCHHHHhccCCC--C------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -KTAYVSQTA----WIQTGSIRENILFGSP--M------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -~~ayv~Q~~----~i~~~Tv~eNIlfg~~--~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
+++|++|++ .+++.|++||+.++.. . +....++ ...+-++.+...+ .....++.+||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQ-----IIGSAIQRLKVKT-ASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHH-----HHHHHHHhcCccC-CCccCccccCCHHHH
Confidence 269999995 3456799999987531 1 1110000 0111122222110 113456778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+++.+.....+|+|+|++|||++++. .||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999998866655567899999999999986 489999999999998775543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=296.17 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=133.6
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------eEEEEecCC--cCCCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------KTAYVSQTA--WIQTG 705 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------~~ayv~Q~~--~i~~~ 705 (1335)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4699999999999999999999999999999999999999999999876 268999998 46678
Q ss_pred CHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 706 SIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 706 Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
|++||+.++.. .+.+ +.++.++..++.+ ...+++.+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-----------LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 2222 2233334334332 2234667899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~ 814 (1335)
||++||+.+.+.+.+.+.+...+|+|+|++||++++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999988766555568999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=296.62 Aligned_cols=184 Identities=24% Similarity=0.402 Sum_probs=160.2
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------------EEEEecCCcCC-CCCHHH
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------------TAYVSQTAWIQ-TGSIRE 709 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------------~ayv~Q~~~i~-~~Tv~e 709 (1335)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++|+ +|||+|++-+| ..||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688888886799999999999999999999999999999999983 79999999876 669999
Q ss_pred HhccCCCCC-hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 710 NILFGSPMD-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 710 NIlfg~~~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
|+.||.... ....+++++-.++.+-++. ++.+||||+||||+|+|||..+|+++|+|||+|+||..-.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-----------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-----------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhh-----------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999997654 4566777777676666654 5568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 789 SSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 789 ~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
++++-.+.+...+ +.-+++|||.++++. .||+|++|++|++...|+.++++++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9998765544433 678999999998864 58999999999999999999998653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=341.87 Aligned_cols=191 Identities=29% Similarity=0.453 Sum_probs=159.1
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC--CcEEEEcCe---------EEEEecCCcCC-CCCHHHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--QGTIQVYGK---------TAYVSQTAWIQ-TGSIREN 710 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~--~G~i~v~g~---------~ayv~Q~~~i~-~~Tv~eN 710 (1335)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|+ ++||+|++.++ ..||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 56999999999999999999999999999999999999885 899999984 79999998876 5699999
Q ss_pred hccCCC------CChHH----HHHHHHHhccHHHHhhCCCCCCccccC-CCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 711 ILFGSP------MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGE-RGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 711 Ilfg~~------~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
+.|+.. .++++ .+++++..+| ++..+|.+|+ .+.+||||||||++||||++++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 987531 12211 2223333322 2233566765 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-c-ccCCeEEEEeCCeEEEecChHHHHh
Q 000713 780 FSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-L-PAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l-~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|+|||+.++.++.+.+.+...+|+|+|++||+++. + ..+|+|++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999998776655579999999999984 4 5689999999999999999998853
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=336.09 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=161.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 256 ~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 256 VRLRLDGLKG-------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred cEEEEecccc-------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 3588899873 14899999999999999999999999999999999999999999999863
Q ss_pred -EEEEecCC----cCCCCCHHHHhccCCCC---------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -TAYVSQTA----WIQTGSIRENILFGSPM---------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -~ayv~Q~~----~i~~~Tv~eNIlfg~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++ ...+.|+.||+.++... +....++. ..+-++.+... ......+..+||||||
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~-~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAEN-----ADRFIRSLNIK-TPSREQLIMNLSGGNQ 402 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHH-----HHHHHHhcCcc-cCCccCccccCCHHHH
Confidence 68999996 34568999999875321 11110010 11122222211 1123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+.+.+++.+.+....|.|+|+||||++++. .||++++|++|++++.|+.++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999998866665566899999999999986 589999999999999998876
Q ss_pred HH
Q 000713 838 LL 839 (1335)
Q Consensus 838 l~ 839 (1335)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 53
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=335.34 Aligned_cols=199 Identities=22% Similarity=0.391 Sum_probs=160.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred cEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 3688999874 369999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCC---cC-CCCCHHHHhccCCC---------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 KTAYVSQTA---WI-QTGSIRENILFGSP---------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ~~ayv~Q~~---~i-~~~Tv~eNIlfg~~---------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++ .+ .+.|++||+.++.. .+....++ ...+-++.+... ....++++.+||||||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LSgGek 401 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ-----AVSDFIRLFNIK-TPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHH-----HHHHHHHhcCCC-CCCccCchhhCCHHHH
Confidence 279999996 23 46799999987421 11111010 011112222211 0123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999877665556899999999999876 489999999999999998876
Q ss_pred H
Q 000713 838 L 838 (1335)
Q Consensus 838 l 838 (1335)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=299.11 Aligned_cols=207 Identities=28% Similarity=0.405 Sum_probs=171.6
Q ss_pred cccEEEEeeEEEecCCC--------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----
Q 000713 625 NRAISIKSASFSWEESS--------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~--------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~---- 692 (1335)
...++.+|+...|+-.+ ...+++++||++++||.++|||++|||||||-.+|++++++. |+|.++|+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 45688999998886432 134789999999999999999999999999999999999886 99999883
Q ss_pred ------------EEEEecCCc---CCCCCHHHHhccCCCC------ChHHHHH---HHHHhccHHHHhhCCCCCCccccC
Q 000713 693 ------------TAYVSQTAW---IQTGSIRENILFGSPM------DSHQYQE---TLERCSLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 693 ------------~ayv~Q~~~---i~~~Tv~eNIlfg~~~------~~~~~~~---~~~~~~l~~dl~~l~~gd~t~ig~ 748 (1335)
+-.|+|+|+ -+..||.+-|.-|... +.++-++ +++..+|++ .-..+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhhc
Confidence 578999996 2567999988766322 2333343 344444433 23457
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
.++++||||||||+||||++-+|++++|||||||||..++.++.+.+.+.. +.|-+-+++|||+..++. ||+|+||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 889999999999999999999999999999999999999999998766543 358899999999999875 899999999
Q ss_pred CeEEEecChHHHHhcc
Q 000713 827 GEILRAAPYHQLLASS 842 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~~ 842 (1335)
|+|+|+|+.++++++.
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999999999998764
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=276.27 Aligned_cols=141 Identities=33% Similarity=0.561 Sum_probs=129.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~ 705 (1335)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468999999964 3699999999999999999999999999999999999999999999998 4789888
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~ 785 (1335)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 786 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
.+...+.+.+.+ . ++|+|++||+++.+.. +|++++|++|+
T Consensus 104 ~~~~~l~~~l~~-~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKE-Y--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHH-c--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999988875543 2 5799999999999865 79999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=331.43 Aligned_cols=201 Identities=24% Similarity=0.374 Sum_probs=162.9
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC-c
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA-W 701 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~-~ 701 (1335)
+..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++||++|++ .
T Consensus 322 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 398 (556)
T PRK11819 322 DKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA 398 (556)
T ss_pred CeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence 357999999999963 4699999999999999999999999999999999999999999999966 589999996 4
Q ss_pred C-CCCCHHHHhccCCCCC-----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 702 I-QTGSIRENILFGSPMD-----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 702 i-~~~Tv~eNIlfg~~~~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
+ .+.|++||+.++.... ..+.++.++..++..+ ....++.+||||||||++||||++.+|+++|
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4 4569999998764211 1122233333333111 1245677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC-CeEE-EecChHHHHhc
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD-GEIL-RAAPYHQLLAS 841 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~-G~i~-~~g~~~~l~~~ 841 (1335)
|||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEF--P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhC--C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999998755432 3 489999999998865 899999986 7876 57888887654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=296.20 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=147.9
Q ss_pred ceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE-EcCeEEEEecCCcCCC-CCHHHHhccCCC---CCh
Q 000713 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-VYGKTAYVSQTAWIQT-GSIRENILFGSP---MDS 719 (1335)
Q Consensus 645 ~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~-v~g~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~ 719 (1335)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|....+.|++.+++ .|++||+.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 7876555566666654 599999986422 222
Q ss_pred HHHHHHH-HHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000713 720 HQYQETL-ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798 (1335)
Q Consensus 720 ~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~ 798 (1335)
++..+.+ +..++ +.. ...+..+||||||||++||||++.+|+++|||||++++|+.+++.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~l-------~~~----~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQL-------EQC----YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhCh-------hHH----hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 2222211 11111 111 23456689999999999999999999999999999999999999888765443
Q ss_pred HcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 799 ALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 799 ~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
.+++|+|++||+++.+. .||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 34689999999999986 589999999999999999888753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=331.34 Aligned_cols=200 Identities=24% Similarity=0.379 Sum_probs=161.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCc-
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW- 701 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~- 701 (1335)
+..++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++||++|++.
T Consensus 320 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 396 (552)
T TIGR03719 320 DKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396 (552)
T ss_pred CeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence 357999999999963 4699999999999999999999999999999999999999999999965 5899999863
Q ss_pred C-CCCCHHHHhccCCCC---C--hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 702 I-QTGSIRENILFGSPM---D--SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 702 i-~~~Tv~eNIlfg~~~---~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
+ .+.|++||+.++... . +.+.++.++..++..+ ....++.+||||||||++||||++.+|+++|
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 4 457999999886432 1 1122233333333211 1245677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC-CeEE-EecChHHHHh
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD-GEIL-RAAPYHQLLA 840 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~-G~i~-~~g~~~~l~~ 840 (1335)
|||||++||+.+.+.+.+.+.+. . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999998755432 2 489999999999875 899999997 5876 5688876643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=332.93 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=159.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 4699999983 2599999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCC----cCCCCCHHHHhccCC----CC--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 -TAYVSQTA----WIQTGSIRENILFGS----PM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 -~ayv~Q~~----~i~~~Tv~eNIlfg~----~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|+||++ ...+.|+.||+.... .. .....++ ...+-++.+... ......+..+||||||||+
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA-----VLERYRRALNIK-FNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH-----HHHHHHHHcCCC-CCCccCccccCCcHHHHHH
Confidence 79999985 334569999985320 11 1110110 011112222111 0124567789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++.. ||++++|++|+++..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999988766655568999999999999865 8999999999999999887764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=329.38 Aligned_cols=195 Identities=21% Similarity=0.270 Sum_probs=162.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcC-C
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI-Q 703 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i-~ 703 (1335)
...++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++-+++|+||++.. +
T Consensus 338 ~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCC
Confidence 346999999999953 35999999999999999999999999999999999999999999988789999999754 5
Q ss_pred CCCHHHHhccCCC-CC-hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 704 TGSIRENILFGSP-MD-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~-~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
+.|++||+.++.. +. ....+++++..++.+. ......+|||||||||+||||++++|++|||||||+
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 7799999987532 21 2233455666555432 234667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 782 AVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
+||+.++..+.+.+.+... .|+|+|+||||++++.. ||++++|++ ++...|+.
T Consensus 483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999876665544 48999999999999864 899999965 87777763
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=333.66 Aligned_cols=199 Identities=23% Similarity=0.405 Sum_probs=162.1
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC--
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA-- 700 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~-- 700 (1335)
+..|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 457999999999963 4699999999999999999999999999999999999999999999964 589999975
Q ss_pred cC-CCCCHHHHhcc-CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 701 WI-QTGSIRENILF-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 701 ~i-~~~Tv~eNIlf-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
.+ .+.|+.+++.. .......+.++.++.+++..+ ....++.+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 24588888742 111222333444554444221 1234667899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHHH
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQLL 839 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l~ 839 (1335)
||++||+.+...+.+.+.. . . .|||+||||++++.. ||+|++|++|+++ ..|++++..
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999988875543 3 3 499999999999865 8999999999997 789999874
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=310.99 Aligned_cols=171 Identities=29% Similarity=0.382 Sum_probs=141.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEEecCCcCCC-CCHHHHhccCCCC---ChH----H
Q 000713 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYVSQTAWIQT-GSIRENILFGSPM---DSH----Q 721 (1335)
Q Consensus 661 IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv~Q~~~i~~-~Tv~eNIlfg~~~---~~~----~ 721 (1335)
|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++. .|++||+.|+... +.. +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 3799999988764 6999999986432 111 2
Q ss_pred HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL- 800 (1335)
Q Consensus 722 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~- 800 (1335)
.+++++..++.+ ...+++.+|||||||||+||||++++|+++||||||++||+.+++.+.+.+.+...
T Consensus 81 ~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEE-----------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcc-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 233333333321 23456789999999999999999999999999999999999999999887765544
Q ss_pred CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 801 SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 801 ~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.|+|+|+||||++++. .||+|++|++|++++.|+++++.+..
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 3899999999999876 48999999999999999999997643
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=333.30 Aligned_cols=202 Identities=29% Similarity=0.430 Sum_probs=168.8
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
.++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 689999999996422 246999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCCcCCC-CCHHHHhccCCCC---C-hH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 ----TAYVSQTAWIQT-GSIRENILFGSPM---D-SH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 ----~ayv~Q~~~i~~-~Tv~eNIlfg~~~---~-~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++|++|++.+++ .|+.||+.++... + .+ +..+.++.+++.+ .++..+.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-----------RVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhcCCcccCCHHHHHH
Confidence 689999998764 6999999864211 1 11 2223333333322 3445667999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999999876655445689999999999988889999999999999999988774
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=328.15 Aligned_cols=195 Identities=27% Similarity=0.437 Sum_probs=156.0
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-CCcEEEEcCe-----------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-TQGTIQVYGK----------- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-~~G~i~v~g~----------- 692 (1335)
+..++++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|+
T Consensus 258 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 258 EPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 347999999999963 4699999999999999999999999999999999998876 6999998762
Q ss_pred ---EEEEecCCcCC---CCCHHHHhccCCC--------CCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 693 ---TAYVSQTAWIQ---TGSIRENILFGSP--------MDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 693 ---~ayv~Q~~~i~---~~Tv~eNIlfg~~--------~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
++|++|++.++ ..++++++.++.. ... ++.++.++.+++.++ ....++.+|||
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 404 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSW 404 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCH
Confidence 79999987542 2477777754310 111 123344444443221 12356678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEccCCCcccc--CCeEEEEeCCeEEEe
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG-KVVLLVTHQVDFLPA--FDSVLLMSDGEILRA 832 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~-~TvIlvTH~~~~l~~--~D~iivl~~G~i~~~ 832 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+...++ .|+|++|||++++.. +|++++|++|+|++.
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999998776655555 469999999999864 699999999998764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=330.68 Aligned_cols=197 Identities=25% Similarity=0.411 Sum_probs=160.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~ 703 (1335)
..++++|++++|++ .+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ++||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 57999999999953 23689999999999999999999999999999999999999999999876 5899999863 3
Q ss_pred CCCHHHHhcc--C---CCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 704 TGSIRENILF--G---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 704 ~~Tv~eNIlf--g---~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
..++.+|... . ....+++.+++++.+++..+. ...++.+||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3355555331 1 122344556666666664322 124567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHH
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQL 838 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l 838 (1335)
||++||+.+...+.+.+... + .|+|+||||++++.. ||++++|++|+++ ..|++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999998887655432 3 499999999999875 8999999999998 67888765
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=326.55 Aligned_cols=201 Identities=20% Similarity=0.334 Sum_probs=158.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..|+++|+++.+ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 469999999873 35899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCc----CCCCCHHHHhccC-----CC----CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -TAYVSQTAW----IQTGSIRENILFG-----SP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -~ayv~Q~~~----i~~~Tv~eNIlfg-----~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++. ..+.|+.+|+.+. .. .+....++ ...+.++.+..++. ....++.+||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~ 397 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQ 397 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHH
Confidence 689999852 3456777774332 11 11111111 11122233322111 24567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+|+||||||++||+.+++.+++.+.....+|+|+|++|||++++. .||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999866655557999999999999886 589999999999998776643
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=330.54 Aligned_cols=199 Identities=24% Similarity=0.397 Sum_probs=160.5
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC--
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA-- 700 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~-- 700 (1335)
+..|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++. ++||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 457999999999963 4699999999999999999999999999999999999999999999843 589999985
Q ss_pred cCCCCCHHHHhccCCC-C--C--hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 701 WIQTGSIRENILFGSP-M--D--SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 701 ~i~~~Tv~eNIlfg~~-~--~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
...+.|+.||+.++.. . + ..+..+.++.+++..+ ....+..+||||||||++||||++.+|+++|
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3346699999987532 1 1 1122233333333211 1234567899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe-CCeEEE-ecChHHHH
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS-DGEILR-AAPYHQLL 839 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~-~G~i~~-~g~~~~l~ 839 (1335)
|||||++||+.+...+.+.+ ... +.|+|+||||.+++.. ||+|++|+ +|++.. .|+|++..
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999988776544 322 4599999999999865 89999998 899865 68898874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=279.47 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=132.5
Q ss_pred EeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-EEEEecCCcCCCCCHHH
Q 000713 631 KSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-TAYVSQTAWIQTGSIRE 709 (1335)
Q Consensus 631 ~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-~ayv~Q~~~i~~~Tv~e 709 (1335)
.|++++|++ +++++| ++++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 478888853 467888 4999999999999999999999999999999999999999994 799988642
Q ss_pred HhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 000713 710 NILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789 (1335)
Q Consensus 710 NIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~ 789 (1335)
||||||||++||||++.+|++++|||||++||+.+++
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-CEEEEEccCCCccc-cCCeEEEEeCCeEEEe--cChHH
Q 000713 790 SLFNDYVMEALSG-KVVLLVTHQVDFLP-AFDSVLLMSDGEILRA--APYHQ 837 (1335)
Q Consensus 790 ~i~~~~~~~~~~~-~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~--g~~~~ 837 (1335)
.+.+.+.+...++ +|+|++||+++++. .||++++|+++-.+.. |.+..
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9988766555554 89999999999987 4899999998765533 54443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=353.34 Aligned_cols=204 Identities=24% Similarity=0.380 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe---------E
Q 000713 627 AISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK---------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~---------~ 693 (1335)
.++++|++++++.. +++++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++|+ +
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 58999999999632 23579999999999999999999999999999999999997 68899999983 6
Q ss_pred EEEecCCc-CCCCCHHHHhccCCC------CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 694 AYVSQTAW-IQTGSIRENILFGSP------MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 694 ayv~Q~~~-i~~~Tv~eNIlfg~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
|||+|++. +++.||+||+.|+.. ..++ +.+++++..++.+ ..++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHH
Confidence 99999864 567899999997521 1221 2234444444432 2356788888899999999999
Q ss_pred HHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcc--ccCCeEEEEeCC-eEEEecChHH
Q 000713 763 LARALYQDAD-IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL--PAFDSVLLMSDG-EILRAAPYHQ 837 (1335)
Q Consensus 763 LARAl~~~~~-ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l--~~~D~iivl~~G-~i~~~g~~~~ 837 (1335)
|||||+.+|+ |++|||||||||+.++.++.+.+.+...+|+|||++|||++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999987776666799999999999863 568999999997 9999998754
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=282.63 Aligned_cols=200 Identities=28% Similarity=0.449 Sum_probs=161.8
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
.+..|+++|+++.|++ +++|+|||++|++||..+|+|||||||||||+.+.|+.+|.+|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3457999999999964 68999999999999999999999999999999999999999999988763
Q ss_pred ---EEEEecC---CcCCCCCHHHHhccCC---------CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 693 ---TAYVSQT---AWIQTGSIRENILFGS---------PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 693 ---~ayv~Q~---~~i~~~Tv~eNIlfg~---------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
||||+-. -...+.+++|-|+-|. +++++.++++. .+.+.++ .....++.-.+||-||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~---~lle~~g-----~~~la~r~~~~LS~Ge 176 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQ---WLLELLG-----AKHLADRPFGSLSQGE 176 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHH---HHHHHcc-----hhhhccCchhhcCHhH
Confidence 6888753 2334668999887431 33443333221 1222221 1223345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEccCCCccccC-CeEEEEeCCeEEEecC
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAP 834 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~--~~TvIlvTH~~~~l~~~-D~iivl~~G~i~~~g~ 834 (1335)
||||-||||++.+|+++|||||++|||...++.+.+.+.+.... +.++|+|||+.+.++.| ++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999998877765544 78999999999999876 9999999999998874
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=274.42 Aligned_cols=150 Identities=25% Similarity=0.414 Sum_probs=123.3
Q ss_pred CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCCcCCCCCHHHHhcc
Q 000713 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTAWIQTGSIRENILF 713 (1335)
Q Consensus 642 ~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~~i~~~Tv~eNIlf 713 (1335)
++++|+|+||++++|++++|+|||||||||||+++++ ++|++.++|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 3578999999999999999999999999999999974 6899988765 233333
Q ss_pred CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHH
Q 000713 714 GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD--ADIYLLDDPFSAVDAHTASSL 791 (1335)
Q Consensus 714 g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~--~~ilLLDEP~saLD~~~~~~i 791 (1335)
.+.++..++ ++. ..++++.+||||||||++||||++.+ |+++||||||++||+...+.+
T Consensus 68 ---------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 233333332 111 24567889999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 792 FNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 792 ~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
.+.+.+...+|+|+|++||+++++..+|++++|++|+.
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 88766555569999999999999888999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=293.11 Aligned_cols=187 Identities=23% Similarity=0.273 Sum_probs=146.9
Q ss_pred eeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE-----------EcC---------
Q 000713 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-----------VYG--------- 691 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~-----------v~g--------- 691 (1335)
|++++|++ .+.+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 67888963 236899999 4999999999999999999999999999999999995 444
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC-C-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP-M-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
.++|++|.+...+.++.+|+.+... . .+++..++++.+++.+ ....++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 1478888876655566666654311 1 1233444555544422 2345677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999998887665554568999999999999874 89999995 5565433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=275.79 Aligned_cols=188 Identities=25% Similarity=0.321 Sum_probs=159.6
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecC--CcCCCCCHHHHhccCCC----
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT--AWIQTGSIRENILFGSP---- 716 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~--~~i~~~Tv~eNIlfg~~---- 716 (1335)
..+|+||||++++||.++|+|+|||||||||+.|.|.++|++|+|.++|++++...- ..-++.|.||||.+-..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 468999999999999999999999999999999999999999999999999865543 34457799999975321
Q ss_pred ---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 000713 717 ---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793 (1335)
Q Consensus 717 ---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~ 793 (1335)
.-+++++++++-..|.+.+ .....++|-||+.|+++|-|...+|||||+||.++..|+.-.++-.+
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 1234566666655554433 34567899999999999999999999999999999999999888877
Q ss_pred HHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 794 DYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 794 ~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+.+...+++|+|+||||++.+++ ||++++|++|+|...|++++..+.
T Consensus 189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 766666788999999999999875 899999999999999999998653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=259.50 Aligned_cols=216 Identities=28% Similarity=0.394 Sum_probs=166.1
Q ss_pred cEEEEeeEEEecCCC------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------
Q 000713 627 AISIKSASFSWEESS------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------- 692 (1335)
.++++|+++++.... ...+++.+||++++|+..||+|.||||||||.++|.|.++|++|+|.+||.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 356777777664321 235789999999999999999999999999999999999999999999983
Q ss_pred -----EEEEecCCcC-CC-----CCHHHHhc-cCCCCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 -----TAYVSQTAWI-QT-----GSIRENIL-FGSPMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 -----~ayv~Q~~~i-~~-----~Tv~eNIl-fg~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
|-.++|+|.- +| |++.|.=+ ....+++ ++..+.++..+|.+|-.. -++..||-|
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~ 153 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPG 153 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCch
Confidence 6789999852 23 22222111 1122332 233445555555544322 256789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~ 834 (1335)
|||||+|||||+-+|+|++.||.+.+||+..+.++.+..+.... .|-+-|+|+.++..+++ +|+|+||++|+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999987775543 48999999999999987 69999999999999999
Q ss_pred hHHHHhcch--HHHHHHHHh
Q 000713 835 YHQLLASSK--EFQELVSAH 852 (1335)
Q Consensus 835 ~~~l~~~~~--~~~~l~~~~ 852 (1335)
..+++.... -...+++.|
T Consensus 234 t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 234 TADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhhcCCccHHHHHHHHHH
Confidence 999986542 233444444
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-30 Score=268.24 Aligned_cols=204 Identities=29% Similarity=0.374 Sum_probs=161.7
Q ss_pred EEEEeeEEEecC--CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEE--SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~--~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
++++|++..+.+ ..++++|+++|++|++|+++.|+|.||||||||+++|.|.++|++|+|.++|.
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 345555555432 22467999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcC---CCCCHHHHhccCCC------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWI---QTGSIRENILFGSP------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i---~~~Tv~eNIlfg~~------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++-|+|+|-- .+.||.||+..... +....-.+ .+....+.+..++.|.+..++.+..-|||||||-++|
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 3678999953 57899999986321 11100000 0111233456677777777788888999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEec
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g 833 (1335)
+.|..+.|+|+||||-|+||||.++..+++.-.+-.. .+-|.++|||+++.. .+-+|.++|++|+|+.+-
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999986555444 467999999999875 456999999999998753
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=277.92 Aligned_cols=342 Identities=18% Similarity=0.238 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---CchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHH-H
Q 000713 977 SLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST---PLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVL-A 1052 (1335)
Q Consensus 977 ~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~t---p~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi-~ 1052 (1335)
..+++..+..+-+.+--+-+.++....+.|.-+- |..|.+.|=++-++.+-. ..+...+-.++.+....++. .
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~---~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILR---WILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHH---HHHHHhhHHHHHHHHHHHHHHh
Confidence 3455667777888888888899999999998654 455666666666665544 33444444444433333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccH
Q 000713 1053 VVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPF 1132 (1335)
Q Consensus 1053 ~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~ 1132 (1335)
...||+..+.+..+++|.++.-.-..---..||.-..+-+...+.--+++-+-.|++.|+.|+.+..++...++.+.++.
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 45788887776666665554333232233456666677777888889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 000713 1133 FHSFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQY 1211 (1335)
Q Consensus 1133 ~~~~~~~~Wl~~rl~~l~~~~~~~~~~~-~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y 1211 (1335)
.....+--||.+--..+.+.-....... +.....+.++.|..-+.-.|..++...++.+-..+.++-+.....|+....
T Consensus 160 ~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 160 IKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 7777777777765444333222211111 111235678899999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCcccCCCCCCCCC-ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCC
Q 000713 1212 MHVPSEAPEVVEDNRPPPNWP-VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290 (1335)
Q Consensus 1212 ~~~~~E~~~~~~~~~p~~~WP-~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~ 1290 (1335)
.+.+.|-. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+||||||++|+||||+...||||||+
T Consensus 240 l~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 240 LDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred hccchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 87665532 3334566786 5688999999999999875 99999999999999999999999999999999999999
Q ss_pred CCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1291 ARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1291 ~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
++|+|.|||.||.. |+.||+||||..||+.||..|
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yn 356 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYN 356 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHH
Confidence 99999999999974 678999999999999999864
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=290.14 Aligned_cols=206 Identities=25% Similarity=0.402 Sum_probs=143.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCC
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQT 704 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~ 704 (1335)
...+.++|+++++.+ ...++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++.+ ....++.-.-.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----YLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----hhhcccCCCch
Confidence 346999999999964 57999999999999999999999999999999999988886544422 22233221111
Q ss_pred CCHHHHhccCCCCChHHHHHH----HHHhc----------------c---------HHHHhhCCCCCCccccCCCCCCCH
Q 000713 705 GSIRENILFGSPMDSHQYQET----LERCS----------------L---------IKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 705 ~Tv~eNIlfg~~~~~~~~~~~----~~~~~----------------l---------~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.+.-+-+.....-...+++.. ..+|. + .+-+..+.+ +.....++..+|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf-~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGF-LSEMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCC-CHhHHHHHhhccCc
Confidence 222222221110001111111 11110 0 000111111 12334567788999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC-EEEEEccCCCcccc-CCeEEEEeCCe-EEEe
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK-VVLLVTHQVDFLPA-FDSVLLMSDGE-ILRA 832 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~-TvIlvTH~~~~l~~-~D~iivl~~G~-i~~~ 832 (1335)
|||.|++|||||..+|+++||||||++||..+..++-+.+.+ .++ ++++++|.-++++. |.+|+.|++++ +.+.
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 999999999999999999999999999999999888654432 234 89999999999986 79999999999 7789
Q ss_pred cChHHHHhc
Q 000713 833 APYHQLLAS 841 (1335)
Q Consensus 833 g~~~~l~~~ 841 (1335)
|+|+++...
T Consensus 302 Gnydqy~~t 310 (614)
T KOG0927|consen 302 GNYDQYVKT 310 (614)
T ss_pred CCHHHHhhH
Confidence 999988643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=334.62 Aligned_cols=204 Identities=25% Similarity=0.443 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCC----------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--CCCcEEEEcCe--
Q 000713 627 AISIKSASFSWEES----------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--HTQGTIQVYGK-- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~----------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~~~G~i~v~g~-- 692 (1335)
.+.++|+++..+.. +.+.+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999987531 12469999999999999999999999999999999999976 37899999882
Q ss_pred --------EEEEecCCcC-CCCCHHHHhccCC------CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCC-CC
Q 000713 693 --------TAYVSQTAWI-QTGSIRENILFGS------PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERG-VN 752 (1335)
Q Consensus 693 --------~ayv~Q~~~i-~~~Tv~eNIlfg~------~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~ 752 (1335)
+|||+|++.+ .+.||+||+.|+. ..+.+ +.+++++..+|.+. .++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCC
Confidence 6999998755 5679999998752 11211 23445555555432 245555443 57
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc--cccCCeEEEEeC-CeE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF--LPAFDSVLLMSD-GEI 829 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--l~~~D~iivl~~-G~i 829 (1335)
||||||||++|||||+.+|++++|||||||||+.++..+.+.+.+...+|+|||++|||++. ...+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999998777766679999999999984 466899999996 899
Q ss_pred EEecChHH
Q 000713 830 LRAAPYHQ 837 (1335)
Q Consensus 830 ~~~g~~~~ 837 (1335)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998754
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=261.21 Aligned_cols=142 Identities=42% Similarity=0.654 Sum_probs=126.8
Q ss_pred EEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEE
Q 000713 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYV 696 (1335)
Q Consensus 630 i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv 696 (1335)
++|+++.|++ +++++++||++++|++++|+|+||||||||+++|.|+++|.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6889999964 36999999999999999999999999999999999999999999999884 2233
Q ss_pred ecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 000713 697 SQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 697 ~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLL 776 (1335)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 777 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
||||++||+.++..+.+.+.+...+++|++++||++++++. +|++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999998887666544457899999999999987 59999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=245.11 Aligned_cols=184 Identities=28% Similarity=0.415 Sum_probs=151.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcCe-----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYGK----------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g~----------- 692 (1335)
.+.++|++..-++ .-.|.|+|++|.+||++-+.||+|||||||++-+.|.+.+. +|++.++++
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 4678899987653 46899999999999999999999999999999999999875 799999873
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCCCh------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPMDS------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|..+|++|+|+ .+|.+|++|..+.+- .....++++.+|...+.. .+.+||||||.||+|-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----------dP~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-----------DPATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-----------ChhhcCcchHHHHHHHH
Confidence 799999999975 599999999866431 122345555566554443 45689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccccCCeEEEE
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
+|...|+.+|||||||.||..-+.+.-+.++... ..|..+|+||||.+.++.-.+|+.|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988887777666543 4588999999999998855666655
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=251.35 Aligned_cols=201 Identities=23% Similarity=0.369 Sum_probs=164.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++.++++ -.+|+|+||++.+||+-+|+||||+||||++..|.|-.+|+.|+|.++|.
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 46889999999964 57999999999999999999999999999999999999999999999982
Q ss_pred --EEEEecCCcCC-CCCHHHHhccCCCCC---------------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 693 --TAYVSQTAWIQ-TGSIRENILFGSPMD---------------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 --~ayv~Q~~~i~-~~Tv~eNIlfg~~~~---------------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
||-=+|.|-+| +.||+||+.....-+ +++.+++++..+|. | +.+....+||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~---------~--~~~~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG---------D--ERDRLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc---------h--hhhhhhhhhc
Confidence 57789999887 569999997543222 12344444444432 2 1234456899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
-||||++.|+.-+.++|+++|||||.+|+-.....+.- ++++...++.++++|.||++|+.. +|+|-||+.|++...|
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999999544444443 455666778999999999999975 7999999999999999
Q ss_pred ChHHHHhc
Q 000713 834 PYHQLLAS 841 (1335)
Q Consensus 834 ~~~~l~~~ 841 (1335)
+.+++.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998654
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-28 Score=258.49 Aligned_cols=190 Identities=27% Similarity=0.347 Sum_probs=146.3
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeE------------EEEe----cCCcCCCCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------AYVS----QTAWIQTGS 706 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~------------ayv~----Q~~~i~~~T 706 (1335)
.++.+||||+|++|++++.+|+||+||||+|++|.|.+.|++|.|.++|.+ ++|. |--|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp-- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP-- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech--
Confidence 458999999999999999999999999999999999999999999999853 3432 1223222
Q ss_pred HHHHhccC---CCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000713 707 IRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783 (1335)
Q Consensus 707 v~eNIlfg---~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saL 783 (1335)
+.|-+..- .+.....|++.++.. . +.+. -+..+..+...||-|||.|+.||.||+++|+|++|||||-+|
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l--~---eiLd--l~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFL--T---EILD--LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHH--H---HHhc--chhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 22222111 123334444433321 1 1111 122345577899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 784 DAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|..++..|.+-+... ..++.||+++||+++-+. -||||++|+.|+++..|+.+++.++
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999998766544 346899999999999876 5899999999999999999998764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=296.17 Aligned_cols=207 Identities=31% Similarity=0.494 Sum_probs=172.3
Q ss_pred ccEEEEeeEEEecCC--CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC---CCcEEEEcCe--------
Q 000713 626 RAISIKSASFSWEES--SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQGTIQVYGK-------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~--~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~---~~G~i~v~g~-------- 692 (1335)
..+.++|++..-++. ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.+||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 357788888876554 246899999999999999999999999999999999999874 7999999993
Q ss_pred --EEEEecCCc-CCCCCHHHHhccCCC------CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCC-CCCCCHHHH
Q 000713 693 --TAYVSQTAW-IQTGSIRENILFGSP------MDS----HQYQETLERCSLIKDLELLPYGDNTEIGER-GVNLSGGQK 758 (1335)
Q Consensus 693 --~ayv~Q~~~-i~~~Tv~eNIlfg~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~-g~~LSGGQk 758 (1335)
.|||.|+.. +.+.||+|++.|... .+. ++++++++..+|. +-.+|.||.. ...+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCccccchh
Confidence 699999876 567899999987532 122 2344455544443 2245677643 357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc--cccCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF--LPAFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--l~~~D~iivl~~G~i~~~g~~~ 836 (1335)
+||++|.-+..||.|++|||||||||..++.++.+.+.+.+.+|+|||++=||+.. ....|++++|.+|+++..|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999999888877889999999999975 4668999999999999999998
Q ss_pred HHH
Q 000713 837 QLL 839 (1335)
Q Consensus 837 ~l~ 839 (1335)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 764
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=281.54 Aligned_cols=201 Identities=27% Similarity=0.417 Sum_probs=166.5
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC-
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA- 700 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~- 700 (1335)
.+..++++|++++|++. +++++++||.|++|+.+||+||||+||||||+.|+|...|.+|+|.+.- ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45689999999999753 5799999999999999999999999999999999999999999999865 489999975
Q ss_pred -cCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 701 -WIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 701 -~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
+..+.|+.|++.-..+. .+...+..+..+.+..+-. ..+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 34566999999865532 3455666666665544332 34566899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEe-cChHHHHh
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA-APYHQLLA 840 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~-g~~~~l~~ 840 (1335)
||+.||.++.+.+-+.+. . -.-|||+||||.+|+.. |++|+.+++ ++... |+|++..+
T Consensus 466 PTNhLDi~s~~aLe~aL~-~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 466 PTNHLDIESLEALEEALL-D--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCccCCHHHHHHHHHHHH-h--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999877654332 2 25699999999999986 699999999 76655 88888754
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-27 Score=259.27 Aligned_cols=182 Identities=24% Similarity=0.316 Sum_probs=122.2
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHH-HHHhc--------------------CCCCCCcEEEEcC-eEEEEecCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLL-AAILG--------------------EVPHTQGTIQVYG-KTAYVSQTA 700 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL-~~ilG--------------------~~~~~~G~i~v~g-~~ayv~Q~~ 700 (1335)
.++|+|+||+|++||+++|+|+||||||||+ ..+.+ ...|..++ +.| ..++..|++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 85 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQK 85 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecCC
Confidence 5799999999999999999999999999996 33321 01111111 112 123333433
Q ss_pred c-CC--CCCHH---HHhcc-CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC--
Q 000713 701 W-IQ--TGSIR---ENILF-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA-- 771 (1335)
Q Consensus 701 ~-i~--~~Tv~---eNIlf-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~-- 771 (1335)
. .. ..++. +...+ ...+......+. .+.++.+...+ ....+++.+||||||||++||||++.+|
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~~ 158 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLTG 158 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCCC
Confidence 2 11 11322 11111 100000000000 11122222211 1245678899999999999999999998
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE------eCCeEEEec
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM------SDGEILRAA 833 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl------~~G~i~~~g 833 (1335)
+++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++++..||+|++| ++|+|+++|
T Consensus 159 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 159 VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 59999999999999999999987766555789999999999988889999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=243.60 Aligned_cols=201 Identities=25% Similarity=0.338 Sum_probs=161.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC--CCCCCcEEEEcCe------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE--VPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~--~~~~~G~i~v~g~------------ 692 (1335)
.++++|++.+-++. +++|+++||+|++||+.+|.||||||||||.++|+|. +++++|+|.++|.
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 58999999988642 4899999999999999999999999999999999997 4789999999994
Q ss_pred --EEEEecCCcCCCC-CHHHHhccCCC----C---ChH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 --TAYVSQTAWIQTG-SIRENILFGSP----M---DSH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 --~ayv~Q~~~i~~~-Tv~eNIlfg~~----~---~~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+...+|.|.-..+ |+.+-+.-+.. . ..+ +.++.++..++.+++. +..++ ..+|||+|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcCcchHH
Confidence 4688999875554 88887764211 1 112 2333344444444221 11122 259999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC--CeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF--DSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~--D~iivl~~G~i~~~g~~~~ 837 (1335)
|..|+.+++.+|++.+||||=||||...-+.+-+-+-....+|.+++++||.-+.+.+. |+|.+|-+|+|+.+|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 99999999999999999999999999998877766556667799999999999998875 99999999999999998 6
Q ss_pred HH
Q 000713 838 LL 839 (1335)
Q Consensus 838 l~ 839 (1335)
+.
T Consensus 231 l~ 232 (251)
T COG0396 231 LA 232 (251)
T ss_pred HH
Confidence 54
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-27 Score=236.15 Aligned_cols=205 Identities=25% Similarity=0.412 Sum_probs=160.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
+.++++++++.|++ ..-.+|+||++.|||..+|+|++||||||||++|.|-+.|+.|+|....
T Consensus 5 PLL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 5 PLLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred cceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 46889999999975 3568999999999999999999999999999999999999999998753
Q ss_pred --------eEEEEecCCcC---CCCCHHHHh----c-cCCCCChHHHHHHHH-HhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 --------KTAYVSQTAWI---QTGSIRENI----L-FGSPMDSHQYQETLE-RCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 --------~~ayv~Q~~~i---~~~Tv~eNI----l-fg~~~~~~~~~~~~~-~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
..|+|-|+|-- ..-+.-.|| + -|. ..|-+.-. +....++.+. |.+.|++.+.++|
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~----RHYG~iR~~a~~WL~~VEI----~~~RiDD~PrtFS 153 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA----RHYGNIRAEAQDWLEEVEI----DLDRIDDLPRTFS 153 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh----hhhhhHHHHHHHHHHhccc----CcccccCcccccc
Confidence 14899999842 122223333 2 121 11222111 1111222222 4567788999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEe
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA 832 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~ 832 (1335)
||++||++|||-|...|+++++||||.|||..++..+.+.+.... .-+-.+++||||+..... +|+.++|++|+++++
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 999999999999999999999999999999999999987554332 237899999999998875 799999999999999
Q ss_pred cChHHHHhc
Q 000713 833 APYHQLLAS 841 (1335)
Q Consensus 833 g~~~~l~~~ 841 (1335)
|-.+.++..
T Consensus 234 GLTDrvLDD 242 (258)
T COG4107 234 GLTDRVLDD 242 (258)
T ss_pred ccccccccC
Confidence 988887754
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=234.75 Aligned_cols=176 Identities=28% Similarity=0.402 Sum_probs=139.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-E-----------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-T-----------AY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-~-----------ay 695 (1335)
++.+|++..-+ +...+.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. + -|
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 45567776553 357999999999999999999999999999999999999999999999863 1 24
Q ss_pred EecCCcC-CCCCHHHHhccCCCC----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 696 VSQTAWI-QTGSIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 696 v~Q~~~i-~~~Tv~eNIlfg~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
..-++-+ ...|+.||+.|-.++ +.+...++++..+|.. ++.+ ...+||-|||+||+|||-..+.
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dl----------p~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDL----------PVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-cccc----------chhhcchhHHHHHHHHHHHcCC
Confidence 4444444 456999999985442 3456667777776642 2222 3457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA 817 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~ 817 (1335)
+++.|||||+++||.+....+-..+.....+|-.||++||+.-.++.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999998765544444556789999999999866543
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=254.53 Aligned_cols=182 Identities=23% Similarity=0.361 Sum_probs=129.7
Q ss_pred CceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHh--------cCC--CCCCcEEEEc----CeEEEEecCCc--------
Q 000713 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL--------GEV--PHTQGTIQVY----GKTAYVSQTAW-------- 701 (1335)
Q Consensus 644 ~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~il--------G~~--~~~~G~i~v~----g~~ayv~Q~~~-------- 701 (1335)
..|+|+|++||.|.+++|+|++|||||||++.++ +.. .|..++.... .++-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999663 110 1222211110 12334444331
Q ss_pred ---------------------------------------CCCCCHHHHhccCCCCCh-HHHHHHHHHhccHHHHhhCCCC
Q 000713 702 ---------------------------------------IQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLELLPYG 741 (1335)
Q Consensus 702 ---------------------------------------i~~~Tv~eNIlfg~~~~~-~~~~~~~~~~~l~~dl~~l~~g 741 (1335)
+.+.|+.||+.|...+.. .+..+. ++.+..+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~---------L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT---------LCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHH---------HHHcCCc
Confidence 234455555544322111 111112 2222222
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC
Q 000713 742 DNTEIGERGVNLSGGQKQRIQLARALYQD---ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818 (1335)
Q Consensus 742 d~t~ig~~g~~LSGGQkqRv~LARAl~~~---~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~ 818 (1335)
+. ..+++..+||||||||++||||+.++ |+++||||||++||++..+.+.+.+.+...+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 11 25678889999999999999999996 799999999999999999999886665556789999999999999889
Q ss_pred CeEEEE------eCCeEEEecCh
Q 000713 819 DSVLLM------SDGEILRAAPY 835 (1335)
Q Consensus 819 D~iivl------~~G~i~~~g~~ 835 (1335)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=240.26 Aligned_cols=348 Identities=20% Similarity=0.180 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHH
Q 000713 964 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTN 1043 (1335)
Q Consensus 964 ~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~ 1043 (1335)
.+-++..++-.+|+..+...|.+.=.+++...+...+++|..-=-..+....+ +|++.+...+...--..+.-.=-
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 34455667788899999999999999999999999988877643333333443 36666665443311111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH---
Q 000713 1044 ACSNLGVLAVVTWQVLFVSIPV----IFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR--- 1116 (1335)
Q Consensus 1044 ~~~~l~vi~~~~~~~~~~~ipl----~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~--- 1116 (1335)
.-.-+++++...||+.++.+.- +.+.+.-++.-.+..+ .-++..+.-.++..-+..++.+|+|.|+..+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~----eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~ 222 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK----EASEASIRANQLADATLRNAEVIEAMGMLGNLAK 222 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH----HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHH
Confidence 1223455666677765543322 2222333332222222 2334445556788889999999999998664
Q ss_pred -HHHHHHHHHhhccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH-HHHHHHHHHHHHHHHHH
Q 000713 1117 -FFAKNLDLIDTNASPFFHSFAANEWL-IQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM-ALSYGLSLNSSLVMSIQ 1193 (1335)
Q Consensus 1117 -f~~~~~~~ld~~~~~~~~~~~~~~Wl-~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Gl-alsy~l~l~~~l~~~v~ 1193 (1335)
..+.+.+.++.+.++...+.....-- .+|+-+- +.+. ++.+.+..++.++||.+-. ++..+ ..-..+-..|.
T Consensus 223 rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ-s~iL---g~GA~Lvi~ge~t~G~mIA~SIl~g-RaLaPid~aI~ 297 (580)
T COG4618 223 RWGRFNAAYLSAQERASDRNGAFGALSRALRMALQ-SAVL---GLGAWLVIKGEITPGMMIAGSILSG-RALAPIDLAIA 297 (580)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHH---hcceeeEEcCcCCcchhhHHHHHhh-hhhccHHHHHH
Confidence 44556666666666554432211110 1222221 1111 2223333467788775422 22111 22235667889
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000713 1194 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1194 ~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
.|.+.-....|-.|+.+..+..+++....+ -|. .+|.+..+++++-=++...|+|+||||+++|||-+|||||+
T Consensus 298 ~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP~----P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 298 NWKQFVAARQSYKRLNELLAELPAAAERMP--LPA----PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCC--CCC----CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCC
Confidence 999999999999999999875444322111 111 36999999999965555668999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCCc------CCCceeecccccccccHHhhHHhhh
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEYD------EPMELMKREGSLFGQLVKEYWSHLH 1330 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~------~~i~lV~Qep~LFsGTIrE~~~~~~ 1330 (1335)
|||||||..+|.+...|.+|+|.+||-|+.+- +.+|+.|||.-||+|||+||.....
T Consensus 372 gSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~ 434 (580)
T COG4618 372 GSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG 434 (580)
T ss_pred CccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc
Confidence 99999999999999999999999999999874 4689999999999999999965544
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=290.62 Aligned_cols=94 Identities=27% Similarity=0.479 Sum_probs=85.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALY---QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~---~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.+...+|+|+|+|||+++.+..+|+|+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 46788899999999999999998 699999999999999999999999877666667999999999999997789999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000713 823 LMS------DGEILRAAPYHQLL 839 (1335)
Q Consensus 823 vl~------~G~i~~~g~~~~l~ 839 (1335)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999988764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-26 Score=231.99 Aligned_cols=123 Identities=44% Similarity=0.724 Sum_probs=107.4
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcCCCC-CHHHHh
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTG-SIRENI 711 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i~~~-Tv~eNI 711 (1335)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|. ++|++|++.+++. |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999873 7999999877654 79999
Q ss_pred ccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 712 lfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
...++++++++.+++.. ..++.++.++.+||||||||++||||++++|+++||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33456677777766543 23456778889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-21 Score=222.54 Aligned_cols=459 Identities=17% Similarity=0.208 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 358 FLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGG---EIMNYVTVDAYRIGEFPFWFHQIWTT 434 (1335)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G---~IvNlms~D~~ri~~~~~~~h~~w~~ 434 (1335)
++..+-.++.+..-.|.-.++++-+|+-|+.-.|++=+.-...-+-....| ..-|-++.|+..+.+....+..=.+-
T Consensus 164 ~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtK 243 (728)
T KOG0064|consen 164 FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTK 243 (728)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhh
Confidence 344444556666667788899999999999999999885332111111122 23466899999998876655444444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHH
Q 000713 435 S-VQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQ----HKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWET 509 (1335)
Q Consensus 435 p-lqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~----~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~ 509 (1335)
| +.+++.-+-|-...+-....|.....+.+.+...+-|.. .+...+-...+..--.+=+.+++|-..|-+|+-.+
T Consensus 244 P~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~Ghk 323 (728)
T KOG0064|consen 244 PVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHK 323 (728)
T ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccH
Confidence 5 355555555544332211111111112222222222222 22222222222222345677889999999999877
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhHH---HhHHHHH--HHHH-HHHHHHHhcCc--c-----cHHHHHHHH-
Q 000713 510 HFKNAIEILRNVEYKWL----SAVQLRKAYNGFL---FWSSPVL--VSTA-TFGACYFLNVP--L-----YASNVFTFV- 571 (1335)
Q Consensus 510 ~f~~~I~~~R~~El~~l----~~~~~~~a~~~~~---~~~~p~l--v~~~-tF~~~~l~~~~--L-----t~~~vFt~l- 571 (1335)
.-.+++++.-+.=...+ ++..+...+-.|+ .|+..-+ +++- .++++ ..+++ + +-...|++-
T Consensus 324 vE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~-~s~~~~~~~e~~~srt~~f~t~r 402 (728)
T KOG0064|consen 324 VELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL-ASEGTLQLSEEGNSRTKEFITNR 402 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc-CCCCcccccccchhHHHHHHHHH
Confidence 66666655333211111 1111111111111 1111000 0000 00111 01111 1 112334332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-----cccc-----cc--------cCCCC----CCcccE
Q 000713 572 ATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA-PELQ-----SMNI-----RQ--------KGNIE----NVNRAI 628 (1335)
Q Consensus 572 alf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~-~e~~-----~~~~-----~~--------~~~~~----~~~~~i 628 (1335)
-++-...+.+..+-..+..+.|-..--.|+.+-++- ++.. ...+ .+ .+-.. .....|
T Consensus 403 ~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI 482 (728)
T KOG0064|consen 403 RLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGI 482 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccce
Confidence 333334455666666777777777777788754431 1100 0000 00 00000 012347
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--CeEEEEecCCcCCCCC
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--GKTAYVSQTAWIQTGS 706 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g~~ayv~Q~~~i~~~T 706 (1335)
.++|+-.--|. ...+...+||+|++|....|+||||||||||.+.|.|+.|...|...+. .++-|+||.|..--+|
T Consensus 483 ~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 483 ILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred EEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 78888776554 2457899999999999999999999999999999999999999988774 4689999999999999
Q ss_pred HHHHhccCCC--------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 707 IRENILFGSP--------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 707 v~eNIlfg~~--------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
.||.|.+... +.+....+.++...|+.-++. ..|.+ .+-+--..||||+|||+++||-.|++|+.-+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~d-a~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWD-AVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChh-hhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 9999998643 333445566666666544433 22222 1223334699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
.|||+-+++...+|+... ..|-+.|-|||++..-+.-.+.+-.
T Consensus 639 cTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 999999999999998653 2488999999999877654444433
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=290.06 Aligned_cols=207 Identities=24% Similarity=0.392 Sum_probs=171.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
.++.++|+++.|+.... +.+++++.|++||+.++.|+|||||||++++|.|+.+|++|++.++|.
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57899999999976432 899999999999999999999999999999999999999999999762
Q ss_pred -EEEEecCCcC-CCCCHHHHhccCCC---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 693 -TAYVSQTAWI-QTGSIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 693 -~ayv~Q~~~i-~~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
+|||||.--+ ...|.||++.+... +.+...+++++ .+.+.++..++++ ....++|||||+|+++|-|+
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~--~ll~~~~L~~~~~-----~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE--KLLRLVGLGPYAN-----KQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH--HHHHHcCChhhhc-----cchhhCCCcchhhHHHHHHH
Confidence 7999997544 57799999976422 22222222221 1223333344444 34568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+|++++||||++|+||..++++++.+.+..++|+.+|++||.+++.+. |||+.+|.+|++...|+++++.++
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999998766666667799999999999976 899999999999999999999754
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=260.66 Aligned_cols=191 Identities=27% Similarity=0.419 Sum_probs=153.8
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC---CCcEEEEcC----------eEEEEecCCc-CCCCCHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQGTIQVYG----------KTAYVSQTAW-IQTGSIR 708 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~---~~G~i~v~g----------~~ayv~Q~~~-i~~~Tv~ 708 (1335)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+.. +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999998764 356888887 3799999765 5678999
Q ss_pred HHhccCC-------CCC---hHHHH-----HHHHHhccHHHHhhCCCCCCccccCCCC-CCCHHHHHHHHHHHHHccCCC
Q 000713 709 ENILFGS-------PMD---SHQYQ-----ETLERCSLIKDLELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 709 eNIlfg~-------~~~---~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSGGQkqRv~LARAl~~~~~ 772 (1335)
|-+.|.. .+| +..|. .+++..+ +.+..+|.+|.... ..|||||+||++|-++..++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilG-------L~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhC-------chhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 222 12222 1222222 34455677876544 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCc--cccCCeEEEEeCCeEEEecChHHHHh
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDF--LPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~--l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++..||++.|||..++-++.+.+.+.. ..+.|.++.-||... ....|.|++|.+|+++.+|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999998887665443 458899999998864 45679999999999999999998863
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=247.97 Aligned_cols=192 Identities=26% Similarity=0.443 Sum_probs=135.0
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc-------CeEEEEe
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY-------GKTAYVS 697 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~-------g~~ayv~ 697 (1335)
...|.+.|.+.+|+. +..|.+-++++.+|..+++||+||+||||||++|.. |.|..- |..-..-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 346888899999963 679999999999999999999999999999999997 333221 1111111
Q ss_pred cCCcCCCCCHHHHhccCC-CC----C-hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 698 QTAWIQTGSIRENILFGS-PM----D-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 698 Q~~~i~~~Tv~eNIlfg~-~~----~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
|+- +...+-+...+... .. + ++-|.+.+...+..++....| ..+||||-|-|++||||+..+|
T Consensus 149 ~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 211 12223333333221 11 1 122344555555555555444 3479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE-EEecChHHHH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI-LRAAPYHQLL 839 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i-~~~g~~~~l~ 839 (1335)
|||||||||+.||.....++-+.+ ... +.|+|+||||-.||.. |..|+..++-++ .+.|++++..
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL-~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYL-QTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHH-hhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999999999998886543 222 3899999999999986 688888877665 3456555543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=236.51 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=120.6
Q ss_pred eeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------EEEEcC----------eEEEEecCCcCCCCCH
Q 000713 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG---------TIQVYG----------KTAYVSQTAWIQTGSI 707 (1335)
Q Consensus 647 ~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G---------~i~v~g----------~~ayv~Q~~~i~~~Tv 707 (1335)
+++++++++| +++|+||||||||||+++|.|.+++..| ++.+.| +++|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999999876533 344433 579999999877
Q ss_pred HHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q 000713 708 RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY----QDADIYLLDDPFSAV 783 (1335)
Q Consensus 708 ~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~ilLLDEP~saL 783 (1335)
|+.. ..++.+++++. +. ...+++.+||||||||++||||+. ++|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~----~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PG----KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CC----ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 2211 12233333333 11 123567789999999999999986 577999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 784 DAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|+.....+.+.+.+ ..++.|+|++||+++.+..+|+++.|..
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999875544 3457899999999998888999999853
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-25 Score=221.95 Aligned_cols=190 Identities=29% Similarity=0.405 Sum_probs=143.9
Q ss_pred cEEEEeeEEEecC----CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--C---------
Q 000713 627 AISIKSASFSWEE----SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--G--------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~----~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g--------- 691 (1335)
.+.++|+++++.- .-.-|+++|+||+++.||++++-||+||||||||++|.|-+.|++|+|.+. |
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4677787776631 112479999999999999999999999999999999999999999999884 2
Q ss_pred ----------eEEEEecCC-cCCCCCHHHHhc-----cCCCCCh--HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 692 ----------KTAYVSQTA-WIQTGSIRENIL-----FGSPMDS--HQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 692 ----------~~ayv~Q~~-~i~~~Tv~eNIl-----fg~~~~~--~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
.+|||+|-- .++.-+-.|-+. -|-+.+. .+....+.+..+.+.+-.+ .+.++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 369999963 233333333332 2332221 1223334444444444433 35689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
|||+||||.|||+++.|-+|+||||||++||+.+++.+.+.+.....+|..+|=+-||-+.-.. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999998887666667789999999999877554 699887753
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-21 Score=214.20 Aligned_cols=349 Identities=19% Similarity=0.260 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHH
Q 000713 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIF 1036 (1335)
Q Consensus 957 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~ 1036 (1335)
.++--|.++.....+...+.......+|.+.-.+++.+..++++.+|+.-+++-..+|++.++.+|+..|.. --..+-.
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf-~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISF-AFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceee-hHhhhHH
Confidence 344445555555556666777788899999999999999999999999999999999999999999999983 2333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcc--ccchHHHHHHHHHcchHHHHhcccH
Q 000713 1037 AVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGT--TKSLVANHLAESIAGAMTIRAFEEE 1114 (1335)
Q Consensus 1037 ~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~--~rSpi~s~f~Etl~G~~tIRAf~~e 1114 (1335)
+.++.+-.+++.+-.++.+|+++.+++..+++.++.+ |+..+|-.|+.+.. +...+++|++-.++|.+-.+--+..
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~--~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R 205 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGG--FVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRER 205 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHH
Confidence 7788888899999999999998876665555444333 22223333333222 3456899999999999988776544
Q ss_pred HHHHHHHHH------HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH---HH
Q 000713 1115 DRFFAKNLD------LIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS---LN 1185 (1335)
Q Consensus 1115 ~~f~~~~~~------~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~---l~ 1185 (1335)
.+....+.- .-++..+.......++.|-.+-+=.+.++++. +.+.+ + ..+.. .++++++. +-
T Consensus 206 ~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~-----lal~~-~-w~st~--~a~tivlvlLflr 276 (546)
T COG4615 206 AEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFW-----LALSL-G-WASTN--VAATIVLVLLFLR 276 (546)
T ss_pred HHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHhh-c-cchhh--HHHHHHHHHHHHh
Confidence 433322211 11111122222224455544322111111111 11110 1 11111 23333333 34
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCc
Q 000713 1186 SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGH 1265 (1335)
Q Consensus 1186 ~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~Ge 1265 (1335)
+.+..++-....+-+.-+|..||.++..-|..+. -....+-|+| -.||++||.+.|.++. .=+.-||++|+.||
T Consensus 277 ~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGe 350 (546)
T COG4615 277 TPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGE 350 (546)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCc
Confidence 6777888888888889999999998865322221 1122233445 4699999999998764 35677999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHH
Q 000713 1266 KIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVK 1323 (1335)
Q Consensus 1266 kVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIr 1323 (1335)
.|=|+|.+||||||++++|.|++.|++|+|+.||.+++. |+.++-|.-|-.||..++-
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 999999999999999999999999999999999999985 4556777888899987764
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=222.67 Aligned_cols=154 Identities=23% Similarity=0.292 Sum_probs=121.8
Q ss_pred eeeEeeCCcEEEEEcCCCCCHHHHHHHHh----cCCCCCCcEEEEc----------CeEEEEecCC-c----C-CCCCHH
Q 000713 649 ISLEVRPGQKVAICGEVGSGKSTLLAAIL----GEVPHTQGTIQVY----------GKTAYVSQTA-W----I-QTGSIR 708 (1335)
Q Consensus 649 isl~i~~G~~v~IvG~~GsGKSTLL~~il----G~~~~~~G~i~v~----------g~~ayv~Q~~-~----i-~~~Tv~ 708 (1335)
.++++.+| +++|+||||||||||+.+|. |..+|.+|.+..+ ..+++++|++ + + .+.|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 44667777 99999999999999999994 9999988765421 2578999987 2 1 134999
Q ss_pred HHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCC
Q 000713 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR------IQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 709 eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR------v~LARAl~~~~~ilLLDEP~sa 782 (1335)
||+.++. +++.++.+ .+.+.+||+||||| ++||||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998752 11111111 35667899999996 7899999999999999999999
Q ss_pred CCHHHHH-HHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeC
Q 000713 783 VDAHTAS-SLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 783 LD~~~~~-~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
||+.... .+.+.+.+...+ ++|+|++||+++.+..+|+++.|++
T Consensus 152 LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 152 LDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999 888766554444 7899999999998888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-23 Score=241.00 Aligned_cols=200 Identities=24% Similarity=0.366 Sum_probs=164.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--CeEEEEecCC--
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--GKTAYVSQTA-- 700 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g~~ayv~Q~~-- 700 (1335)
.+.|.++|++|.|+++. .+++++||-|..++.+++|||||+||||||+++.|++.|..|.|.-. .++++-.|..
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 45799999999997643 68999999999999999999999999999999999999999998654 3567777753
Q ss_pred -cCCCCCHHHHhc--cCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 000713 701 -WIQTGSIRENIL--FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777 (1335)
Q Consensus 701 -~i~~~Tv~eNIl--fg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLD 777 (1335)
.....+.-|+++ |....+.+..+..+..|+|..|....| ..+||+|||.||..||..+..|.+++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHhcCCcEEEec
Confidence 335678888886 443355667788899999987765444 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHHH
Q 000713 778 DPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQLL 839 (1335)
Q Consensus 778 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l~ 839 (1335)
|||++||..+...+-+ .+.. -.-+||+||||..++.+ +++|.+.+||.+. ..|.+....
T Consensus 535 EPtnhLDi~tid~lae-aiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999766644 3332 24689999999999987 5999999998875 467776543
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=223.76 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=126.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEee-CCcEEEEEcCCCCCHHHHHHHHhcCC-CCCCcEEEE------------cCe
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVR-PGQKVAICGEVGSGKSTLLAAILGEV-PHTQGTIQV------------YGK 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~-~G~~v~IvG~~GsGKSTLL~~ilG~~-~~~~G~i~v------------~g~ 692 (1335)
.|+++|.. +|.+. ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 47888877 65421 56777654 58999999999999999999999643 333333332 124
Q ss_pred EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCC-CCccccCCCCCCCHHHHHHHHHHHHHcc--
Q 000713 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG-DNTEIGERGVNLSGGQKQRIQLARALYQ-- 769 (1335)
Q Consensus 693 ~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~g-d~t~ig~~g~~LSGGQkqRv~LARAl~~-- 769 (1335)
+++++|++...-...| +. ..+.+.+.+.. . ++.+ ..+.++.++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 7888887643211111 11 22333222211 0 1111 1233456788999999999999999984
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 770 --------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 770 --------~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
+|++++|||||++||+.....+.+.+.+...+++|+|++||+++++.. +|++++|++|.+
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999998877655444458999999999998875 699999999864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-22 Score=237.37 Aligned_cols=199 Identities=28% Similarity=0.442 Sum_probs=158.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++.. ..++|+||++++||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+
T Consensus 262 ~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 262 PVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred cEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 45667776531 2589999999999999999999999999999999999999999999996
Q ss_pred -EEEEecCC----cCCCCCHHHHhccCC--------CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 -TAYVSQTA----WIQTGSIRENILFGS--------PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 -~ayv~Q~~----~i~~~Tv~eNIlfg~--------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|||.+- .+...+|++||.+.. ..+..+.++.. ....+++..-..+. .....+||||.+|
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~--~~~~~~l~Ik~~s~----~~~v~~LSGGNQQ 408 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALA--ERYIRRLRIKTPSP----EQPIGTLSGGNQQ 408 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHH--HHHHHhcCcccCCc----cchhhcCCchhhh
Confidence 69999863 457889999998751 12222222221 12233343322222 2355689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
+|.|||.|+.+|+++||||||.|+|.-+..+|++.+.+...+|++||++|.++.++- .||||+||++|+|+..-+.++
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999987778889999999999998765 799999999999987544443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=228.47 Aligned_cols=177 Identities=20% Similarity=0.262 Sum_probs=114.0
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCcEEEEcCeEEEEecCCcCC---
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV----------------PHTQGTIQVYGKTAYVSQTAWIQ--- 703 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~----------------~~~~G~i~v~g~~ayv~Q~~~i~--- 703 (1335)
..++++++ |++++|+||||||||||+++|.+.+ .+.+|.....+.+.+++|++.-+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 45677776 7899999999999999999998443 33333111122234444443110
Q ss_pred ---CCCHH-------HHhccC-CCCChHHHHHHHHHhccHHHHh--hCCCCC-------CccccCCCCCCCHHHHHHHHH
Q 000713 704 ---TGSIR-------ENILFG-SPMDSHQYQETLERCSLIKDLE--LLPYGD-------NTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 704 ---~~Tv~-------eNIlfg-~~~~~~~~~~~~~~~~l~~dl~--~l~~gd-------~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|. ....++++.+||||||||++|
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 01111 222221 1223334444444443322100 001111 112456788999999999999
Q ss_pred HHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEe
Q 000713 764 ARALY----QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825 (1335)
Q Consensus 764 ARAl~----~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~ 825 (1335)
|||++ .+|+++||||||++||+...+.+.+.+.+. .+++|+|++||+.+....||++++|+
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-SDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99996 368999999999999999999998866543 44788999999987777899999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-22 Score=254.78 Aligned_cols=97 Identities=24% Similarity=0.467 Sum_probs=88.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDA---DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~---~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
++++..+||||||||+.|||++.++| ++|||||||++||++....+.+.+.+...+|+|+|+|||+++.+..+|+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 57788899999999999999999999 999999999999999999998866655557999999999999998899999
Q ss_pred EE------eCCeEEEecChHHHHhcc
Q 000713 823 LM------SDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 823 vl------~~G~i~~~g~~~~l~~~~ 842 (1335)
.| ++|+|++.|+++++.+..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 99 799999999999997654
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-22 Score=225.18 Aligned_cols=169 Identities=22% Similarity=0.267 Sum_probs=123.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcCCCCCC-cEEEEcC----------------eEEEEecCCc----------CCCCCHH
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQ-GTIQVYG----------------KTAYVSQTAW----------IQTGSIR 708 (1335)
Q Consensus 656 G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-G~i~v~g----------------~~ayv~Q~~~----------i~~~Tv~ 708 (1335)
..+++|+||||||||||+++|.+.+.+.. |++...| ++++++|++. ....||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999988753 4554422 5788999852 1246888
Q ss_pred HHhccCCC----C-----ChHHHHHHHHHhccHHH-Hh-hCCCCC-------CccccCCCCCCCHHHHHHHHHHHHHc--
Q 000713 709 ENILFGSP----M-----DSHQYQETLERCSLIKD-LE-LLPYGD-------NTEIGERGVNLSGGQKQRIQLARALY-- 768 (1335)
Q Consensus 709 eNIlfg~~----~-----~~~~~~~~~~~~~l~~d-l~-~l~~gd-------~t~ig~~g~~LSGGQkqRv~LARAl~-- 768 (1335)
+|+..+.. . ..++..+.++.+++..| .. ..+.|+ .....+++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88876532 1 12234445555554311 00 000000 02234678899999999999999997
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEe
Q 000713 769 --QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825 (1335)
Q Consensus 769 --~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~ 825 (1335)
.+|+++|+||||++||+...+++++.+.+. .+|.|+|++||+.+.+..||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 588999999999999999999998865543 56899999999988888899998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=217.22 Aligned_cols=160 Identities=32% Similarity=0.429 Sum_probs=121.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE-----------cC-------------e--EE----EEecCCcC
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV-----------YG-------------K--TA----YVSQTAWI 702 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v-----------~g-------------~--~a----yv~Q~~~i 702 (1335)
.++|+.++|+|+||-||||-++.|+|++.|.=|+-.- .| . +. ||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4689999999999999999999999999998765421 11 1 22 33333555
Q ss_pred CCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 703 ~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
..++|+|-+.-- .....++++++..+|.+-+ ++...+||||+-||++||-|+.+++|+|++|||+|-
T Consensus 177 ~KG~v~elLk~~--de~g~~devve~l~L~nvl-----------~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 177 VKGKVGELLKKV--DERGKFDEVVERLGLENVL-----------DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred hcchHHHHHHhh--hhcCcHHHHHHHhcchhhh-----------hhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 678888866421 1123566777777665544 345568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe
Q 000713 783 VDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS 825 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~ 825 (1335)
||...+-..-+.+......+|+||+|.||+..|.. +|.|-++-
T Consensus 244 LDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99998877765444444458999999999999986 58776653
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=222.70 Aligned_cols=171 Identities=21% Similarity=0.224 Sum_probs=123.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------------e--EEEEecCCc--CCCCCHHHHh
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------------K--TAYVSQTAW--IQTGSIRENI 711 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------------~--~ayv~Q~~~--i~~~Tv~eNI 711 (1335)
.++ +++|+||||||||||+.+|.+.+.+..|++...+ . +.|..|++- +...++++.-
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 9999999999999999999998877666654321 1 223334321 1222333321
Q ss_pred c----cCCCCChHHHHHHHHHhccHHHHhh--CCCCCCccccC---------CCCCCCHHHHHHHHHHHHHccC----CC
Q 000713 712 L----FGSPMDSHQYQETLERCSLIKDLEL--LPYGDNTEIGE---------RGVNLSGGQKQRIQLARALYQD----AD 772 (1335)
Q Consensus 712 l----fg~~~~~~~~~~~~~~~~l~~dl~~--l~~gd~t~ig~---------~g~~LSGGQkqRv~LARAl~~~----~~ 772 (1335)
. -+.+.+...+++.++.+++..+... .++|+-+.+.+ +..+||||||||++||||++.+ |+
T Consensus 100 ~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~ 179 (247)
T cd03275 100 SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAP 179 (247)
T ss_pred eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCC
Confidence 1 1344566778888888887644221 23444444432 2378999999999999999764 99
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEe
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~ 825 (1335)
++||||||++||+.....+.+.+.+...+|.|+|+|||+.+.+..||++++|.
T Consensus 180 ~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 180 FFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 99999999999999999998766555445899999999998888899999885
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-22 Score=202.60 Aligned_cols=197 Identities=26% Similarity=0.401 Sum_probs=155.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeE-------------E
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------------A 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~-------------a 694 (1335)
+.++|+..+ .-|-.+|.++..||+.-++|||||||||||..+.|+.+ -+|+|.++|.. +
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence 556666542 24677899999999999999999999999999999875 69999999953 7
Q ss_pred EEecCC-cCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc----
Q 000713 695 YVSQTA-WIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ---- 769 (1335)
Q Consensus 695 yv~Q~~-~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~---- 769 (1335)
|.+|+. -.|.+.|...+....|. .++..+.-+.|++ +..+| .+|+....||||+-|||-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~-~~~a~~i~~i~~~------L~l~D--KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPD-KTRTELLNDVAGA------LALDD--KLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCch-HHHHHHHHHHHhh------hcccc--hhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 888864 45677888888887664 3332222222322 22233 3567778999999999999988876
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-cccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 770 ---DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 770 ---~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+++|+|||-++||......+...+......|.+||+.+||++. +.++|++..++.|++...|..+|++..
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 467999999999999998777765554567789999999999975 889999999999999999999998754
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-22 Score=250.17 Aligned_cols=204 Identities=26% Similarity=0.428 Sum_probs=164.3
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--CCCcEEEEcCe----------E
Q 000713 627 AISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--HTQGTIQVYGK----------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~~~G~i~v~g~----------~ 693 (1335)
....+|+.+.-+.+ +.+..|+||+=-++||.++|++|+|||||||||+.|+|-.. -.+|+|.++|. +
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 34455555543222 34568999999999999999999999999999999999642 35788899983 6
Q ss_pred EEEecCC-cCCCCCHHHHhccCCC------C-ChHH---HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 694 AYVSQTA-WIQTGSIRENILFGSP------M-DSHQ---YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 694 ayv~Q~~-~i~~~Tv~eNIlfg~~------~-~~~~---~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
|||.|+. .+...||||-+.|... . ++++ .++|++-.+|++- -+..||..|..||..||+|+.
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceee
Confidence 9999976 5678899999988532 2 2233 3455555444322 235688888999999999999
Q ss_pred HHHHHccCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc--cccCCeEEEEe-CCeEEEecChHH
Q 000713 763 LARALYQDA-DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF--LPAFDSVLLMS-DGEILRAAPYHQ 837 (1335)
Q Consensus 763 LARAl~~~~-~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--l~~~D~iivl~-~G~i~~~g~~~~ 837 (1335)
||--|..+| .|++|||||||||+.++..+++.+.+....|+||+.+-||++- .+..|+++.|+ +|+.+..|+..+
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999 9999999999999999999998888888899999999999975 57789999996 689999998765
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=226.65 Aligned_cols=127 Identities=13% Similarity=0.248 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHhhcCCCCCCCccc------CCCC---CCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000713 1200 NYIISVERLNQYMHVPSEAPEVVE------DNRP---PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1270 (1335)
Q Consensus 1200 ~~~~sveRi~~y~~~~~E~~~~~~------~~~p---~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIV 1270 (1335)
+.|+++||+.+|...+.|.....+ +..+ +.+||..|.|+|+|++++|+++.+++|+||||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 568899999999888776543221 1111 4469999999999999999866667999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhccC-----CCCCeEEECCeecCC--------cCCCceeecccccccccHHhhH
Q 000713 1271 GRTGSGKTTLRGALFRLIE-----PARGKILVDGKLAEY--------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1271 GRTGSGKSTLi~aL~Rl~e-----~~~G~I~IDGvdI~~--------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||||||||||+++|+|+++ |++|+|.|||+||.. ++.++++||+|.+|++||+||.
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi 183 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNV 183 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHH
Confidence 9999999999999999997 579999999999952 4679999999999999999984
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=245.19 Aligned_cols=93 Identities=25% Similarity=0.490 Sum_probs=85.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQ---DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~---~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
++++..+||||||||+.|||++.+ +|++|||||||++||+...+.+.+.+.+...+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 577888999999999999999997 59999999999999999999998876665567999999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000713 823 LM------SDGEILRAAPYHQL 838 (1335)
Q Consensus 823 vl------~~G~i~~~g~~~~l 838 (1335)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-18 Score=189.45 Aligned_cols=268 Identities=19% Similarity=0.185 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 313 FMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF-KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIY 391 (1335)
Q Consensus 313 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy 391 (1335)
++..++.++..++..+.|++++.+++.+.++... ....+.++..+++..++.......+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999999999998765543 455666666666666777777777777789999999999999999
Q ss_pred HHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000713 392 RKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSV-QLCIALIILFHAVGL-ATIAALVVITITVLCNTP 469 (1335)
Q Consensus 392 ~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~pl-qi~lal~lL~~~lG~-a~l~gl~v~vl~~~~~~~ 469 (1335)
+|.++.+....+++++|+++|.+++|++++.+........+..++ .++.+++++ ..++| .+++.+++.++..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILL-FFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcc-cccccccccccchhhhhhHhhhhh
Confidence 999999998888889999999999999999998766554444443 444444444 34454 555556677778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHH--HH
Q 000713 470 LAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPV--LV 547 (1335)
Q Consensus 470 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~--lv 547 (1335)
+.|+.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+..++................. .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877666655555544444333322222 35
Q ss_pred HHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHH
Q 000713 548 STATFGACY-FLNVPLYASNVFTFVATLRLVQDPI 581 (1335)
Q Consensus 548 ~~~tF~~~~-l~~~~Lt~~~vFt~lalf~~L~~pl 581 (1335)
.++.++.+. ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 556777887 7788999999999999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-21 Score=214.80 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=124.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCC-CC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ-TG 705 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~-~~ 705 (1335)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|...+-...... -.++++|++|+.... +.
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCC
Confidence 36666665 564 3468888887 7999999999999999999982211110111 124688889887553 45
Q ss_pred CHHHHhccCCCCChHHHHHHHHHh-------------ccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc---
Q 000713 706 SIRENILFGSPMDSHQYQETLERC-------------SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ--- 769 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~-------------~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~--- 769 (1335)
|++++..+-...... +.++.. +...++..++.+. ..+...||+|||||++||||++.
T Consensus 75 ~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~----~~~~~~lS~G~~~r~~la~al~~~~~ 147 (212)
T cd03274 75 DSCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKS----WKNISNLSGGEKTLSSLALVFALHHY 147 (212)
T ss_pred ceEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeecccccc----ccchhhcCHHHHHHHHHHHHHHhccc
Confidence 788877654332110 000000 0001122233332 33456899999999999999974
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 770 -DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 770 -~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
+|++++|||||++||+.....+.+.+.+ ..++.|+|++||+.+....||+|++|..
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999988875554 4567899999999877778999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-20 Score=199.58 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=112.5
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC-----cE----EEE----cCeEEEEecCCcCCCCCHHHHhc
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-----GT----IQV----YGKTAYVSQTAWIQTGSIRENIL 712 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-----G~----i~v----~g~~ayv~Q~~~i~~~Tv~eNIl 712 (1335)
++++++++.+| +.+|+||||||||||+.+|...+.... |. +.- ...+.+.+|+.-+.. |-.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~~ 85 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NPL 85 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----CcC
Confidence 46778888887 889999999999999999874332211 21 000 123556666544332 200
Q ss_pred cCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHH
Q 000713 713 FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 713 fg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl----~~~~~ilLLDEP~saLD~~~~ 788 (1335)
. .....+.+++++ . .....+++.+||||||||++||||+ +.+|+++|||||+++||+...
T Consensus 86 ~--~~~~~~~~~~l~---------~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 86 C--VLSQDMARSFLT---------S-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred C--HHHHHHHHHHhc---------c-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 0 001112222221 1 1123467789999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHHHcC---CCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 789 SSLFNDYVMEALS---GKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 789 ~~i~~~~~~~~~~---~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
..+.+.+.+...+ ++|+|++||+++.+...|+|-+|+.|+
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9998866554332 368999999999999899999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-20 Score=207.40 Aligned_cols=198 Identities=21% Similarity=0.366 Sum_probs=148.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCc--
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW-- 701 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~-- 701 (1335)
+.+-+.|++|.|++. +|.+++++|-|.--+.+|||||||.||||||++|+|.+.|..|+..-+- +||+..|+.-
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 468899999999763 6899999999999999999999999999999999999999999987665 5788888653
Q ss_pred -CCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 000713 702 -IQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780 (1335)
Q Consensus 702 -i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~ 780 (1335)
-...|--|.+.-+-..+....++.+...+|..-- .| -+...||||||.||+||---+..|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HT---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HT---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ce---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2344777777533222223334444444443211 12 134579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCC-eEEEEeCCeEEE-ecChHHH
Q 000713 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFD-SVLLMSDGEILR-AAPYHQL 838 (1335)
Q Consensus 781 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D-~iivl~~G~i~~-~g~~~~l 838 (1335)
++||.++...+-+. +.. -+..||+||||-..+...| ..+|+++-.|-+ .|.+++.
T Consensus 733 NNLDIESIDALaEA-Ine--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred CCcchhhHHHHHHH-HHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 99999998777653 322 2457999999999987654 455666655533 3555543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=204.71 Aligned_cols=196 Identities=24% Similarity=0.372 Sum_probs=135.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC---CCCCCcEEEEcCeEEEEecCCcCC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE---VPHTQGTIQVYGKTAYVSQTAWIQ 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~---~~~~~G~i~v~g~~ayv~Q~~~i~ 703 (1335)
.|.++|.+.+-. ++..+.|.||.|-.|..+++|||||-||||||+-|..- +|| +=.+-||-|+..--
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-------nIDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-------NIDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-------CCceEeeeeeeeec
Confidence 478888887754 35688999999999999999999999999999999753 233 11245677765444
Q ss_pred CCCHHHHhccC---------------------CCCChHHHHHHHH---Hhcc-------HHHHhhCCCCCCccccCCCC-
Q 000713 704 TGSIRENILFG---------------------SPMDSHQYQETLE---RCSL-------IKDLELLPYGDNTEIGERGV- 751 (1335)
Q Consensus 704 ~~Tv~eNIlfg---------------------~~~~~~~~~~~~~---~~~l-------~~dl~~l~~gd~t~ig~~g~- 751 (1335)
+.|.-+.|+-. .....++.+++.+ +.+. .+-+. ..|...+.-+++.
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILA--GLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILA--GLGFSKEMQERPTT 411 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHh--hcCCChhHhcCCcc
Confidence 44444444321 1111122222211 1110 01112 2244445555554
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
.+|||-|-||+||||||..|.++.|||||+.||-....++- +.++++. ||.++|+||-.|+.. |..|+.+++-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLd-NYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLD-NYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehh-hHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 69999999999999999999999999999999998876663 4555553 899999999999986 7999999987763
Q ss_pred -EecChHH
Q 000713 831 -RAAPYHQ 837 (1335)
Q Consensus 831 -~~g~~~~ 837 (1335)
+.|+|.-
T Consensus 489 yYrGNY~~ 496 (807)
T KOG0066|consen 489 YYRGNYTL 496 (807)
T ss_pred hhcchHHH
Confidence 4566644
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=207.88 Aligned_cols=181 Identities=24% Similarity=0.335 Sum_probs=134.7
Q ss_pred eeEEEecCCCCCCceeeeeeEe-----eCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCC-cCCCC
Q 000713 632 SASFSWEESSSKPTMRNISLEV-----RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA-WIQTG 705 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i-----~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~-~i~~~ 705 (1335)
+.-++|++- +..+.+..|++ ..||+++++||||-||||+.+.|+|.++|++|. ..+=+++|=||-- --+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 334455431 23455566654 567889999999999999999999999999998 5566899999963 34899
Q ss_pred CHHHHhccCCC--CChHHHH-HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 706 SIRENILFGSP--MDSHQYQ-ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 706 Tv~eNIlfg~~--~~~~~~~-~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
||++-+.-..+ +...+|+ ++.+-..|++-+ ..+..+||||+.|||++|-||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998753222 3333333 333433443333 345568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 783 VDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
||.+.+-.+-+.+.+-. .+++|.++|-||+-.+.. +|+++|.+.
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99998765543333322 358999999999999987 599999863
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-20 Score=195.94 Aligned_cols=153 Identities=23% Similarity=0.205 Sum_probs=105.5
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeE--EEEecCCcCCCCCHHHHhccCCCCChHHHHHH
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--AYVSQTAWIQTGSIRENILFGSPMDSHQYQET 725 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~--ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~ 725 (1335)
+..+...++.+.+|+||||||||++|.+|.=.+--.+-....+... .+-...++-..+.|+ +.|
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f------------ 79 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF------------ 79 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEE------------
Confidence 3344443334999999999999999999854321111000000000 000011111111111 111
Q ss_pred HHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 000713 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY----QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801 (1335)
Q Consensus 726 ~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~ 801 (1335)
...+..+|.||.|++ ||||||||++|||++. .+|+++++|||+++||+...+.+.+.+.+...+
T Consensus 80 ------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~ 147 (178)
T cd03239 80 ------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH 147 (178)
T ss_pred ------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 222677899999987 9999999999999984 799999999999999999999998866555455
Q ss_pred CCEEEEEccCCCccccCCeEEEEeC
Q 000713 802 GKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 802 ~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|+|+|++||+.+.+..+|+++.+..
T Consensus 148 g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 148 TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 7999999999998888999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=206.36 Aligned_cols=208 Identities=25% Similarity=0.391 Sum_probs=169.0
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
.+..++++|++..=+ .+.+.++||||+|++||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|+
T Consensus 254 g~~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 254 GEVVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCeEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 456799999998543 2356899999999999999999999999999999999999999999999984
Q ss_pred ----EEEEecCC----cCCCCCHHHHhccCCCCCh-------HHHHHHHHH-hccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 ----TAYVSQTA----WIQTGSIRENILFGSPMDS-------HQYQETLER-CSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 ----~ayv~Q~~----~i~~~Tv~eNIlfg~~~~~-------~~~~~~~~~-~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+||||.+. .....|+.||+.++...++ -++.++.+. ..+.+.++.-+.+.. .+..+||||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGG 407 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGG 407 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCc
Confidence 47999875 4678899999987643221 011111111 123344443333332 345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~ 835 (1335)
++||+-+||-+..+|++++...||-|||....+.|.+.+++...+|+.|++++-|++++ ..+|+|.||.+|+|+...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 99999999999999999999999999999999999999999889999999999999986 56899999999999987776
Q ss_pred HH
Q 000713 836 HQ 837 (1335)
Q Consensus 836 ~~ 837 (1335)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 65
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=184.33 Aligned_cols=200 Identities=24% Similarity=0.414 Sum_probs=155.7
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEE---------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA--------- 694 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~a--------- 694 (1335)
.+.+|++.+..|+|+.. .|++-|+|++++.|....+||.|||||||||++|.|-.-.-.|.|.+.|+.+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 45789999999999864 4899999999999999999999999999999999998777779999988543
Q ss_pred ----EEec----------CCcCC-CCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 695 ----YVSQ----------TAWIQ-TGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 695 ----yv~Q----------~~~i~-~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
|.-- +..+| +.++ +..+||-.. +.+|.++.++...+ | +.=|.+.+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--d-----------l~WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--D-----------LRWRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--c-----------ceEEEeeccccch
Confidence 3211 11122 2233 344454432 33444444443211 1 2235678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
+||+||..|++.=+++||||.|--||.-.+..+.+-+.... .+|.|++++||-.+-++. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999988766554 479999999999988875 6999999999999977776
Q ss_pred HHH
Q 000713 837 QLL 839 (1335)
Q Consensus 837 ~l~ 839 (1335)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 664
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-20 Score=211.39 Aligned_cols=192 Identities=23% Similarity=0.416 Sum_probs=157.1
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC-
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA- 700 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~- 700 (1335)
..+.+++.+++|.|+++.. +.+.++++++.--+.++++|+||.||||+++++.|+..|..|.+.+.+ +++|-+|..
T Consensus 359 ~~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV 437 (582)
T ss_pred CCCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence 3457999999999987543 789999999999999999999999999999999999999999999887 589999964
Q ss_pred -cCC-CCCHHHHhc--c-CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 701 -WIQ-TGSIRENIL--F-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 701 -~i~-~~Tv~eNIl--f-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
|+. +.+.-|-.. | |. .++.|++.+...++..++..-+ ...||||||-||++|.+...+|.+|+
T Consensus 438 d~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEE
Confidence 321 222233222 2 22 5677888888888887776432 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|||||+.||.++-..+-+.+. . =+-.||+||||.+++.. |+.+.+.+||++..
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~-~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALK-N--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ecCCCccccHHHHHHHHHHHH-h--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999876654322 1 14579999999999986 79999999999975
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=178.47 Aligned_cols=221 Identities=21% Similarity=0.289 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHH
Q 000713 967 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACS 1046 (1335)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~ 1046 (1335)
++...+.....+.....+.+..+++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..+..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~ 131 (275)
T PF00664_consen 52 LLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF 131 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh
Confidence 33444444444455688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHh
Q 000713 1047 NLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLID 1126 (1335)
Q Consensus 1047 ~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld 1126 (1335)
.++++...+|++.++.+...++++.+..++.+..++..+......+...+++.|.++|+++||+|+.|+++.+++.+..+
T Consensus 132 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~ 211 (275)
T PF00664_consen 132 SLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALE 211 (275)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998888888888999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-cCCCCcCHHHHHHHHHHHHHHHHH
Q 000713 1127 TNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVL-LPPGTFTPGFIGMALSYGLSLNSS 1187 (1335)
Q Consensus 1127 ~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~-~~~~~~~~g~~Glalsy~l~l~~~ 1187 (1335)
+..+........+.|.....+.+..+...++ .+.... ...|.+++|.+-..++|...+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 212 KYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999998899999988888887744443 333444 457889999998888888877654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=219.10 Aligned_cols=94 Identities=23% Similarity=0.400 Sum_probs=85.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDA--DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~--~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iiv 823 (1335)
.++...+|||||||||+|||||.++| ++|||||||++||++....+++.+.+...+|+|||+|+|+++++..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46778899999999999999999997 9999999999999999999998777666679999999999999888999999
Q ss_pred E------eCCeEEEecChHHHH
Q 000713 824 M------SDGEILRAAPYHQLL 839 (1335)
Q Consensus 824 l------~~G~i~~~g~~~~l~ 839 (1335)
| ++|+|+..|+++++.
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred eccccCCCCCEEeeccCHHHHh
Confidence 9 899999999887763
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-18 Score=198.29 Aligned_cols=91 Identities=30% Similarity=0.559 Sum_probs=84.8
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
|+|+|+|++++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|.|||+|+.. ++.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6899999999998666679999999999999999999999999999999999998 78999999999865 3579
Q ss_pred ceeecccccccccHHhhH
Q 000713 1309 ELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1309 ~lV~Qep~LFsGTIrE~~ 1326 (1335)
+++||+|.+|.+||+||.
T Consensus 80 ~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred EEECCCcccchhhHHHHh
Confidence 999999999999999984
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=188.56 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=109.0
Q ss_pred ceeeeeeEeeCCc-EEEEEcCCCCCHHHHHHHHh--------cCCCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCC
Q 000713 645 TMRNISLEVRPGQ-KVAICGEVGSGKSTLLAAIL--------GEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 645 ~L~~isl~i~~G~-~v~IvG~~GsGKSTLL~~il--------G~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~ 715 (1335)
...++|+++++|+ +++|+|||||||||||++|. |...|....+ .++|+.|.--
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~~~~-------------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFENIFA-------------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccEEEE--------------
Confidence 3567899999995 79999999999999999998 5444432211 1223222210
Q ss_pred CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~ 795 (1335)
.+ ++...+.+...++|+|||||..+++++ .+|+++++|||++++|+..+..+...+
T Consensus 78 ---------------------~l--g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 78 ---------------------DI--GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ---------------------ec--CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 00 011112334568999999999999985 899999999999999999999887655
Q ss_pred HHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 796 VME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 796 ~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
++. ...+.|+|++||+.+....+|+++.|++|++...
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 134 LEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 544 3458999999999766677899999999999765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=178.82 Aligned_cols=215 Identities=20% Similarity=0.316 Sum_probs=155.5
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEE-----EEc-----------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-----QVY----------- 690 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i-----~v~----------- 690 (1335)
+.++|++.....+. ...+++++|+++.+||+-++||++|||||-..++|.|..+- .=.| .++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHH
Confidence 45667666664332 34589999999999999999999999999999999998642 2222 111
Q ss_pred ------CeEEEEecCCcC---CCCCHH----HHhcc----CCC-----CChHHHHHHHHHhccHHHHhhCCCCCCccccC
Q 000713 691 ------GKTAYVSQTAWI---QTGSIR----ENILF----GSP-----MDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 691 ------g~~ayv~Q~~~i---~~~Tv~----eNIlf----g~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 748 (1335)
-.++.++|+|.- ++.+|- +||-+ |+- ..+.+.-+.+.+.+..+ +.| ....
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd------HkD--IM~S 154 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD------HKD--IMRS 154 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc------HHH--HHHh
Confidence 136899999853 334443 44432 110 11222333444444432 111 1245
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
.+.+|--|+-|+|.||.|+..+|++++.||||+++|+.++.+||..+-+.. ..|.|+++++||+..+.+ ||+|-||.-
T Consensus 155 YP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred CcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 677899999999999999999999999999999999999999998665443 358899999999999875 899999999
Q ss_pred CeEEEecChHHHHhcch--HHHHHHHH
Q 000713 827 GEILRAAPYHQLLASSK--EFQELVSA 851 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~~~--~~~~l~~~ 851 (1335)
|+-+++++.+++.+... ..+.++.+
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHHHh
Confidence 99999999999986542 33444444
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-15 Score=180.59 Aligned_cols=353 Identities=18% Similarity=0.172 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCch------hhHHHHhcChhHHHhhh
Q 000713 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG------RILSRVSSDLSIVDLDI 1030 (1335)
Q Consensus 957 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~G------rIlnRfS~D~~~vD~~l 1030 (1335)
..+.+|..++.+..+....+.++-....++.-.-|-+.+++.-+..- +||-..-.| ..=+|...|+...-...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 44788888998888888889998888888888888888888888776 544333332 33457777776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH----HHHHHH-HHHHHHHHHHHHHhHHHHHHHHcccc
Q 000713 1031 PFSLIFAVGATTNACSNLGVLA--------------VVTWQVL----FVSIPV-IFLAIRLQRYYFVTAKELMRLNGTTK 1091 (1335)
Q Consensus 1031 p~~~~~~~~~~~~~~~~l~vi~--------------~~~~~~~----~~~ipl-~~~~~~~q~~y~~tsrel~Rl~~~~r 1091 (1335)
-.....++.+++++++-.++.- +..|.++ ++.+++ .++.++++|...+-+-+-.++|+.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 4444445555554444333332 0111111 111222 22334667777777777777888777
Q ss_pred chHHHHHHHHHcchHHHHhccc---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000713 1092 SLVANHLAESIAGAMTIRAFEE---EDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGT 1168 (1335)
Q Consensus 1092 Spi~s~f~Etl~G~~tIRAf~~---e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~ 1168 (1335)
+-+. .+.| ....|-.|+- |.+..++....+..+.+.......--.|+..-...++.++-...+. -. ...|.
T Consensus 246 ~~Lv-rv~e---naE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~a-p~-~f~g~ 319 (604)
T COG4178 246 YSLV-RVRE---NAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAA-PR-YFSGQ 319 (604)
T ss_pred HHHH-HHHh---hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhcc-Hh-hhcCc
Confidence 6543 2334 3444555554 4455554444444444433333333334443333333311111111 11 22578
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-C-----CCCCCCcccCCCCCCCCCc--cceEEEE
Q 000713 1169 FTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMH-V-----PSEAPEVVEDNRPPPNWPV--VGKVDIC 1240 (1335)
Q Consensus 1169 ~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~-~-----~~E~~~~~~~~~p~~~WP~--~G~I~f~ 1240 (1335)
++-|-+..+.+--.++...+.|++.++..+.+--.++.|+.++.+ + ++|.+.... +.-.--. ...|+|+
T Consensus 320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~ 396 (604)
T COG4178 320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG---RRIDFDDNADHGITLE 396 (604)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc---ccccccccccceeEEe
Confidence 888888888888889999999999999999999999999999973 2 222211100 0000001 4789999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeecccccccc
Q 000713 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQ 1320 (1335)
Q Consensus 1241 nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Qep~LFsG 1320 (1335)
|++++-+++. ..|++++|+|+|||.+-|.|++|||||||+.+|.++.+--+|+|.+- .-...-.+||.|++=.|
T Consensus 397 nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----~~~~~lflpQ~PY~p~G 470 (604)
T COG4178 397 NLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----ADSALLFLPQRPYLPQG 470 (604)
T ss_pred eeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----CCCceEEecCCCCCCCc
Confidence 9999987666 69999999999999999999999999999999999999999998765 23456789999999999
Q ss_pred cHHhh
Q 000713 1321 LVKEY 1325 (1335)
Q Consensus 1321 TIrE~ 1325 (1335)
|.||.
T Consensus 471 tLre~ 475 (604)
T COG4178 471 TLREA 475 (604)
T ss_pred cHHHH
Confidence 99994
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=180.49 Aligned_cols=175 Identities=19% Similarity=0.163 Sum_probs=107.1
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcE---------EEEcC----eEEEEecC-CcCCCCCHHHHh
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT---------IQVYG----KTAYVSQT-AWIQTGSIRENI 711 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~---------i~v~g----~~ayv~Q~-~~i~~~Tv~eNI 711 (1335)
++++.+++.+| +.+|+|+|||||||||.+|.-.+-..... ..-.| .+-...+. ++- =..+|+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~---~~~~n~ 89 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN---IQVDNL 89 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc---cccCCc
Confidence 35666777666 88999999999999999986544221100 00011 01111111 110 122333
Q ss_pred ccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHH
Q 000713 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 712 lfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl----~~~~~ilLLDEP~saLD~~~ 787 (1335)
.+- .+.++..+.... .-.+-+..++.+++. -..++.+||||||||+.+|+++ +.+|+++++|||+++||+..
T Consensus 90 ~~~--~~q~~~~~~~~~-~~~e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~ 165 (213)
T cd03277 90 CQF--LPQDRVGEFAKL-SPIELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN 165 (213)
T ss_pred eEE--EchHHHHHHHhC-ChHhHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH
Confidence 221 122222222111 111122233433332 2457789999999999877554 58999999999999999999
Q ss_pred HHHHHHHHHHHHcC-C-CEEEEEccCCCc-cccCC--eEEEEeCCe
Q 000713 788 ASSLFNDYVMEALS-G-KVVLLVTHQVDF-LPAFD--SVLLMSDGE 828 (1335)
Q Consensus 788 ~~~i~~~~~~~~~~-~-~TvIlvTH~~~~-l~~~D--~iivl~~G~ 828 (1335)
+..+++.+.+...+ | .|+|++||++.. +..+| +|++|++|+
T Consensus 166 ~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 166 ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999877665544 5 589999999865 44554 889999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=194.24 Aligned_cols=98 Identities=23% Similarity=0.472 Sum_probs=90.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeE
Q 000713 745 EIGERGVNLSGGQKQRIQLARALYQDA---DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSV 821 (1335)
Q Consensus 745 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~i 821 (1335)
.+|+...+||||+-|||-||.-|..++ -+|+|||||.||..+-.+++.+-+.+...+|.|||+|.|+++.++.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 468999999999999999999999887 99999999999999999999987777778899999999999999999999
Q ss_pred EEE------eCCeEEEecChHHHHhcc
Q 000713 822 LLM------SDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 822 ivl------~~G~i~~~g~~~~l~~~~ 842 (1335)
+-| +.|+|+.+|+|+|+.+..
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 999 368999999999997643
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=184.16 Aligned_cols=221 Identities=26% Similarity=0.375 Sum_probs=157.7
Q ss_pred HHHHHhcCCCCCcccc---cccCCCCCCcccEEEEeeEEEecCC-----------------------CCCCceeeeeeEe
Q 000713 600 RIVNFLEAPELQSMNI---RQKGNIENVNRAISIKSASFSWEES-----------------------SSKPTMRNISLEV 653 (1335)
Q Consensus 600 RI~~fL~~~e~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~~-----------------------~~~~~L~~isl~i 653 (1335)
-|.+|+..+++..... ++....+.-+..+.++|++..+.+. ....+++|+||++
T Consensus 327 ~i~rf~~~d~~A~~h~L~~pRyr~ve~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~i 406 (593)
T COG2401 327 YIDRFVGEDPMAYPHLLLAPRYRMVEKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEI 406 (593)
T ss_pred HHHHHhccCccccccceeccccccccccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEe
Confidence 3567887766533221 1111111134457777777766431 1235899999999
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcCC--------CCCCcEEEEcCe--EEEEecC--CcCCCCCHHHHhccCCCCChHH
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEV--------PHTQGTIQVYGK--TAYVSQT--AWIQTGSIRENILFGSPMDSHQ 721 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKSTLL~~ilG~~--------~~~~G~i~v~g~--~ayv~Q~--~~i~~~Tv~eNIlfg~~~~~~~ 721 (1335)
++|++++|+|+|||||||+|++|+|.+ +|++|.|.+--+ .+.+|-+ |-+-.-|+.|.+.- ..-|...
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s-~tGD~~~ 485 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS-KTGDLNA 485 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhh-ccCchhH
Confidence 999999999999999999999999874 688998887433 2445543 33334467666532 2223333
Q ss_pred HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-c
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-L 800 (1335)
Q Consensus 722 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~ 800 (1335)
..+++...++. |...--.+..+||-|||.|..||+++..+|.+++.||--|.||+.++..+...+-+.. .
T Consensus 486 AveILnraGls---------DAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 486 AVEILNRAGLS---------DAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred HHHHHHhhccc---------hhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 44556555553 3333345667899999999999999999999999999999999999999988776554 3
Q ss_pred CCCEEEEEccCCCccccC--CeEEEEeCCeEE
Q 000713 801 SGKVVLLVTHQVDFLPAF--DSVLLMSDGEIL 830 (1335)
Q Consensus 801 ~~~TvIlvTH~~~~l~~~--D~iivl~~G~i~ 830 (1335)
.|.|.+.+||+.++.... |+++.+.=|+..
T Consensus 557 ~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 557 AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 589999999999998763 999988776654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=181.10 Aligned_cols=96 Identities=41% Similarity=0.748 Sum_probs=88.7
Q ss_pred CCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------
Q 000713 1231 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------ 1304 (1335)
Q Consensus 1231 WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------ 1304 (1335)
||..|.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 99999999999999996543469999999999999999999999999999999999999999999999999853
Q ss_pred cCCCceeecccccccccHHhhH
Q 000713 1305 DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 ~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
++.+++++|+|.+|.+|++||.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred HhhEEEEecCCcccCccHHHHh
Confidence 4578999999999999999984
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=167.80 Aligned_cols=135 Identities=24% Similarity=0.311 Sum_probs=99.0
Q ss_pred eeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--EE-EEecCCcCCCCCHHHHhccCCCCChHHHHHH
Q 000713 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TA-YVSQTAWIQTGSIRENILFGSPMDSHQYQET 725 (1335)
Q Consensus 649 isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--~a-yv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~ 725 (1335)
.++.+.+|.+++|+|||||||||+++++....-..+|.+..... .+ ++++... .|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~------------ 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA----------EL------------ 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE----------EE------------
Confidence 34455566799999999999999999986655444444332111 01 0111000 00
Q ss_pred HHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 000713 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ----DADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801 (1335)
Q Consensus 726 ~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~----~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~ 801 (1335)
. .+ -.+||+||+||++|||++.. +|+++|+|||++++|++.+..+.+.+.+...+
T Consensus 72 -----------i-----~~-----~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 72 -----------I-----FT-----RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred -----------e-----hh-----eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0 00 01399999999999999986 78999999999999999999998877665545
Q ss_pred CCEEEEEccCCCccccCCeEEEEeC
Q 000713 802 GKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 802 ~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
+.++|++||+.+....+|+++.|+.
T Consensus 131 ~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 7899999999999988999999964
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=210.23 Aligned_cols=105 Identities=26% Similarity=0.347 Sum_probs=92.5
Q ss_pred hCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC
Q 000713 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD---ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD 813 (1335)
Q Consensus 737 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~---~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 813 (1335)
....|+. .+|+...+|||||.|||-||.-|..+ +.+|+|||||.||+++..+++.+.+.+...+|.|||+|.||++
T Consensus 1685 ~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~ 1763 (1809)
T PRK00635 1685 DNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA 1763 (1809)
T ss_pred HcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3344554 36899999999999999999999875 7999999999999999999998876666788999999999999
Q ss_pred ccccCCeEEEEe------CCeEEEecChHHHHhcc
Q 000713 814 FLPAFDSVLLMS------DGEILRAAPYHQLLASS 842 (1335)
Q Consensus 814 ~l~~~D~iivl~------~G~i~~~g~~~~l~~~~ 842 (1335)
.++.||+|+-|. .|+|+..|+|+++.+..
T Consensus 1764 ~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1764 LLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 999999999994 58999999999997643
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-16 Score=167.18 Aligned_cols=88 Identities=35% Similarity=0.467 Sum_probs=81.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecC-------CcCCC
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAE-------YDEPM 1308 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~-------~~~~i 1308 (1335)
-|+++||+.+|... .||||||++|++||.|.||||+|||||||+.+|-+|-+|++|+|.|||.++. .|+.+
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999743 4999999999999999999999999999999999999999999999998775 36789
Q ss_pred ceeecccccc-cccHHhh
Q 000713 1309 ELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LF-sGTIrE~ 1325 (1335)
|.|.|...|| .-||.||
T Consensus 80 GmVFQ~fnLFPHlTvleN 97 (240)
T COG1126 80 GMVFQQFNLFPHLTVLEN 97 (240)
T ss_pred CeecccccccccchHHHH
Confidence 9999999999 7899987
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-16 Score=174.76 Aligned_cols=89 Identities=22% Similarity=0.388 Sum_probs=83.2
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------
Q 000713 1237 VDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY--------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~---~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~--------- 1304 (1335)
|+++||+..|... .+.+|+|||++|++||..||+|++|||||||+.++-|+-+|++|+|.+||.|+..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 3579999999999999999999999999999999999999999999999999975
Q ss_pred cCCCceeeccccccc-ccHHhh
Q 000713 1305 DEPMELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1305 ~~~i~lV~Qep~LFs-GTIrE~ 1325 (1335)
|++++++.|++.|++ -||.||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~N 103 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFEN 103 (339)
T ss_pred HhhccEEeccccccccchHHhh
Confidence 578999999999997 999997
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-16 Score=168.03 Aligned_cols=89 Identities=28% Similarity=0.494 Sum_probs=81.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCcee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPMELM 1311 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV 1311 (1335)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 57999999997543469999999999999999999999999999999999999999999999998853 4568999
Q ss_pred ecccccccccHHhh
Q 000713 1312 KREGSLFGQLVKEY 1325 (1335)
Q Consensus 1312 ~Qep~LFsGTIrE~ 1325 (1335)
+|++.+|.+|++||
T Consensus 81 ~q~~~~~~~tv~~~ 94 (178)
T cd03247 81 NQRPYLFDTTLRNN 94 (178)
T ss_pred ccCCeeecccHHHh
Confidence 99999999999998
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-16 Score=180.22 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=82.6
Q ss_pred ccceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----
Q 000713 1233 VVGKVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----- 1304 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~---~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~----- 1304 (1335)
....|+++|++++|... ..++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.++..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 33469999999999643 2369999999999999999999999999999999999999999999999988743
Q ss_pred -----------------cCCCceeeccc--ccccccHHhh
Q 000713 1305 -----------------DEPMELMKREG--SLFGQLVKEY 1325 (1335)
Q Consensus 1305 -----------------~~~i~lV~Qep--~LFsGTIrE~ 1325 (1335)
++.+++|+|+| .+|.+||+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~en 137 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHH
Confidence 34689999998 7999999997
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-16 Score=176.24 Aligned_cols=93 Identities=33% Similarity=0.566 Sum_probs=85.4
Q ss_pred ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cC
Q 000713 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DE 1306 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~ 1306 (1335)
..|.|+++|++++|......+|+|+||+|+|||.+||+|++|||||||+++|.|++.|++|+|.+||.++.. ++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 468899999999996543569999999999999999999999999999999999999999999999999864 35
Q ss_pred CCceeecccccccccHHhh
Q 000713 1307 PMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1307 ~i~lV~Qep~LFsGTIrE~ 1325 (1335)
.+++++|+|.+|.+||+||
T Consensus 96 ~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 96 RLSIILQDPILFSGSIRFN 114 (257)
T ss_pred hEEEECCCCcccccHHHHh
Confidence 6899999999999999987
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-16 Score=172.03 Aligned_cols=92 Identities=40% Similarity=0.710 Sum_probs=84.4
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.. ++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 6799999999997544469999999999999999999999999999999999999999999999999853 4568
Q ss_pred ceeecccccccccHHhhH
Q 000713 1309 ELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1309 ~lV~Qep~LFsGTIrE~~ 1326 (1335)
++++|++.+|.+|++||.
T Consensus 81 ~~~~q~~~l~~~tv~enl 98 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNL 98 (221)
T ss_pred EEECCCCccccchHHHHh
Confidence 999999999999999974
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-16 Score=164.96 Aligned_cols=89 Identities=27% Similarity=0.566 Sum_probs=81.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997544469999999999999999999999999999999999999999999999999864 457899
Q ss_pred eecccccccccHHhh
Q 000713 1311 MKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1311 V~Qep~LFsGTIrE~ 1325 (1335)
++|++.+|.+|++||
T Consensus 81 ~~q~~~~~~~tv~~~ 95 (173)
T cd03246 81 LPQDDELFSGSIAEN 95 (173)
T ss_pred ECCCCccccCcHHHH
Confidence 999999999999997
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=173.45 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCC
Q 000713 752 NLSGGQKQRIQLARALYQ----DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDG 827 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~----~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G 827 (1335)
+||||||||++||++++. +|+++++|||+++||+.....+.+.+.. ..++.|+|++||+++....+|+++.|++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~-~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE-LSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 499999999999997643 9999999999999999999998876544 44578999999999977789999999876
Q ss_pred e
Q 000713 828 E 828 (1335)
Q Consensus 828 ~ 828 (1335)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-16 Score=177.52 Aligned_cols=91 Identities=24% Similarity=0.399 Sum_probs=81.7
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------
Q 000713 1236 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------- 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------- 1304 (1335)
.|+++||+++|.++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 369999999999999999999999999999999999999999999999999853
Q ss_pred --cCCCceeeccc--ccccccHHhhH
Q 000713 1305 --DEPMELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1305 --~~~i~lV~Qep--~LFsGTIrE~~ 1326 (1335)
++.+++++|+| .+|..||+||.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i 107 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREI 107 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHH
Confidence 35689999998 69999999973
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-16 Score=161.21 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=82.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+|+||+.+|..+ +++|+||||+|++||-+=++|++||||||++++|+|...|+.|+|.++|.|++. |++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 779999999999999999999999999999999999999999999999999985 578
Q ss_pred Cceeecccccc-cccHHhh
Q 000713 1308 MELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~LF-sGTIrE~ 1325 (1335)
||+|.||--|. +-||.||
T Consensus 81 IGvVFQD~rLL~~~tvyeN 99 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYEN 99 (223)
T ss_pred eeeEeeeccccccchHhhh
Confidence 99999998865 7899987
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-16 Score=170.58 Aligned_cols=90 Identities=22% Similarity=0.362 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCcee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPMELM 1311 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV 1311 (1335)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.+++. ++.++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 57999999996432469999999999999999999999999999999999999999999999999864 3568999
Q ss_pred ecccccc-cccHHhhH
Q 000713 1312 KREGSLF-GQLVKEYW 1326 (1335)
Q Consensus 1312 ~Qep~LF-sGTIrE~~ 1326 (1335)
+|++.+| +.|++||.
T Consensus 81 ~q~~~~~~~~tv~~~l 96 (220)
T cd03263 81 PQFDALFDELTVREHL 96 (220)
T ss_pred cCcCCccccCCHHHHH
Confidence 9999999 68999973
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-16 Score=170.12 Aligned_cols=90 Identities=19% Similarity=0.344 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|..+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 78999999996543469999999999999999999999999999999999999999999999999853 346
Q ss_pred Cceeeccccccc-ccHHhhH
Q 000713 1308 MELMKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1308 i~lV~Qep~LFs-GTIrE~~ 1326 (1335)
+++++|++.+|. .||+||.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l 101 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNV 101 (216)
T ss_pred ceEEecCccccccccHHHHH
Confidence 899999999986 5999973
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-16 Score=167.03 Aligned_cols=87 Identities=30% Similarity=0.465 Sum_probs=82.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
|+|+||+.+|. ...+++|+||+|++||-+.++|+|||||||++..+-|++||++|+|+|||.||+. |..||+
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999997 3459999999999999999999999999999999999999999999999999996 678999
Q ss_pred eecccccc-cccHHhh
Q 000713 1311 MKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1311 V~Qep~LF-sGTIrE~ 1325 (1335)
|-|...|| .-||.||
T Consensus 80 viQqigLFPh~Tv~eN 95 (309)
T COG1125 80 VIQQIGLFPHLTVAEN 95 (309)
T ss_pred hhhhcccCCCccHHHH
Confidence 99999999 8999997
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-16 Score=169.77 Aligned_cols=89 Identities=29% Similarity=0.400 Sum_probs=80.2
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC----------
Q 000713 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------- 1304 (1335)
|+++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 469999999999999999999999999999999999999999999999999864
Q ss_pred cCCCceeecccccccc-cHHhh
Q 000713 1305 DEPMELMKREGSLFGQ-LVKEY 1325 (1335)
Q Consensus 1305 ~~~i~lV~Qep~LFsG-TIrE~ 1325 (1335)
+..+++++|++.+|.+ ||+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~ 102 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALEN 102 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHH
Confidence 2468999999999976 99997
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=175.44 Aligned_cols=90 Identities=29% Similarity=0.469 Sum_probs=81.4
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------
Q 000713 1236 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------- 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------- 1304 (1335)
.|+++||+++|.+.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999996432 369999999999999999999999999999999999999999999999999864
Q ss_pred cCCCceeeccc--ccccccHHhh
Q 000713 1305 DEPMELMKREG--SLFGQLVKEY 1325 (1335)
Q Consensus 1305 ~~~i~lV~Qep--~LFsGTIrE~ 1325 (1335)
+..+++++|+| .+|..||+|+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~ 104 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKD 104 (287)
T ss_pred hhceEEEecCchhccccccHHHH
Confidence 35689999998 5889999997
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=167.54 Aligned_cols=82 Identities=26% Similarity=0.435 Sum_probs=77.0
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeec
Q 000713 1237 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Q 1313 (1335)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| .+++++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 57999999997542 4699999999999999999999999999999999999999999999999 6899999
Q ss_pred ccccccccHHhh
Q 000713 1314 EGSLFGQLVKEY 1325 (1335)
Q Consensus 1314 ep~LFsGTIrE~ 1325 (1335)
+|.+|++|++||
T Consensus 74 ~~~l~~~t~~en 85 (204)
T cd03250 74 EPWIQNGTIREN 85 (204)
T ss_pred CchhccCcHHHH
Confidence 999999999997
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=168.09 Aligned_cols=90 Identities=27% Similarity=0.385 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCc
Q 000713 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPME 1309 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~ 1309 (1335)
|+++||+++|.... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 68999999996431 269999999999999999999999999999999999999999999999999864 35789
Q ss_pred eeecccccccc-cHHhhH
Q 000713 1310 LMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep~LFsG-TIrE~~ 1326 (1335)
+++|++.+|.+ ||+||.
T Consensus 82 ~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 82 FVSDSTGLYDRLTARENL 99 (218)
T ss_pred EecCCcccCcCCCHHHHH
Confidence 99999999985 999983
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-15 Score=170.89 Aligned_cols=90 Identities=33% Similarity=0.655 Sum_probs=82.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
|+++|++++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+.. ++.+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999997544569999999999999999999999999999999999999999999999999864 346899
Q ss_pred eecccccccccHHhhH
Q 000713 1311 MKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1311 V~Qep~LFsGTIrE~~ 1326 (1335)
++|++.+|..||+||.
T Consensus 81 ~~q~~~~~~~tv~~nl 96 (237)
T cd03252 81 VLQENVLFNRSIRDNI 96 (237)
T ss_pred EcCCchhccchHHHHh
Confidence 9999999999999973
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-15 Score=169.75 Aligned_cols=87 Identities=30% Similarity=0.489 Sum_probs=80.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcC------CCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE------PME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~------~i~ 1309 (1335)
.++++|++++|. ..++|+||||+|++||.++|+||+|||||||+++|.|+..|.+|+|.+||.||...+ .++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 446999999999999999999999999999999999999999999999999998753 789
Q ss_pred eeeccc-ccccccHHh
Q 000713 1310 LMKREG-SLFGQLVKE 1324 (1335)
Q Consensus 1310 lV~Qep-~LFsGTIrE 1324 (1335)
+|||++ .-|.-||+|
T Consensus 80 ~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 80 YVPQSPSAPFGLTVYE 95 (258)
T ss_pred EeccCCCCCCCcEEee
Confidence 999995 678889988
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=169.22 Aligned_cols=91 Identities=26% Similarity=0.342 Sum_probs=81.6
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCc--------
Q 000713 1236 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD-------- 1305 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~-------- 1305 (1335)
-++++||+++|..+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 4699999999999999999999999999999999999999999999999998642
Q ss_pred --CCCceeecccccccc-cHHhhH
Q 000713 1306 --EPMELMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1306 --~~i~lV~Qep~LFsG-TIrE~~ 1326 (1335)
+.+++++|++.+|.+ ||+||.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l 108 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENV 108 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHH
Confidence 458999999999965 999983
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-16 Score=173.00 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=106.5
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEE-EEecCCcCCCCCHHHHhccCCCCChHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA-YVSQTAWIQTGSIRENILFGSPMDSHQ 721 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~a-yv~Q~~~i~~~Tv~eNIlfg~~~~~~~ 721 (1335)
+.+.+|++++.++|++++|.|||||||||+++.+.= +.+-.++| |||.+... ..+.|.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~--~~~~~~----------- 75 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSAD--IPIVDC----------- 75 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEE--Eeccce-----------
Confidence 468999999999999999999999999999999871 11111222 44443210 001111
Q ss_pred HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL--YQDADIYLLDDP---FSAVDAHTASSLFNDYV 796 (1335)
Q Consensus 722 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl--~~~~~ilLLDEP---~saLD~~~~~~i~~~~~ 796 (1335)
+++..++. |. ...++|.|++|+..+++++ ..+|+++||||| |+++|+.......-+.+
T Consensus 76 ---il~~~~l~---------d~-----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 76 ---ILARVGAS---------DS-----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred ---eEeeeccc---------cc-----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 11111111 11 1346999999999999999 899999999999 88899987754431222
Q ss_pred HHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 797 MEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 797 ~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
.. ..+.++|++||+.+....+|++..+++|++...++
T Consensus 139 ~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 139 AT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred Hh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 11 34789999999755556689999999999976553
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=167.05 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=79.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|..+ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999864 246
Q ss_pred Cceeeccccccc-ccHHhh
Q 000713 1308 MELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~LFs-GTIrE~ 1325 (1335)
+++++|++.+|. .|++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~ 98 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYEN 98 (214)
T ss_pred eEEEecCchhccCCcHHHH
Confidence 899999999997 599997
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-15 Score=176.80 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=81.8
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------c
Q 000713 1237 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------D 1305 (1335)
Q Consensus 1237 I~f~nv~~rY~~~--~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~ 1305 (1335)
|+++||+++|+.+ ..+||+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.. +
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 2469999999999999999999999999999999999999999999999999964 4
Q ss_pred CCCceeecccccc-cccHHhhH
Q 000713 1306 EPMELMKREGSLF-GQLVKEYW 1326 (1335)
Q Consensus 1306 ~~i~lV~Qep~LF-sGTIrE~~ 1326 (1335)
+.+++++|++.|| +.||+||.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni 103 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNV 103 (343)
T ss_pred cCEEEEECCccccccCcHHHHH
Confidence 5799999999999 48999983
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=173.63 Aligned_cols=90 Identities=26% Similarity=0.390 Sum_probs=81.3
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------
Q 000713 1237 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY--------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~--------- 1304 (1335)
|+++||+++|.++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999852
Q ss_pred -cCCCceeeccc--ccccccHHhhH
Q 000713 1305 -DEPMELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1305 -~~~i~lV~Qep--~LFsGTIrE~~ 1326 (1335)
+..+++|+|+| .+|..||.|+.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l 106 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDV 106 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHH
Confidence 34689999998 79999999973
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=160.08 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=77.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeecccc
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGS 1316 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Qep~ 1316 (1335)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||. +.+++++|++.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~ 74 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPY 74 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCc
Confidence 5799999999644 45999999999999999999999999999999999999999999999984 67899999999
Q ss_pred cccccHHhhH
Q 000713 1317 LFGQLVKEYW 1326 (1335)
Q Consensus 1317 LFsGTIrE~~ 1326 (1335)
+|++|++||.
T Consensus 75 ~~~~tv~~nl 84 (166)
T cd03223 75 LPLGTLREQL 84 (166)
T ss_pred cccccHHHHh
Confidence 9999999984
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=167.86 Aligned_cols=88 Identities=27% Similarity=0.467 Sum_probs=79.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-------cCCCc
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------DEPME 1309 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------~~~i~ 1309 (1335)
|+++||+++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999963 359999999999999999999999999999999999999999999999998864 24589
Q ss_pred eeecccccccc-cHHhhH
Q 000713 1310 LMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep~LFsG-TIrE~~ 1326 (1335)
+++|++.+|.+ |++||.
T Consensus 79 ~~~q~~~~~~~~t~~~~l 96 (222)
T cd03224 79 YVPEGRRIFPELTVEENL 96 (222)
T ss_pred EeccccccCCCCcHHHHH
Confidence 99999999986 999973
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=166.87 Aligned_cols=88 Identities=28% Similarity=0.413 Sum_probs=79.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC----cCCCceee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----DEPMELMK 1312 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~----~~~i~lV~ 1312 (1335)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|++. +..+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 578999999964 459999999999999999999999999999999999999999999999999864 34689999
Q ss_pred ccccccc-ccHHhhH
Q 000713 1313 REGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1313 Qep~LFs-GTIrE~~ 1326 (1335)
|++.+|. .||+|+.
T Consensus 79 q~~~~~~~~tv~~~l 93 (213)
T cd03259 79 QDYALFPHLTVAENI 93 (213)
T ss_pred CchhhccCCcHHHHH
Confidence 9999985 6999984
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=168.35 Aligned_cols=94 Identities=29% Similarity=0.494 Sum_probs=84.8
Q ss_pred ccceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------c
Q 000713 1233 VVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------D 1305 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~ 1305 (1335)
..|.++++|++++|... ..++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.. +
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 46789999999999642 2369999999999999999999999999999999999999999999999998854 3
Q ss_pred CCCceeecccccccccHHhhH
Q 000713 1306 EPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1306 ~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+.+++++|++.+|.+||+||.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl 108 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNI 108 (226)
T ss_pred hhEEEEecccHHHhhhHHHHh
Confidence 568999999999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=169.59 Aligned_cols=89 Identities=33% Similarity=0.500 Sum_probs=81.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.. +..++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 359999999999999999999999999999999999999999999999999864 34689
Q ss_pred eeecccccccccHHhhH
Q 000713 1310 LMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep~LFsGTIrE~~ 1326 (1335)
+++|++.+|.+||+||.
T Consensus 81 ~~~q~~~~~~~tv~e~l 97 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNI 97 (241)
T ss_pred EEecCchhchhhHHHHH
Confidence 99999999999999983
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=168.72 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=80.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhcc-----CCCCCeEEECCeecCC-------
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI-----EPARGKILVDGKLAEY------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~-----e~~~G~I~IDGvdI~~------- 1304 (1335)
|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ .|++|+|.+||.++..
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 25999999999999999999999999999999999999 9999999999999854
Q ss_pred -cCCCceeecccccccccHHhhH
Q 000713 1305 -DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 -~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
++.+++++|++.+|..||+||.
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l 101 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNV 101 (227)
T ss_pred HHhhEEEEecCchhccccHHHHH
Confidence 2468999999999999999983
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=168.97 Aligned_cols=88 Identities=30% Similarity=0.509 Sum_probs=79.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 359999999999999999999999999999999999999999999999998754 345
Q ss_pred Cceeecccccccc-cHHhhH
Q 000713 1308 MELMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1308 i~lV~Qep~LFsG-TIrE~~ 1326 (1335)
+++++|++.+|.+ ||+||.
T Consensus 79 i~~v~q~~~~~~~~tv~~~l 98 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENV 98 (235)
T ss_pred eEEEccCcccCCCCcHHHHH
Confidence 8999999999986 999973
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=172.30 Aligned_cols=90 Identities=28% Similarity=0.453 Sum_probs=81.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
-|+++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 359999999999999999999999999999999999999999999999999864 35689
Q ss_pred eeeccc--ccccccHHhhH
Q 000713 1310 LMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep--~LFsGTIrE~~ 1326 (1335)
+++|+| .+|..||+||.
T Consensus 83 ~v~q~~~~~~~~~tv~e~l 101 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDV 101 (274)
T ss_pred EEecChhhhhccCcHHHHH
Confidence 999998 68999999984
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=166.50 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=80.9
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-cCCCceeec
Q 000713 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-DEPMELMKR 1313 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-~~~i~lV~Q 1313 (1335)
|+++|++++|.... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...+++++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 57899999996421 469999999999999999999999999999999999999999999999999864 356899999
Q ss_pred cccccc-ccHHhhH
Q 000713 1314 EGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1314 ep~LFs-GTIrE~~ 1326 (1335)
++.+|. .|++||.
T Consensus 81 ~~~~~~~~tv~e~l 94 (220)
T cd03293 81 QDALLPWLTVLDNV 94 (220)
T ss_pred ccccccCCCHHHHH
Confidence 999997 7999973
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=162.37 Aligned_cols=89 Identities=27% Similarity=0.514 Sum_probs=82.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------c
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------D 1305 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~ 1305 (1335)
-.|++++|+++|.. ..||+||||+|++||..||+|++|||||||+.++.++..|++|+|.|||.||.. +
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999953 469999999999999999999999999999999999999999999999999975 4
Q ss_pred CCCceeecccccc-cccHHhh
Q 000713 1306 EPMELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1306 ~~i~lV~Qep~LF-sGTIrE~ 1325 (1335)
++++++.|...|| +-||.||
T Consensus 85 ~r~GvlFQ~gALFssltV~eN 105 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFEN 105 (263)
T ss_pred hheeEEeeccccccccchhHh
Confidence 6799999999999 5799998
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=168.40 Aligned_cols=90 Identities=26% Similarity=0.412 Sum_probs=80.9
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------c
Q 000713 1237 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------D 1305 (1335)
Q Consensus 1237 I~f~nv~~rY~~~--~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~ 1305 (1335)
|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.. +
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 1269999999999999999999999999999999999999999999999999864 3
Q ss_pred CCCceeeccccccc-ccHHhhH
Q 000713 1306 EPMELMKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1306 ~~i~lV~Qep~LFs-GTIrE~~ 1326 (1335)
+.+++++|++.+|. .|++||.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l 103 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENV 103 (233)
T ss_pred hheEEEccCcccCCCCcHHHHH
Confidence 56899999999996 6999983
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=167.94 Aligned_cols=90 Identities=31% Similarity=0.547 Sum_probs=82.5
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
|.|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.++..|++|+|.+||.++.. ++.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 359999999999999999999999999999999999999999999999999864 3568
Q ss_pred ceeecccccccccHHhh
Q 000713 1309 ELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LFsGTIrE~ 1325 (1335)
++++|++.+|.+|++||
T Consensus 80 ~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 80 GVVLQDTFLFSGTIMEN 96 (229)
T ss_pred EEecCCchhhhhHHHHH
Confidence 99999999999999987
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-16 Score=168.60 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=103.5
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC-CCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHH
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGE-VPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETL 726 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~-~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~ 726 (1335)
..++++.+|++++|+|||||||||||++|.+. +....|. |+|....- ....+++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~--------~~~~~~~~--i~~~dqi~-------------- 76 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC--------FVPAESAS--IPLVDRIF-------------- 76 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC--------Cccccccc--cCCcCEEE--------------
Confidence 34566678999999999999999999999943 2222221 22221000 00001111
Q ss_pred HHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEE
Q 000713 727 ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVV 805 (1335)
Q Consensus 727 ~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~Tv 805 (1335)
..++..+ .+.+....+++++|| ++.+.+...+|+++|+|||++++|+..+..+...+++. ..++.++
T Consensus 77 ---------~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~v 144 (202)
T cd03243 77 ---------TRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRT 144 (202)
T ss_pred ---------EEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 1111111 122344567777775 66667888999999999999999999888876655543 3458899
Q ss_pred EEEccCCCccccCCeEEEEeCCeEEEecCh
Q 000713 806 LLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 806 IlvTH~~~~l~~~D~iivl~~G~i~~~g~~ 835 (1335)
|++||+.+....+|++..+++|++...+..
T Consensus 145 i~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 145 LFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 999999999888999999999999877654
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=170.08 Aligned_cols=92 Identities=23% Similarity=0.343 Sum_probs=82.6
Q ss_pred ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccC-----CCCCeEEECCeecCC---
Q 000713 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE-----PARGKILVDGKLAEY--- 1304 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e-----~~~G~I~IDGvdI~~--- 1304 (1335)
..|.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++..
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3578999999999963 359999999999999999999999999999999999987 589999999999842
Q ss_pred -----cCCCceeecccccccccHHhhH
Q 000713 1305 -----DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 -----~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
++.+++++|++.+|..||+||.
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl 114 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNI 114 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHH
Confidence 3568999999999999999983
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=161.69 Aligned_cols=89 Identities=25% Similarity=0.421 Sum_probs=80.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cC
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DE 1306 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~ 1306 (1335)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|++|||||||+.+|-|+++|++|+|.++|.++.. |.
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999997 44569999999999999999999999999999999999999999999999999985 46
Q ss_pred CCceeecccccc-cccHHhh
Q 000713 1307 PMELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1307 ~i~lV~Qep~LF-sGTIrE~ 1325 (1335)
++|.+.|.+.|- .-||-+|
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~N 101 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLEN 101 (258)
T ss_pred hceeEeccCCcccccHHHHH
Confidence 899999999987 4666664
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=165.21 Aligned_cols=88 Identities=22% Similarity=0.369 Sum_probs=79.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
++++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 459999999999999999999999999999999999999999999999999863 246
Q ss_pred Cceeeccccccc-ccHHhh
Q 000713 1308 MELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~LFs-GTIrE~ 1325 (1335)
+++++|+|.+|. .|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~ 99 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYEN 99 (214)
T ss_pred eEEEecChhhccCCcHHHH
Confidence 899999999995 799997
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=171.94 Aligned_cols=91 Identities=26% Similarity=0.412 Sum_probs=82.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
.++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.. +..++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 489999999996544569999999999999999999999999999999999999999999999999864 34689
Q ss_pred eeeccc--ccccccHHhhH
Q 000713 1310 LMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep--~LFsGTIrE~~ 1326 (1335)
+++|+| .+|+.||+||.
T Consensus 85 ~~~q~~~~~~~~~tv~enl 103 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDV 103 (279)
T ss_pred EEEeCHHHhcccccHHHHH
Confidence 999998 57788999984
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=169.14 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=80.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccC---CCCCeEEECCeecCC------cC
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE---PARGKILVDGKLAEY------DE 1306 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e---~~~G~I~IDGvdI~~------~~ 1306 (1335)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.. +.
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999953 469999999999999999999999999999999999985 689999999999864 34
Q ss_pred CCceeecccccccccHHhhH
Q 000713 1307 PMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1307 ~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
.+++++|++.+|..||+||.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni 99 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENI 99 (246)
T ss_pred hEEEEecCCccccccHHHHh
Confidence 68999999999999999983
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-15 Score=170.94 Aligned_cols=91 Identities=23% Similarity=0.435 Sum_probs=81.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
.|+++|++++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 599999999996444569999999999999999999999999999999999999999999999999863 34689
Q ss_pred eeeccc--ccccccHHhhH
Q 000713 1310 LMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep--~LFsGTIrE~~ 1326 (1335)
+++|+| .++..||+||.
T Consensus 87 ~v~q~~~~~~~~~tv~enl 105 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDI 105 (271)
T ss_pred EEEeCHHHhcCcccHHHHH
Confidence 999998 46688999983
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=159.16 Aligned_cols=88 Identities=33% Similarity=0.512 Sum_probs=79.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCcee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPMELM 1311 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV 1311 (1335)
++++|++++|.. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-K-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 478999999963 3 59999999999999999999999999999999999999999999999998853 3568999
Q ss_pred ecccccccc-cHHhhH
Q 000713 1312 KREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1312 ~Qep~LFsG-TIrE~~ 1326 (1335)
+|++.+|.+ |++|+.
T Consensus 79 ~q~~~~~~~~tv~~~~ 94 (173)
T cd03230 79 PEEPSLYENLTVRENL 94 (173)
T ss_pred ecCCccccCCcHHHHh
Confidence 999999986 999984
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=164.84 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCCCCccccCCCC----CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCE
Q 000713 738 LPYGDNTEIGERGV----NLSGGQKQRIQLARALY---------QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804 (1335)
Q Consensus 738 l~~gd~t~ig~~g~----~LSGGQkqRv~LARAl~---------~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~T 804 (1335)
-|+.|+..+.-.+. .+|+||||++++||+++ .+|+++|+|||+++||++.++.+.+.+.+. + .
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q 240 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-Q 240 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-C
Confidence 35555544332332 48999999999999984 799999999999999999999888755431 2 4
Q ss_pred EEEEccCCCcccc-C---CeEEEEeCCeE
Q 000713 805 VLLVTHQVDFLPA-F---DSVLLMSDGEI 829 (1335)
Q Consensus 805 vIlvTH~~~~l~~-~---D~iivl~~G~i 829 (1335)
+++++|+.+.+.. + ++++.+++|+|
T Consensus 241 ~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 241 TFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5666666555443 4 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-15 Score=167.25 Aligned_cols=89 Identities=25% Similarity=0.388 Sum_probs=80.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC----cCCCcee
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----DEPMELM 1311 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~----~~~i~lV 1311 (1335)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.. ++.++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 3789999999953 459999999999999999999999999999999999999999999999999864 3468999
Q ss_pred eccccccc-ccHHhhH
Q 000713 1312 KREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1312 ~Qep~LFs-GTIrE~~ 1326 (1335)
+|+|.+|. .||+|+.
T Consensus 80 ~q~~~~~~~~tv~e~l 95 (239)
T cd03296 80 FQHYALFRHMTVFDNV 95 (239)
T ss_pred ecCCcccCCCCHHHHH
Confidence 99999995 6999973
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=167.97 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=79.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-------cCCCc
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------DEPME 1309 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------~~~i~ 1309 (1335)
++++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999864 24589
Q ss_pred eeecccccccc-cHHhh
Q 000713 1310 LMKREGSLFGQ-LVKEY 1325 (1335)
Q Consensus 1310 lV~Qep~LFsG-TIrE~ 1325 (1335)
+++|++.+|.+ ||+|+
T Consensus 79 ~v~q~~~l~~~~tv~~~ 95 (236)
T cd03219 79 RTFQIPRLFPELTVLEN 95 (236)
T ss_pred EEecccccccCCCHHHH
Confidence 99999999986 99997
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-15 Score=164.60 Aligned_cols=88 Identities=28% Similarity=0.474 Sum_probs=78.7
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---cCCCceeecc
Q 000713 1238 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---DEPMELMKRE 1314 (1335)
Q Consensus 1238 ~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---~~~i~lV~Qe 1314 (1335)
+++|++++|..+ .++|+|+||+|++||++||+|++|||||||+++|.+++.|++|+|.+||.++.. ++.+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 468999999642 459999999999999999999999999999999999999999999999999853 3568999999
Q ss_pred c--ccccccHHhhH
Q 000713 1315 G--SLFGQLVKEYW 1326 (1335)
Q Consensus 1315 p--~LFsGTIrE~~ 1326 (1335)
| .+|..|++||.
T Consensus 80 ~~~~~~~~tv~e~l 93 (205)
T cd03226 80 VDYQLFTDSVREEL 93 (205)
T ss_pred hhhhhhhccHHHHH
Confidence 8 47899999984
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-15 Score=158.57 Aligned_cols=89 Identities=33% Similarity=0.546 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
++++|++++|....+.+|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.+||.++.. ++.+++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996543469999999999999999999999999999999999999999999999999864 346899
Q ss_pred eecccccccccHHhh
Q 000713 1311 MKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1311 V~Qep~LFsGTIrE~ 1325 (1335)
++|++.+|.+|+.||
T Consensus 81 ~~~~~~~~~~t~~e~ 95 (171)
T cd03228 81 VPQDPFLFSGTIREN 95 (171)
T ss_pred EcCCchhccchHHHH
Confidence 999999999999987
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-15 Score=164.05 Aligned_cols=87 Identities=32% Similarity=0.448 Sum_probs=79.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------cCCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY--------DEPM 1308 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~--------~~~i 1308 (1335)
|+++||+++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999842 3568
Q ss_pred ceeeccccccc-ccHHhh
Q 000713 1309 ELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LFs-GTIrE~ 1325 (1335)
++++|++.+|. .|++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~ 96 (213)
T cd03262 79 GMVFQQFNLFPHLTVLEN 96 (213)
T ss_pred eEEecccccCCCCcHHHH
Confidence 99999999996 799997
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-15 Score=159.13 Aligned_cols=87 Identities=30% Similarity=0.461 Sum_probs=78.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCc--------CCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD--------EPM 1308 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~--------~~i 1308 (1335)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.+||.+++.. ..+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 579999999953 3599999999999999999999999999999999999999999999999988642 468
Q ss_pred ceeeccccccc-ccHHhh
Q 000713 1309 ELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LFs-GTIrE~ 1325 (1335)
++++|+|.+|. .|++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~ 96 (178)
T cd03229 79 GMVFQDFALFPHLTVLEN 96 (178)
T ss_pred EEEecCCccCCCCCHHHh
Confidence 99999999985 599997
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-15 Score=170.54 Aligned_cols=91 Identities=24% Similarity=0.463 Sum_probs=81.3
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1236 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 3459999999999999999999999999999999999999999999999999864 3568
Q ss_pred ceeeccc--ccccccHHhhH
Q 000713 1309 ELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1309 ~lV~Qep--~LFsGTIrE~~ 1326 (1335)
++++|+| .++..||+||.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni 103 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDV 103 (279)
T ss_pred eEEEcChHHhcccccHHHHH
Confidence 9999998 46788999974
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-15 Score=168.44 Aligned_cols=89 Identities=25% Similarity=0.349 Sum_probs=80.3
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccC-----CCCCeEEECCeecCC------
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE-----PARGKILVDGKLAEY------ 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e-----~~~G~I~IDGvdI~~------ 1304 (1335)
.|+++||+++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999953 359999999999999999999999999999999999975 589999999999853
Q ss_pred --cCCCceeecccccccccHHhhH
Q 000713 1305 --DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 --~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+..+++++|++.+|.+||+||.
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl 107 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENV 107 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHH
Confidence 3568999999999999999973
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=171.50 Aligned_cols=91 Identities=22% Similarity=0.399 Sum_probs=81.3
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------
Q 000713 1236 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------- 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------- 1304 (1335)
.|+++|++++|.... .++|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 469999999999999999999999999999999999999999999999999852
Q ss_pred --cCCCceeeccc--ccccccHHhhH
Q 000713 1305 --DEPMELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1305 --~~~i~lV~Qep--~LFsGTIrE~~ 1326 (1335)
++.+++++|+| .+|..||+||.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni 107 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDI 107 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHH
Confidence 24689999998 68999999973
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-15 Score=167.41 Aligned_cols=89 Identities=26% Similarity=0.418 Sum_probs=80.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
++++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|.+||.++.. +..+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999864 346899
Q ss_pred eeccccccc-ccHHhhH
Q 000713 1311 MKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1311 V~Qep~LFs-GTIrE~~ 1326 (1335)
++|+|.+|. .||+||.
T Consensus 80 ~~q~~~~~~~~tv~e~l 96 (242)
T cd03295 80 VIQQIGLFPHMTVEENI 96 (242)
T ss_pred EccCccccCCCcHHHHH
Confidence 999999995 7999983
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-15 Score=164.99 Aligned_cols=88 Identities=19% Similarity=0.338 Sum_probs=79.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|.++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 459999999999999999999999999999999999999999999999999864 346
Q ss_pred Cceeeccccc-ccccHHhh
Q 000713 1308 MELMKREGSL-FGQLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~L-FsGTIrE~ 1325 (1335)
+++++|+|.+ +..|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~ 99 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDN 99 (222)
T ss_pred eEEEecCccccccccHHHH
Confidence 8999999987 57899997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1335 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-54 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-40 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-40 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-39 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-39 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-39 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-39 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-38 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-37 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-37 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 6e-37 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 8e-37 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-36 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-35 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-04 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 7e-35 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-23 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-23 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-23 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-23 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-22 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-10 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-22 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-10 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-20 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-20 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-20 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-16 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-19 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-19 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-18 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-16 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-16 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-16 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-16 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-15 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-15 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-10 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-15 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-10 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-14 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-13 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-12 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-11 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-11 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-10 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-10 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 8e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-09 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 4e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-07 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 9e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 6e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 8e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1335 | |||
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-127 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-12 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-125 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-124 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 6e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-66 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-39 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-23 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-49 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 7e-34 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-49 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-32 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-47 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-32 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-40 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-26 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 8e-37 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 8e-19 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 4e-34 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-31 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-34 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 8e-34 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-10 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-33 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-10 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-33 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-33 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 9e-33 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-28 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-32 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-15 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-32 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-26 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-26 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-20 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-07 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 7e-26 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-05 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-26 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-24 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-07 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 5e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 9e-22 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 9e-10 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-21 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-10 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-18 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-18 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-16 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-15 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-13 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-12 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-12 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-10 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 9e-10 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 6e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-07 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-07 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-07 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-07 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-05 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-04 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 6e-04 |
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 394 bits (1013), Expect = e-127
Identities = 84/297 (28%), Positives = 152/297 (51%), Gaps = 8/297 (2%)
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLE 652
V + F E + ++ N N + S SFS P +++I+ +
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNN-NNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENIL 712
+ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI G+I+ENI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 713 FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772
G D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI LARA+Y+DAD
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832
+YLLD PF +D T +F V + ++ K +LVT +++ L D +L++ +G
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 833 APYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFEVS 889
+ +L +F + + + +++ + + + + +E VS
Sbjct: 240 GTFSELQNLRPDFSSKLMGCDSF------DQFSAERRNSILTETLHRFSLEGDAPVS 290
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 1203 ISVERLNQYM--HVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
+ +E + + + ++N + + + P VLK I+
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
E G + + G TG+GKT+L + +EP+ GKI G+++
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 102
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-125
Identities = 105/228 (46%), Positives = 150/228 (65%), Gaps = 3/228 (1%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I++++A+F+W S PT+ I+ + G VA+ G+VG GKS+LL+A+L E+ +G
Sbjct: 3 SITVRNATFTWARSD-PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 687 IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
+ + G AYV Q AWIQ S+RENILFG ++ Y+ ++ C+L+ DLE+LP GD TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV--MEALSGKV 804
GE+GVNLSGGQKQR+ LARA+Y +ADIYL DDP SAVDAH +F + + L K
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 805 VLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852
+LVTH + +LP D +++MS G+I Y +LLA F E + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 1234 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARG 1293
+ + + + + P L GI+ + G + +VG+ G GK++L AL ++ G
Sbjct: 1 MNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1294 KILVDGKLA 1302
+ + G +A
Sbjct: 61 HVAIKGSVA 69
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 382 bits (984), Expect = e-124
Identities = 76/225 (33%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+ +++ + WEE P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G
Sbjct: 6 EVVMENVTAFWEEGG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 687 IQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
I+ G+ ++ SQ +WI G+I+ENI+FG D ++Y+ ++ C L +D+ DN +
Sbjct: 65 IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
GE G+ LSGGQ+ RI LARA+Y+DAD+YLLD PF +D T +F V + ++ K +
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Query: 807 LVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSA 851
LVT +++ L D +L++ +G + +L +F +
Sbjct: 185 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
+V + ++ + VLK I+ E G + + G TG+GKT+L + +EP+ GK
Sbjct: 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 1295 ILVDGKLA 1302
I G+++
Sbjct: 65 IKHSGRIS 72
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-66
Identities = 186/986 (18%), Positives = 346/986 (35%), Gaps = 142/986 (14%)
Query: 405 HSGGEIMNYVTVDAYRI----GE-FPFWFHQIWTTSVQLCIALIILFHA---VGLATIAA 456
H GE+ +T D +I G+ +F + II F + L +A
Sbjct: 162 HDVGELNTRLTDDVSKINEGIGDKIGMFFQAM----ATFFGGFIIGFTRGWKLTLVILAI 217
Query: 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETH----FK 512
V+ ++ AK+ F K + A + E ++ + + + +
Sbjct: 218 SPVLGLSAGI---WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274
Query: 513 NAIEILRNVEYK--WLSAVQLRKAY------NGFLFWSSPVLVSTATFGACYFLNVPLYA 564
N +E + + K + + + A+ FW +G ++
Sbjct: 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFW----------YGTSLVISKEYSI 324
Query: 565 SNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA-PELQSMNIRQKGNIEN 623
V T ++ + + I F A A + ++ P + S + +N
Sbjct: 325 GQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH-KPDN 383
Query: 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683
+ + K+ FS+ ++ ++L+V+ GQ VA+ G G GKST + +
Sbjct: 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 684 QGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCS 730
G + + G VSQ + +I ENI +G E +
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVK 501
Query: 731 L------IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
I L P+ +T +GERG LSGGQKQRI +ARAL ++ I LLD+ SA+D
Sbjct: 502 EANAYDFIMKL---PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 785 AHTASSLFNDYVMEAL----SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + V AL G+ +++ H++ + D + G I+ + +L+
Sbjct: 559 TESEAV-----VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613
Query: 841 SSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFE--------VSKGD 892
+ +LV E E S+ K D
Sbjct: 614 EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD 673
Query: 893 QLIKQEERETGDIGLKPY----IQYLNQNK------GFLFFSIASLSHLTF--VIGQILQ 940
Q K +E D + P I LN + G I F + +++
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVG 733
Query: 941 NSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLF 1000
E ++ +++L++G +S + + + G +K L + S+
Sbjct: 734 VFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSML 793
Query: 1001 RAPMSFYD----STPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTW 1056
R +S++D +T G + +R+++D + V L N + + + + W
Sbjct: 794 RQDVSWFDDPKNTT--GALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 1057 Q---VLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVAN---HLAESIAGAMTIRA 1110
Q +L +P+I +A ++ L K + E+I T+ +
Sbjct: 852 QLTLLLLAIVPIIAIAGVVEMKM------LSGQALKDKKELEGSGKIATEAIENFRTVVS 905
Query: 1111 FEEEDRF---FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCM----V 1162
E +F +A++L + NA + + + ++ + A
Sbjct: 906 LTREQKFETMYAQSLQIPYRNA--MKKAHVFGITF-----SFTQAMMYFSYAAAFRFGAY 958
Query: 1163 LLPPGTFTPG-----FIGMALS-YGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPS 1216
L+ T F + + SS A++II + + S
Sbjct: 959 LVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS 1018
Query: 1217 EAPEVVEDNRPPPNWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTG 1274
+ G V + Y RP P VL+G+S + G + +VG +G
Sbjct: 1019 TQGLKPNM--------LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSG 1069
Query: 1275 SGKTTLRGALFRLIEPARGKILVDGK 1300
GK+T+ L R +P G + +DGK
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGK 1095
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-39
Identities = 130/632 (20%), Positives = 236/632 (37%), Gaps = 93/632 (14%)
Query: 287 NKQKQAEPSSQPSILRTILIC--HWRDIFMSGFFALIKVLTLSAGPLFLNAFILV---AE 341
K+ E S R + + W + F A+I A + + + V
Sbjct: 680 TKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG 739
Query: 342 SKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNA- 400
+ L ++ + I+ ++ + F G + L +++ LR +
Sbjct: 740 PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW 799
Query: 401 -ARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVV 459
++ G + + DA ++ T +L + + +G I +L+
Sbjct: 800 FDDPKNTTGALTTRLANDAAQVKGA---------TGSRLAVIFQNIA-NLGTGIIISLIY 849
Query: 460 ---ITITVLCNTPLAKLQHKFQTKLMVAQDERLKAC--------SEAFVNMKVLKLYAWE 508
+T+ +L P+ + + K++ Q + K +EA N + + E
Sbjct: 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE 909
Query: 509 THFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVF 568
F+ Y + R A V TF + +Y S
Sbjct: 910 QKFET--------MYAQSLQIPYRNAM-------KKAHVFGITFSFTQAM---MYFSYAA 951
Query: 569 TFVATLRLVQDPIRIIPDVIGVFI--------------------QANVAFSRIVNFLE-A 607
F LV + +V+ VF +A V+ S I+ +E
Sbjct: 952 AFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT 1011
Query: 608 PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGS 667
PE+ S + + + + F++ S P ++ +SLEV+ GQ +A+ G G
Sbjct: 1012 PEIDSYSTQGL-KPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGC 1070
Query: 668 GKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTGSIRENILFG 714
GKST++ + G++ + GK VSQ + SI ENI +G
Sbjct: 1071 GKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130
Query: 715 SPMDSHQYQETLERCSL--IKD-LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771
Y+E + I ++ LP NT +G++G LSGGQKQRI +ARAL +
Sbjct: 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190
Query: 772 DIYLLDDPFSAVDAHTASSLFNDYVMEAL----SGKVVLLVTHQVDFLPAFDSVLLMSDG 827
I LLD+ SA+D + V EAL G+ +++ H++ + D ++++ +G
Sbjct: 1191 HILLLDEATSALDTESEKV-----VQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNG 1245
Query: 828 EILRAAPYHQLLASSKEFQELVSAHKETAGSE 859
++ + QLLA + +VS S
Sbjct: 1246 KVKEHGTHQQLLAQKGIYFSMVSVQAGAKRSY 1277
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-23
Identities = 54/365 (14%), Positives = 126/365 (34%), Gaps = 34/365 (9%)
Query: 952 NVSTLRLIVVYLLIG-FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST 1010
++T + G + +S + R + + +++ + ++D
Sbjct: 106 EMTTYAYYYTGIGAGVLIVAYIQVS---FWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH 162
Query: 1011 PLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIF 1067
+G + +R++ D+S ++ I + A + W+ V+ PV+
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 1068 LAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK-NLDLID 1126
L+ + + + + E +A T+ AF + + + N +L +
Sbjct: 223 LSAGIWAKILSSFTDKEL---HAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEE 279
Query: 1127 TNASPFFHSFAANEWLIQRLETLSATVISSAAFCM---------VLLPPGTFTPGFIGMA 1177
+ AN +S + L+ ++ G +
Sbjct: 280 AKRLGIKKAITAN---------ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTV 330
Query: 1178 LSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKV 1237
L S+ + N AN + + + + + P N + G +
Sbjct: 331 FFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNL 388
Query: 1238 DICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
+ ++ Y R + +LKG++ + G + +VG +G GK+T + RL +P G +
Sbjct: 389 EFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 1296 LVDGK 1300
+DG+
Sbjct: 448 SIDGQ 452
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-49
Identities = 88/508 (17%), Positives = 192/508 (37%), Gaps = 43/508 (8%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFI---LVAESKAGFKYEGYLLAITLFLAKILE 364
+ ++G ++ + + L + ++ + + + IL
Sbjct: 23 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL----LWMPLVVIGLMILR 78
Query: 365 SLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGE- 423
++ + + KV + ++ + + A S G +++ +T D+ ++
Sbjct: 79 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 138
Query: 424 FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMV 483
+ + I++F+ +I +V+ I + ++K +
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 198
Query: 484 AQDERLKACSEAFVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRKAYNGFL 539
+ + + K + ++ + F +R K +SA + +
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 258
Query: 540 FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFS 599
+ V + + L A + +++ + P++ + +V F + A
Sbjct: 259 ASLALAFV--LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 316
Query: 600 RIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKV 659
+ L++ + + R I+ + ++ +F++ P +RNI+L++ G+ V
Sbjct: 317 TLFAILDSEQEKDEGKRV---IDRATGDLEFRNVTFTYP-GREVPALRNINLKIPAGKTV 372
Query: 660 AICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGS 706
A+ G GSGKST+ + I +G I + G + A VSQ + +
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 707 IRENILFGSPMDSHQYQETLERC-------SLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759
+ NI + +E +E I + G +T IGE GV LSGGQ+Q
Sbjct: 433 VANNIAYART--EEYSREQIEEAARMAYAMDFINK---MDNGLDTIIGENGVLLSGGQRQ 487
Query: 760 RIQLARALYQDADIYLLDDPFSAVDAHT 787
RI +ARAL +D+ I +LD+ SA+D +
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTES 515
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-34
Identities = 76/415 (18%), Positives = 156/415 (37%), Gaps = 52/415 (12%)
Query: 907 LKPYIQYLNQNKGFLFFSIASLSHLTF--VIGQILQNSWLAANVENPNVSTLRLIVVYLL 964
+ P+ L + + + S ++ +L + + + L +I + +L
Sbjct: 20 IAPFKAGLI--VAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMIL 77
Query: 965 IG---FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSS 1021
G ++S+ + +S VV+ +R + LF ++ P++F+D G +LSR++
Sbjct: 78 RGITSYISS-YCISWVSGKVVMTMR--RRLFGHMM----GMPVAFFDKQSTGTLLSRITY 130
Query: 1022 DLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAI-----RLQ 1073
D V +LI V + ++ +WQ +L V P++ +AI R +
Sbjct: 131 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFR 190
Query: 1074 RYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNLDLIDTNA 1129
+ ++ + + G + F E RF + +
Sbjct: 191 SISKNMQNTMGQVTT--------SAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM 242
Query: 1130 SPFFHSFAANEWLIQRLETLSATVISSAAFCMVL---LPPGTFTPGFIGMALSYGLSLN- 1185
S + ++ +IQ + +L+ + AA + L GT T ++ L
Sbjct: 243 KMVSAS-SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTIT-VVFSSMIALMRPLKS 300
Query: 1186 -SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQI 1244
+++ Q +A + + L + E E R G ++ ++
Sbjct: 301 LTNVNAQFQR--GMA----ACQTLFAILDSE---QEKDEGKRVID--RATGDLEFRNVTF 349
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
Y L+ I+ G + +VGR+GSGK+T+ + R + G IL+DG
Sbjct: 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-49
Identities = 91/509 (17%), Positives = 184/509 (36%), Gaps = 45/509 (8%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFI---LVAESKAGFKYEGYLLAITLFLAKILE 364
+ + +S +I + L + +L + +
Sbjct: 23 YKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFL----RILPFMILGLMFVR 78
Query: 365 SLSQ-RQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGE 423
LS Y S + V + ++ + + S G +++ +T D+ ++
Sbjct: 79 GLSGFASSYCLSW-VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAG 137
Query: 424 -FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLM 482
I + L ++F ++ +VV + + ++K K +
Sbjct: 138 ATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQ 197
Query: 483 VAQDERLKACSEAFVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRKAYNGF 538
A + + KV+ Y + F +R K +SA +
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQM 257
Query: 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAF 598
+ + V + + L + + + P++ + V F + A
Sbjct: 258 IASLALFAV--LFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315
Query: 599 SRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQK 658
+ ++ + + E VN + +K +F+++ KP + ++S + G+
Sbjct: 316 QTLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQGKE-KPALSHVSFSIPQGKT 371
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTG 705
VA+ G GSGKST+ G+I + G A VSQ +
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND 431
Query: 706 SIRENILFGSPMDSHQYQETLERC-------SLIKDLELLPYGDNTEIGERGVNLSGGQK 758
+I NI + + + + E +E+ I+++ P G +T IGE G +LSGGQ+
Sbjct: 432 TIANNIAYAAEGEYTR--EQIEQAARQAHAMEFIENM---PQGLDTVIGENGTSLSGGQR 486
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHT 787
QR+ +ARAL +DA + +LD+ SA+D +
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTES 515
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-32
Identities = 79/415 (19%), Positives = 151/415 (36%), Gaps = 52/415 (12%)
Query: 907 LKPYIQYLNQNKGFLFFSIASLSHLTF--VIGQILQNSWLAANVENPNVSTLRLIVVYLL 964
++ Y L + I + + ++ +L + A + ++ + +
Sbjct: 20 IRLYKAGLV--VSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFV 77
Query: 965 ---IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSS 1021
GF S+ + +S +VV+ +R + LF+ + P+ F+D G +LSR++
Sbjct: 78 RGLSGFASS-YCLSWVSGNVVMQMR--RRLFNHFM----HMPVRFFDQESTGGLLSRITY 130
Query: 1022 DLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAI-----RLQ 1073
D V +L+ V + L ++ +WQ VL V PV+ AI R +
Sbjct: 131 DSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFR 190
Query: 1074 RYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNLDLIDTNA 1129
+ + + + + G + ++ E RF + +
Sbjct: 191 KISRNMQTAMGHVTS--------SAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 1130 SPFFHSFAANEWLIQRLETLSATVISSAAFCMVL---LPPGTFTPGFIGMALSYGLSLN- 1185
+ + +IQ + +L+ + A + L PGTFT L
Sbjct: 243 KLVSAQ-SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFT-VVFSAMFGLMRPLKA 300
Query: 1186 -SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQI 1244
+S+ Q +A + + L M E V G+VD+ D+
Sbjct: 301 LTSVTSEFQR--GMA----ACQTLFGLMD---LETERDNGKYEAE--RVNGEVDVKDVTF 349
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
Y+ L +S + G + +VGR+GSGK+T+ R + G I +DG
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 2e-47
Identities = 116/519 (22%), Positives = 198/519 (38%), Gaps = 57/519 (10%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFL----NAFILVAESKAGFKYEGYL--LAITLFLAK 361
+ IF + +IK PL + + I K + I LF+
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 362 ILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRI 421
I+ + R + ++ K+ + +Y LS + G++++ V D +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 422 GEFPFWFH----QIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKF 477
+F IW + + IAL I+F T+AAL + +L K
Sbjct: 132 KDF---ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKL 188
Query: 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRK 533
+ A E E + V+K +A E + F + L +
Sbjct: 189 TRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT---RALKHTRWNA 245
Query: 534 AYNGFL-FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFI 592
+ + + GA ++ + + FV L L+ P+R +
Sbjct: 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLT 305
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGN---IENVNRAISIKSASFSWEESSSKPTMRNI 649
Q+ + R+ ++ +I+ IE I I SF + ++ P +++I
Sbjct: 306 QSFASMDRVFQLIDEDY----DIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-APILKDI 360
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGK-------------TA 694
+L + G+ VA G G GKSTL+ I +V T G I + G
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRNQIG 418
Query: 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLERC------SLIKDLELLPYGDNTEIGE 748
V Q + + +++ENIL G P + +E +E I + LP G +TE+GE
Sbjct: 419 LVQQDNILFSDTVKENILLGRPTATD--EEVVEAAKMANAHDFIMN---LPQGYDTEVGE 473
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
RGV LSGGQKQR+ +AR + I +LD+ SA+D +
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-32
Identities = 73/416 (17%), Positives = 149/416 (35%), Gaps = 36/416 (8%)
Query: 907 LKPYIQYLNQNKGFLFFS-----IASLSHLTF--VIGQILQNSWLAANVENPNVST---L 956
+K Y+Q++ K +F + I + +I + + +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRIL 1016
+ + + V R + + + +L N L FY + +G+++
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 1017 SRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAI--- 1070
SRV +D+ I L+ L ++ + + P L +
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 1071 --RLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNLDL 1124
RL++ ++ L + G L E + G +++F E F KN +
Sbjct: 182 FGRLRKLTRERSQALAEVQG--------FLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233
Query: 1125 IDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSL 1184
+ + A + I + + ++ + + G+ T G + + Y L
Sbjct: 234 LTRALKHTRWN-AYSFAAINTVTDIGPIIVIGVGAYLAIS--GSITVGTLAAFVGYLELL 290
Query: 1185 NSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQI 1244
L + + TL S++R+ Q + E ++ P G++DI +
Sbjct: 291 FGPLRRLVASFTTLTQSFASMDRVFQLI---DEDYDIKNGVGAQPIEIKQGRIDIDHVSF 347
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+Y + +LK I+ + E G + VG +G GK+TL + R + G+IL+DG
Sbjct: 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 8e-37
Identities = 71/293 (24%), Positives = 134/293 (45%), Gaps = 49/293 (16%)
Query: 587 VIGVFIQANVAFSRIVNFLEA------PELQSMNIRQKGNIE--NVNRAISIKSASFSWE 638
++ ++A+ + R++ L + +G++ NV F +
Sbjct: 302 ILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENV---------EFRYF 352
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI--LGEVPHTQGTIQVYG----- 691
E++ P + ++ V+PG VA+ GE GSGKSTL+ I L + +G ++V
Sbjct: 353 ENT-DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRT 409
Query: 692 --------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSL--IKD-LELLPY 740
+ V Q + +G+I+EN+ +G + E +E + I D + LP
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDD--EIVEAAKIAQIHDFIISLPE 467
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
G ++ + G N SGGQKQR+ +ARAL + + +LDD S+VD T + ++ L
Sbjct: 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-----LDGL 522
Query: 801 ----SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
G ++T ++ D +L++ +G++ + +LL K ++E+
Sbjct: 523 KRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIY 575
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 8e-19
Identities = 91/449 (20%), Positives = 172/449 (38%), Gaps = 80/449 (17%)
Query: 899 ERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAA----NVENPNVS 954
G G K +YL F + + + VI + Q + LA + + S
Sbjct: 3 SGSGGGGGSKTLARYLKPYWIFAVLAPLFM--VVEVICDLSQPTLLARIVDEGIARGDFS 60
Query: 955 T-LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSF----YDS 1009
L+ ++ L++ + + + V +S++ + L LFR +SF +
Sbjct: 61 LVLKTGILMLIVALIGAVG----GIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR 116
Query: 1010 TPLGRILSRVSSDLSIVDLDI----------PFSLIFAVGATTNACSNLGVLAVVT---- 1055
+++R+++D++ + + P + + V+AV
Sbjct: 117 FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI-----------VMAVSINVKL 165
Query: 1056 WQVLFVSIPVIFLAI-----RLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRA 1110
VL IP I L + + + +N + E++ G +RA
Sbjct: 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRA 217
Query: 1111 F----EEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPP 1166
F E + F N L + S F L + ++ +I+ F VL+
Sbjct: 218 FRREEYENENFRKANESLRRSIIS-AFSLIVFALPLFIFI--VNMGMIAVLWFGGVLVRN 274
Query: 1167 GTFTPGFIGMAL-SYGLSLNSSLVMSIQNQCTLANYII-------SVERLNQYMHVPSEA 1218
G I MA +Y + + SL+M + N + S +R+ + V +E
Sbjct: 275 NQMEIGSI-MAYTNYLMQIMFSLMM-------IGNILNFIVRASASAKRVLE---VLNEK 323
Query: 1219 PEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1278
P + E + V G V +++ RY ++ VL G++ + + G + ++G TGSGK+
Sbjct: 324 PAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKS 383
Query: 1279 TLRGALFRLIEPARGKILVDGK-LAEYDE 1306
TL + RLI+P RG++ VD +
Sbjct: 384 TLMNLIPRLIDPERGRVEVDELDVRTVKL 412
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 4e-34
Identities = 114/524 (21%), Positives = 201/524 (38%), Gaps = 76/524 (14%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLS 367
H + M F + + P + I V F + I + L SL
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 368 QRQRYFRSRL---IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGE- 423
+ + ++ + V L ++ K R+ G+I++ V D I
Sbjct: 94 F---WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNV 150
Query: 424 FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKF----QT 479
Q ++ V L A+I++F + ++ L ++ +TVL ++ K+ Q
Sbjct: 151 LGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQR 210
Query: 480 KL--MVAQDERLKACSEAFVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRK 533
L + E E + V+KL+ E F E LR V K A
Sbjct: 211 VLGQLNGIIE------EDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK---AQ---- 257
Query: 534 AYNGFL-----FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVI 588
++G L ++ + FG L + + TF+ R P+ + +
Sbjct: 258 IFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQF 317
Query: 589 GVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRN 648
+ A + RI L+ E + + + V I K+ FS+++ KP +++
Sbjct: 318 NMIQMALASAERIFEILDLEEEK--DDPDAVELREVRGEIEFKNVWFSYDKK--KPVLKD 373
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGK-------------T 693
I+ ++PGQKVA+ G GSGK+T++ ++ +V +G I V G
Sbjct: 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRSSI 431
Query: 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERC----------SLIKDLELLPYGDN 743
V Q + + +++EN+ +G+P T E IK LP G
Sbjct: 432 GIVLQDTILFSTTVKENLKYGNP------GATDEEIKEAAKLTHSDHFIKH---LPEGYE 482
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787
T + + G +LS GQ+Q + + RA + I +LD+ S VD T
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-31
Identities = 98/421 (23%), Positives = 169/421 (40%), Gaps = 55/421 (13%)
Query: 907 LKPYIQYLNQNKGFLFFSI-----ASLSHL--TFVIGQILQNSWLAANVENPNVSTLRLI 959
L+ + YL + L +S+ + ++IG+ + ++ + L L
Sbjct: 25 LRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILG 84
Query: 960 VVYLLIGFVSTL--FLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILS 1017
+Y L + L +M VV +R K LF +L + P+ F+D TP G I+S
Sbjct: 85 TIYALTSLLFWLQGKIMLTLSQDVVFRLR--KELFEKL-QRV---PVGFFDRTPHGDIIS 138
Query: 1018 RVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAIRL-- 1072
RV +D+ ++ + S+I + ++ V V +P+ L ++
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 1073 ---QRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNLDLI 1125
++Y++ + L +LNG + E I+G I+ F +E ++F N L
Sbjct: 199 SQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 1126 DTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLN 1185
S L+ + L +IS + L T G I + Y
Sbjct: 251 KVGTKAQIFSGVLPP-LMNMVNNLGFALISGFGGWLALK--DIITVGTIATFIGYSRQFT 307
Query: 1186 ------SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDI 1239
S+ IQ LA S ER+ + + + E +D V G+++
Sbjct: 308 RPLNELSNQFNMIQM--ALA----SAERIFEIL----DLEEEKDDPDAVELREVRGEIEF 357
Query: 1240 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
++ Y P+ LK I+ + G K+ +VG TGSGKTT+ L R + RG+ILVDG
Sbjct: 358 KNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416
Query: 1300 K 1300
Sbjct: 417 I 417
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 58/257 (22%), Positives = 123/257 (47%), Gaps = 28/257 (10%)
Query: 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLL 673
+ + + I +FS+ + ++ T+++I+ + G A+ G GSGKST+
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 674 AAILG--EVPHTQGTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMD 718
+ + +G I++ GK V Q + +I+ NIL+G
Sbjct: 64 KLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120
Query: 719 SHQYQETLERCSLIKDL-ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777
+ + + + + D E LP +T +G +G+ LSGG++QRI +AR L +D I + D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 778 DPFSAVDAHTASSLFNDYVMEALS----GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833
+ S++D+ T +A+ + ++++ H++ + + +S++L++ G+I+
Sbjct: 181 EATSSLDSKTEY-----LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235
Query: 834 PYHQLLASSKEFQELVS 850
+ LL + E+ E+ +
Sbjct: 236 THKDLLKLNGEYAEMWN 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 1235 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
++ D+ Y + + LK I+ G +VG TGSGK+T+ L+R +
Sbjct: 16 VNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 1293 GKILVDGK 1300
G I + GK
Sbjct: 74 GDIKIGGK 81
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 8e-34
Identities = 67/243 (27%), Positives = 126/243 (51%), Gaps = 28/243 (11%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+S + F+++ S+ +R+IS E +P +A G G GKST+ + + T G I
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 688 QVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLE--RCSLI 732
+ G+ +VSQ + I G+IREN+ +G D ++ + +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAFA 118
Query: 733 KD-LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791
+ +E +P NTE+GERGV +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-- 176
Query: 792 FNDYVMEAL----SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQE 847
V +AL G+ L++ H++ + D + + G+I + +++L+A+ + +
Sbjct: 177 ---MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233
Query: 848 LVS 850
VS
Sbjct: 234 YVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 6e-10
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
Y DS +L+ IS + I G +G GK+T+ L R +P G+I +DG+
Sbjct: 10 AY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 1e-33
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
N+ + + SF++ + ++ ++ + PG+ A+ G GSGKST+ A +
Sbjct: 11 LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 682 HTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLER 728
T G + + G + A V Q + S RENI +G +E
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM-EEITAV 129
Query: 729 CSL------IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782
I P G +TE+GE G LSGGQ+Q + LARAL + + +LD+ SA
Sbjct: 130 AMESGAHDFISGF---PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 783 VDAHTASSLFNDYVMEAL------SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYH 836
+DA V L + + VLL+T Q+ +L + +G + +
Sbjct: 187 LDAGNQLR-----VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 837 QLLASSKEFQELVSAHKETAGSE 859
QL+ ++ +V A + +
Sbjct: 242 QLMERGGCYRSMVEALAAPSDAA 264
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1232 PVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE 1289
+ G V D+ Y P+ VL+G++ T G +VG GSGK+T+ L L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1290 PARGKILVDGK 1300
P GK+L+DG+
Sbjct: 71 PTGGKVLLDGE 81
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
N+A+S+++ F ++ + + ++ ++ G +A+ G+ G GKSTLL +LG Q
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 685 GTIQVYGKTAYVSQT-AWIQTGSIRENILFG-----------SPMDSHQYQETLERCSLI 732
G I+VY +V Q + S+ + +L G D + L+ + +
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLN-L 118
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
L + LSGGQ+Q I +ARA+ + + LLD+P SA+D +
Sbjct: 119 THLAKREFTS----------LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL 168
Query: 793 NDYVMEALS---GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAP 834
+ ++ L+ V+ THQ + + A + LL++
Sbjct: 169 S--LLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGET 212
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+ + +L Y+ + + + ++ G + ++G+ G GK+TL L + P +GKI
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1297 VDGKLA 1302
V +
Sbjct: 64 VYQSIG 69
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-33
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 38/243 (15%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I + + K ++ IS ++ G K + G G+GK+TLL + P T GT
Sbjct: 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 687 IQVYGKT---------------AYVSQT---AWIQTGSIRENIL---FGS-PMDSHQYQE 724
+ ++GK +VS + + + + + ++ F S + E
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE 137
Query: 725 TLERC-SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783
L+K + + IG LS G+KQR+ +ARAL + +LD+P + +
Sbjct: 138 IRNEAHQLLKLVGMSAKAQ-QYIGY----LSTGEKQRVMIARALMGQPQVLILDEPAAGL 192
Query: 784 DAHTASSLFNDYVMEALS----GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838
D SL + ++++LS ++ VTH ++ + A F +LL+ DG+ ++ +
Sbjct: 193 DFIARESLLS--ILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 839 LAS 841
L S
Sbjct: 251 LTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 1215 PSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTG 1274
S P ++ + + + +LK IS G K + G G
Sbjct: 2 SSHHHHHHSSGLVPRGSHML--IQLDQIGRMK--QGKTILKKISWQIAKGDKWILYGLNG 57
Query: 1275 SGKTTLRGALFRLIEPARGKILVDGK 1300
+GKTTL L G + + GK
Sbjct: 58 AGKTTLLNILNAYEPATSGTVNLFGK 83
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 9e-33
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 1221 VVEDN--RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1278
++E++ + WP G++ + DL +Y +L+ IS + G ++G++GRTGSGK+
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1279 TLRGALFRLIEPARGKILVDG 1299
TL A RL+ G+I +DG
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDG 81
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 68/289 (23%), Positives = 128/289 (44%), Gaps = 28/289 (9%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+++K + + E + NIS + PGQ+V + G GSGKSTLL+A L + +T+G
Sbjct: 19 QMTVKDLTAKYTEGG-NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGE 76
Query: 687 IQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQE---TLERCS 730
IQ+ G + Q +I +G+ R+N+ P +H QE +
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVG 133
Query: 731 LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASS 790
L +E P + + + G LS G KQ + LAR++ A I LLD+P + +D T
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQ 192
Query: 791 LFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA--SSKEFQEL 848
+ + +A + V+L +++ + D L++ + ++ + +L + +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 849 VSAHKETAGSERLAEVTPSQ---KSGMPAKEIKKGHVEKQFEVSKGDQL 894
+ + K ++ Q + MP ++ VE + +V G +
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESR-DVQVGANM 300
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 1294 KILV--DGKLAEYDEPMELMKREGSLFGQLVKE 1324
+ LV + K+ +YD +EL F
Sbjct: 222 QFLVIEENKVRQYDSILELYHYPADRFVAGFIG 254
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 45/251 (17%)
Query: 618 KGNIE--NVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAA 675
+I N+ F ++ S + NI+L ++ G+ + I G GSGKSTL
Sbjct: 5 HHDITFRNI---------RFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 676 ILGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQY 722
I G + + G + V Q + SI +NI +P S
Sbjct: 55 IQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-- 112
Query: 723 QETLERCSL------IKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776
++ + L I + L G NT +GE+G LSGGQ+QRI +ARAL + I +
Sbjct: 113 EKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIF 169
Query: 777 DDPFSAVDAHTASSLFNDYVMEALS----GKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832
D+ SA+D + +M + G+ V+++ H++ + D +++M G+I+
Sbjct: 170 DEATSALDYESEH-----VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224
Query: 833 APYHQLLASSK 843
+ +LL+ +
Sbjct: 225 GKHKELLSEPE 235
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
+ +++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1293 GKILVDGK 1300
G++L+DG
Sbjct: 64 GQVLIDGH 71
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-32
Identities = 71/324 (21%), Positives = 137/324 (42%), Gaps = 54/324 (16%)
Query: 578 QDPIRIIPDVIGVFIQANVAFSRIVNFLE----------APELQSMNIRQKGNI--ENVN 625
++ + + + L+ A L+ QKG I ENV
Sbjct: 5 HHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLR----FQKGRIEFENV- 59
Query: 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHT 683
FS+ + + T++++S V PGQ +A+ G G+GKST+L + ++ +
Sbjct: 60 --------HFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--S 107
Query: 684 QGTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCS 730
G I++ G+ V Q + +I +NI +G + E + +
Sbjct: 108 SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAA 167
Query: 731 LIKDL-ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
I D P G T++GERG+ LSGG+KQR+ +AR + + I LLD+ SA+D
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 790 SLFNDYVMEAL----SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845
+ + +L + + ++V H++ + D +L++ DG I+ + LL+ +
Sbjct: 228 A-----IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282
Query: 846 QELVSAHKETAGSERLAEVTPSQK 869
++ + + + ++
Sbjct: 283 ADMWQLQQGQEETSEDTKPQTMER 306
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 4e-13
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 1202 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTF 1261
I +E + + EV + P G+++ ++ Y L+ +S T
Sbjct: 22 FIDMENMFDLLKEE---TEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFTV 77
Query: 1262 EGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
G + +VG +G+GK+T+ LFR + + G I +DG
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-26
Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 28/259 (10%)
Query: 585 PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNI----ENVNRAISIKSASFSWEES 640
P V G+F + + I FL+ L+ N+R + + R + +
Sbjct: 305 PGVYGIFSKPKGTRNGINEFLQ-GYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRL 363
Query: 641 S---SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVS 697
+ E+R G+ + I G G GK+T + + G T+G ++ AY
Sbjct: 364 VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP 423
Query: 698 QTAWIQ-TGSIRENI--LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
Q + G++ E + + S ++S+ Y+ L+K L ++ D + + LS
Sbjct: 424 QYIKAEYEGTVYELLSKIDSSKLNSNFYKT-----ELLKPLGIIDLYDR-NVED----LS 473
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHT---ASSLFNDYVMEALSGKVVLLVTHQ 811
GG+ QR+ +A L +DADIYLLD+P + +D S + + K L+V H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--EKTALVVEHD 531
Query: 812 VDFLPAF-DSVLLMSDGEI 829
V + D +++ +GE
Sbjct: 532 VLMIDYVSDRLIVF-EGEP 549
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-20
Identities = 51/219 (23%), Positives = 79/219 (36%), Gaps = 50/219 (22%)
Query: 627 AISIKSASFSWEESSSK-----PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
AISI + +E + V+ G V I G G+GK+T + + G++
Sbjct: 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 682 HTQGT---------------------IQVYG-------KTAYVSQTAWIQTGSIRENILF 713
++ K YV G +RE
Sbjct: 143 PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL--- 199
Query: 714 GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773
+ E ++K+LEL D E+ + LSGG+ QR+ +A AL + A
Sbjct: 200 ---LKKVDEVGKFEE--VVKELELENVLDR-ELHQ----LSGGELQRVAIAAALLRKAHF 249
Query: 774 YLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTH 810
Y D+P S +D + V+ L GK VL+V H
Sbjct: 250 YFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVLVVEH 286
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L+ G IGIVG G GKTT L + EP GK+ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-26
Identities = 52/269 (19%), Positives = 105/269 (39%), Gaps = 29/269 (10%)
Query: 585 PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKG-NIENVNRAISIKSASFSWEESSSK 643
V G ++ A I NFL+ L + N++ + I+ + + +S S +
Sbjct: 214 SSVYGRVSKSYAARVGINNFLKG-YLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKW 272
Query: 644 PTMR---------NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT- 693
+ + E + G+ + I G G GK+T ++GE+ +G++ +
Sbjct: 273 TKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL 332
Query: 694 AYVSQTAWI-QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV- 751
+Y Q + G++++ + + + K L L + V
Sbjct: 333 SYKPQRIFPNYDGTVQQ--YLENASKDALSTSSWFFEEVTKRLNLHRLLE------SNVN 384
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT---ASSLFNDYVMEALSGKVVLLV 808
+LSGG+ Q++ +A L ++AD+Y+LD P S +D + E V ++
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER--KAVTFII 442
Query: 809 THQVDFLPAF-DSVLLMSDGEILRAAPYH 836
H + D +++ GE +A
Sbjct: 443 DHDLSIHDYIADRIIVF-KGEPEKAGLAT 470
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-20
Identities = 43/208 (20%), Positives = 75/208 (36%), Gaps = 32/208 (15%)
Query: 647 RNISLEV-RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ L + + + G+ G GK+T+L + GE+ G K +
Sbjct: 15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPN--SKVGKDEVLKRFRGK 72
Query: 706 SIRENILFGSPMDSH-------QYQETLERCSLIKDLELLPYGDNTEIGERGVN------ 752
I F + QY E + E+L D +
Sbjct: 73 EIYN--YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN 130
Query: 753 --------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
LSGG QR+ +A +L ++AD+Y+ D P S +D ++ + E L K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAIRELLKNKY 189
Query: 805 VLLVTH---QVDFLPAFDSVLLMSDGEI 829
V++V H +D+L D + ++
Sbjct: 190 VIVVDHDLIVLDYL--TDLIHIIYGESS 215
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
L + + G IGI+G G GKTT L I G + + ++ Y
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 1313 REGSL 1317
+G++
Sbjct: 343 YDGTV 347
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 30/218 (13%)
Query: 628 ISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I +K+ + + ++ NI+LEV G+KV I G GSGK+TLL AI G +P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 687 IQVYGK--------TAYVSQTAWIQTG--SIRENILFG---SPMDSHQYQETLERCSLIK 733
I + G Y + ++ + + +D + E L+ L +
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
++ ++ + LS GQ ++ + AL +I LD+PF VDA +
Sbjct: 120 EIL------RRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR 169
Query: 794 DYVMEALSGKVVLLVTH-QVDFLPAFDSVLLMSDGEIL 830
++ GK +LVTH + G L
Sbjct: 170 --YIKEY-GKEGILVTHELDMLNLYKEYKAYFLVGNRL 204
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L+ I+ G K+ I+G GSGKTTL A+ L+ P G I ++G
Sbjct: 20 SLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM 65
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-26
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 25/197 (12%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702
+ E + + + GE G+GK+TL+ + G + +G + Q
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 703 Q-TGSIRENILFGSP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSGG 756
+ G++R+ LF + Q+Q ++K L + D + V +LSGG
Sbjct: 425 KFPGTVRQ--LFFKKIRGQFLNPQFQT-----DVVKPLRIDDIID------QEVQHLSGG 471
Query: 757 QKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVMEALSGKVVLLVTHQVD 813
+ QR+ + AL ADIYL+D+P + +D+ S + +++ K +V H
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN--KKTAFIVEHDFI 529
Query: 814 FLPAF-DSVLLMSDGEI 829
D V++
Sbjct: 530 MATYLADKVIVFEGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-22
Identities = 52/295 (17%), Positives = 96/295 (32%), Gaps = 42/295 (14%)
Query: 627 AISIKS--------ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
AI I + + + +S K + RPGQ + + G G GKST L + G
Sbjct: 69 AIQIINLPTNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAG 125
Query: 679 EVPHTQGTIQVYGK-TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLEL 737
+ G + + + + +L + Q IK +
Sbjct: 126 KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKG-PV 184
Query: 738 LPYGDNT-----EIGERGVN-----------------LSGGQKQRIQLARALYQDADIYL 775
G+ + E LSGG+ QR + + Q+AD+Y+
Sbjct: 185 QKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYM 244
Query: 776 LDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRA 832
D+P S +D + ++ +L K V+ V H + L D V ++ +
Sbjct: 245 FDEPSSYLDVKQRLNAAQ--IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYG 302
Query: 833 APYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAKEIKKGHVEKQFE 887
AS +E + A + R + ++++ + F
Sbjct: 303 VVTLP--ASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFS 355
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-07
Identities = 13/85 (15%), Positives = 25/85 (29%)
Query: 1219 PEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1278
+ + VL F + ++G G+GKT
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1279 TLRGALFRLIEPARGKILVDGKLAE 1303
TL L ++P G+ + ++
Sbjct: 393 TLIKLLAGALKPDEGQDIPKLNVSM 417
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 1245 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAE- 1303
RY +S T G +G+VG G GK+T L +P G+ + E
Sbjct: 86 RYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Query: 1304 --YDEPMELMKREGSLFGQLVK 1323
Y EL + +K
Sbjct: 144 IKYFRGSELQNYFTKMLEDDIK 165
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-24
Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 585 PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK----GNIENVNRAISIKSASFSWEE- 639
P V G+F Q + I FL L+ N+R + + R + ++
Sbjct: 235 PGVYGIFSQPKGTRNGINEFLRG-YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 640 --SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVS 697
+ E++ G+ + I G G GK+T + + G T+G I+ AY
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKP 353
Query: 698 QTAWIQ-TGSIRENI--LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV-NL 753
Q G++ E + + S ++S+ Y+ L+K L ++ D R V L
Sbjct: 354 QYIKADYEGTVYELLSKIDASKLNSNFYKT-----ELLKPLGIIDLYD------REVNEL 402
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVMEALSGKVVLLVTH 810
SGG+ QR+ +A L +DADIYLLD+P + +D S + + K L+V H
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--EKTALVVEH 460
Query: 811 QVDFLPAF-DSVLLMSDGEI 829
V + D +++ +GE
Sbjct: 461 DVLMIDYVSDRLMVF-EGEP 479
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 8e-17
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 47/194 (24%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP------HTQGTIQVYG---------- 691
V+ G V I G G+GKST + + G++ + +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 692 ------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLP 739
K YV G + E + LE ++K LEL
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL------LKKADETGKLEE--VVKALEL-- 148
Query: 740 YGDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
+ ER + +LSGG+ QR+ +A AL ++A Y D+P S +D + +
Sbjct: 149 ----ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR--AIR 202
Query: 799 AL--SGKVVLLVTH 810
L GK VL+V H
Sbjct: 203 RLSEEGKSVLVVEH 216
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L+ + G IGIVG G GKTT L + EP GKI D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLT 348
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 48/229 (20%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------- 693
+ + +S EVR G+ + + G G+GKSTLLA + G +G+IQ G+
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSAT 69
Query: 694 ------AYVSQTAWIQTG-SIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
AY+SQ + + E L L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDV-----AGAL---ALDD 118
Query: 746 IGERGVN-LSGGQKQRIQLARALYQD-------ADIYLLDDPFSAVD-AHTASSLFNDYV 796
R N LSGG+ QR++LA + Q + LLD+P +++D A ++ +
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA------L 172
Query: 797 MEAL-----SGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLL 839
+ L G +++ +H ++ L+ G++L + ++L
Sbjct: 173 DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK-LAEYDEPMELM 1311
L +S G + +VG G+GK+TL + + +G I G+ L + +L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWS-ATKLA 72
Query: 1312 KREGSL-------FGQLVKEY 1325
L F V Y
Sbjct: 73 LHRAYLSQQQTPPFATPVWHY 93
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 9e-22
Identities = 46/248 (18%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ ++ ++++ + ++ I++ ++ G+ AI G G GKSTL G + + G I
Sbjct: 8 LKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 688 QVYGK-TAYVSQTAWIQTGSIRENI----------LFGS---------PMDSHQYQETLE 727
K Y + +RE+I LF + ++ ++ +
Sbjct: 66 LFDNKPIDYSRKGIM----KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR 121
Query: 728 RC--SLIKDLELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
+ + +K + D + LS GQK+R+ +A L + + +LD+P + +D
Sbjct: 122 KRVDNALKRTGIEHLKD------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 785 AHTASSLFNDYVMEAL---SGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLA 840
S + ++ + G +++ TH +D +P + D+V +M +G ++ ++ A
Sbjct: 176 PMGVSEIMK--LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
Query: 841 SSKEFQEL 848
+ +++
Sbjct: 234 EKEVIRKV 241
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+ + +L Y D LKGI+ + G I+G G GK+TL +++P+ G+IL
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1297 VDGKLAEYDE 1306
D K +Y
Sbjct: 67 FDNKPIDYSR 76
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 4e-21
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 26/223 (11%)
Query: 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
I + + S + + K + N+SL + G+ + + G GSGKSTLL + G + T
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 685 GTIQVYGKTA----------YVSQTAWIQ--TGSIRENILFGSPMDSHQYQETLERCSLI 732
G + G+ Q Q + + + F + + ++ + +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPL--VK 118
Query: 733 KDLELLPYG-DNTEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASS 790
K +E + G D +R LSGG+K+R+ +A + + DI +LD+P +D +
Sbjct: 119 KAMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 791 LFNDYVMEAL--SGKVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
L ++E GK V+L++H ++ + D V+++ G+ +
Sbjct: 177 LLR--IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1236 KVDICDLQIRYRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
++++ ++ + +PL L+ +S G + + G TGSGK+TL + LIEP
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1293 GKILVDGK 1300
G +L DG+
Sbjct: 62 GDVLYDGE 69
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 32/199 (16%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA--------YVSQT 699
I++ + G V G G GK+TLL I + +G I G ++ +
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86
Query: 700 AWI-QTGSIRENILF-----GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753
+ + S+ + + G ++ ++ + LE + ++ ++ L
Sbjct: 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------------LDLKKKLGEL 134
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQ 811
S G +R+QLA L +A+IY+LDDP A+D + + ++E L G V++
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIISSRE- 192
Query: 812 VDFLPAFDSVLLMSDGEIL 830
L D +
Sbjct: 193 --ELSYCDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
VL+ I+ T E G+ + G G GKTTL + ++P +G+I+ +G
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 71
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 44/227 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS 706
+ I++ +R G+ V + G GSGKST L + +G I + G T
Sbjct: 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDT---NLNK 97
Query: 707 IRENI--------LFGSPMDSHQYQETLERCSL--------------IKDLELLPYGDNT 744
+RE + LF H L +L K +ELL D
Sbjct: 98 VREEVGMVFQRFNLF-----PHM--TVLNNITLAPMKVRKWPREKAEAKAMELL---DKV 147
Query: 745 EIGERG----VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
+ ++ +LSGGQ QR+ +ARAL + I L D+P SA+D + + VM+ L
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQL 205
Query: 801 --SGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASSKE 844
G +++VTH++ F D VL M G I+ L +
Sbjct: 206 ANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE 1306
VLKGI+ G + ++G +GSGK+T L L + G+I++DG + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKD 92
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 7e-18
Identities = 50/236 (21%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 581 IRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEES 640
I + +F+ A + F + + E+ + S ++
Sbjct: 389 FTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGA- 447
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQT 699
K + L ++ ++ ICG G GKSTL+ AI +V Q +T YV
Sbjct: 448 --KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD--GFPTQEECRTVYVEHD 503
Query: 700 AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759
I ++L + + + I LSGG K
Sbjct: 504 --IDGTHSDTSVL--DFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA----LSGGWKM 555
Query: 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815
++ LARA+ ++ADI LLD+P + +D + L +Y+ G + ++H FL
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWL-VNYLNT--CGITSITISHDSVFL 608
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 8/187 (4%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVS 697
+SKP + +I+ + ++A+ G G+GKSTL+ + GE+ T G + + + AY+
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIK 742
Query: 698 QTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757
Q A+ E+ L +P + Q++ D +N + G
Sbjct: 743 QHAFAHI----ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGT 798
Query: 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL--LVTHQVDFL 815
+RI + + + Y + F + S +M + + LV +
Sbjct: 799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMV 858
Query: 816 PAFDSVL 822
D
Sbjct: 859 AEVDMKE 865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-07
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVT 809
LSGGQK ++ LA +Q + +LD+P + +D + +L +AL V+++T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIIT 955
Query: 810 HQVDFLPAF-DSVLLMSDGEI 829
H +F + V + DG +
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ +Y S + I+ +I ++G G+GK+TL L + P G++
Sbjct: 676 NMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
Query: 1301 L 1301
Sbjct: 736 C 736
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 2e-17
Identities = 114/749 (15%), Positives = 233/749 (31%), Gaps = 224/749 (29%)
Query: 467 NTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNV----E 522
+ + Q++++ L V +D AFV+ K+ ++ +++ E
Sbjct: 8 DFETGEHQYQYKDILSVFED--------AFVD---------NFDCKDVQDMPKSILSKEE 50
Query: 523 YKWLSAVQLRKAYNG--FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDP 580
+ + + A +G LFW+ L+
Sbjct: 51 IDHI--IMSKDAVSGTLRLFWT---------------------------------LLSKQ 75
Query: 581 IRIIPDVIGVFIQANVAF--SRIVNFLEAPELQSMN-IRQKGNIENVNRAISIKSASFSW 637
++ + ++ N F S I P + + I Q+ + N N+ + + S
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--- 132
Query: 638 EESSSKP--TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL-GEVPHTQGTIQVYGKTA 694
+P +R LE+RP + V I G +GSGK+ + + + +++
Sbjct: 133 ---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---- 185
Query: 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
W+ + SP + + L I D D++ + ++ S
Sbjct: 186 ------WLNLKNCN------SPETVLEMLQKL--LYQI-DPNWTSRSDHSSNIKLRIH-S 229
Query: 755 GGQKQRIQLARALYQDADIYL-LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ-- 811
+ R L Y++ L L + + N A + +L+T +
Sbjct: 230 IQAELRRLLKSKPYENC--LLVLLN------------VQNAKAWNAFNLSCKILLTTRFK 275
Query: 812 --VDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQK 869
DFL A A H L + + E L + +
Sbjct: 276 QVTDFLSA--------------ATTTHISL----DHHSMTLTPDEVK--SLLLKYLDCRP 315
Query: 870 SGMPAKEIKKGHVEKQFEVSKGDQLI---KQEERETGDIGLKPYIQYLNQNKGFLFFSI- 925
+P +E+ + +S +I ++ T D +++N +K L I
Sbjct: 316 QDLP-REVLTTN---PRRLS----IIAESIRDGLATWD-----NWKHVNCDK--LTTIIE 360
Query: 926 ASLSHLT----------FVI--------GQILQNSWLAANVENPNVSTLRLIVVYLLI-- 965
+SL+ L + +L W + V +L Y L+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEK 419
Query: 966 -GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLS 1024
ST+ + S L + + + + +L +++ + P +F S DL
Sbjct: 420 QPKESTISIPSIYL-ELKVKLENEYALHRSIVDH-YNIPKTFD------------SDDLI 465
Query: 1025 IVDLDIPFSLIFAVGATTNACSNLGV-LAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKEL 1083
LD F S++G L + ++FL R F+ K
Sbjct: 466 PPYLDQYF------------YSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQK-- 506
Query: 1084 MRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLI 1143
+R + T + + L T++ + + N P + ++
Sbjct: 507 IRHDSTAWNASGSILN-------TLQQLKFYKPYICDN--------DPKYERLVNA--IL 549
Query: 1144 QRLETLSATVISSAAFCMV---LLPPGTF 1169
L + +I S ++ L+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 4e-09
Identities = 113/758 (14%), Positives = 214/758 (28%), Gaps = 252/758 (33%)
Query: 161 VLSIFAAILSKDVTIKTALDVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEA 220
+LS+F + K D+ + EE D I
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPK------------SILSKEEID-HI------------- 54
Query: 221 NGLGKGDSVSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYF 280
+ D+VS FW L + +K + + + +
Sbjct: 55 --IMSKDAVSGT----------LRLFWTLLSKQEEMVQKFVEEVLRIN-----------Y 91
Query: 281 QFLDQLNKQKQAEPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVA 340
+FL QPS++ + I RD + +F
Sbjct: 92 KFL----MSPIKTEQRQPSMMTRMYI-EQRDRLYND------------NQVF-------- 126
Query: 341 ESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL-IGLKVRSLLTAAIYRKQLRLSN 399
+Y SRL LK+R L +LR
Sbjct: 127 -----------------------------AKYNVSRLQPYLKLRQAL------LELR-PA 150
Query: 400 AARLMH----SGGEIMNYVTVDAYRI-GEFPFWFHQIWTTSVQLCIALIILFHAVGLATI 454
L+ SG + +Y++ + F W +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLN--------------LKNCNS 194
Query: 455 AALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNA 514
V+ + L ++ + ++ + + +L+ S + ++ +L + + +N
Sbjct: 195 PETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKPY-ENC 246
Query: 515 IEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLY-------ASNV 567
+ +L NV+ +N F S +L++T FL+ S
Sbjct: 247 LLVLLNVQNAKA--------WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 568 FTFVATLRL--------VQD-P---IRIIP---DVIGVFIQANVA------------FSR 600
T L QD P + P +I I+ +A +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 601 I----VNFLEAPELQ----SMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLE 652
I +N LE E + +++ + + I S W + M ++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFP----PSAH--IPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENIL 712
+ + + ++ + L + ++ I +
Sbjct: 412 HK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--------------IVD--- 451
Query: 713 FGSPMDSHQYQETLERCSLIKDLELLPYGDN---TEIGERGVNLSG-GQKQRIQLARALY 768
Y S DL + PY D + IG +L +R+ L R ++
Sbjct: 452 --------HYNIPKTFDS--DDL-IPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVF 497
Query: 769 QD---------ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFD 819
D D + S ++ + Y+ + K LV +DFLP +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERLVNAILDFLPKIE 556
Query: 820 SVLLMSD-GEILRAAPYHQLLASSKEFQELVSAHKETA 856
L+ S ++LR A L+A + E AHK+
Sbjct: 557 ENLICSKYTDLLRIA----LMAEDEAIFE--EAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 4e-08
Identities = 91/605 (15%), Positives = 188/605 (31%), Gaps = 182/605 (30%)
Query: 813 DFLPAFDSVLLMSD-GEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSG 871
F AF D ++ ++ S +E ++ + +G+ RL S++
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 872 MPAKEIKKGHVEKQFE--VSKGDQLIKQEERETGDIGLKPYIQYLN--QNKGFLF--FSI 925
M ++ + + ++ +S IK E+R+ + + YI+ + N +F +++
Sbjct: 78 M-VQKFVEEVLRINYKFLMSP----IKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNV 131
Query: 926 ASLSHLTFVIGQILQN-----------------SWLAANVENPNVSTLRLI------VVY 962
+ L + Q L +W+A +V + ++ + +
Sbjct: 132 SRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIFW 186
Query: 963 LLIGFVST---LFLMSRSLSSVVLGIRSSKSLFS----QLLNSLFRAPMSFYDSTPLGR- 1014
L + ++ + M + L + +S+S S ++S+ S P
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 1015 --ILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRL 1072
+L V + + F + C ++L +
Sbjct: 247 LLVLLNV-QNAKAWNA-------FNLS-----C-----------KILLTT---------- 272
Query: 1073 QRYYFVTAKELMRLNG-TTKSLVANHLAESIAGAMTIRAFEEED--RFFAKNLDLIDT-- 1127
R+ VT L+ TT + +H + + ++ K LD
Sbjct: 273 -RFKQVTD----FLSAATTTHISLDHHSMT---------LTPDEVKSLLLKYLDCRPQDL 318
Query: 1128 -----NASPFFHS-FAA---------NEWLIQRLETLSATVISSAAFCMVLLPPGTFTPG 1172
+P S A + W + L+ T+I S + +L P +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIES---SLNVLEPAEYRKM 374
Query: 1173 FIGMAL--------SYGLSL-----NSSLVMSIQNQC---TLAN-----YIISVERLNQY 1211
F +++ + LSL S VM + N+ +L IS+ + Y
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--Y 432
Query: 1212 MHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGI 1269
+ + + +R +V +I + D P L + G H I
Sbjct: 433 LELKVKLENEYALHR-----SIVDHYNIPK---TFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 1270 VGRTGSGKTTLRGALFRLIEPARGKILVD-----GKLAEYDEPMELMKREGSLFGQLVKE 1324
+ R LFR + +D K+ + QL K
Sbjct: 485 -------EHPERMTLFR-------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KF 529
Query: 1325 YWSHL 1329
Y ++
Sbjct: 530 YKPYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 27/224 (12%)
Query: 1120 KNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGF--IGMA 1177
+ D++ F +F + ++ + +++S +++ +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKD-----VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 1178 LSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPP--NWPVVG 1235
LS + V + NY + + PS + + R + V
Sbjct: 72 LSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGAL---FRLIEPAR 1292
K ++ R L L+ + I G GSGKT + + +++
Sbjct: 128 KYNVS------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 1293 GKI--LVDGKLAEYDEPMELMKREGSLFGQLVKEYWSHLHSAES 1334
KI L L + P +++ L Q+ + S + +
Sbjct: 182 FKIFWL---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-16
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 42/221 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAW----- 701
+ISL + PG+ + I G G GK+TLL + G G I + GKT + T
Sbjct: 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80
Query: 702 -----IQTG------SIRENILFGSPMDSHQYQETLERCSLIKD-LEL--LPYGDNTEIG 747
+Q G ++ NI +G + + +R I+ LEL + E+
Sbjct: 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLELTGIS-----ELA 132
Query: 748 ERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKV 804
R + LSGGQ+QR LARAL D ++ LLD+PFSA+D + D ++ AL +GK
Sbjct: 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALRANGKS 191
Query: 805 VLLVTH-QVDFLPAF---DSVLLMSDGEIL-RAAP---YHQ 837
+ V+H + + A D + +M G IL A+P Y Q
Sbjct: 192 AVFVSHDREE---ALQYADRIAVMKQGRILQTASPHELYRQ 229
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 49/219 (22%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGK-TAYVS--QTAW 701
+N++L ++ G+ V+I G GSGKST+L I+G + P T+G + + T + +
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKP-TEGEVYIDNIKTNDLDDDELTK 79
Query: 702 I---------QT------GSIRENI---LFGSPMDSHQYQETLERCSLIKDLELLPYGDN 743
I Q + EN+ L + +E +R LE L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----LECL---KM 131
Query: 744 TEIGERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
E+ ER N LSGGQ+QR+ +ARAL + I L D P A+D+ T +M+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK-----IMQ 186
Query: 799 AL------SGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
L GK V++VTH ++ + ++ + DGE+ R
Sbjct: 187 LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 36/234 (15%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694
+ IS E+ G+ + G G+GK+T L I + + G + V+G +
Sbjct: 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91
Query: 695 YVSQTA---WIQTGSIRENILFGSPMDSHQYQETLERCS-LIKDLELLPYGDNTEIGERG 750
Y+ + A G E + F + + E E + L +R
Sbjct: 92 YLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----DRV 144
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVT 809
S G +++ +ARAL + + +LD+P S +D A + + + + G +L+ +
Sbjct: 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLTILVSS 203
Query: 810 H---QVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE------FQELVSAHKE 854
H +V+FL D + L+ +G I+ +L K F+E+V +
Sbjct: 204 HNMLEVEFLC--DRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSEN 255
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 5e-15
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 44/214 (20%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGK-TAYVS--QTAW 701
+ ISL V+ G+ V+I G GSGKSTLL ILG + P T+G + + GK Y + + +
Sbjct: 21 KGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAP-TEGKVFLEGKEVDYTNEKELSL 78
Query: 702 IQTGSI---------------RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
++ + EN++ PM ++ + + LL +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIV--PM---LKMGKPKKEAKERGEYLL---SELGL 130
Query: 747 GERGVN----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS- 801
G++ LSGG++QR+ +ARAL + + D+P +D+ VM+
Sbjct: 131 GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VMDIFLK 185
Query: 802 ----GKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
G +++VTH+ + L M DG+++
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQTAWIQTG 705
R +S ++R G+ V + G GSGK+T+L I G E P T+G + + GK G
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLPPQKRNVG 90
Query: 706 ------------SIRENILFGSPMDSHQYQETLERCS-LIKDLELLPYGDNTEIGERGVN 752
++ +N+ FG E R L++ + L Y + R +
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN------RFPH 144
Query: 753 -LSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
LSGGQ+QR+ LARAL + L D+PF+A+D
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT 178
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 49/265 (18%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYGK-TAYVSQTAW--- 701
N+SL V GQ + G G+GKSTL+ + L E P T+G++ V G+ +S++
Sbjct: 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTKA 103
Query: 702 -------------IQTGSIRENILFGSPMDSHQY--QETLERCSLIKDLELLPYGDNTEI 746
+ + ++ N+ P++ E R + ELL +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVAL--PLELDNTPKDEVKRRVT-----ELL---SLVGL 153
Query: 747 GERG----VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS- 801
G++ NLSGGQKQR+ +ARAL + + L D SA+D T S ++E L
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS-----ILELLKD 208
Query: 802 -----GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASSKE--FQELVSAHK 853
G +LL+TH++D + D V ++S+GE++ ++ + K Q+ + +
Sbjct: 209 INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTL 268
Query: 854 ETAGSERLAEVTPSQKSGMPAKEIK 878
E E ++ ++
Sbjct: 269 HLDIPEDYQERLQAEPFTDCVPMLR 293
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1237 VDICDLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
+ + ++ + + + L +S G G++G +G+GK+TL + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1295 ILVDGK 1300
+LVDG+
Sbjct: 85 VLVDGQ 90
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 5e-12
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI-QTG 705
+ I L+V GQ V + G G+GK+T L+AI G V +G I G+ I + G
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 706 --------------SIRENILFG--SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
++ EN++ G + D + LE L P + ER
Sbjct: 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-----RLKER 132
Query: 750 ----GVNLSGGQKQRIQLARALYQDADIYLLDDP 779
G LSGG++Q + + RAL + ++D+P
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 1238 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297
++ L + Y + +KGI G + ++G G+GKTT A+ L+ +GKI+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1298 DGKLAEYDEPMELMKR------EG-SLFGQL-VKE 1324
+G+ + + EG +F +L V E
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE 100
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 37/160 (23%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGK-----------TA 694
N+SL+V G+ I G G+GK+ L I G VP G I + GK A
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEKHDIA 75
Query: 695 YVSQ--------TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746
+V Q +++N+ FG M + + + +DL++ D
Sbjct: 76 FVYQNYSLFPHMN-------VKKNLEFGMRMKKIKDPKRVLD--TARDLKIEHLLD---- 122
Query: 747 GERGVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
R LSGG++QR+ LARAL + I LLD+P SA+D
Sbjct: 123 --RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 27/199 (13%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696
N+ E+ + G G+GKS L I G V +G +++ G +V
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 697 SQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN-LS 754
Q A S+ NI +G + + + E R + E L + +R LS
Sbjct: 76 PQDYALFPHLSVYRNIAYG--LRNVERVERDRRVR--EMAEKL---GIAHLLDRKPARLS 128
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLLVTH- 810
GG++QR+ LARAL + LLD+P SAVD T L + + + + +L VTH
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVPILHVTHD 186
Query: 811 QVDFLPAFDSVLLMSDGEI 829
++ D V +M +G I
Sbjct: 187 LIEAAMLADEVAVMLNGRI 205
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 9e-10
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKTAYVSQTAWI 702
+ N+++ + G++ I G G+GK+T + I G +VP + G + + V+ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRL--VASNGKL 75
Query: 703 QTG-------------------SIRENILFG---SPMDSHQYQETLERCSLIKDLELLPY 740
+ ENI F M + ++ +E + I L++
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI--LDIHHV 133
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ LSG Q+QR+ LARAL +D + LLD+PFS +DA
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------AY 695
NI+L+++ G+ +A+ G GSGKSTLL I G T G I K
Sbjct: 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79
Query: 696 VSQT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
V Q A ++ +NI F + + + + + L + +
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM--LHIDKLLNR-----YPW 132
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
LSGGQ+QR+ +ARAL ++ ++ LLD+P S +DA
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTH 810
LSGGQ+QR+ +ARAL + D+ L D+P SA+D + +M+ L GK +++VTH
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKTMVVVTH 211
Query: 811 QVDFLPAF---DSVLLMSDGEILRAAPYHQLLASSKE 844
++ F A V+ + G+I Q+ + +
Sbjct: 212 EMGF--ARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYGKT 693
+ +SL+ R G ++I G GSGKST L I E P ++G I V G+
Sbjct: 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQN 69
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VLKG+S G I I+G +GSGK+T + L +P+ G I+V+G+ +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1313 REGS 1316
+
Sbjct: 81 KVAD 84
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------AY 695
++L ++ G+ + + G G GK+T L I G T+G I + +
Sbjct: 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 696 VSQT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
V Q+ A ++ ENI F + + + + + L++ +
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL--LQIEELLNR-----YPA 140
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
LSGGQ+QR+ +ARA+ + D+ L+D+P S +DA
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT---------- 693
+ +S EV+ G+ VA+ G G GK+T L + G T G I
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 694 -AYVSQT-AWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748
V Q A ++ ENI F + + ++ + + L + D
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK--LLIDNLLDR----- 129
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ LSGGQ+QR+ LARAL + + L D+P S +DA
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 34/161 (21%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI-QTG- 705
+S+ V G I G GSGKSTL+ I G + +G + K + A + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 706 -------------SIRENILFGS-------------PMDSHQYQETLERC-SLIKDLELL 738
++ EN+L G + +E +E+ +++ L+L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779
D + LSGGQ + +++ RAL + + ++D+P
Sbjct: 145 HLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 19/134 (14%)
Query: 706 SIRENILFGSPMDSHQYQETLERCSLIKDLEL----LPYGDNTEIGERGVN-----LSGG 756
E + K E+ + G LSGG
Sbjct: 193 YKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGG 252
Query: 757 QKQRIQLA------RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV--VLLV 808
++ + LA L + + +LD+P +D L +ME K+ V+LV
Sbjct: 253 ERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMERYLKKIPQVILV 310
Query: 809 THQVDFLPAFDSVL 822
+H + A D V+
Sbjct: 311 SHDEELKDAADHVI 324
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 32/165 (19%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
+R +SLEV+ G+ + + G G GK+T L I G ++G I + K V+
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKL--VADPEKGI 74
Query: 704 TG--------------------SIRENILFG---SPMDSHQYQETLERCSLIKDLELLPY 740
++ +NI F + + + + + + L L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL--LGLTEL 132
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ + LSGGQ+QR+ L RA+ + ++L+D+P S +DA
Sbjct: 133 LNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIQVYGK 692
K +R +SL+V PG+ AI G GSGKSTL A + G EV T GT++ GK
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKGK 84
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIQVYGK 692
+ ++ ++L V G+ A+ G G+GKSTL + G V +G I + G+
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEILLDGE 67
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 32/162 (19%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKTAYVSQTAW 701
++I+L++ G+ V G G GKSTLL I G + T G + + K ++ T
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKR--MNDTPP 72
Query: 702 IQTG--------------SIRENILFGSPMDSHQYQETLERCSLIKD----LELLPYGDN 743
+ G S+ EN+ FG + + + +R + L+L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDR 129
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ LSGGQ+QR+ + R L + ++LLD+P S +DA
Sbjct: 130 -----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 753 LSGGQKQRIQLA------RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKV 804
LSGG++ + LA L + + +LD+P +D L +ME
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMERYLKKIPQ 115
Query: 805 VLLVTHQVDFLPAFDSVL 822
V+LV+H + A D V+
Sbjct: 116 VILVSHDEELKDAADHVI 133
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 6e-04
Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 59/353 (16%)
Query: 591 FIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNIS 650
+ +V +++ + EL + K ++E I+I S +
Sbjct: 21 RSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVF---------- 70
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGE-------VPHTQGTIQV-YGKTAYVSQTAWI 702
++ + G++ GKST L A++GE P T + YG V+
Sbjct: 71 -------RLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFN- 122
Query: 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG------ERGVNLS-- 754
G + + F + + + + + P D + ++G+ +
Sbjct: 123 -DGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDS 181
Query: 755 ---GGQKQRIQLARALYQDAD--IYLLD--DPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
+ R +L+ + ++++ P + + +Y+ G V
Sbjct: 182 PGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR----YLENYIKG--RGLTVFF 235
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPS 867
+ + D + +S++ D E L+A+ + E + + ER+ E+
Sbjct: 236 LVNAWDQVR--ESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFEL--- 290
Query: 868 QKSGMPAKEIKKGHVEKQFEVSKGDQLI----KQEERETGDIGLKPYIQYLNQ 916
S + A + + + + + + + RE L+
Sbjct: 291 --SSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARL 341
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1335 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-63 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-60 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-59 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-14 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-53 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-14 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-52 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-13 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-50 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-15 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-30 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-08 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-30 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-08 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-30 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-08 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-10 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-06 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-28 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-09 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-27 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-07 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-09 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-08 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-26 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-08 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-07 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-09 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 3e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 8e-04 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 214 bits (545), Expect = 6e-63
Identities = 89/268 (33%), Positives = 146/268 (54%), Gaps = 11/268 (4%)
Query: 589 GVFIQANVAFS--RIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTM 646
G+ ++ AF LE + + + + + NV SFS P +
Sbjct: 2 GIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNV---------SFSHLCLVGNPVL 52
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGS 706
+NI+L + G+ +AI G GSGK++LL ILGE+ ++G I+ G+ ++ SQ +WI G+
Sbjct: 53 KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGT 112
Query: 707 IRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766
I+ENI+FG D ++Y+ ++ C L +D+ DNT +GE GV LSGGQ+ RI LARA
Sbjct: 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826
+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L++
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 827 GEILRAAPYHQLLASSKEFQELVSAHKE 854
G + +L + +F + +
Sbjct: 233 GSSYFYGTFSELQSLRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.8 bits (181), Expect = 1e-14
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 1203 ISVERLN-QYMHVPSEAPEVVEDNRPP-PNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1260
I +E + + E E V+ + + V L + P VLK I+
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1261 FEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
E G + I G TGSGKT+L + +E + G I G+++
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS 100
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 203 bits (519), Expect = 8e-60
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 16/245 (6%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
IE I I SF + ++ P +++I+L + G+ VA G G GKSTL+ I
Sbjct: 10 IEIKQGRIDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 681 PHTQGTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSH-QYQETL 726
T G I + G V Q + + +++ENIL G P + + E
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 727 ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
+ + + LP G +TE+GERGV LSGGQKQR+ +AR + I +LD+ SA+D
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 787 TASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846
+ S + + + + L+V H++ + D ++++ +G I+ + +L+A ++
Sbjct: 189 SESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247
Query: 847 ELVSA 851
L S
Sbjct: 248 HLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 76.4 bits (188), Expect = 9e-16
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 1228 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRL 1287
P G++DI + +Y + +LK I+ + E G + VG +G GK+TL + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 1288 IEPARGKILVDGK 1300
+ G+IL+DG
Sbjct: 68 YDVTSGQILIDGH 80
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 200 bits (511), Expect = 8e-59
Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 17/246 (6%)
Query: 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
I+ + ++ +F++ P +RNI+L++ G+ VA+ G GSGKST+ + I
Sbjct: 7 IDRATGDLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
Query: 681 PHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSP--MDSHQYQET 725
+G I + G + A VSQ + ++ NI + Q +E
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785
+ + + G +T IGE GV LSGGQ+QRI +ARAL +D+ I +LD+ SA+D
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845
+ ++ + E + L++ H++ + D ++++ DG I+ + +LLA +
Sbjct: 186 ESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 244
Query: 846 QELVSA 851
+L
Sbjct: 245 AQLHKM 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 71.8 bits (176), Expect = 3e-14
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G ++ ++ Y L+ I+ G + +VGR+GSGK+T+ + R + G
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 1295 ILVDGKLAEYDEPMELMKREG 1315
IL+DG L +
Sbjct: 72 ILMDGHDLREYTLASLRNQVA 92
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (469), Expect = 3e-53
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 26/251 (10%)
Query: 622 ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
++ + + SF++ ++ ++ +RPG+ A+ G GSGKST+ A +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 682 HTQGTIQVYGKT-------------AYVSQTAWIQTGSIRENILFGSPMD--SHQYQETL 726
T G + + GK A V Q + S++ENI +G +
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 727 ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 786
+ + LP G +TE+ E G LSGGQ+Q + LARAL + + +LDD SA+DA+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 787 TASSLFNDYVMEAL------SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ V + L + VLL+T + + D +L + G I + QL+
Sbjct: 186 S-----QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 841 SSKEFQELVSA 851
+ +V A
Sbjct: 241 KKGCYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (177), Expect = 2e-14
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 1231 WPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI 1288
+ G V D+ Y RPD VL+G++ T G +VG GSGK+T+ L L
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1289 EPARGKILVDGKLAEYDEPMELMKREGSLF 1318
+P G++L+DGK E L ++ ++
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVG 94
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 183 bits (465), Expect = 1e-52
Identities = 64/238 (26%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+S + F++++S + +R+IS E +P +A G G GKST+ + + T G I
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 688 QVYGKT-------------AYVSQTAWIQTGSIRENILFGSP--MDSHQYQETLERCSLI 732
+ G+ +VSQ + I G+IREN+ +G + L+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792
+E +P NTE+GERGV +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 793 NDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850
+ + G+ L++ H++ + D + + G+I + +++L+A+ + + VS
Sbjct: 180 K-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 69.5 bits (170), Expect = 2e-13
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+ Y DS +L+ IS + I G +G GK+T+ L R +P G+I +DG+
Sbjct: 6 HVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 1301 LAEYDEPMELMKR 1313
+ +
Sbjct: 65 PIDNISLENWRSQ 77
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 175 bits (445), Expect = 5e-50
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 17/242 (7%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I+ ++ F ++ S + NI+L ++ G+ + I G GSGKSTL I G +
Sbjct: 2 ITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 688 QVYGK-------------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIK 733
+ G V Q + SI +NI +P M + +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
+ L G NT +GE+G LSGGQ+QRI +ARAL + I + D+ SA+D + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 794 DYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK-EFQELVSAH 852
+ + + G+ V+++ H++ + D +++M G+I+ + +LL+ + + L
Sbjct: 181 N-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 853 KE 854
+
Sbjct: 240 SD 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 75.3 bits (185), Expect = 2e-15
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
+ +++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1297 VDGKLAEYDEPMELMKREGSLF 1318
+DG +P L ++ G +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVL 83
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 120 bits (301), Expect = 1e-30
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692
+S+ V G I G GSGKSTL+ I G + +G + K
Sbjct: 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80
Query: 693 TAYVSQTA-WIQTGSIRENILFGSPMDSHQYQETLERCSLIKD--------LELLPYGDN 743
QT ++ ++ EN+L G +L I ++L +
Sbjct: 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 140
Query: 744 TEIGERGV-NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG 802
+ + +R LSGGQ + +++ RAL + + ++D+P + V A +FN + G
Sbjct: 141 SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 200
Query: 803 KVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQELVSA 851
L++ H++D + + D + +M +G+I+ + + + ++V
Sbjct: 201 ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 55.4 bits (133), Expect = 1e-08
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
L G+S + G I+G GSGK+TL + ++ G++ + K EP EL
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78
Query: 1313 REGSLFGQ 1320
Q
Sbjct: 79 YGIVRTFQ 86
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 119 bits (300), Expect = 1e-30
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-----------AY 695
++L ++ G+ + + G G GK+T L I G T+G I + +
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82
Query: 696 VSQTAWIQTG-SIRENILFGSPMDSHQYQETLERC-SLIKDLELLPYGDNTEIGERGVNL 753
V Q+ + ++ ENI F + E +R + L++ + L
Sbjct: 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----RYPAQL 137
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL---SGKVVLLVTH 810
SGGQ+QR+ +ARA+ + D+ L+D+P S +DA ++ ++ L + VTH
Sbjct: 138 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA--EIKKLQQKLKVTTIYVTH 195
Query: 811 QVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS--SKEFQELVSA 851
D + +M+ G++L+ ++ S + A
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGA 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.8 bits (132), Expect = 1e-08
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
+V + +L R+ + + ++ T + G + ++G +G GKTT + L EP G+I
Sbjct: 6 EVKLENLTKRF--GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1296 LVDGKLAEYDEPM 1308
+ Y P
Sbjct: 64 YFGDRDVTYLPPK 76
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 118 bits (298), Expect = 2e-30
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 628 ISIKSASFSWEESSSKPT-MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I +K+ + +++ ++N++L ++ G+ V+I G GSGKST+L I T+G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 687 IQVYGKT-----------------AYVSQ-TAWIQTGSIRENILFGSPMDSHQYQETLER 728
+ + +V Q I + EN+ ER
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 729 CSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
+ + + + LSGGQ+QR+ +ARAL + I L D P A+D+ T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 789 SSLFNDYVMEAL---SGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829
+ +++ L GK V++VTH ++ + ++ + DGE+
Sbjct: 182 EKIMQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 54.5 bits (131), Expect = 1e-08
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1237 VDICDLQIRYRPDSPL--VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
+ + ++ Y+ + LK ++ + G + I+G +GSGK+T+ + L +P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1295 ILVDGK 1300
+ +D
Sbjct: 62 VYIDNI 67
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 114 bits (286), Expect = 1e-28
Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 40/239 (16%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------- 693
+ +SL+ R G ++I G GSGKST L I ++G I V G+
Sbjct: 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78
Query: 694 -------------AYVSQ-TAWIQTGSIRENILFG----SPMDSHQYQETLERCSLIKDL 735
V Q ++ EN++ + H +E + + +
Sbjct: 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK--YLAKV 136
Query: 736 ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795
+ LSGGQ+QR+ +ARAL + D+ L D+P SA+D +
Sbjct: 137 GIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 192
Query: 796 VMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS--SKEFQELVSA 851
A GK +++VTH++ F V+ + G+I Q+ + S Q+ +
Sbjct: 193 QQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKG 251
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 59.1 bits (143), Expect = 7e-10
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
K+ + DL RY VLKG+S G I I+G +GSGK+T + L +P+ G I
Sbjct: 2 KLHVIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1296 LVDGK 1300
+V+G+
Sbjct: 60 IVNGQ 64
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (283), Expect = 2e-28
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 20/213 (9%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI---------------QVYG 691
+ I L+V GQ V + G G+GK+T L+AI G V +G I G
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
++ EN++ G + + +E ++R L L P + + G
Sbjct: 83 IALVPEGRRIFPELTVYENLMMG--AYNRKDKEGIKR-DLEWIFSLFP-RLKERLKQLGG 138
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGG++Q + + RAL + ++D+P + S +F G +LLV
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 812 VDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
++ G+I+ +LL +
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 47.6 bits (113), Expect = 3e-06
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 1238 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297
++ L + Y + +KGI G + ++G G+GKTT A+ L+ +GKI+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1298 DGKLAEYDEPMELMKREGSLFGQ 1320
+G+ + + +L +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPE 88
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (275), Expect = 7e-28
Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 23/198 (11%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ I+ S ++ KP + I++ + G V G G GK+TLL I + +G I
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 688 QVYG--------KTAYVSQ-TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELL 738
G K ++ + + S+ + + + + Y + + ++ LE +
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL----YGVKVNKNEIMDALESV 114
Query: 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798
+ ++ ++ LS G +R+QLA L +A+IY+LDDP A+D + + ++E
Sbjct: 115 ---EVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILE 170
Query: 799 ALS--GKVVLLVTHQVDF 814
L G V++ ++ +
Sbjct: 171 ILKEKGIVIISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 55.3 bits (133), Expect = 5e-09
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
K++I DL + Y D P VL+ I+ T E G+ + G G GKTTL + ++P +G+I
Sbjct: 2 KLEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1296 LVDGK 1300
+ +G
Sbjct: 59 IYNGV 63
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 110 bits (276), Expect = 1e-27
Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 23/231 (9%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +++ + +W E ++I+L++ G+ V G G GKSTLL I G T G +
Sbjct: 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 688 QVYGK-----------TAYVSQTAWIQTG-SIRENILFGSPMDSHQYQETLERCS-LIKD 734
+ K V Q+ + S+ EN+ FG + + + +R + + +
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 735 LELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794
L+L D + LSGGQ+QR+ + R L + ++LLD+P S +DA + +
Sbjct: 118 LQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 795 YV-MEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
+ G+ ++ VTH D ++++ G + + +L
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 51.5 bits (123), Expect = 2e-07
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
V + ++ + +V K I+ G + VG +G GK+TL + L G +
Sbjct: 1 VQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1297 VDGK 1300
+ K
Sbjct: 59 IGEK 62
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 108 bits (272), Expect = 6e-27
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692
R +SLEV+ G+ + + G G GK+T L I G ++G I + K
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 693 ---TAYVSQ-TAWIQTGSIRENILFGSPMDSHQYQETLERC-SLIKDLELLPYGDNTEIG 747
A V Q A ++ +NI F + QE +R + + L L +
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PR 138
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVL 806
E LSGGQ+QR+ L RA+ + ++L+D+P S +DA + + ++ G +
Sbjct: 139 E----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 807 LVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
VTH D + +M+ G + + ++
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 52.2 bits (125), Expect = 1e-07
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
V + D+ + ++ +S + G + ++G +G GKTT + L EP+RG+I
Sbjct: 3 GVRLVDVWKVF--GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1296 LVDGKLAEYDEPMELMK 1312
+ KL E +
Sbjct: 61 YIGDKLVADPEKGIFVP 77
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 108 bits (270), Expect = 9e-27
Identities = 51/243 (20%), Positives = 99/243 (40%), Gaps = 27/243 (11%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
A+ +K K ++ IS E+ G+ + G G+GK+T L I + + G
Sbjct: 2 AVVVKDLRKRI---GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 687 IQVYG------------KTAYVSQTAWIQTG-SIRENILFGSPMDSHQYQETLERCSLIK 733
+ V+G +Y+ + A E + F + + E E + +
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM--VER 116
Query: 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793
E+ G+ +I +R S G +++ +ARAL + + +LD+P S +D A +
Sbjct: 117 ATEIAGLGE--KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 174
Query: 794 DYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKE------FQ 846
+ G +L+ +H + + D + L+ +G I+ +L K F+
Sbjct: 175 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 234
Query: 847 ELV 849
E+V
Sbjct: 235 EVV 237
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 56.2 bits (135), Expect = 4e-09
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G V + DL+ R +LKGIS E G G++G G+GKTT + LI+P+ G
Sbjct: 1 GAVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1295 ILVDGKLAEYDEPMELMKREGSLF 1318
+ V GK +EP E+ K L
Sbjct: 59 VTVFGK-NVVEEPHEVRKLISYLP 81
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 108 bits (270), Expect = 1e-26
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 25/217 (11%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692
N+SL V GQ + G G+GKSTL+ + T+G++ V G+
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81
Query: 693 --TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERC-SLIKDLELLPYGDNTEIGE 748
+ Q + + ++ N+ +D+ E R L+ + L D+
Sbjct: 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS----- 136
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLL 807
NLSGGQKQR+ +ARAL + + L D+ SA+D T S+ + G +LL
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196
Query: 808 VTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
+TH++D + D V ++S+GE++ ++ + K
Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 233
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 54.1 bits (130), Expect = 2e-08
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1237 VDICDLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
+ + ++ + + + L +S G G++G +G+GK+TL + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1295 ILVDGK 1300
+LVDG+
Sbjct: 62 VLVDGQ 67
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 8e-26
Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 14/214 (6%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TAYVSQ 698
+ + +S EVR G+ + + G G+GKSTLLA + G +G+IQ G+ A+ +
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSAT 68
Query: 699 TAWIQTG--SIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755
+ S ++ F +P+ + + + + + + ++G LSG
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 128
Query: 756 GQKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
G+ QR++LA + Q + LLD+P +++D S+L G +++
Sbjct: 129 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMS 188
Query: 809 THQVDFLPAF-DSVLLMSDGEILRAAPYHQLLAS 841
+H ++ L+ G++L + ++L
Sbjct: 189 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (125), Expect = 9e-08
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
L +S G + +VG G+GK+TL + + +G I G+ E +L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1313 REGSLFGQL 1321
L Q
Sbjct: 73 HRAYLSQQQ 81
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 100 bits (249), Expect = 4e-24
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 25/231 (10%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I I+S S W+ ++ N+SL+V G+ I G G+GK+ L I G G I
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 688 QVYGK-----------TAYVSQ-TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDL 735
+ GK A+V Q + ++++N+ FG M + + + +DL
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD--TARDL 115
Query: 736 ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795
++ D + LSGG++QR+ LARAL + I LLD+P SA+D T +
Sbjct: 116 KIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 796 V-MEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKE 844
+ + VL +TH D + ++ DG++++ ++ E
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 50.4 bits (120), Expect = 3e-07
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296
++I L +++ L +S E G I+G TG+GKT + P G+IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1297 VDGK----LAEYDEPMELMKREGSLFGQLVKEYWSHLH 1330
+DGK L+ + + + SLF + +
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG 96
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.1 bits (241), Expect = 6e-23
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 24/233 (10%)
Query: 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I +K+ S ++ + N+++ + G++ I G G+GK+T + I G + G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 687 IQVYG----------------KTAYVSQ-TAWIQTGSIRENILFGSPMDSHQYQETLERC 729
+ K V Q A + ENI F +E +R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 730 SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
+ + + + N E LSG Q+QR+ LARAL +D + LLD+PFS +DA
Sbjct: 122 EEVAKILDIHHVLNHFPRE----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 790 SLFNDYV-MEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLA 840
S +++ G +L+V+H + A D V ++ G++++ L
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 57.4 bits (138), Expect = 2e-09
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ + ++ ++ + L ++ E G + GI+G +G+GKTT + L P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1296 LVDGKLAEYDEPMELMKR 1313
D +L + + +
Sbjct: 63 YFDDRLVASNGKLIVPPE 80
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.5 bits (237), Expect = 2e-22
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696
N+ E+ + G G+GKS L I G V +G +++ G +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 697 SQ-TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755
Q A S+ NI +G ER ++++ G + + LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERV-----ERDRRVREM-AEKLGIAHLLDRKPARLSG 129
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTHQVDF 814
G++QR+ LARAL + LLD+P SAVD T L + ++ +L VTH +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 815 LPAF-DSVLLMSDGEILRAAPYHQLLASSKEF-QELVSA 851
D V +M +G I+ +L ++ E +SA
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 49.6 bits (118), Expect = 8e-07
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 1257 ISCTFE-GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK----LAEYDEPMELM 1311
++ FE G ++G TG+GK+ + +++P RG++ ++G L + +
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 1312 KREGSLFGQLVKEYWSHLH 1330
++ +LF L
Sbjct: 76 PQDYALFPHLSVYRNIAYG 94
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 78.5 bits (192), Expect = 4e-17
Identities = 18/173 (10%), Positives = 45/173 (26%), Gaps = 16/173 (9%)
Query: 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPM 717
K+ I GE G GK+TL+ I+ + +TG +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP---ETKKRTGFRIITTEGKKKI 58
Query: 718 DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777
S ++ + + + + + A + ++D
Sbjct: 59 FSSKFFTSKKLV------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 778 DPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830
+ ++ + + V+ D P + + ++
Sbjct: 107 EI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 1266 KIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
KI I G G GKTTL + + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFR 48
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 58.8 bits (140), Expect = 1e-09
Identities = 26/304 (8%), Positives = 85/304 (27%), Gaps = 2/304 (0%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLS 367
+ ++G ++ + + L + K ++ + + L + S
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 368 QRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW 427
Y S + G V ++ +G +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 428 FHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDE 487
+ + I++F+ +I +V+ I + ++K + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 488 RLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLV 547
+ + K + ++ + + + N + + + + L
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 548 STAT--FGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL 605
+ + L A + +++ + P++ + +V F + A + L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
Query: 606 EAPE 609
++ +
Sbjct: 314 DSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 44/311 (14%), Positives = 88/311 (28%), Gaps = 9/311 (2%)
Query: 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFI------LVAESKAGFKYEGYLLAITLFLAK 361
+ IF + +IK PL + I + + + I LF+
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 362 ILESLSQR-QRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
I+ + ++Y + + Q + G I +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTK 480
IW + + IAL I+F T+AAL + +L K +
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 481 LMVAQDERLKACSEAFVNMKVLKLYA--WETHFKNAIEILRNVEYKWLSAVQLRKAYNGF 538
A E E + V+K +A + + ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAF 598
+ + GA ++ + + FV L L+ P+R + Q+ +
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 599 SRIVNFLEAPE 609
R+ ++
Sbjct: 312 DRVFQLIDEDY 322
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMD 718
+ + G V GK+TL A+ G T G T + SP+
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 719 SHQY--QETLERCSLIKDLELLPYGDNTEIGERGVNL 753
+ E + R S I G ++
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDG 104
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.7 bits (91), Expect = 8e-04
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
SKP E+ KVAI G GKSTL AIL +
Sbjct: 1 SKP-------EITDAIKVAIVGRPNVGKSTLFNAILNK 31
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1335 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.9 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.89 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.88 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.88 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.71 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.71 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.71 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.7 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.7 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.7 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.69 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.68 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.67 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.67 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.66 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.64 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.61 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.4 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.38 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.3 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.5 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.64 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.39 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.38 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.21 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.86 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.64 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.49 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.43 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.4 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.39 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.34 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.19 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.18 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.1 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.01 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.88 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.88 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.87 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.85 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.74 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.71 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.69 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.59 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.58 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.56 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.55 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.53 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.52 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.31 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.13 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.1 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.0 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.9 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.9 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.87 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.85 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.85 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.79 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.77 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.73 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.72 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.58 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.53 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.45 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.45 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.35 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.34 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.24 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.23 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.19 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.19 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.08 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.02 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.02 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.93 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.93 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.87 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.85 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.84 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.62 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.56 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.31 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.3 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.29 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.27 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.2 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.17 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.17 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.17 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.16 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.16 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.09 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.04 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.02 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.87 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.86 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.81 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.8 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.76 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.63 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.62 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.58 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.56 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.55 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.53 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.52 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.47 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.46 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.42 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.37 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.32 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.27 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.18 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.13 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.11 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.07 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.07 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.05 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.02 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.98 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.89 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.82 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.75 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.73 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.67 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.64 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.64 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.63 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.62 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.56 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.54 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.54 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.47 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.46 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.46 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.37 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.29 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.21 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.18 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.18 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.08 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.06 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.04 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.03 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.93 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.81 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.7 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.69 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.69 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.67 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.62 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.57 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.57 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.56 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.52 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.49 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.47 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.38 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.33 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.3 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.18 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 90.13 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.1 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.09 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.08 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.05 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.98 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.96 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.95 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.94 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.93 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.9 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.89 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.88 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.87 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.84 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.7 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.7 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.68 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.65 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.62 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.45 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.38 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.28 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.23 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.19 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.16 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.14 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.13 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.13 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.02 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.99 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.88 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.84 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.74 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.72 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.68 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.66 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.51 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.49 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.45 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.43 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.41 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.31 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.28 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.24 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.23 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.18 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.14 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.13 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.06 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.01 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.0 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.97 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.95 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 87.82 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 87.67 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.66 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.65 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.63 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.6 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.55 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.54 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.49 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.43 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.32 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 87.29 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 87.21 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.16 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.12 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.12 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.08 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.08 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.07 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.99 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.97 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.96 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.96 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.87 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.68 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.68 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.66 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.54 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.53 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.42 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.42 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 86.4 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.33 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.33 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.31 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.29 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.24 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.12 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.94 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.93 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.88 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.83 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.78 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.77 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.73 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.68 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.67 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.63 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.57 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.43 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 85.18 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.13 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.09 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.02 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.0 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.97 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.78 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.68 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.62 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 84.59 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.56 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.5 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.4 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.39 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.29 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.2 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.14 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 84.07 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.94 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.91 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.89 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.88 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.72 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.71 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 83.43 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.39 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.33 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.29 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.22 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.15 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 82.68 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 82.59 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.51 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.39 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.34 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.27 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.18 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.06 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.78 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 81.76 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.27 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 81.05 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 80.67 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.52 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.09 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=414.86 Aligned_cols=227 Identities=30% Similarity=0.503 Sum_probs=211.9
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 76419998569982699999950000268509929999867988789999998568989983799929------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g------------ 691 (1335)
.++.|+++|++|+|+.+. +++|+|+||+|++|++++|+|++|||||||+++|+|.++|.+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCCC-CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 788799998899959999-7606443899839989999889998099999999712786300015399875307888863
Q ss_pred -EEEEEECCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -3999915776888888898413999-99378999999813378884099999852268888779799999999999814
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 692 -~iayv~Q~pwi~~~TireNIlfg~~-~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~ 769 (1335)
.++||+|+|+++++||+|||.||.+ .++++..++++.+.+.++++.+|+|.+|.+|++|.+|||||||||+||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHH
Q ss_conf 99799982888888999899999999999739978999816888612379699994996988138379971545899999
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849 (1335)
Q Consensus 770 ~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~~eL~~~~~~f~~l~ 849 (1335)
+|+|++||||+|+||+++.+.+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998999837654479779999999-9998753888999968999998599999998999999889999986884999999
Q ss_pred HHH
Q ss_conf 983
Q 000713 850 SAH 852 (1335)
Q Consensus 850 ~~~ 852 (1335)
+.+
T Consensus 251 ~~Q 253 (255)
T d2hyda1 251 SIQ 253 (255)
T ss_dssp TTT
T ss_pred HHC
T ss_conf 974
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=411.97 Aligned_cols=224 Identities=27% Similarity=0.445 Sum_probs=209.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 19998569982699999950000268509929999867988789999998568989983799929-------------39
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g-------------~i 693 (1335)
.|+++|++|+|+++. +++|+|+||+|++|++++|+|++|||||||+++|+|.++|.+|+|.++| .+
T Consensus 1 eI~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTTS-CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 929999999908999-6037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99915776888888898413999-99378999999813378884099999852268888779799999999999814997
Q 000713 694 AYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~pwi~~~TireNIlfg~~-~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 772 (1335)
+||+|+|+++++||+|||.++.+ .+.+++.++.+.|.+.++++.+|.|..|.+|++|.+|||||||||+||||++.+|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
Q ss_conf 999828888889998999999999997399789998168886123796999949969881383799715-4589999998
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS-SKEFQELVSA 851 (1335)
Q Consensus 773 i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~~eL~~~-~~~f~~l~~~ 851 (1335)
|++||||||+||+.+.+.+++. +....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++ ++.|.++.+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999-999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 3
Q 000713 852 H 852 (1335)
Q Consensus 852 ~ 852 (1335)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=406.59 Aligned_cols=227 Identities=29% Similarity=0.466 Sum_probs=212.0
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 76419998569982699999950000268509929999867988789999998568989983799929------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g------------ 691 (1335)
..+.|+++|++|+|+... .++|+|+||+|++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCCC-CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 830799998899929999-7635332899859999999999998599999998621688846898788012111066542
Q ss_pred -EEEEEECCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -399991577688888889841399--99937899999981337888409999985226888877979999999999981
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 692 -~iayv~Q~pwi~~~TireNIlfg~--~~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly 768 (1335)
.++|++|+|+++++|+++|+.++. ..++++..++++.|.+.++++.+|.|.+|.+|++|.+|||||||||+||||++
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHH
Q ss_conf 49979998288888899989999999999973997899981688861237969999499698813837997154589999
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848 (1335)
Q Consensus 769 ~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~~eL~~~~~~f~~l 848 (1335)
.+|+|++||||+|+||+.+.+.+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 4998899516444589889999999-998752278899998879999859999999899999988999998689399999
Q ss_pred HHHH
Q ss_conf 9983
Q 000713 849 VSAH 852 (1335)
Q Consensus 849 ~~~~ 852 (1335)
.+.+
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=403.49 Aligned_cols=226 Identities=27% Similarity=0.428 Sum_probs=206.6
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 76419998569982699999950000268509929999867988789999998568989983799929------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g------------ 691 (1335)
.++.|+++|++|+|+..++.++|+|+||+|++|++++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred -EEEEEECCCCCCCCCHHHHHCCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -39999157768888888984139999--937899999981337888409999985226888877979999999999981
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGSPM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 692 -~iayv~Q~pwi~~~TireNIlfg~~~--~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly 768 (1335)
.++||+|+|+++++|++|||.+|... +..+..+..+.+.+...++.+|.|.+|.++++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHH
Q ss_conf 49979998288888899989999999999973--9978999816888612379699994996988138379971545899
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 769 ~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l--~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~~eL~~~~~~f~ 846 (1335)
++|+|++||||||+||+++...+++. +..+. .++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 68707871675765685368999999-99976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9999
Q 000713 847 ELVS 850 (1335)
Q Consensus 847 ~l~~ 850 (1335)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=396.42 Aligned_cols=220 Identities=36% Similarity=0.676 Sum_probs=203.3
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 41999856998269999995000026850992999986798878999999856898998379992939999157768888
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705 (1335)
Q Consensus 626 ~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~ 705 (1335)
..|.++|.+| + .+|+|+|+||+|++|++++|+||+|||||||+++|+|+++|.+|+|.++|+++|++|.||++++
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698--9---9767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 88898413999993789999998133788840999998522688887797999999999998149979998288888899
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 TireNIlfg~~~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~ 785 (1335)
|++|||.||..+++.+++++++.|.+..|+..+|.++.|.+|++|.+|||||||||+||||++++|+|++||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf 98999999999997399789998168886123796999949969881383799715458999999
Q 000713 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 786 ~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~~eL~~~~~~f~~l~~ 850 (1335)
.+.+.+++.++....+++|+|+|||+++.+..||+|++|++|+|++.|+++||++..++|...+.
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 99999999999886289999999252899985999999989999998789999605948999872
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=400.75 Aligned_cols=222 Identities=29% Similarity=0.519 Sum_probs=206.2
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEE
Q ss_conf 9998569982699999950000268509929999867988789999998568989983799929-------------399
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g-------------~ia 694 (1335)
|+++|++|+|+.+ +++|+|+||++++|++++|+||+|||||||+++|+|.++|.+|+|.++| +++
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9915776888888898413999--99378999999813378884099999852268888779799999999999814997
Q 000713 695 YVSQTAWIQTGSIRENILFGSP--MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 695 yv~Q~pwi~~~TireNIlfg~~--~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 772 (1335)
||+|+|+++++|++||+.++.. .+++...++++.+.+...+..+|+|.+|.+|++|.+|||||||||+||||++.+|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
Q ss_conf 99982888888999899999999999739978999816888612379699994996988138379971545899999983
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852 (1335)
Q Consensus 773 i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~~eL~~~~~~f~~l~~~~ 852 (1335)
|++||||+|+||+++.+.+.+ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++++.+
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 999658865569889999988-7888717998999978799998499999998999999999999986896999999998
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.5e-41 Score=311.83 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=171.9
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EE
Q ss_conf 4199985699826999999500002685099299998679887899999985689899837999293-----------99
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TA 694 (1335)
Q Consensus 626 ~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~-----------ia 694 (1335)
..|+++|++++|+. ..+|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|. ++
T Consensus 5 ~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 5 VEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred CEEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEE
T ss_conf 74999879999999---999813067887998999999999829999999975899987879991641354770001589
Q ss_pred EEECCCCCC-CCCHHHHHCCCCCC---CHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 991577688-88888984139999---937----8999999813378884099999852268888779799999999999
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~pwi~-~~TireNIlfg~~~---~~~----~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARA 766 (1335)
||+|+|-++ +.|++||+.|+... +++ +.+++++.+.|.. ....+...||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHH
T ss_conf 98003353422209999999998739999999999999998759855-----------6609954699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8149979998288888899989999999999973-9978999816888612-37969999499698813837997154
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 767 ly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL~~~~ 842 (1335)
+..+|++++|||||++||+.....+.+....-.. .|+|+|+|||+++... .||+|++|++|+|++.|+.+|+.++.
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 404998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-41 Score=313.75 Aligned_cols=201 Identities=25% Similarity=0.388 Sum_probs=170.5
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9998569982699999950000268509929999867988789999998568989983799929-----------39999
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g-----------~iayv 696 (1335)
|+++|++++|+. ..+|+|+||++++||+++|+||+|||||||+++|.|.++|++|+|.++| .++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 999999999899---99981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ECCCCCC-CCCHHHHHCCCCCCC---H----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1577688-888889841399999---3----7899999981337888409999985226888877979999999999981
Q 000713 697 SQTAWIQ-TGSIRENILFGSPMD---S----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~pwi~-~~TireNIlfg~~~~---~----~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly 768 (1335)
+|+|-++ +.|++||+.|+.... + ++..++++...+.... ..+..+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-----------~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHH
T ss_conf 33420264333788978999875998899999999999757886566-----------4896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 499799982888888999899999999999-739978999816888612-37969999499698813837997154
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~i~lLDdp~salD~~~~~~i~~~~i~~-~l~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL~~~~ 842 (1335)
.+|++++||||+++||+.+.+.+.+....- ...|+|+|+|||+++... .||+|++|++|+|++.|+.+|++++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCC
T ss_conf 3998899758887889889989999999998742987999948999999969999999799999980899997389
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.1e-41 Score=311.43 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=172.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 19998569982699999950000268509929999867988789999998568989983799929---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g--------------- 691 (1335)
.|+++|++++|+.. +..+|+|+||+|++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEEECCCCCC-CCCHHHHHCCCCCC---CH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -399991577688-88888984139999---93----7899999981337888409999985226888877979999999
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 -~iayv~Q~pwi~-~~TireNIlfg~~~---~~----~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~ 762 (1335)
+++||+|+|-++ +.|++|||.|+... ++ ++.+++++.+.|.... ..+...||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------NHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999998665917666-----------4895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999981499799982888888999899999999999-73997899981688861-2379699994996988138379971
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~-~l~~kTvilvTH~~~~l-~~~D~iivl~~G~i~~~G~~~eL~~ 840 (1335)
||||+..+|+++|+|||+++||+.+...+.+....- ...|+|+|+|||+++.+ ..||+|++|++|+|++.|+.+|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CC
Q ss_conf 54
Q 000713 841 SS 842 (1335)
Q Consensus 841 ~~ 842 (1335)
+.
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.9e-41 Score=310.46 Aligned_cols=203 Identities=25% Similarity=0.345 Sum_probs=170.5
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------------
Q ss_conf 419998569982699999950000268509929999867988789999998568989983799929--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g-------------- 691 (1335)
..|+++|++++|+. ..+++|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 ~~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 78 (240)
T d1g2912 2 AGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred CCEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCC
T ss_conf 81899869999899---999856066886998999999999809999999964878898989999998035664442453
Q ss_pred ---EEEEEECCCCCC-CCCHHHHHCCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ---399991577688-8888898413999---993----78999999813378884099999852268888779799999
Q 000713 692 ---KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 692 ---~iayv~Q~pwi~-~~TireNIlfg~~---~~~----~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqR 760 (1335)
.++||+|+|-++ +.|++||+.|+.. .+. ++.+++++.+.+.... ..+...||||||||
T Consensus 79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-----------~~~p~~LSGGqkQR 147 (240)
T d1g2912 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-----------NRKPRELSGGQRQR 147 (240)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-----------TCCGGGSCHHHHHH
T ss_pred CCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHH
T ss_conf 2255120022122231011667633068772999899999999999875996676-----------29933499999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHH
Q ss_conf 9999998149979998288888899989999999999973-9978999816888612-3796999949969881383799
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 761 i~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL 838 (1335)
++||||+..+|++++|||||++||+.+...+.+....-.. .|.|+|++||+++.+. .||+|++|++|+|++.|+.+|+
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999982699889825887656989998999999999863698899995999999996999999989999998599999
Q ss_pred HHCC
Q ss_conf 7154
Q 000713 839 LASS 842 (1335)
Q Consensus 839 ~~~~ 842 (1335)
+++.
T Consensus 228 ~~~P 231 (240)
T d1g2912 228 YDKP 231 (240)
T ss_dssp HHSC
T ss_pred HHCC
T ss_conf 8289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=8e-41 Score=310.00 Aligned_cols=200 Identities=28% Similarity=0.422 Sum_probs=170.7
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9998569982699999950000268509929999867988789999998568989983799929-----------39999
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g-----------~iayv 696 (1335)
|+++|++++|+. .+|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++| .++|+
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred ECCCCCC-CCCHHHHHCCCCC----CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 1577688-8888898413999----9937899999981337888409999985226888877979999999999981499
Q 000713 697 SQTAWIQ-TGSIRENILFGSP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 697 ~Q~pwi~-~~TireNIlfg~~----~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~ 771 (1335)
+|++-++ +.|++||+.|+.. -++++..++++...+... ...+..+||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHH-----------HHCCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 1211117466577888887764055389999999998256555-----------75895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 7999828888889998999999999997-39978999816888612-37969999499698813837997154
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 772 ~i~lLDdp~salD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL~~~~ 842 (1335)
+++||||||++||+++...+.+....-. ..++|+|++||+++... .||+|++|++|++++.|+.+|++++.
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 7144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-41 Score=310.61 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=169.5
Q ss_pred EEEEEEEEEECCCCCC-CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 9998569982699999-950000268509929999867988789999998568989983799929---------------
Q 000713 628 ISIKSASFSWEESSSK-PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 628 I~i~~~~f~w~~~~~~-~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g--------------- 691 (1335)
|+++|++++|+.+... .+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred -EEEEEECCCCCC-CCCHHHHHCCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -399991577688-8888898413999---993----7899999981337888409999985226888877979999999
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 -~iayv~Q~pwi~-~~TireNIlfg~~---~~~----~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~ 762 (1335)
+++||+|++-++ ..|++|||.|+.. .++ ++..+.++.+.|.+. .......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-----------~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-----------TSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-----------HHCCHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035-----------54894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998149979998288888899989999999999973-9978999816888612-379699994996988138379971
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL~~ 840 (1335)
||||+..+|+++++||||++||+.+...+++....-.. .|+|+|+|||+++.+. .||+|++|++|+|++.|+.+|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 5
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.8e-40 Score=302.06 Aligned_cols=211 Identities=26% Similarity=0.389 Sum_probs=174.0
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 199985699826999999500002685099299998679887899999985689899837999293--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~-------------- 692 (1335)
.|+++|++++|+. ..+|+|+||++++||+++|+||+|||||||+++|.|..+|++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------------EEEEECCCCCC-CCCHHHHHCCCC----CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf ------------99991577688-888889841399----9993----78999999813378884099999852268888
Q 000713 693 ------------TAYVSQTAWIQ-TGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 693 ------------iayv~Q~pwi~-~~TireNIlfg~----~~~~----~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~ 751 (1335)
++||+|+|-++ +.|+.||+.++. ..++ ++..++++.+.+.+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCEEEEEECCEEE
Q ss_conf 77979999999999981499799982888888999899999999999739978999816888612-37969999499698
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
+||||||||++||||+..+|+++++|||+++||+.+...+++....-..+|+|+|+|||+++.+. .||+|++|++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCC-HH-HHHHHH
Q ss_conf 813837997154-58-999999
Q 000713 831 RAAPYHQLLASS-KE-FQELVS 850 (1335)
Q Consensus 831 ~~G~~~eL~~~~-~~-f~~l~~ 850 (1335)
+.|+.+|++++. .. ..+++.
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHH
T ss_conf 9849999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-40 Score=308.10 Aligned_cols=201 Identities=27% Similarity=0.374 Sum_probs=161.5
Q ss_pred EEEEEEEEEECCCCC-CCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 999856998269999-9950000268509929999867988789999998568989983799929---------------
Q 000713 628 ISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 628 I~i~~~~f~w~~~~~-~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g--------------- 691 (1335)
|+++|++++|+.... ..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred --EEEEEECCCCCC-CCCHHHHHCCCCC------CC-HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --399991577688-8888898413999------99-3789999998133788840999998522688887797999999
Q 000713 692 --KTAYVSQTAWIQ-TGSIRENILFGSP------MD-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~iayv~Q~pwi~-~~TireNIlfg~~------~~-~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi 761 (1335)
.++||+|+|-++ +.|++||+.++.. ++ +++.+++.+...+ ..+++ ........+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~---~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEE---RFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCG---GGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHH---HHHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876----24234---553488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 99999814997999828888889998999999999997-399789998168886123796999949969881383
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 762 ~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~~ 835 (1335)
+||||+..+|+++++|||||+||+.++..+++....-. ..++|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-39 Score=297.34 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=167.0
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 199985699826999999500002685099299998679887899999985689899837999293--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~-------------- 692 (1335)
.++++|++.+|+. ..+|+|+||++++||+++++||||||||||+++|.|.++|++|+|.++|.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCC-CCCCHHHHHCCCCCC-----------------CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999157768-888888984139999-----------------9378999999813378884099999852268888779
Q 000713 693 TAYVSQTAWI-QTGSIRENILFGSPM-----------------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 iayv~Q~pwi-~~~TireNIlfg~~~-----------------~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LS 754 (1335)
++|++|+|-+ .+.|+.||+.+|... +++..+++.+ +.+.+ |.......+..+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~-----~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK---ILEFL-----KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHH---HHHHT-----TCGGGTTSBGGGSC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHH---HHHHC-----CCCHHCCCCHHHCC
T ss_conf 87257764247887423214301333034504566542135328999999999---98761-----96302059535699
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEEC
Q ss_conf 7999999999998149979998288888899989999999999973997899981688861-237969999499698813
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l-~~~D~iivl~~G~i~~~G 833 (1335)
||||||++||||+..+|++++||||+++||+...+.+++....-..+|+|++++||+++.+ ..||+|++|++|+|+..|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 18888999999997592723243976569999999999999999978998999947699999869999999699899996
Q ss_pred CHHHHHH
Q ss_conf 8379971
Q 000713 834 PYHQLLA 840 (1335)
Q Consensus 834 ~~~eL~~ 840 (1335)
+.+|+.+
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred CHHHHHH
T ss_conf 6899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.4e-39 Score=299.20 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=170.2
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 764199985699826999999500002685099299998679887899999985689899837999293-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~----------- 692 (1335)
++..++++|.+++|+. ..+|+|+||++++||+++++||||||||||+++|.|.++|.+|+|.++|.
T Consensus 3 sd~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CCEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 5607999618999899---8888302578889979999999998599999999678888803898424434466088888
Q ss_pred ---EEEEECCCCCC-CCCHHHHHCCCCCC--CHHHHHH-HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---99991577688-88888984139999--9378999-99981337888409999985226888877979999999999
Q 000713 693 ---TAYVSQTAWIQ-TGSIRENILFGSPM--DSHQYQE-TLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 693 ---iayv~Q~pwi~-~~TireNIlfg~~~--~~~~y~~-vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LAR 765 (1335)
++|+||++-++ +.|++||+.++... +.+..++ +.+...+...+.. .......+||||||||++|||
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-------RLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-------TTTSBSSSSCHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH-------HHHCCHHHCCHHHHHHHHHHH
T ss_conf 7423556765545776369999998887327888999999999987417688-------875854338999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 98149979998288888899989999999999973997899981688861-23796999949969881383799715
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 766 Aly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l-~~~D~iivl~~G~i~~~G~~~eL~~~ 841 (1335)
|+..+|++++||||+++||+....++++....-..+|+|++++||+++.+ ..||+|++|++|+|++.|+.+|+.++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 99829987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-38 Score=293.49 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=169.0
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------EE
Q ss_conf 419998569982699999950000268509929999867988789999998568989983799929------------39
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KT 693 (1335)
Q Consensus 626 ~~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g------------~i 693 (1335)
++|+++|.+.+|+. +.+|+|+||++++||.++++||+|||||||+++|.|.++|.+|+|.++| .+
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEEECCCCC-CCCCHHHHHCCCCC---CCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999157768-88888898413999---99378----99999981337888409999985226888877979999999999
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~pwi-~~~TireNIlfg~~---~~~~~----y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LAR 765 (1335)
+|+||++.+ .+.|++||+.|... .++.. .+++++.+.+. ....++..+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHCCHHHHHHHHHHH
T ss_conf 67500154687866778889899861799899999999999867978-----------8885045337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 981499799982888888999899999999999-739978999816888612-3796999949969881383799715
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 766 Aly~~~~i~lLDdp~salD~~~~~~i~~~~i~~-~l~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL~~~ 841 (1335)
|+..+|++++||||+++||+...+.+++ .+.. ..+|+|+|++||+++.+. .||+|++|++|+|+..|+++++.+.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9865999887337988979899999999-9999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.5e-37 Score=284.54 Aligned_cols=197 Identities=27% Similarity=0.411 Sum_probs=158.0
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9998569982699999950000268509929999867988789999998568989983799929-----------39999
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g-----------~iayv 696 (1335)
+++ ++...++. ..+ |+||+++ ++.++++||+|||||||+++|.|.++|++|+|.++| .++||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEE
T ss_conf 999-99999899----999-9999749-9799999799980999999997399989628999999988699899285225
Q ss_pred ECCCCCC-CCCHHHHHCCCCC-CCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 1577688-8888898413999-99378----9999998133788840999998522688887797999999999998149
Q 000713 697 SQTAWIQ-TGSIRENILFGSP-MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 697 ~Q~pwi~-~~TireNIlfg~~-~~~~~----y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~ 770 (1335)
+|++-++ +.|++||+.||.. +++.. .+++++.+.|. .....+...||||||||++||||+..+
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-----------~~~~~~~~~LSGG~kQRvaiAral~~~ 144 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-----------HLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-----------TTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 231443522015576665323367788999999999863837-----------566579444899998999998777516
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 979998288888899989999999999973-9978999816888612-37969999499698813837997154
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 771 ~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kTvilvTH~~~~l~-~~D~iivl~~G~i~~~G~~~eL~~~~ 842 (1335)
|++++||||+++||+++...+.+....-.. .+.|+|+|||+++.+. .||+|++|++|++++.|+.+|++++.
T Consensus 145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 77067528655588799999999999998743976999818999999969999999899999990699983299
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-34 Score=262.09 Aligned_cols=195 Identities=24% Similarity=0.397 Sum_probs=161.7
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 199985699826999999500002685099299998679887899999985689899837999293-------------9
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~-------------i 693 (1335)
.++++|++. ...|+|+||+|++||+++|+||||||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~-------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAE-------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECC-------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCC-------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 999987415-------71555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCC-CCCCCHHHHHCCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 99915776-8888888984139999--9378999999813378884099999852268888779799999999999814-
Q 000713 694 AYVSQTAW-IQTGSIRENILFGSPM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ- 769 (1335)
Q Consensus 694 ayv~Q~pw-i~~~TireNIlfg~~~--~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~- 769 (1335)
+|++|+.- .+..++.+++.++... ..++.+++++.+.+.. .++.+..+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2451213577442098876410014668999999998659876-----------76768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------99799982888888999899999999999-73997899981688861-23796999949969881383799715
Q 000713 770 ------DADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 770 ------~~~i~lLDdp~salD~~~~~~i~~~~i~~-~l~~kTvilvTH~~~~l-~~~D~iivl~~G~i~~~G~~~eL~~~ 841 (1335)
+|++++||||+++||+.....+.+ .+.. ..+|+|+|++||+++.+ ..||+|++|++|++++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~-~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDK-ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHH-HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 713389988999718777789899999999-9999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.2e-32 Score=248.61 Aligned_cols=182 Identities=24% Similarity=0.418 Sum_probs=143.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEEEC
Q ss_conf 19998569982699999950000268509929999867988789999998568989983799929--------3999915
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVSQ 698 (1335)
Q Consensus 627 ~I~i~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g--------~iayv~Q 698 (1335)
.|+++|++++|+ +++|+|+||++++|++++|+||||||||||+++|+|.++|.+|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHC-----CCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 77688-888889841-----399999378999999813378884099999852268888779799999999999814997
Q 000713 699 TAWIQ-TGSIRENIL-----FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 699 ~pwi~-~~TireNIl-----fg~~~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 772 (1335)
++.++ +-|++||+. +|...++++..+.++...+ ++ +.++..+||||||||++||||++.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------LD------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------CC------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------CC------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 135788828999999999754886379999999987488------56------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 999828888889998999999999997399789998168886123796999949
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 773 i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iivl~~ 826 (1335)
+++||||+++||+.+...+++....-..++.++|+.+|+ .+..||.+.+|..
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS--CCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC--HHHHCCHHHHEEE
T ss_conf 999868620169999999999999998679999999916--2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=7.2e-23 Score=179.42 Aligned_cols=305 Identities=9% Similarity=0.065 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999999960178743689999999999999999999999999999999999
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~sl~~~~~~~~~~~~g~riR 383 (1335)
..+.+|+.+++..++.++..++....|++++.+++..-.+.. ...-+.+++.+++..++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999999999999998744687-7899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997389555327998899999999999998899999-9999999999999999988977999999999999
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~l~~~Iy~K~L~ls~~~~~~~s~GeIvNlmsvD~~ri~~~~~~~-~~lw~~plqi~ial~lL~~~lG~s~l~gl~v~il 462 (1335)
..+...+|+|.++.+....+++++|++++.++.|++.+.+..... ..+....+.++.++++++..-...++..++.+++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999971279999846179999999999999999999999999999689868
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~l~~~~~~~q~~~m~~~D~Ri~~~sEiL~~IrvIKl~aWE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
...+.....++..+..++..+..++..+...|.++|++++|.+++|+.+.++..+..++..+...+.....+........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999--99999999983376448889999999999999999999999999999999999999863997
Q 000713 543 SPVLV--STATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1335)
Q Consensus 543 ~p~lv--~~~tF~~~~l~g~~Lta~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~FL~~~e 609 (1335)
...+. .+..++.+....+.+|+|.+++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.|+
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=1.1e-22 Score=177.95 Aligned_cols=306 Identities=17% Similarity=0.164 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-H---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999899999999999999999999999999999996017874-3---68--9999999999999999999999999999
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF-K---YE--GYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~---~~--g~~l~~~l~~~~~~~sl~~~~~~~~~~~ 377 (1335)
..+.||+.++...++.++..++..+.|++++.+++.+.+++.. . .. .+.++.++++..++..++.....+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999973895553279988999999999999988999-999999999999999999988977999999
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 378 ~g~riR~~l~~~Iy~K~L~ls~~~~~~~s~GeIvNlmsvD~~ri~~~~~-~~~~lw~~plqi~ial~lL~~~lG~s~l~g 456 (1335)
.+.+++..+...+|+|.++++....+++++|+++|.++.|++.+.+... .+...+...+.+++++++++..-...++..
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 167 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA 167 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999971279999846179999999999999999999999999999
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~il~~~~~~~l~~~~~~~q~~~m~~~D~Ri~~~sEiL~~IrvIKl~aWE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++...+.....++..+..++..+..++..+.+.|.++|+|+||.+++|+.+.++..+..++..+...+........
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99887777777641233320267789899999978788755970234676411100233022311110156776520000
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6898689999--999999999983376448889999999999999999999999999999999999999863997
Q 000713 537 GFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1335)
Q Consensus 537 ~~~~~~~p~l--v~~~tF~~~~l~g~~Lta~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~FL~~~e 609 (1335)
.........+ +....++.+....+.+++|.+++.+.++..+..|+..++..+..+.++++|.+||.++|++|+
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=5.7e-22 Score=172.90 Aligned_cols=308 Identities=12% Similarity=0.103 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC---CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999820235999999999999999999875766134-457---8765-03789999999999999999999999999
Q 000713 909 PYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAAN-VEN---PNVS-TLRLIVVYLLIGFVSTLFLMSRSLSSVVL 983 (1335)
Q Consensus 909 vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~s~~wl~w~-~~~---~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~~ 983 (1335)
.++.|++..++.. .+.+++.++..+......+.+... ++. .+.+ ...+..++.++.++..++.+++.+.....
T Consensus 6 rl~~~~~~~k~~l--~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (319)
T d3b60a2 6 RLWPTIAPFKAGL--IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWV 83 (319)
T ss_dssp HHHHHHGGGHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999--99999999999999999999999999874468778999999999999997645335466544343
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999987087541014680035878716866888334999999999999999999999999789999999
Q 000713 984 GIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSI 1063 (1335)
Q Consensus 984 ~~~as~~lh~~ll~~il~apmsFFD~tp~GrIlnRfS~D~~~iD~~lp~~~~~~~~~~~~~~~~i~vi~~~~p~~~~~~i 1063 (1335)
+.+...++++++++++++.|++|||.++.|++++|+++|++.++..+...+...+...+.+++.++++....|.+.++++
T Consensus 84 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l 163 (319)
T d3b60a2 84 SGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILV 163 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 10001100047777650101111023332211111212121000011111200112334456688888765200210256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999768999998700002589999998706388873061899999999988510461798999989999
Q 000713 1064 PVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLI 1143 (1335)
Q Consensus 1064 pl~~~~~~~~~~y~~tsrel~Rl~~~~rspi~~~f~Etl~G~~tIRAf~~~~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~ 1143 (1335)
...+++..+..++.+..+...+......+...++..|.+.|..+||+|+.|+.+.+++.+..+...+........+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
T d3b60a2 164 VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD 243 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 68999999887666687787898876445677887776248723531110102456666653135677888887777406
Q ss_pred HHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999799999999999998-745998768779999999999999999999999999997767999999841699999
Q 000713 1144 QRLETLSATVISSAAFCM-VLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEA 1218 (1335)
Q Consensus 1144 ~rl~~l~~~~~~~~a~~~-v~~~~~~~~~~~~Glalsyal~l~~~l~~~v~~~~~~e~~~~SvERi~~y~~~p~E~ 1218 (1335)
...+++..+......... .....|.+++|.+...+.|...+...+..+...+.++.+.++|.||+.|+.|.|+|+
T Consensus 244 ~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 244 PIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=1.1e-21 Score=170.83 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCC---HHHH-----HHHHHHHHHHHHHHHH
Q ss_conf 1789999982023599999999999999999987576613445----78765---0378-----9999999999999999
Q 000713 907 LKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVE----NPNVS---TLRL-----IVVYLLIGFVSTLFLM 974 (1335)
Q Consensus 907 ~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~s~~wl~w~~~----~~~~~---~~~~-----~~vy~~l~~~~~~~~~ 974 (1335)
.+.++.|++..+.... ..+++.++..+......+.+++..+ +.... .... ...+.++.+...++.+
T Consensus 2 lKrl~~~~k~~k~~~~--~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIF--ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEF 79 (323)
T ss_dssp HHHHHHHHGGGHHHHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999--99999999999999999999999999862677421556899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987087541014680035878716866888334999999999999999999999999
Q 000713 975 SRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVV 1054 (1335)
Q Consensus 975 ~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFD~tp~GrIlnRfS~D~~~iD~~lp~~~~~~~~~~~~~~~~i~vi~~~ 1054 (1335)
.+.+.....+.+...++++++++++++.|++|||.+++|+++||+++|++.++..+...+...+...+.++..++++...
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998556778888766540233210001222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 78999999999999999999999768999998700002589999998706388873061899999999988510461798
Q 000713 1055 TWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFH 1134 (1335)
Q Consensus 1055 ~p~~~~~~ipl~~~~~~~~~~y~~tsrel~Rl~~~~rspi~~~f~Etl~G~~tIRAf~~~~~f~~~~~~~ld~~~~~~~~ 1134 (1335)
.|.+.++.++..+++..+..++.+..++..+......+...+++.|+++|..+||+|+.|+++.+++.+..+...+....
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998999999979999999999999-87459987687799999999999999999999999999977679999998416
Q 000713 1135 SFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMH 1213 (1335)
Q Consensus 1135 ~~~~~~Wl~~rl~~l~~~~~~~~a~~-~v~~~~~~~~~~~~Glalsyal~l~~~l~~~v~~~~~~e~~~~SvERi~~y~~ 1213 (1335)
......+.....+++..+.......+ ......|.+++|.+...++|...+...+..+...+.++...+.|.||+.|+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 9999
Q 000713 1214 VPSE 1217 (1335)
Q Consensus 1214 ~p~E 1217 (1335)
.|+|
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.9e-24 Score=190.97 Aligned_cols=92 Identities=32% Similarity=0.630 Sum_probs=86.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC------CCCC
Q ss_conf 5999988998379998842261278628759999958998689999999403489987599979415876------8993
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD------EPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~------~~~~ 1309 (1335)
+|+|+||+|+|+++.++||+||||+|++||+|||||++|||||||+.+|.|+++|++|+|.|||.||+.. +.++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EEECCCCCCCCCHHHHHH
Q ss_conf 560544323343786488
Q 000713 1310 LMKREGSLFGQLVKEYWS 1327 (1335)
Q Consensus 1310 LV~Qep~LFsgTIre~~~ 1327 (1335)
.|+|+|.||+|||+||-.
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~ 98 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNIS 98 (241)
T ss_dssp EECSSCCCTTSBHHHHHC
T ss_pred EEECCCCCCCCCCCCCCC
T ss_conf 982446557840003522
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=8.6e-24 Score=186.15 Aligned_cols=96 Identities=29% Similarity=0.510 Sum_probs=89.8
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC------C
Q ss_conf 9641599998899837999884226127862875999995899868999999940348998759997941587------6
Q 000713 1232 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------D 1305 (1335)
Q Consensus 1232 P~~G~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~------~ 1305 (1335)
+.+|.|+|+||+|+|+++.++||+||||+|++||++||||++|||||||+.+|.|+++|++|+|.|||.|++. +
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCCEEECCCCCCCCCHHHHHH
Q ss_conf 8993560544323343786488
Q 000713 1306 EPMELMKREGSLFGQLVKEYWS 1327 (1335)
Q Consensus 1306 ~~~~LV~Qep~LFsgTIre~~~ 1327 (1335)
..++.|+|+|.||+|||+||-.
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~ 113 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENIL 113 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHG
T ss_pred HEEEEEECCCCCCCCCHHHHHH
T ss_conf 4145651015689987999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.9e-23 Score=183.61 Aligned_cols=97 Identities=30% Similarity=0.499 Sum_probs=87.5
Q ss_pred CCCCCEEEEEEEEEEECCC-CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC----
Q ss_conf 9964159999889983799-98842261278628759999958998689999999403489987599979415876----
Q 000713 1231 WPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD---- 1305 (1335)
Q Consensus 1231 WP~~G~I~f~nv~~rYr~~-~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~---- 1305 (1335)
++.+|.|+|+||+++|+.. ..+||+||||+|++||++||||++|||||||+.+|.|+++|++|+|.|||.||+..
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred --CCCCEEECCCCCCCCCHHHHHH
Q ss_conf --8993560544323343786488
Q 000713 1306 --EPMELMKREGSLFGQLVKEYWS 1327 (1335)
Q Consensus 1306 --~~~~LV~Qep~LFsgTIre~~~ 1327 (1335)
..++.|+|+|.+|++||+||-.
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~ 109 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIA 109 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 887765404565002763465545
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.88 E-value=8.4e-23 Score=178.93 Aligned_cols=89 Identities=20% Similarity=0.421 Sum_probs=82.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC------CCCCCE
Q ss_conf 99998899837999884226127862875999995899868999999940348998759997941587------689935
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~------~~~~~L 1310 (1335)
|+++||+|+|..+ ++||+||||+|++||++||||++|||||||+.+|.|+++|++|+|.|||.|++. +..+++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred EECCCCCCCCCHHHHH
Q ss_conf 6054432334378648
Q 000713 1311 MKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1311 V~Qep~LFsgTIre~~ 1326 (1335)
|+|+|.||++||+||-
T Consensus 81 v~Q~~~lf~~ti~eNi 96 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENL 96 (242)
T ss_dssp ECCSSCCCCEEHHHHT
T ss_pred ECCCCCCCCCCHHHHE
T ss_conf 7566545785345430
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=1e-22 Score=178.30 Aligned_cols=95 Identities=24% Similarity=0.446 Sum_probs=88.3
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC------C
Q ss_conf 6415999988998379998842261278628759999958998689999999403489987599979415876------8
Q 000713 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD------E 1306 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~------~ 1306 (1335)
..|+|+|+||+++|..+.+++|+||||+|++||++||||++|||||||+.+|.++++|++|+|.|||.|++.. .
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCCEEECCCCCCCCCHHHHHH
Q ss_conf 993560544323343786488
Q 000713 1307 PMELMKREGSLFGQLVKEYWS 1327 (1335)
Q Consensus 1307 ~~~LV~Qep~LFsgTIre~~~ 1327 (1335)
.++.++|+|.||++|+++|..
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~ 110 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIA 110 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHH
T ss_conf 687995025447862024332
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.71 E-value=7.1e-18 Score=143.09 Aligned_cols=93 Identities=20% Similarity=0.395 Sum_probs=84.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC---------CC
Q ss_conf 599998899837999884226127862875999995899868999999940348998759997941587---------68
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DE 1306 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~---------~~ 1306 (1335)
.|+++|++.+|+.+.-.+|+||||+|++||.+||+|++|||||||+..+.++..|++|+|.+||.|++. ++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCCEEECCCCCCC-CCHHHHHHH
Q ss_conf 9935605443233-437864885
Q 000713 1307 PMELMKREGSLFG-QLVKEYWSH 1328 (1335)
Q Consensus 1307 ~~~LV~Qep~LFs-gTIre~~~~ 1328 (1335)
.++.|+|+|.||. -||+||..-
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~ 105 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAF 105 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHG
T ss_pred CCEEEECCCCCCCCCCHHHHHHH
T ss_conf 51477304334666657777665
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=1.8e-17 Score=140.13 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=82.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC----CCCCCEE
Q ss_conf 599998899837999884226127862875999995899868999999940348998759997941587----6899356
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----DEPMELM 1311 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~----~~~~~LV 1311 (1335)
.|+++|++.+|.. -.||+||||+|++||.+||+|++|||||||+..+.+++.|++|+|.+||.|++. ++.++.|
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEE
T ss_conf 4999879999999--99981306788799899999999982999999997589998787999164135477000158998
Q ss_pred ECCCCCC-CCCHHHHHH
Q ss_conf 0544323-343786488
Q 000713 1312 KREGSLF-GQLVKEYWS 1327 (1335)
Q Consensus 1312 ~Qep~LF-sgTIre~~~ 1327 (1335)
+|+|.|| .-||+||-.
T Consensus 84 ~Q~~~l~~~ltv~enl~ 100 (239)
T d1v43a3 84 FQSYAVWPHMTVYENIA 100 (239)
T ss_dssp EC------CCCHHHHHH
T ss_pred EECHHHCCCCHHHHHHH
T ss_conf 00335342220999999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.71 E-value=2.6e-17 Score=139.06 Aligned_cols=91 Identities=23% Similarity=0.348 Sum_probs=81.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC----------C
Q ss_conf 599998899837999884226127862875999995899868999999940348998759997941587----------6
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----------D 1305 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~----------~ 1305 (1335)
.|+++|++.+|.. -.+|+||||+|++||.+||+|++|||||||+.++.++.+|++|+|.+||.|+.. +
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCCEEECCCCCCC-CCHHHHHHH
Q ss_conf 89935605443233-437864885
Q 000713 1306 EPMELMKREGSLFG-QLVKEYWSH 1328 (1335)
Q Consensus 1306 ~~~~LV~Qep~LFs-gTIre~~~~ 1328 (1335)
..+++|+|+|.||. -||+||..-
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~ 104 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAF 104 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHH
T ss_conf 551200221222310116676330
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.70 E-value=2.4e-17 Score=139.30 Aligned_cols=88 Identities=28% Similarity=0.408 Sum_probs=81.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC----CCCCEEE
Q ss_conf 999988998379998842261278628759999958998689999999403489987599979415876----8993560
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD----EPMELMK 1312 (1335)
Q Consensus 1237 I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~----~~~~LV~ 1312 (1335)
|+++|++.+|.. .+|+||||+|++||.+||+|++|||||||+.+|.++..|++|+|.+||.||+.. +.++.|+
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEEC
T ss_conf 899989999499---78843378987998999998999829999999964768887889995673465216574056151
Q ss_pred CCCCCC-CCCHHHHHH
Q ss_conf 544323-343786488
Q 000713 1313 REGSLF-GQLVKEYWS 1327 (1335)
Q Consensus 1313 Qep~LF-sgTIre~~~ 1327 (1335)
|+|.|| .-||+||-.
T Consensus 79 Q~~~l~~~~tV~enl~ 94 (229)
T d3d31a2 79 QNYSLFPHMNVKKNLE 94 (229)
T ss_dssp TTCCCCTTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 2111174665778888
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=1.8e-17 Score=140.10 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=82.2
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC---------
Q ss_conf 999988998379998--842261278628759999958998689999999403489987599979415876---------
Q 000713 1237 VDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD--------- 1305 (1335)
Q Consensus 1237 I~f~nv~~rYr~~~p--~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~--------- 1305 (1335)
|+++|++.+|+.+.. .+|+|+||+|++||.+||+|++|||||||+..+.++.+|++|+|.+||.||...
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred -CCCCEEECCCCCC-CCCHHHHHHH
Q ss_conf -8993560544323-3437864885
Q 000713 1306 -EPMELMKREGSLF-GQLVKEYWSH 1328 (1335)
Q Consensus 1306 -~~~~LV~Qep~LF-sgTIre~~~~ 1328 (1335)
..++.|+|+|.|| +-||+||-..
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~ 106 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVEL 106 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHH
T ss_conf 5557788041241768668887757
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.6e-17 Score=138.95 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=80.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC----CCCCCEEE
Q ss_conf 99998899837999884226127862875999995899868999999940348998759997941587----68993560
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----DEPMELMK 1312 (1335)
Q Consensus 1237 I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~----~~~~~LV~ 1312 (1335)
|+++|++.+|.. ..+|+||||+|++||.+||+|++|||||||++.+.++..|++|+|.+||.||+. ++.++.|+
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEEC
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864443222343
Q ss_pred CCCCCC-CCCHHHHHH
Q ss_conf 544323-343786488
Q 000713 1313 REGSLF-GQLVKEYWS 1327 (1335)
Q Consensus 1313 Qep~LF-sgTIre~~~ 1327 (1335)
|+|.|| .-|++||-.
T Consensus 79 Q~~~l~~~~tv~eni~ 94 (232)
T d2awna2 79 QSYALYPHLSVAENMS 94 (232)
T ss_dssp SSCCC-----------
T ss_pred CCCCCCCCHHHHHHHH
T ss_conf 3420264333788978
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=4.3e-17 Score=137.40 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=81.5
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC---------
Q ss_conf 999988998379998--842261278628759999958998689999999403489987599979415876---------
Q 000713 1237 VDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD--------- 1305 (1335)
Q Consensus 1237 I~f~nv~~rYr~~~p--~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~--------- 1305 (1335)
|+++|++..|..+.. .||+||||+|++||.+||+|++|||||||+..+.++.+|++|+|.+||.|+...
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCCEEECCCCCCC-CCHHHHHH
Q ss_conf 89935605443233-43786488
Q 000713 1306 EPMELMKREGSLFG-QLVKEYWS 1327 (1335)
Q Consensus 1306 ~~~~LV~Qep~LFs-gTIre~~~ 1327 (1335)
+.++.|+|+|.||. -||+||-.
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~ 104 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVA 104 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 16643022522279964999999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=6.6e-17 Score=136.07 Aligned_cols=89 Identities=31% Similarity=0.463 Sum_probs=79.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC----------
Q ss_conf 5999988998379998842261278628759999958998689999999403489987599979415876----------
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD---------- 1305 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~---------- 1305 (1335)
.|+++|++.+|.. ..||+||||+|++||.+||+|++|||||||+.+|.++++|++|+|.+||.||...
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred ---------CCCCEEECCCCCCC-CCHHHHH
Q ss_conf ---------89935605443233-4378648
Q 000713 1306 ---------EPMELMKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1306 ---------~~~~LV~Qep~LFs-gTIre~~ 1326 (1335)
..++.|+|+|.||. -||.|+-
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env 110 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENV 110 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHH
T ss_conf 1767999745448998332314110102136
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1.1e-16 Score=134.55 Aligned_cols=90 Identities=32% Similarity=0.449 Sum_probs=82.2
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC-----CCCCC
Q ss_conf 1599998899837999884226127862875999995899868999999940348998759997941587-----68993
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPME 1309 (1335)
Q Consensus 1235 G~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~-----~~~~~ 1309 (1335)
|.|+++|++.+|.. ..||+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.+||.|+.. +..++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468398872186
Q ss_pred EEECCCCCCC-CCHHHHH
Q ss_conf 5605443233-4378648
Q 000713 1310 LMKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1310 LV~Qep~LFs-gTIre~~ 1326 (1335)
.+||++.+|. -|++|+.
T Consensus 79 ~vpq~~~~~~~ltv~e~l 96 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYL 96 (238)
T ss_dssp EECTTCCCCTTSBHHHHH
T ss_pred EEEECCCCCCCCCHHHHH
T ss_conf 750015468786677888
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=8.6e-18 Score=142.49 Aligned_cols=83 Identities=28% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCCEEEC
Q ss_conf 41599998899837999884226127862875999995899868999999940348998759997941587689935605
Q 000713 1234 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313 (1335)
Q Consensus 1234 ~G~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~~~~~LV~Q 1313 (1335)
.+.|+|+|+++.+ .|||+||||+|++||++||||++|||||||+.+|.++++|++|+|.+|| +++.++|
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------~i~~v~Q 104 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------RVSFCSQ 104 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------CEEEECS
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------EEEEEEC
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------9999816
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 44323343786488
Q 000713 1314 EGSLFGQLVKEYWS 1327 (1335)
Q Consensus 1314 ep~LFsgTIre~~~ 1327 (1335)
+|.+|.+||+||..
T Consensus 105 ~~~l~~~tv~eni~ 118 (281)
T d1r0wa_ 105 FSWIMPGTIKENII 118 (281)
T ss_dssp SCCCCSEEHHHHHT
T ss_pred CCCCCCCEEECCCC
T ss_conf 43026760321420
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.66 E-value=2.1e-16 Score=132.37 Aligned_cols=92 Identities=24% Similarity=0.394 Sum_probs=81.5
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC-------C
Q ss_conf 159999889983799988422612786287599999589986899999994034899875999794158768-------9
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE-------P 1307 (1335)
Q Consensus 1235 G~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~~-------~ 1307 (1335)
--++++|++.+|.. -.||+||||+|++||-+||+|++|||||||++++.+++.|++|+|.+||.|+.... .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CCEEECCCCCCCC-CHHHHHHH
Q ss_conf 9356054432334-37864885
Q 000713 1308 MELMKREGSLFGQ-LVKEYWSH 1328 (1335)
Q Consensus 1308 ~~LV~Qep~LFsg-TIre~~~~ 1328 (1335)
++.+||++.+|.. |++||-..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~ 104 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMM 104 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHG
T ss_pred CCCCCCCCCCCCCCCHHHHHHH
T ss_conf 3556765545776369999998
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=2.9e-16 Score=131.37 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=80.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC-------CC
Q ss_conf 59999889983799988422612786287599999589986899999994034899875999794158768-------99
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE-------PM 1308 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~~-------~~ 1308 (1335)
-++++|++.+|.. . .||+||||++++||.+||+|++|||||||++++.+++.|++|+|.+||.|+.... .+
T Consensus 4 iL~v~nlsk~yg~-~-~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE-F-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT-E-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC-E-EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799-6-8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred CEEECCCCCC-CCCHHHHHH
Q ss_conf 3560544323-343786488
Q 000713 1309 ELMKREGSLF-GQLVKEYWS 1327 (1335)
Q Consensus 1309 ~LV~Qep~LF-sgTIre~~~ 1327 (1335)
+.++|+|.+| +-||+||-.
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~ 101 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLL 101 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEE
T ss_conf 72577642478874232143
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.61 E-value=1.6e-15 Score=125.94 Aligned_cols=90 Identities=28% Similarity=0.411 Sum_probs=80.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC-CCCCEEECC
Q ss_conf 5999988998379998842261278628759999958998689999999403489987599979415876-899356054
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD-EPMELMKRE 1314 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~-~~~~LV~Qe 1314 (1335)
.||++|++++|. . +||+|+||+|++||.+||+|++|||||||+.++.+++.|++|+|.+||.++... .....+||+
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 78 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEEC
T ss_conf 599998999939--9-2884208898599899999999971999999996620567788999989626736708999501
Q ss_pred CCCCC-CCHHHHHHH
Q ss_conf 43233-437864885
Q 000713 1315 GSLFG-QLVKEYWSH 1328 (1335)
Q Consensus 1315 p~LFs-gTIre~~~~ 1328 (1335)
+.++. -|++|+...
T Consensus 79 ~~~~~~~t~~~~l~~ 93 (200)
T d1sgwa_ 79 IIVPRKISVEDYLKA 93 (200)
T ss_dssp CCCCTTSBHHHHHHH
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 357888289999999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.40 E-value=3.7e-13 Score=108.77 Aligned_cols=85 Identities=16% Similarity=0.285 Sum_probs=70.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC----CCCCEEE
Q ss_conf 999988998379998842261278628759999958998689999999403489987599979415876----8993560
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD----EPMELMK 1312 (1335)
Q Consensus 1237 I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~----~~~~LV~ 1312 (1335)
+++ ++.-+|.. ..+ ||||+++ +|.+||+|++|||||||+..+.++.+|++|+|.+||.|+... +.++.|+
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~ 76 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEEC
T ss_conf 999-99999899---999-9999749-97999997999809999999973999896289999999886998992852252
Q ss_pred CCCCCCC-CCHHHHHH
Q ss_conf 5443233-43786488
Q 000713 1313 REGSLFG-QLVKEYWS 1327 (1335)
Q Consensus 1313 Qep~LFs-gTIre~~~ 1327 (1335)
|+|.||. -||+||-.
T Consensus 77 Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 77 QDYALFPHLSVYRNIA 92 (240)
T ss_dssp SSCCCCTTSCHHHHHH
T ss_pred CCHHHCCCCHHHHHHH
T ss_conf 3144352201557666
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.38 E-value=3.3e-14 Score=116.44 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE--EEEECC-----------CCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 999986798878999999856898998379992939--999157-----------7688888889841399999378999
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--AYVSQT-----------AWIQTGSIRENILFGSPMDSHQYQE 724 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~i--ayv~Q~-----------pwi~~~TireNIlfg~~~~~~~y~~ 724 (1335)
+++|+||+|||||||+++|+|++++..|.+...+.. .+-.|. +.....+..++..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CC
Q ss_conf 9998133788840999998522688887797999999999998149979998288888899989999999999973--99
Q 000713 725 TLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SG 802 (1335)
Q Consensus 725 vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l--~~ 802 (1335)
..+......+++|+++|.+++++...+|+++++|||....+. .....+ .+...+ .+
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~-~l~~~l~~~~ 130 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRD-LVRQIMHDPN 130 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHH-HHHHHHTCTT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHH-HHHHHHCCCC
T ss_conf -------------------303762566532013789999997409974230277731004--579999-9998750579
Q ss_pred CEEEEECCCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 78999816888612379699994996988138
Q 000713 803 KVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 803 kTvilvTH~~~~l~~~D~iivl~~G~i~~~G~ 834 (1335)
+|+++++|+....+.+|++..+++|++.+-++
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.9e-12 Score=102.32 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=71.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCC------CC
Q ss_conf 599998899837999884226127862875999995899868999999940348998759997941587689------93
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEP------ME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rYr~~~p~VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~~~~------~~ 1309 (1335)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+.+|.++. |.+|+|.++|.|+....+ .+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCC-CCCCCHHHHHH
Q ss_conf 5605443-23343786488
Q 000713 1310 LMKREGS-LFGQLVKEYWS 1327 (1335)
Q Consensus 1310 LV~Qep~-LFsgTIre~~~ 1327 (1335)
.++|+.. .|..++.++-.
T Consensus 76 ~~~~~~~~~~~~~v~~~~~ 94 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLT 94 (231)
T ss_dssp EECSCCCCCSSCBHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHH
T ss_conf 4512135774420988764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=2.9e-07 Score=65.94 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE--E
Q ss_conf 87797999999999998----14997999828888889998999999999997399789998168886123796999--9
Q 000713 751 VNLSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL--M 824 (1335)
Q Consensus 751 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~iiv--l 824 (1335)
..+|+|||+...++... ...+.+++.|||-++||+...+.+.+ .+....++.-+|++||...++..+|+++. |
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 499
Q 000713 825 SDG 827 (1335)
Q Consensus 825 ~~G 827 (1335)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=1.4e-06 Score=60.99 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 87797999999999998----149979998288888899989999999999973-997899981688861237969999
Q 000713 751 VNLSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 751 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kTvilvTH~~~~l~~~D~iivl 824 (1335)
..+|||||.+++||-.+ +.++++++||||.++||+.....+.+. +.... .+.-+|++||+.+++..||.++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.64 E-value=1.1e-05 Score=54.41 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=35.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC
Q ss_conf 5999995899868999999940348998759997941587
Q 000713 1265 HKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY 1304 (1335)
Q Consensus 1265 eKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDGvDI~~ 1304 (1335)
-||+|+|++|||||||+..+.+.+.+..|.+.++|.+...
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~ 40 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPE 40 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHH
T ss_conf 9899998999389999999981488886469987713288
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.0032 Score=36.51 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=73.7
Q ss_pred CCEEEEEEEEEECC----CCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCC-CCCEEEECCE
Q ss_conf 41999856998269----99999500002685099299998679887899999985--------68989-9837999293
Q 000713 626 RAISIKSASFSWEE----SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL--------GEVPH-TQGTIQVYGK 692 (1335)
Q Consensus 626 ~~I~i~~~~f~w~~----~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~il--------Ge~~~-~~G~v~v~g~ 692 (1335)
..++++++-- |- ..++++=+|+++. +.+....|+|||.|||||+|+.+. |-.-| .+.++....+
T Consensus 10 ~~l~i~~~rH--Plle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~ 86 (234)
T d1wb9a2 10 PGIRITEGRH--PVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR 86 (234)
T ss_dssp SCEEEEEECC--TTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE
T ss_pred CCEEEEEEEC--CEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCHH
T ss_conf 9689997378--7797446998264057988-995399995467313689999879999998729767417666134420
Q ss_pred EEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99991577688888889841399999378999999813378884099999852268888779799999999999814997
Q 000713 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 693 iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 772 (1335)
+- ......|++.-|... =..+-+|++-.---..+..
T Consensus 87 I~--------~~~~~~d~~~~~~S~------------------------------------F~~E~~~~~~il~~~~~~s 122 (234)
T d1wb9a2 87 IF--------TRVGAADDLASGRST------------------------------------FMVEMTETANILHNATEYS 122 (234)
T ss_dssp EE--------EEEC-----------------------------------------------CHHHHHHHHHHHHHCCTTE
T ss_pred HE--------EEECCCCCCCCCHHH------------------------------------HHHHHHHHHHHHHHCCCCC
T ss_conf 23--------487467534365318------------------------------------9999999999997454660
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-CCC-CEEEEECCCCCC
Q ss_conf 999828888889998999999999997-399-789998168886
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEA-LSG-KVVLLVTHQVDF 814 (1335)
Q Consensus 773 i~lLDdp~salD~~~~~~i~~~~i~~~-l~~-kTvilvTH~~~~ 814 (1335)
++|+||++++-++..+..+....+..+ .++ ..++++||..+.
T Consensus 123 LvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 123 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 88532223587745666789876454320454428985246877
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.38 E-value=0.0032 Score=36.58 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=69.8
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCC-CCEEEECCEEEEEECCCCCCCCCHHHHHCCCC
Q ss_conf 500002685099299998679887899999985--------689899-83799929399991577688888889841399
Q 000713 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL--------GEVPHT-QGTIQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 645 ~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~il--------Ge~~~~-~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~ 715 (1335)
+=.|+.+ . ++...|+|||.+||||+|+.+. |-.-|. +.++.....+- ......|++.-|.
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~--------~~~~~~d~~~~~~ 95 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--------TRIGASDDLAGGK 95 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE--------EECCC------CC
T ss_pred ECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCEEE--------EEECCCCCCCCCC
T ss_conf 4555884--7-867999788734532345565899999852504613751994011699--------9987776023783
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99937899999981337888409999985226888877979999999999981499799982888888999899999999
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~ 795 (1335)
.. =..+-+|+.-.---..+..++|+||++.+-|+..+..+...+
T Consensus 96 St------------------------------------F~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~ai 139 (224)
T d1ewqa2 96 ST------------------------------------FMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAV 139 (224)
T ss_dssp SH------------------------------------HHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHH
T ss_pred CH------------------------------------HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHH
T ss_conf 07------------------------------------898678898775028977278554545686233200258888
Q ss_pred HHHHC-CCCEEEEECCCCCCCC
Q ss_conf 99973-9978999816888612
Q 000713 796 VMEAL-SGKVVLLVTHQVDFLP 816 (1335)
Q Consensus 796 i~~~l-~~kTvilvTH~~~~l~ 816 (1335)
+..+. ++.+.+++||..+...
T Consensus 140 le~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 140 AEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHCCCCEEEEEECHHHHH
T ss_conf 8888623761378652023332
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.004 Score=35.80 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=66.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 92999986798878999999856898998379992939999157768888888984139999937899999981337888
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDL 735 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~~dl 735 (1335)
|-.++++|++|+|||||++++.|.-.... +..| ++.++.+.......... .. +
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~~~-------~~----~ 53 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIV------------TDIA----GTTRDVLREHIHIDGMP-------LH----I 53 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCC------------CSST----TCCCSCEEEEEEETTEE-------EE----E
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEE------------ECCC----CCCCCEEEEEEECCCCE-------EE----E
T ss_conf 98999989999989999999968886675------------1246----64220476532026823-------54----1
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 40999998522688887797999999999998149979998288888899989999999999973997899981688861
Q 000713 736 ELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815 (1335)
Q Consensus 736 ~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l 815 (1335)
...| | + ...-...++..+..+...+.++|+++++-....-+.....+.+.+.+.....++.+++|-+..+..
T Consensus 54 ~d~~-g----~---~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~ 125 (161)
T d2gj8a1 54 IDTA-G----L---REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 125 (161)
T ss_dssp EECC-C----C---SCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred CCCC-C----C---CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf 3653-2----1---224652024789999999874133201102565420345554445554201410102046544433
Q ss_pred C
Q ss_conf 2
Q 000713 816 P 816 (1335)
Q Consensus 816 ~ 816 (1335)
+
T Consensus 126 ~ 126 (161)
T d2gj8a1 126 G 126 (161)
T ss_dssp C
T ss_pred H
T ss_conf 5
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.00074 Score=41.16 Aligned_cols=25 Identities=52% Similarity=0.620 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998679887899999985689
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+=.++|+|.+|+|||||+++++|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.00068 Score=41.42 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999867988789999998568989983
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G 685 (1335)
.++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.49 E-value=0.0037 Score=36.09 Aligned_cols=113 Identities=26% Similarity=0.279 Sum_probs=70.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 0992999986798878999999856898998379-992939999157768888888984139999937899999981337
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-QVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLI 732 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v-~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~ 732 (1335)
.++-++.++||+||||||.+.+++.+++....+| .+...+-|. .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~------~----------------------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD------I----------------------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC------C-----------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC------C-----------------------------
T ss_conf 41054898767877744779998666257874699962674345------6-----------------------------
Q ss_pred HHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8884099999852268-888779799999999999814997999828888889998999999999997399789998168
Q 000713 733 KDLELLPYGDNTEIGE-RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811 (1335)
Q Consensus 733 ~dl~~lp~Gd~T~IGe-~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~ 811 (1335)
++--++++.+ .+.+ ---+|..++-+|||+++..|.- |..+++..+ .....|..|+-.-|-
T Consensus 201 ------~~~~q~~v~~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa 261 (401)
T d1p9ra_ 201 ------DGIGQTQVNPRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHT 261 (401)
T ss_dssp ------SSSEEEECBGGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECC
T ss_pred ------CCCCEEEECCCCCCC------HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECC
T ss_conf ------788702655876779------9999999984138889845768---759999999----997249858998336
Q ss_pred CCCCCCCCE
Q ss_conf 886123796
Q 000713 812 VDFLPAFDS 820 (1335)
Q Consensus 812 ~~~l~~~D~ 820 (1335)
-+-....++
T Consensus 262 ~~a~~~~~R 270 (401)
T d1p9ra_ 262 NTAVGAVTR 270 (401)
T ss_dssp SSSHHHHHH
T ss_pred CCHHHHHHH
T ss_conf 766766543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.43 E-value=0.0011 Score=39.80 Aligned_cols=37 Identities=32% Similarity=0.708 Sum_probs=29.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5099299998679887899999985689899837999
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v 689 (1335)
++.|.-+.|+|++||||||+++++++++++..--+.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.40 E-value=0.001 Score=40.14 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++|+|++|+|||||++++.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.39 E-value=0.0011 Score=39.93 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++++|.+|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.34 E-value=0.0018 Score=38.30 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9929999867988789999998568989983799
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~ 688 (1335)
+|+..+++|++|.|||||+++++|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.19 E-value=0.03 Score=29.47 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=72.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 50992999986798878999999856898998379992939999157768888888984139999937899999981337
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLI 732 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~ 732 (1335)
+++|+++.|.|+.|||||++..-++-......+ .+.|++-+ .+ ...+.+..+....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----~~------------~~~~~~~~~~~~~- 78 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----ES------------RAQLLRNAYSWGM- 78 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----SC------------HHHHHHHHHTTSC-
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----CC------------HHHHHHHHHHCCC-
T ss_conf 869849999918999999999999999987232------44112126-----79------------9999999998299-
Q ss_pred HHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 88840-9999985226888877979999999999981-499799982888888---9998999999999997-3997899
Q 000713 733 KDLEL-LPYGDNTEIGERGVNLSGGQKQRIQLARALY-QDADIYLLDDPFSAV---DAHTASSLFNDYVMEA-LSGKVVL 806 (1335)
Q Consensus 733 ~dl~~-lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly-~~~~i~lLDdp~sal---D~~~~~~i~~~~i~~~-l~~kTvi 806 (1335)
|... ...|.............. +...-.+.+++. .++++.+.|...... +...-..........+ ..+.|++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 79 -DFEEMERQNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp -CHHHHHHTTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -CHHHHHHCCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -86998545861799730001017-9999999999984088533220431430489999999999999999998698399
Q ss_pred EECCCCC-----------CCCCCCEEEEEEC
Q ss_conf 9816888-----------6123796999949
Q 000713 807 LVTHQVD-----------FLPAFDSVLLMSD 826 (1335)
Q Consensus 807 lvTH~~~-----------~l~~~D~iivl~~ 826 (1335)
++.|.-. .-..+|-|+.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9985675125544577640464216999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.026 Score=29.92 Aligned_cols=144 Identities=14% Similarity=0.131 Sum_probs=64.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEEECCCCCCCCCHHHHHC-CCCCCCHHHHHHHHH
Q ss_conf 5099299998679887899999985689----89983799929399991577688888889841-399999378999999
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEV----PHTQGTIQVYGKTAYVSQTAWIQTGSIRENIL-FGSPMDSHQYQETLE 727 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~----~~~~G~v~v~g~iayv~Q~pwi~~~TireNIl-fg~~~~~~~y~~vl~ 727 (1335)
+.+|+++.|+|+.|+|||+|+..++--+ +...+...-.+.+.|+.-+... ..+++.+. .+..++...+....+
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~--~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH--HHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 558958999928999899999999999976997211123578736898512349--999999999862368666531233
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHH-CC
Q ss_conf 81337888409999985226888877979999999999981499799982888888-----9998999999999997-39
Q 000713 728 RCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV-----DAHTASSLFNDYVMEA-LS 801 (1335)
Q Consensus 728 ~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~sal-----D~~~~~~i~~~~i~~~-l~ 801 (1335)
.+...+.-+. ...... ....-.+. ....+++++++|--.... |......++..+..-. ..
T Consensus 104 ------~~~~~~~~~~-----~~~~~~--~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 104 ------GLLIQPLIGS-----LPNIMA--PEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp ------HEEECCCTTS-----CCCTTS--HHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCEECCCCCC-----CCHHHH--HHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ------3232145674-----203578--99999988-752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCCC
Q ss_conf 97899981688
Q 000713 802 GKVVLLVTHQV 812 (1335)
Q Consensus 802 ~kTvilvTH~~ 812 (1335)
+.|++++.|.-
T Consensus 170 ~~~vi~v~H~~ 180 (274)
T d1nlfa_ 170 GCSIVFLHHAS 180 (274)
T ss_dssp CCEEEEEEEC-
T ss_pred CCCEEHHHHCC
T ss_conf 97540131005
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0026 Score=37.14 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++++|.+|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.01 E-value=0.012 Score=32.34 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 95000026850992999986798878999999856898998379992939999157
Q 000713 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT 699 (1335)
Q Consensus 644 ~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~ 699 (1335)
+.|++..--+.+|+++.|.|++|+|||+++.-++--+-...| .++.|++-+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~E 73 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAMLE 73 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEESS
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEC
T ss_conf 668887469789808999947999799999999972655336-----634576401
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0041 Score=35.73 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=24.4
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHH---HCC
Q ss_conf 268509929999867988789999998---568
Q 000713 650 SLEVRPGQKVAICGEVGSGKSTLLAAI---LGE 679 (1335)
Q Consensus 650 ~l~i~~G~~v~IvG~~GsGKStLl~~i---lGe 679 (1335)
++++..+.+++|+|+||||||+++.|| ||.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~~~lg~ 51 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 51 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 975899998999999999889999999998577
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0018 Score=38.39 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09929999867988789999998568989
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
.+.-.++|+|+.|+|||||+..+...+..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98328974389999899999999999975
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0028 Score=36.97 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 759999958998689999999403
Q 000713 1264 GHKIGIVGRTGSGKTTLRGALFRL 1287 (1335)
Q Consensus 1264 GeKVGIVGRTGSGKSTL~~aLfRl 1287 (1335)
|=||+++|++|+|||||+++|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.87 E-value=0.0026 Score=37.18 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
-++++|++|+|||||+++|.|+-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.85 E-value=0.0055 Score=34.81 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++.++|++||||||+.+.+..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.0047 Score=35.33 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 875999995899868999999940348998759
Q 000713 1263 GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295 (1335)
Q Consensus 1263 ~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I 1295 (1335)
.|+...++|.+|.|||||+++|..=.+...|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.74 E-value=0.0033 Score=36.45 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=7.1
Q ss_pred EEEEECCCEEEEECC
Q ss_conf 268509929999867
Q 000713 650 SLEVRPGQKVAICGE 664 (1335)
Q Consensus 650 ~l~i~~G~~v~IvG~ 664 (1335)
+..++.|..+.++.|
T Consensus 100 ~a~Lp~G~Rv~~v~~ 114 (323)
T d1g6oa_ 100 SSNLANGERVQIVLS 114 (323)
T ss_dssp EEECTTSCEEEEECT
T ss_pred EEEECCCEEEEEECC
T ss_conf 677268538998246
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.71 E-value=0.0018 Score=38.36 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
-|||+|+.++|||||++++.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.044 Score=28.30 Aligned_cols=43 Identities=30% Similarity=0.569 Sum_probs=27.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEECCEECCCCC
Q ss_conf 7599999589986899999994034------------899875999794158768
Q 000713 1264 GHKIGIVGRTGSGKTTLRGALFRLI------------EPARGKILVDGKLAEYDE 1306 (1335)
Q Consensus 1264 GeKVGIVGRTGSGKSTL~~aLfRl~------------e~~~G~I~IDGvDI~~~~ 1306 (1335)
+=||||+|++|+|||||+++|++-- .+..|.+.++|.++....
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d 62 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEEC
T ss_conf 8889999999999999999997787622422565433320012204992346523
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0044 Score=35.51 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
.|+++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0018 Score=38.33 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999986798878999999856898
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.-.++++|.+++|||||++++.|.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.56 E-value=0.0015 Score=38.88 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9929999867988789999998568989983799
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~ 688 (1335)
+|+.++++|++|.|||||+++++|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.55 E-value=0.0033 Score=36.42 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9299998679887899999985689899
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPHT 683 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~~~ 683 (1335)
|.+++|+||+||||+|+.+.+..+.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.53 E-value=0.0033 Score=36.47 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++++|..|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.52 E-value=0.0027 Score=37.10 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998679887899999985689
Q 000713 659 VAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
++++|..|+|||||++++.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.31 E-value=0.0062 Score=34.45 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++++|+.|+|||||++.++|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.13 E-value=0.0073 Score=33.94 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999867988789999998568
Q 000713 659 VAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe 679 (1335)
+||+|.+++|||||+++++|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0025 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 299998679887899999985689899837999
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v 689 (1335)
+.+.|+||+|+|||||++.+..++....+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 699998899971999999999999977997999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.006 Score=34.54 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 299998679887899999985689899837
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGT 686 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~~~G~ 686 (1335)
+.++|+|..|||||||+..++.++.....+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~ 31 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWR 31 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 099998099998999999999999867983
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.0057 Score=34.73 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998679887899999985689899
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHT 683 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~ 683 (1335)
.++|+|+.|||||||+..++.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.0085 Score=33.46 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 999986798878999999856898998379992939999157768
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi 702 (1335)
+++|.|++||||||+.+.|.-.+....... ..-.+..+++..|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~-~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY-RQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG-GGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC-CCCCEEEEECCCCC
T ss_conf 999989997879999999999964101345-78843999346532
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.009 Score=33.29 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9929999867988789999998568989
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
+|.++.|+||+|+||+||.+.++-+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0053 Score=34.97 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 999958998689999999403489
Q 000713 1267 IGIVGRTGSGKTTLRGALFRLIEP 1290 (1335)
Q Consensus 1267 VGIVGRTGSGKSTL~~aLfRl~e~ 1290 (1335)
++|+|..|||||||+..|.+-...
T Consensus 5 i~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999918999899999999999997
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.85 E-value=0.0072 Score=33.97 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0992999986798878999999856898
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
++.-.++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.79 E-value=0.013 Score=32.05 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99299998679887899999985689
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.|+++.+.|++||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.77 E-value=0.0074 Score=33.90 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999995899868999999940
Q 000713 1266 KIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLfR 1286 (1335)
+|+|||++|+|||||+++|.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999989999879999998529
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.73 E-value=0.017 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 509929999867988789999998568
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++|+++.|.|+.|||||++..-++-.
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 558879999858989889999999998
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.72 E-value=0.0092 Score=33.23 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
-+++|.|++|||||||.+.|.-.+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8999789887899999999999836
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0084 Score=33.51 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 9999867988789999998568989983799929399991577688
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~ 703 (1335)
+++|.|++||||||+.+.|...+....+ .-++..++++.+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~ 123 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLH 123 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEEC
T ss_conf 9999689999876899999999730468----99659995215689
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.53 E-value=0.017 Score=31.25 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCE
Q ss_conf 797999999999998149979998288888899989999999999973997899981688861-23796
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL-PAFDS 820 (1335)
Q Consensus 753 LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l-~~~D~ 820 (1335)
++..|.++ +-+++....-++|+==|+.+=-..+-..+.+.. ...++.++-+..-+++. +.+.+
T Consensus 142 ~~~~~~~~--l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~---~~~~~~i~tiEdPiE~~~~~~~q 205 (401)
T d1p9ra_ 142 MTAHNHDN--FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL---NSSERNILTVEDPIEFDIDGIGQ 205 (401)
T ss_dssp CCHHHHHH--HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH---CCTTSCEEEEESSCCSCCSSSEE
T ss_pred CCHHHHHH--HHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHH---CCCCCEEEEECCCCCCCCCCCCE
T ss_conf 35777899--999986410548987678777447799986662---57874699962674345678870
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.45 E-value=0.018 Score=31.15 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=19.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 14997999828888889998999999999997399789998168886
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 768 y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~ 814 (1335)
..+.|++++|-.- ..... ...+.+.+ ...+|-+++|-+..+.
T Consensus 133 ~~~~d~~l~~~~~-~~~~~-d~~l~~~l---~~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 133 FYEYDFFIIISAT-RFKKN-DIDIAKAI---SMMKKEFYFVRTKVDS 174 (400)
T ss_dssp GGGCSEEEEEESS-CCCHH-HHHHHHHH---HHTTCEEEEEECCHHH
T ss_pred HHCCEEEEEECCC-CCCHH-HHHHHHHH---HHCCCCEEEEEECCCC
T ss_conf 3226599996588-88788-99999999---9769987999708632
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.45 E-value=0.0078 Score=33.74 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999995899868999999940348998
Q 000713 1266 KIGIVGRTGSGKTTLRGALFRLIEPAR 1292 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLfRl~e~~~ 1292 (1335)
-+||+|..|||||||+..|.+-+...+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 999980999989999999999998679
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.39 E-value=0.016 Score=31.54 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++++|..|+|||||++.+.+.-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.044 Score=28.27 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.34 E-value=0.0096 Score=33.09 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=9.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 75999995899868999999940
Q 000713 1264 GHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1264 GeKVGIVGRTGSGKSTL~~aLfR 1286 (1335)
|.-|.|+|++|||||||+..|..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 74999989999999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.24 E-value=0.019 Score=30.94 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0992999986798878999999856898
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
|+|..++|+|+.||||||+.+.|.-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.19 E-value=0.0058 Score=34.66 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 8759999958998689999999403489987599
Q 000713 1263 GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKIL 1296 (1335)
Q Consensus 1263 ~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~ 1296 (1335)
.|.+..++|.+|.|||||+++|..=.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.19 E-value=0.014 Score=31.91 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+.++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.02 Score=30.80 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++|+|+.|+|||||++.+.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.02 E-value=0.021 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|+.|+|||||++.+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.02 E-value=0.021 Score=30.66 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++|+|+.|||||||+..++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.93 E-value=0.031 Score=29.39 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=10.4
Q ss_pred CEEEEECCCCCCCHHHHHHH
Q ss_conf 79998288888899989999
Q 000713 772 DIYLLDDPFSAVDAHTASSL 791 (1335)
Q Consensus 772 ~i~lLDdp~salD~~~~~~i 791 (1335)
-+.++.|+....+++.....
T Consensus 126 ~~v~vvd~~~~~~~~~~~~~ 145 (244)
T d1yrba1 126 LVVYISDPEILKKPNDYCFV 145 (244)
T ss_dssp EEEEEECGGGCCSHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHH
T ss_conf 58999636556675047669
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.93 E-value=0.021 Score=30.62 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+++++|+.|+|||||++.+.+.-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.01 Score=32.89 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=3.8
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999981499
Q 000713 760 RIQLARALYQDA 771 (1335)
Q Consensus 760 Ri~LARAly~~~ 771 (1335)
.+.+.+.+..++
T Consensus 124 ~~~~~~~~~~~~ 135 (189)
T d2i3ba1 124 FIQAVRQTLSTP 135 (189)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999985468
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.85 E-value=0.021 Score=30.64 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=7.8
Q ss_pred CCEEEEECCCC
Q ss_conf 97899981688
Q 000713 802 GKVVLLVTHQV 812 (1335)
Q Consensus 802 ~kTvilvTH~~ 812 (1335)
..++|+.||--
T Consensus 148 ~~~ivv~t~~D 158 (257)
T d1h65a_ 148 NKAIVALTHAQ 158 (257)
T ss_dssp GGEEEEEECCS
T ss_pred HCEEEEEECCC
T ss_conf 38899998864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.001 Score=40.10 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.0
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5000026850992999986798878999999856
Q 000713 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1335)
Q Consensus 645 ~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilG 678 (1335)
.+++.++++.+| +++|+|+|||||||++.||.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.81 E-value=0.021 Score=30.57 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCCH
Q ss_conf 8522688887797
Q 000713 743 NTEIGERGVNLSG 755 (1335)
Q Consensus 743 ~T~IGe~G~~LSG 755 (1335)
...||=.|..=||
T Consensus 22 ~~iIgI~G~~GSG 34 (198)
T d1rz3a_ 22 RLVLGIDGLSRSG 34 (198)
T ss_dssp SEEEEEEECTTSS
T ss_pred CEEEEEECCCCCC
T ss_conf 8899978988789
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.74 E-value=0.027 Score=29.80 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0992999986798878999999856898
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
++|..+.++|+.||||||+..++.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.62 E-value=0.03 Score=29.45 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCEEEEEE
Q ss_conf 8999899999999999739978999816888612--379699994
Q 000713 783 VDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP--AFDSVLLMS 825 (1335)
Q Consensus 783 lD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~--~~D~iivl~ 825 (1335)
.+......+.+....-...+...++..|....+. ..+.++.++
T Consensus 59 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~vI~L~ 103 (174)
T d1y63a_ 59 IEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLH 103 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSEEEEECSCCTTSCGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 079999999999985431103543548999999970686589997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.029 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099299998679887899999985689
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
..+.++.++|++||||||+.+.+...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.027 Score=29.75 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999867988789999998568989
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
.+.+.|+||+|+||+||.+.++.+.+.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 771999998999999999999970976
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.31 E-value=0.03 Score=29.47 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++|+|...||||||+++++|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.31 E-value=0.03 Score=29.52 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++|+|..+||||||+++|+|+--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.30 E-value=0.03 Score=29.47 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
..+++.|+|++||||||+.+.+..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.29 E-value=0.029 Score=29.54 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
.++|+|.+++|||||+.+|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.27 E-value=0.034 Score=29.05 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=20.6
Q ss_pred HHHHHHCCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 999998149979998-28888889998999999999997399789998168886
Q 000713 762 QLARALYQDADIYLL-DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 762 ~LARAly~~~~i~lL-Ddp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~ 814 (1335)
..++....++|++++ .|+........ +++.+.+ .. .++-+|+|-+..+.
T Consensus 72 ~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l-~~--~~~pviiv~NK~Dl 121 (171)
T d1mkya1 72 EVTLNMIREADLVLFVVDGKRGITKED-ESLADFL-RK--STVDTILVANKAEN 121 (171)
T ss_dssp HHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHH-HH--HTCCEEEEEESCCS
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCC-CC--CCCCCCCCCHHHHH
T ss_conf 000023555718999601121122221-1112222-22--22110013102334
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.20 E-value=0.028 Score=29.75 Aligned_cols=14 Identities=0% Similarity=-0.173 Sum_probs=5.3
Q ss_pred HHCHHHHHHHHHHH
Q ss_conf 02008999999999
Q 000713 271 KAEQAESCYFQFLD 284 (1335)
Q Consensus 271 ~~d~a~~~~~~f~~ 284 (1335)
.+++.+.+.+..++
T Consensus 167 ~~e~~~~i~~~I~~ 180 (192)
T d1lw7a2 167 YLDRYNQVKAVIEK 180 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.19 E-value=0.031 Score=29.37 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+|++|...+|||||++++.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.17 E-value=0.021 Score=30.62 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.022 Score=30.52 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.17 E-value=0.071 Score=26.74 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 929999867988789999998568
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+-.++|+|-..+|||||++++.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.046 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=26.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 509929999867988789999998568989
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
+++|+++.|.|+.|||||+|...++.....
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 859979999958999999999999999988
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.16 E-value=0.028 Score=29.68 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++.|+|+.||||||+.+.+...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.09 E-value=0.033 Score=29.20 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.04 E-value=0.059 Score=27.33 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 850992999986798878999999856898998379992939999157
Q 000713 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT 699 (1335)
Q Consensus 652 ~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~ 699 (1335)
-+++|+++.|.|+.|||||+|..-++-........-..++...|+..+
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~ 77 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 986996999983899988999999999863124312689639999402
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.02 E-value=0.18 Score=23.78 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=63.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 50992999986798878999999856898998379992939999157768888888984139999937899999981337
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLI 732 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~ 732 (1335)
++...-+.+.||.|+|||+|.+++.++... .+-++. .
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE----------------------------------H
T ss_conf 998875788789987630477887877189---------479988----------------------------------7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH---------HHHHHHHHHHHHH---HC
Q ss_conf 88840999998522688887797999999999998149979998288888899---------9899999999999---73
Q 000713 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA---------HTASSLFNDYVME---AL 800 (1335)
Q Consensus 733 ~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~---------~~~~~i~~~~i~~---~l 800 (1335)
.++.. +..| ...++-|-.+.+|-...|-|+++||.-..... ...+.+.+..+.. ..
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred --CCCEEEEECCCCCCCC
Q ss_conf --9978999816888612
Q 000713 801 --SGKVVLLVTHQVDFLP 816 (1335)
Q Consensus 801 --~~kTvilvTH~~~~l~ 816 (1335)
.+.-+|..||+.+.++
T Consensus 143 ~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIID 160 (265)
T ss_dssp ---CCEEEECCBSCTTTS
T ss_pred CCCCEEEEEECCCCHHCC
T ss_conf 779989999179922279
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.87 E-value=0.036 Score=28.88 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099299998679887899999985689
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
++.-.++++|..|+|||||+..+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.021 Score=30.59 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=4.9
Q ss_pred EECCCEEEEE
Q ss_conf 5099299998
Q 000713 653 VRPGQKVAIC 662 (1335)
Q Consensus 653 i~~G~~v~Iv 662 (1335)
..+|..++|+
T Consensus 79 ~~~g~~vavl 88 (327)
T d2p67a1 79 IREGLKVAVI 88 (327)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7569833220
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.81 E-value=0.025 Score=30.05 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 92999986798878999999856898998
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~~~~ 684 (1335)
+++++|.|+.||||||+.+.|.-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.80 E-value=0.11 Score=25.36 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.1 Score=25.59 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999867988789999998568
Q 000713 657 QKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
-+++++|..|+|||||+..+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.71 E-value=0.048 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHCCCCC-EEEEECCCCCCCHHHHH
Q ss_conf 99999999999814997-99982888888999899
Q 000713 756 GQKQRIQLARALYQDAD-IYLLDDPFSAVDAHTAS 789 (1335)
Q Consensus 756 GQkqRi~LARAly~~~~-i~lLDdp~salD~~~~~ 789 (1335)
|+..-+.-+......+| +++.-|...+....+.+
T Consensus 68 g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~ 102 (179)
T d1wb1a4 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGE 102 (179)
T ss_dssp SHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 22321000123443024321212222211023454
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.63 E-value=0.044 Score=28.24 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++++|+.|+|||||++.+.++..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.62 E-value=0.047 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.58 E-value=0.044 Score=28.25 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99299998679887899999985689
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+..++|+|...+|||||++++.+.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.56 E-value=0.05 Score=27.84 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.-++|+|+.|+|||||++.+++.-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999989899999998099
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.55 E-value=0.027 Score=29.83 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=34.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8509929999867988789999998568989983799929399991577
Q 000713 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA 700 (1335)
Q Consensus 652 ~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~p 700 (1335)
-++.|.++-+.|+.|||||++...++....+.. |.++|+.-+-
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEECCC
T ss_conf 866754789805876522799999999997079------9899998876
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.53 E-value=0.043 Score=28.32 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=6.7
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 99958998689999999
Q 000713 1268 GIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1268 GIVGRTGSGKSTL~~aL 1284 (1335)
.|+|.+||||||++..|
T Consensus 6 ii~G~pGsGKTTla~~L 22 (152)
T d1ly1a_ 6 LTIGCPGSGKSTWAREF 22 (152)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99899999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.52 E-value=0.058 Score=27.41 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099299998679887899999985689
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
|+|-.++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.47 E-value=0.049 Score=27.91 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=5.4
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 99958998689999999
Q 000713 1268 GIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1268 GIVGRTGSGKSTL~~aL 1284 (1335)
-++|..||||||+..+|
T Consensus 10 ~l~G~~GsGKTTia~~L 26 (183)
T d1m8pa3 10 FLTGYMNSGKDAIARAL 26 (183)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 98899999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.46 E-value=0.049 Score=27.96 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=5.8
Q ss_pred HHCCCCEEEEECC
Q ss_conf 9739978999816
Q 000713 798 EALSGKVVLLVTH 810 (1335)
Q Consensus 798 ~~l~~kTvilvTH 810 (1335)
....++.+++=+|
T Consensus 78 ~~~~~~~vl~d~~ 90 (190)
T d1khta_ 78 EMAKESPVAVDTH 90 (190)
T ss_dssp HHHTTSCEEEECC
T ss_pred HHHCCCEEEECCC
T ss_conf 9847996998784
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.42 E-value=0.048 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHH--HHH-CCCCEEEEECCCCCC
Q ss_conf 99799982888888-9998999999999--997-399789998168886
Q 000713 770 DADIYLLDDPFSAV-DAHTASSLFNDYV--MEA-LSGKVVLLVTHQVDF 814 (1335)
Q Consensus 770 ~~~i~lLDdp~sal-D~~~~~~i~~~~i--~~~-l~~kTvilvTH~~~~ 814 (1335)
+.-+++.|...... ...+..++.+... ... .+++-++++-|..+.
T Consensus 75 ~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~ 123 (209)
T d1nrjb_ 75 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123 (209)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 4562489973462339999999999999999987436986999980034
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.37 E-value=0.038 Score=28.76 Aligned_cols=25 Identities=44% Similarity=0.765 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999867988789999998568989
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.32 E-value=0.034 Score=29.12 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=25.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 685099299998679887899999985689
Q 000713 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 651 l~i~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+.-++|..+-++|.+||||||+.+.+.-.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 858998699998999999899999999887
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.27 E-value=0.049 Score=27.94 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98522688887797-------99999999999814997--999828888889998999999999997399789998168
Q 000713 742 DNTEIGERGVNLSG-------GQKQRIQLARALYQDAD--IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811 (1335)
Q Consensus 742 d~T~IGe~G~~LSG-------GQkqRi~LARAly~~~~--i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~ 811 (1335)
+.+.|.-.|.+-+. .+.+.-.+++...++++ ++...+............+.+.. . -...+|++++|+-
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~-~~~~r~i~Vitk~ 208 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D-PEGKRTIGVITKL 208 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C-SSCSSEEEEEECT
T ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH-C-CCCCEEEEEEECC
T ss_conf 806865888644366884035899999999999827775168763256310034999999973-8-6788589998204
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.18 E-value=0.034 Score=29.07 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=6.2
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999958998689999999
Q 000713 1267 IGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1267 VGIVGRTGSGKSTL~~aL 1284 (1335)
|||||++++|||||+++|
T Consensus 4 VaiiG~~nvGKSSLin~L 21 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVV 21 (185)
T ss_dssp EEEESSTTSSHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999899998799999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.13 E-value=0.058 Score=27.40 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.11 E-value=0.05 Score=27.85 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 875999995899868999999940
Q 000713 1263 GGHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1263 ~GeKVGIVGRTGSGKSTL~~aLfR 1286 (1335)
..-||.+||++|+|||||++.|.+
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 777899999999898999999967
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=0.059 Score=27.31 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.07 E-value=0.043 Score=28.37 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999867988789999998568989
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
...+.+.||.||||||+.+++.+++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.05 E-value=0.053 Score=27.70 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0992999986798878999999856898
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
++.-+++|-|+.||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.02 E-value=0.047 Score=28.04 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.98 E-value=0.055 Score=27.56 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999867988789999998568
Q 000713 657 QKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
-.++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.89 E-value=0.041 Score=28.48 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999589986899999994
Q 000713 1267 IGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1267 VGIVGRTGSGKSTL~~aLf 1285 (1335)
|||+|++|+|||||+++|.
T Consensus 4 VaivG~~nvGKSTLin~L~ 22 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMT 22 (180)
T ss_dssp EEEECCGGGCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999998999999996
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.073 Score=26.68 Aligned_cols=20 Identities=50% Similarity=0.722 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99995899868999999940
Q 000713 1267 IGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1267 VGIVGRTGSGKSTL~~aLfR 1286 (1335)
|+|+|++|+|||||+++|.+
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.75 E-value=0.081 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=11.6
Q ss_pred HHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9999814997999828888889
Q 000713 763 LARALYQDADIYLLDDPFSAVD 784 (1335)
Q Consensus 763 LARAly~~~~i~lLDdp~salD 784 (1335)
.+.+........+.|+......
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~ 99 (178)
T d1qhxa_ 78 GVVAMARAGARIIIDDVFLGGA 99 (178)
T ss_dssp HHHHHHHTTCEEEEEECCTTTH
T ss_pred HHHHHHHHCCCEEEEEEECCHH
T ss_conf 9999874145427864201359
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.071 Score=26.77 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09929999867988789999998568989
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
++|.+++|.|+-||||||+.+.+...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.15 Score=24.38 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.67 E-value=0.076 Score=26.54 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=22.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 509929999867988789999998568
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
-++-+++.++|+.||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.077 Score=26.51 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8509929999867988789999998568989983799929399991577
Q 000713 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA 700 (1335)
Q Consensus 652 ~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~p 700 (1335)
-+++|+.+.|.|+.|||||++...++.+.............+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.039 Score=28.65 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99299998679887899999985689
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+|..+.++|+.||||||+.+.+.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.64 E-value=0.072 Score=26.72 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986798878999999856
Q 000713 658 KVAICGEVGSGKSTLLAAILG 678 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilG 678 (1335)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.63 E-value=0.061 Score=27.22 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998679887899999985
Q 000713 658 KVAICGEVGSGKSTLLAAIL 677 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~il 677 (1335)
+++|+|+.||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.14 Score=24.63 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
=.++++|..|+|||||+..+++.-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989978999999997197
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.56 E-value=0.069 Score=26.82 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5999995899868999999940
Q 000713 1265 HKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1265 eKVGIVGRTGSGKSTL~~aLfR 1286 (1335)
=||.|||+.|+|||||++.+..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 2999999999899999999967
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.54 E-value=0.14 Score=24.51 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 95000026850992999986798878999999856898998379992939
Q 000713 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT 693 (1335)
Q Consensus 644 ~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~i 693 (1335)
..++..-+.+ .|.-+.++|++|+||||+...++. .|.-.+....
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~-----~G~~lvaDD~ 47 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGDDA 47 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEEEE
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH-----CCCCEECCCE
T ss_conf 3178999999-999999981899998999999998-----5974165876
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.54 E-value=0.1 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=10.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.|||..|+|||||++.|-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~ 23 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFN 23 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 99999999989999999980
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.47 E-value=0.066 Score=26.99 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 799999999999814997--999828888889998999999999997399789998168
Q 000713 755 GGQKQRIQLARALYQDAD--IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811 (1335)
Q Consensus 755 GGQkqRi~LARAly~~~~--i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~ 811 (1335)
..+.+-..+++....+++ +++.++....+.......+.+. + .....++++++|+-
T Consensus 146 ~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~-~-~~~~~r~i~Vltk~ 202 (299)
T d2akab1 146 DIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE-V-DPQGQRTIGVITKL 202 (299)
T ss_dssp THHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH-H-CTTCSSEEEEEECG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-H-CCCCCCEEEEEECC
T ss_conf 479999999999862756035664034542112599999997-3-86778136677026
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.46 E-value=0.071 Score=26.76 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=8.4
Q ss_pred HHHCCCCCEEEEECCCCC
Q ss_conf 998149979998288888
Q 000713 765 RALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 765 RAly~~~~i~lLDdp~sa 782 (1335)
.....+....+.|.....
T Consensus 67 ~~~~~~~~~~iid~~~~~ 84 (176)
T d2bdta1 67 VNFLLAQNDVVLDYIAFP 84 (176)
T ss_dssp HHHHHTTCEEEEESCCCH
T ss_pred HHHHHCCCCCCCCCCCCC
T ss_conf 999862788522444352
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.46 E-value=0.068 Score=26.90 Aligned_cols=21 Identities=38% Similarity=0.377 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999995899868999999940
Q 000713 1266 KIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLfR 1286 (1335)
||.+||+.|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.068 Score=26.90 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=3.8
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998568
Q 000713 670 STLLAAILGE 679 (1335)
Q Consensus 670 StLl~~ilGe 679 (1335)
+..|..+++.
T Consensus 97 a~~L~~lL~~ 106 (308)
T d1sq5a_ 97 ARVLQALLSR 106 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
T ss_conf 9999999730
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.057 Score=27.46 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
++++++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.21 E-value=0.088 Score=26.06 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99299998679887899999985689
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+...+.|+||.||||||+...|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.18 E-value=0.09 Score=26.00 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=17.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2875999995899868999999940
Q 000713 1262 EGGHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1262 ~~GeKVGIVGRTGSGKSTL~~aLfR 1286 (1335)
+..-||.+||+.|+|||||++.|..
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.085 Score=26.19 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|+.|+|||||++.+++.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.18 E-value=0.095 Score=25.85 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=8.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHH
Q ss_conf 9799982888888999899999
Q 000713 771 ADIYLLDDPFSAVDAHTASSLF 792 (1335)
Q Consensus 771 ~~i~lLDdp~salD~~~~~~i~ 792 (1335)
+.+|+-..|+.+-.........
T Consensus 112 ~~~~ir~~~~~~~~gg~~~~~~ 133 (323)
T d2qm8a1 112 RNAFIRPSPSSGTLGGVAAKTR 133 (323)
T ss_dssp TTEEEECCCCCSSHHHHHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHH
T ss_conf 4401126653453311067789
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.08 E-value=0.078 Score=26.45 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999867988789999998568989
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
.++|+||+||||+||.+.++-+.+.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~ 26 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSS 26 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 1999999999999999999974887
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.23 Score=23.08 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.04 E-value=0.089 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+|.+++|-|+-||||||+...+...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.03 E-value=0.07 Score=26.80 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 299998679887899999985
Q 000713 657 QKVAICGEVGSGKSTLLAAIL 677 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~il 677 (1335)
-+++|+|+.||||||+...+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.94 E-value=0.087 Score=26.11 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
-++|+|.+++|||||+.+|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.93 E-value=0.095 Score=25.83 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986798878999999856898
Q 000713 659 VAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+||+|.+.+|||||+.+|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.81 E-value=0.092 Score=25.95 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCC---CCCCCCEEEEEEC
Q ss_conf 9799999999999814997999828888889998999999999997--39978999816888---6123796999949
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA--LSGKVVLLVTHQVD---FLPAFDSVLLMSD 826 (1335)
Q Consensus 754 SGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~--l~~kTvilvTH~~~---~l~~~D~iivl~~ 826 (1335)
.-|.-.|-.|++.+..++.. ...+...+-..+.+...... ...+-+++...-+- ....+|.+++++-
T Consensus 61 ~d~~i~r~~l~~~vf~~~~~------~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~ll~e~~~~~~~d~ii~v~~ 132 (205)
T d1jjva_ 61 EQGELNRAALRERVFNHDED------KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (205)
T ss_dssp -----CHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHH------HHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHEEEECC
T ss_conf 78865289886441001356------6676403678999999999863569869997122100000222112001211
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.098 Score=25.74 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|+.|+|||||++.+.+.-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.69 E-value=0.1 Score=25.63 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
++-.++|+|...+|||||++++.|.-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.69 E-value=0.048 Score=28.01 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 759999958998689999999403
Q 000713 1264 GHKIGIVGRTGSGKTTLRGALFRL 1287 (1335)
Q Consensus 1264 GeKVGIVGRTGSGKSTL~~aLfRl 1287 (1335)
.-||+|||++++|||||+++|.+-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 978999889999899999998589
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.67 E-value=0.096 Score=25.82 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999995899868999999940
Q 000713 1266 KIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLfR 1286 (1335)
||.+||+.|+|||||++.|..
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999958
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.62 E-value=0.091 Score=25.97 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||++.++++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.099 Score=25.70 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.57 E-value=0.11 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09929999867988789999998568989
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
.+|.++++-|+-||||||+...+.-.+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.56 E-value=0.17 Score=23.96 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=27.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 2685099299998679887899999985689899837999293
Q 000713 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK 692 (1335)
Q Consensus 650 ~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~ 692 (1335)
+.-.-.|.-+.++|++|+||||+...++. .|.-.+...
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~-----~g~~lv~DD 45 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ-----RGHRLIADD 45 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH-----TTCEEEEEE
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH-----CCCEEEECC
T ss_conf 99999999999980899998999999998-----599198168
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.11 Score=25.52 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.52 E-value=0.19 Score=23.73 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=27.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEEC
Q ss_conf 099299998679887899999985689899837999293999915
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQ 698 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q 698 (1335)
+++..++++||+|+||||.+.-+...+.. .| .+++.+.=
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~-~g-----~kV~lit~ 42 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN-LG-----KKVMFCAG 42 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT-TT-----CCEEEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEE
T ss_conf 99779999899999889999999999997-79-----90799981
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.49 E-value=0.34 Score=21.85 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=28.7
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEE
Q ss_conf 2685099299998679887899999985689899837999293999
Q 000713 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAY 695 (1335)
Q Consensus 650 ~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iay 695 (1335)
++-.-.|.-+.++|++|+||||+...++. .|.-.+......
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~-----~g~~li~DD~~~ 49 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK-----RGHRLVADDNVE 49 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH-----TTCEEEESSEEE
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH-----CCCEEEECCEEE
T ss_conf 99999999999980899999999999998-----499388178689
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.47 E-value=0.098 Score=25.74 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEE--EECCCCCCCHH-HHHHHHHHHHH-HHC-CCCEEEEECCCCCC
Q ss_conf 79799999999999814997999--82888888999-89999999999-973-99789998168886
Q 000713 753 LSGGQKQRIQLARALYQDADIYL--LDDPFSAVDAH-TASSLFNDYVM-EAL-SGKVVLLVTHQVDF 814 (1335)
Q Consensus 753 LSGGQkqRi~LARAly~~~~i~l--LDdp~salD~~-~~~~i~~~~i~-~~l-~~kTvilvTH~~~~ 814 (1335)
..|..+.|....+..+..++.++ .|-.-..-+.. ..+.+.+.+.. ... ++..++++-+..+.
T Consensus 54 ~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl 120 (207)
T d2fh5b1 54 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120 (207)
T ss_dssp CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 2112343301566655430556347776665345999999999999768875158947999988546
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.38 E-value=0.13 Score=24.76 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHH-CCCCCCCHHH
Q ss_conf 95000026-850992999986798878999999856898998379992939999157768888888984-1399999378
Q 000713 644 PTMRNISL-EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENI-LFGSPMDSHQ 721 (1335)
Q Consensus 644 ~~L~~i~l-~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNI-lfg~~~~~~~ 721 (1335)
+.|+++-- -+++|+++.|.|++|+|||+|..-++....... ...+.|++-+.-. ..++... .++ ++...
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~-----~~~~~~~s~e~~~--~~~~~~~~~~~--~~~~~ 83 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEETP--QDIIKNARSFG--WDLAK 83 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSCH--HHHHHHHGGGT--CCHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCCH--HHHHHHHHHCC--CCHHH
T ss_conf 779885568996983999994799999999999999999856-----8874201266799--99999999849--98489
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHH-HHHHHC-CCCCEEEEECCCCCC----CHHHHHHHHHH
Q ss_conf 999999813378884099999852268888779799-99999-999981-499799982888888----99989999999
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ-KQRIQ-LARALY-QDADIYLLDDPFSAV----DAHTASSLFND 794 (1335)
Q Consensus 722 y~~vl~~c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ-kqRi~-LARAly-~~~~i~lLDdp~sal----D~~~~~~i~~~ 794 (1335)
+ ++.-... .. +.....+.-....... ..-+. +.+++. .++++++.|....-. +.......+..
T Consensus 84 ~---~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~ 153 (242)
T d1tf7a1 84 L---VDEGKLF-IL------DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR 153 (242)
T ss_dssp H---HHTTSEE-EE------ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH
T ss_pred H---HHHCCHH-HH------HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8---8714302-44------421033544443024589999999999886312220020788998760572678999999
Q ss_pred HHHH-HCCCCEEEEECCCCCC
Q ss_conf 9999-7399789998168886
Q 000713 795 YVME-ALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 795 ~i~~-~l~~kTvilvTH~~~~ 814 (1335)
++.. ...+.|++++.|...-
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (242)
T d1tf7a1 154 LVARLKQIGATTVMTTERIEE 174 (242)
T ss_dssp HHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHCCCCEEEEECCCCC
T ss_conf 999998639716884210255
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.1 Score=25.69 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.++|+.||||||+.+.+.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.11 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
=+++++|..|+|||||++.+++..
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999979999999997498
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.18 E-value=0.1 Score=25.66 Aligned_cols=20 Identities=50% Similarity=0.679 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998679887899999985
Q 000713 658 KVAICGEVGSGKSTLLAAIL 677 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~il 677 (1335)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.13 E-value=0.12 Score=25.09 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 685099299998679887899999985
Q 000713 651 LEVRPGQKVAICGEVGSGKSTLLAAIL 677 (1335)
Q Consensus 651 l~i~~G~~v~IvG~~GsGKStLl~~il 677 (1335)
+++.++ +++++|+|||||||+|.||.
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 967998-19999999984899999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.10 E-value=0.12 Score=25.23 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.09 E-value=0.039 Score=28.63 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=28.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 2999986798878999999856898998379992939999157768
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi 702 (1335)
-+++|+|++||||||+.+++...+... | -+.+.++|..+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~-~-----v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE-G-----VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-T-----CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-C-----CCEEEEECCCCC
T ss_conf 899998999780999999999997156-9-----976999477787
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.26 Score=22.64 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=6.9
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.++|.+|+|||||++.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~ 22 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRF 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999998997989999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.05 E-value=0.12 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
.++++|+.|+|||||+..+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.98 E-value=0.076 Score=26.54 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5099299998679887899999985689
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
++++..+.+.||.||||||+.+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.96 E-value=0.11 Score=25.33 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 9979998288888899989999999999973997899981688861
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815 (1335)
Q Consensus 770 ~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l 815 (1335)
|.-|++.| ...++.+++.+++ +.+. ..++-+|++-+..+.+
T Consensus 95 D~~ilVvd-a~~g~~~~~~~~~-~~~~---~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 95 DLAILIVD-INEGFKPQTQEAL-NILR---MYRTPFVVAANKIDRI 135 (227)
T ss_dssp SEEEEEEE-TTTCCCHHHHHHH-HHHH---HTTCCEEEEEECGGGS
T ss_pred CEEEEEEE-CCCCCCCCHHHHH-HHHH---CCCCEEEEEEECCCCC
T ss_conf 45899986-1237632025777-7764---3797599999893078
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.95 E-value=0.11 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=11.7
Q ss_pred CCEEEEECCCC---CCCCCCCEEEEEE
Q ss_conf 97899981688---8612379699994
Q 000713 802 GKVVLLVTHQV---DFLPAFDSVLLMS 825 (1335)
Q Consensus 802 ~kTvilvTH~~---~~l~~~D~iivl~ 825 (1335)
..-+++-...+ .....+|.+++++
T Consensus 101 ~~~vi~e~~~~~~~~~~~~~d~vI~v~ 127 (191)
T d1uf9a_ 101 APLVFLEIPLLFEKGWEGRLHGTLLVA 127 (191)
T ss_dssp CSEEEEECTTTTTTTCGGGSSEEEEEC
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf 616999840100245443310279980
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.13 Score=24.89 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||++.+++..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.93 E-value=0.13 Score=24.80 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.+..+.|.|+.|+|||||+..++.+..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.098 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 299998679887899999985689899837
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGT 686 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~~~G~ 686 (1335)
..+.|+|++|||||+++..++-..-...+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~ 80 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDR 80 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 658999079996899999999999847998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.89 E-value=0.15 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=25.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5099299998679887899999985689
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++|+++.|.|+.|+|||++..-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.065 Score=27.01 Aligned_cols=15 Identities=0% Similarity=-0.210 Sum_probs=5.1
Q ss_pred HHCCCCCEEEEECCC
Q ss_conf 981499799982888
Q 000713 766 ALYQDADIYLLDDPF 780 (1335)
Q Consensus 766 Aly~~~~i~lLDdp~ 780 (1335)
....+......|-..
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (195)
T d1x6va3 86 LFADAGLVCITSFIS 100 (195)
T ss_dssp HHHHTTCEEEEECCC
T ss_pred HHHHCCCCCCCCCCC
T ss_conf 998659863344224
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.87 E-value=0.13 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986798878999999856
Q 000713 658 KVAICGEVGSGKSTLLAAILG 678 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilG 678 (1335)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.12 Score=25.09 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||++.+.+.-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.73 E-value=0.14 Score=24.67 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.70 E-value=0.12 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999867988789999998568989
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
..+.+.||+|+||||+..+++.++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.70 E-value=0.14 Score=24.72 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=8.9
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 14997999828888
Q 000713 768 YQDADIYLLDDPFS 781 (1335)
Q Consensus 768 y~~~~i~lLDdp~s 781 (1335)
-.+.++.++|....
T Consensus 83 ~~~~~~vi~d~~~~ 96 (213)
T d1bifa1 83 EEGGHVAVFDATNT 96 (213)
T ss_dssp TTCCSEEEEESCCC
T ss_pred HCCCCEEEEECCCC
T ss_conf 61898898606776
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.68 E-value=0.11 Score=25.43 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85699826999999500002685099299998679887899999985689
Q 000713 631 KSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 631 ~~~~f~w~~~~~~~~L~~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++.+..+++. -..|+.++= +=..|+|+|+.++|||+||+.++|..
T Consensus 11 ~~~~l~~~~e~-l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEA-LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHH-HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHH-HHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999-999970799---87999988999997999999980998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.65 E-value=0.15 Score=24.39 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8509929999867988789999998568989
Q 000713 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 652 ~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
..++|.++.+.|+.||||||+.+.++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.62 E-value=0.082 Score=26.32 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9929999867988789999998568
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+.-.++++|+.|+|||||+..+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.45 E-value=0.16 Score=24.14 Aligned_cols=13 Identities=8% Similarity=-0.089 Sum_probs=6.0
Q ss_pred CCCCEEEEECCCC
Q ss_conf 3997899981688
Q 000713 800 LSGKVVLLVTHQV 812 (1335)
Q Consensus 800 l~~kTvilvTH~~ 812 (1335)
..+..+|+.+-..
T Consensus 95 ~~g~~viv~~i~~ 107 (208)
T d1m7ga_ 95 DSNSIAITSFISP 107 (208)
T ss_dssp HTTCEEEEECCCC
T ss_pred CCCCCEEEECCCC
T ss_conf 2697326510200
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.13 Score=24.83 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.28 E-value=0.14 Score=24.56 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.23 E-value=0.19 Score=23.66 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=8.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.+||..|+|||||++.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~ 24 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRF 24 (175)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999990989999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.19 E-value=0.2 Score=23.50 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=9.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.|.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~ 26 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYA 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.16 E-value=0.13 Score=24.91 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=3.4
Q ss_pred CCCEEEEECC
Q ss_conf 9979998288
Q 000713 770 DADIYLLDDP 779 (1335)
Q Consensus 770 ~~~i~lLDdp 779 (1335)
+.|++|.|=|
T Consensus 88 ~~d~ilIDTa 97 (207)
T d1okkd2 88 GYDLLFVDTA 97 (207)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEECCCC
T ss_conf 9999971752
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.15 Score=24.35 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||+..+.+.-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.13 E-value=0.15 Score=24.41 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHH
Q ss_conf 9999999999814997--9998288888899989999
Q 000713 757 QKQRIQLARALYQDAD--IYLLDDPFSAVDAHTASSL 791 (1335)
Q Consensus 757 QkqRi~LARAly~~~~--i~lLDdp~salD~~~~~~i 791 (1335)
++..+..+..-.+.+| +++.|-.-.....++.+++
T Consensus 88 h~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~ 124 (195)
T d1kk1a3 88 HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL 124 (195)
T ss_dssp HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 3556677653322223310000113566653167999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=0.13 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099299998679887899999985689
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
++-..+.|+||.||||||+...|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.14 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.15 Score=24.35 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.01 E-value=0.29 Score=22.31 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=7.9
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.+||..|+|||||++.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~ 25 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQF 25 (171)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999999997999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.17 Score=24.07 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||+..+++.-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999997299
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.88 E-value=0.16 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.22 Score=23.23 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999867988789999998568989
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.74 E-value=0.16 Score=24.10 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--HHCCCCEEEEECCCCCC---CCCCCEEEEEEC
Q ss_conf 97999999999998149979998288888899989999999999--97399789998168886---123796999949
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVM--EALSGKVVLLVTHQVDF---LPAFDSVLLMSD 826 (1335)
Q Consensus 754 SGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~--~~l~~kTvilvTH~~~~---l~~~D~iivl~~ 826 (1335)
..|.-.|-.|+..+..++.- ...|...+...+.+.... .....+-+++...-+-. ...+|.+++..-
T Consensus 62 ~~~~i~r~~L~~~vf~~~~~------~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~ll~e~~~~~~~~~iI~V~a 133 (208)
T d1vhta_ 62 ADGTLQRRALRERIFANPEE------KNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDV 133 (208)
T ss_dssp TTSCBCHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTTGGGGCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEC
T ss_conf 78652001246665213889------9999988689999999998777426775333101102454556888999968
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.72 E-value=0.16 Score=24.11 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.++.++|..|+|||||+..+.+.-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989938899999997199
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.15 Score=24.40 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.5
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0026850992999986798878999999856898
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 648 ~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
|.=+.+.+|+..+|.|+.|+|||+|+..|..-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.66 E-value=0.098 Score=25.72 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.19 Score=23.69 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|+.|+|||||+..+++.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.49 E-value=0.16 Score=24.17 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998679887899999985--68989983
Q 000713 658 KVAICGEVGSGKSTLLAAIL--GEVPHTQG 685 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~il--Ge~~~~~G 685 (1335)
++.++|..|+|||||+.-+- -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.45 E-value=0.17 Score=24.02 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=9.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.+||+.|+|||||++.|
T Consensus 18 kI~vvG~~~vGKSsLi~~l 36 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQL 36 (176)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999998999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.43 E-value=0.13 Score=24.83 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=32.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 850992999986798878999999856898998379992939999157
Q 000713 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT 699 (1335)
Q Consensus 652 ~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~ 699 (1335)
-+++|.++-+.|+.|||||++...++....+..| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.41 E-value=0.18 Score=23.81 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
-++|+|.+++|||||+.+|++.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.39 E-value=0.33 Score=21.94 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4226127862875999995899868999999940
Q 000713 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1253 VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfR 1286 (1335)
.+|+-...+ .|.-|-|.|++|+||||+...|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.24 Score=22.96 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=19.4
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH---HHHHHCCCCEEEEECCCCC
Q ss_conf 99998149979998288888899989999999---9999739978999816888
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFND---YVMEALSGKVVLLVTHQVD 813 (1335)
Q Consensus 763 LARAly~~~~i~lLDdp~salD~~~~~~i~~~---~i~~~l~~kTvilvTH~~~ 813 (1335)
+.+..+.++|.+++ .++.-|..+-.++.+. .......+..+++|-+..+
T Consensus 68 ~~~~~~~~~d~~il--v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (173)
T d2a5ja1 68 ITRSYYRGAAGALL--VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119 (173)
T ss_dssp CCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred HHHHHHHCCCEEEE--EEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 77887404678999--97525848877678889999985799985999952775
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.31 E-value=0.096 Score=25.79 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||+..+++.-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949999999997098
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.28 E-value=0.19 Score=23.58 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
-.++|-||.||||||..+.|.-.+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.24 E-value=0.12 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=10.8
Q ss_pred HHHHHHHHHHCCC-CCCCCCCCCHHHHHHH
Q ss_conf 9999999987087-5410146800358787
Q 000713 991 LFSQLLNSLFRAP-MSFYDSTPLGRILSRV 1019 (1335)
Q Consensus 991 lh~~ll~~il~ap-msFFD~tp~GrIlnRf 1019 (1335)
++..+...+...| +.+|=.+|.-..+.|.
T Consensus 124 ~~~~~~~~~~~~pdl~i~Ld~~~~~~~~Ri 153 (197)
T d2vp4a1 124 WYKFIEESIHVQADLIIYLRTSPEVAYERI 153 (197)
T ss_dssp HHHHHHHHBCCCCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHEEECCHHHHHHHH
T ss_conf 999987511322201420240789999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.25 Score=22.82 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=8.9
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.+||..|+|||||++.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~ 23 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999998993999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.18 E-value=0.19 Score=23.59 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=52.0
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 02685099299998679887899999985689899837999293999915776888888898413999993789999998
Q 000713 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLER 728 (1335)
Q Consensus 649 i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~ 728 (1335)
+|+.-++-..++++||+|+||||.+.-+.-.+. .+| .+++.+.=+. |...-.++ ++.
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~Dt----------------~R~gA~eQ-L~~ 60 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAADT----------------FRAAAIEQ-LKI 60 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEECT----------------TCHHHHHH-HHH
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECC----------------CCCCHHHH-HHH
T ss_conf 767999998999989999988999999999999-779-----9069996013----------------34204678-887
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHH
Q ss_conf 1337888409999985226888877979999999999981499799982888-888999899
Q 000713 729 CSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF-SAVDAHTAS 789 (1335)
Q Consensus 729 c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~-salD~~~~~ 789 (1335)
-+-.-++. ......+..+ -.-.+-..+.+...+.|++|.|=|= +.-|.+.-.
T Consensus 61 ~a~~l~i~-------~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~ 113 (213)
T d1vmaa2 61 WGERVGAT-------VISHSEGADP--AAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLME 113 (213)
T ss_dssp HHHHHTCE-------EECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHH
T ss_pred HHHHCCCC-------CCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 76432764-------1036777768--99878878999876999899824553301688889
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.24 Score=22.97 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.|.
T Consensus 5 Ki~viG~~~vGKTsli~~l~ 24 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999979989999999998
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.13 E-value=0.14 Score=24.72 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCCCCEEEEECCCCCCCHHHH--------HHHHHHHHHHH-CCCCEEEEECCCC
Q ss_conf 149979998288888899989--------99999999997-3997899981688
Q 000713 768 YQDADIYLLDDPFSAVDAHTA--------SSLFNDYVMEA-LSGKVVLLVTHQV 812 (1335)
Q Consensus 768 y~~~~i~lLDdp~salD~~~~--------~~i~~~~i~~~-l~~kTvilvTH~~ 812 (1335)
..+++++++|- ++.++...+ ..+...+..-. ..+.++++++|--
T Consensus 145 ~~~~~~vvID~-l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 145 GLGCDVIILDH-ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp TTCCSEEEEEE-EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 36762599705-421203465443067789999999997650165520310356
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.06 E-value=0.18 Score=23.91 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999867988789999998568989
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
+++.|.|+.||||||+.+.+...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.01 E-value=0.078 Score=26.46 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=3.9
Q ss_pred CCCHHHHHHHHH
Q ss_conf 889998999999
Q 000713 782 AVDAHTASSLFN 793 (1335)
Q Consensus 782 alD~~~~~~i~~ 793 (1335)
|.|-.--...++
T Consensus 73 A~d~dlL~~~l~ 84 (288)
T d1a7ja_ 73 ANELKELERVFR 84 (288)
T ss_dssp GBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 265999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.00 E-value=0.23 Score=23.07 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~ 23 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFV 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999967899999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.97 E-value=0.21 Score=23.30 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.+++|.|..||||||+++.+...+.
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9899989987899999999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.95 E-value=0.2 Score=23.49 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 79799999999999814997999828
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 753 LSGGQkqRi~LARAly~~~~i~lLDd 778 (1335)
.+..+-......|.......-+++|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~dg 90 (194)
T d1qf9a_ 65 VPSIVTVKLLKNAIDANQGKNFLVDG 90 (194)
T ss_dssp CCHHHHHHHHHHHHHTSTTCCEEEET
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 20278999888776665328758873
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=87.82 E-value=0.15 Score=24.42 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0992999986798878999999856898
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+...-+.+.||.|+|||++.+++..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9888678668998882289999999829
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.76 E-value=0.14 Score=24.63 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=25.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50992999986798878999999856898
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
++++..+.++||.|+|||++..++++++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99767699989999888999999999859
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.67 E-value=0.26 Score=22.66 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=5.9
Q ss_pred CCCCHHHHHH-HHHHHH
Q ss_conf 8779799999-999999
Q 000713 751 VNLSGGQKQR-IQLARA 766 (1335)
Q Consensus 751 ~~LSGGQkqR-i~LARA 766 (1335)
.|++-.||.+ +.+|+.
T Consensus 73 t~~~~~~R~~~~~~a~~ 89 (172)
T d1yj5a2 73 TNPDVPSRARYIQCAKD 89 (172)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 67999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.66 E-value=0.23 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|.|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.15 Score=24.47 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCHHHHHH
Q ss_conf 087541014680035878
Q 000713 1001 RAPMSFYDSTPLGRILSR 1018 (1335)
Q Consensus 1001 ~apmsFFD~tp~GrIlnR 1018 (1335)
...+.+|=..|....+.|
T Consensus 152 ~Pdl~i~Ld~~pe~~~~R 169 (241)
T d1p5zb_ 152 ELDGIIYLQATPETCLHR 169 (241)
T ss_dssp CCSEEEEEECCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHH
T ss_conf 876554314588999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.63 E-value=0.21 Score=23.33 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++|+|+.|+|||||++.+.+.-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999996198
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.22 Score=23.19 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.58 E-value=0.11 Score=25.27 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.+.++||+|+||||+.++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.55 E-value=0.19 Score=23.68 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|.||.||||||+...|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.54 E-value=0.23 Score=23.04 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.49 E-value=0.22 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999867988789999998568
Q 000713 657 QKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
.+++|+|+.||||||+.+.+...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.43 E-value=0.24 Score=22.85 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|+|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.38 E-value=0.17 Score=23.91 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999986798878999999856898998
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~ 684 (1335)
.+.+.||.|+||||+.+++..++....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.32 E-value=0.31 Score=22.10 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.|.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~ 28 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFT 28 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989908899999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=87.29 E-value=0.22 Score=23.24 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998679887899999985689
Q 000713 659 VAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+.++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.21 E-value=0.037 Score=28.81 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999995899868999999940
Q 000713 1266 KIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLfR 1286 (1335)
||+++|++|+|||||+++|.+
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999958
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.29 Score=22.37 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=13.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 599999589986899999994
Q 000713 1265 HKIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1265 eKVGIVGRTGSGKSTL~~aLf 1285 (1335)
-||.|+|..|+|||||++.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 389999989929899999997
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.4 Score=21.33 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7999999999998149979998
Q 000713 755 GGQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 755 GGQkqRi~LARAly~~~~i~lL 776 (1335)
.||.+- +.+..|.+++.+++
T Consensus 64 ~g~e~~--~~~~~~~~~~~~il 83 (172)
T d2g3ya1 64 KGENEW--LHDHCMQVGDAYLI 83 (172)
T ss_dssp THHHHH--HHHCCCCCCSEEEE
T ss_pred CCCCCC--CCCCCCCCCCEEEE
T ss_conf 222212--23333334420334
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.28 Score=22.46 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--HHHHC--CCCEEEEECCCCCC
Q ss_conf 99999981499799982888888999899999999--99973--99789998168886
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY--VMEAL--SGKVVLLVTHQVDF 814 (1335)
Q Consensus 761 i~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~--i~~~l--~~kTvilvTH~~~~ 814 (1335)
-.+.+..|.++|.+++ .++.-|..+-.++.+.. +.... .+..+++|-+..+.
T Consensus 62 ~~~~~~~~~~~d~~il--v~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 117 (168)
T d2gjsa1 62 RWLPGHCMAMGDAYVI--VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 117 (168)
T ss_dssp --CHHHHHTSCSEEEE--EEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC
T ss_pred CEECCCCHHHHHHHCE--ECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCH
T ss_conf 0002310111110100--0134222221121212110000245553137985036552
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=0.32 Score=21.96 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=9.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFT 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999997
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=0.24 Score=22.88 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.07 E-value=0.24 Score=22.97 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
-+.+.||.|+|||++.+++..++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.99 E-value=0.29 Score=22.34 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=23.8
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 26850992999986798878999999856898
Q 000713 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 650 ~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
|++-++-..++++||+|+||||.+.-+.-.+.
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 77899997999989999998999999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.97 E-value=0.34 Score=21.82 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999867988789999998568989
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
-++|+|.+.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.97 E-value=0.43 Score=21.10 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999986798878999999856898998379
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G~v 687 (1335)
++.++|..|+|||||+.-+.....++.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999888999998840897972479
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.97 E-value=0.27 Score=22.50 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 9999999999981499799982888888999899999
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLF 792 (1335)
Q Consensus 756 GQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~ 792 (1335)
||..=-.+.+..|.+++.+++ .++.-|...-..+.
T Consensus 73 G~e~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~ 107 (186)
T d2f7sa1 73 GQERFRSLTTAFFRDAMGFLL--MFDLTSQQSFLNVR 107 (186)
T ss_dssp SHHHHHHHHHHHHTTCCEEEE--EEETTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEE--EEECCCCCCCEEEE
T ss_conf 645668899999726988999--99632345411454
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.96 E-value=0.24 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
++.++|..|+|||||+..++..
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.96 E-value=0.23 Score=23.00 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=5.8
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 49979998288888
Q 000713 769 QDADIYLLDDPFSA 782 (1335)
Q Consensus 769 ~~~~i~lLDdp~sa 782 (1335)
.+.+.+++|.--..
T Consensus 87 ~~~~~~vl~g~p~~ 100 (196)
T d1ukza_ 87 ANKHKFLIDGFPRK 100 (196)
T ss_dssp TTCCEEEEETCCCS
T ss_pred CCCCCEEEECCCHH
T ss_conf 37775354043136
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.87 E-value=0.27 Score=22.49 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=15.6
Q ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99799982888888-99989999999999973997899981688
Q 000713 770 DADIYLLDDPFSAV-DAHTASSLFNDYVMEALSGKVVLLVTHQV 812 (1335)
Q Consensus 770 ~~~i~lLDdp~sal-D~~~~~~i~~~~i~~~l~~kTvilvTH~~ 812 (1335)
|.-|++. |...++ ..++.+++.. ...+.-+.+|++-+..
T Consensus 111 d~ailvV-da~~gi~~~~t~e~~~~---~~~~~i~~iIV~vNK~ 150 (205)
T d2qn6a3 111 DGAILVV-AANEPFPQPQTREHFVA---LGIIGVKNLIIVQNKV 150 (205)
T ss_dssp SEEEEEE-ETTSCSSCHHHHHHHHH---HHHTTCCCEEEEEECG
T ss_pred CCCCCCC-CCCCCCCCHHHHHHHHH---HHHCCCCEEEECCCCC
T ss_conf 6442000-00140133267899999---9981983265414567
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.74 E-value=0.32 Score=22.00 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99299998679887899999985689
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+...++|+||.||||||+...|.-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.68 E-value=0.29 Score=22.35 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 929999867988789999998568989983
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~ilGe~~~~~G 685 (1335)
...+.+.||.|+|||++++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.68 E-value=0.15 Score=24.46 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.-+.++||+|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.66 E-value=0.26 Score=22.62 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999999999998149979998
Q 000713 756 GQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 756 GQkqRi~LARAly~~~~i~lL 776 (1335)
||..-....+..+.+++.+++
T Consensus 56 G~~~~~~~~~~~~~~~~~~i~ 76 (164)
T d1zd9a1 56 GQPRFRSMWERYCRGVSAIVY 76 (164)
T ss_dssp CSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHC
T ss_conf 001211222222223310110
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.33 Score=21.94 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHHCCCCEEEEECCCCCC
Q ss_conf 999981499799982888888999899999---9999997399789998168886
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLF---NDYVMEALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 763 LARAly~~~~i~lLDdp~salD~~~~~~i~---~~~i~~~l~~kTvilvTH~~~~ 814 (1335)
+.+..|.+++.+++ .++..|......+. +........+..+++|-+..+.
T Consensus 65 ~~~~~~~~~~~~il--v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (164)
T d1yzqa1 65 LIPSYIRDSAAAVV--VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 117 (164)
T ss_dssp GHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC
T ss_pred CHHHHHHCCCEEEE--EECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 43888616644999--606554313266676689999850899649997310340
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.53 E-value=0.23 Score=23.00 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986798878999999856
Q 000713 658 KVAICGEVGSGKSTLLAAILG 678 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilG 678 (1335)
-++|+|.+|||||||..+++-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.26 Score=22.68 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||+..+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.27 Score=22.59 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
+++++|..|+|||||+..+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=86.40 E-value=0.23 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.33 E-value=0.29 Score=22.26 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986798878999999856898
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.++|-||.||||+|+-+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.33 E-value=0.56 Score=20.25 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=19.1
Q ss_pred CCCCEEEEECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 226127862875999995899868999999940
Q 000713 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1254 Lk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfR 1286 (1335)
||+-.+ --.|.-|-|+|++|+||||+...|.+
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.34 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=5.2
Q ss_pred CCCEEEEECCCC
Q ss_conf 997899981688
Q 000713 801 SGKVVLLVTHQV 812 (1335)
Q Consensus 801 ~~kTvilvTH~~ 812 (1335)
.+.-+++|-+..
T Consensus 110 ~~~~iilv~nK~ 121 (194)
T d2bcgy1 110 STVLKLLVGNKC 121 (194)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEECC
T ss_conf 775399997214
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.29 E-value=0.34 Score=21.85 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=6.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999958998689999999
Q 000713 1267 IGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1267 VGIVGRTGSGKSTL~~aL 1284 (1335)
|.++|..|+|||||++.+
T Consensus 8 i~lvG~~~vGKTsLi~~l 25 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRF 25 (171)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999991989999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.24 E-value=0.3 Score=22.16 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+++++|..|+|||||+..+.+.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.12 E-value=0.39 Score=21.36 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.94 E-value=0.3 Score=22.17 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
.+.++|..|+|||||++.+++.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.93 E-value=0.31 Score=22.13 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=10.6
Q ss_pred CCCCCCCCHHHHHHHHCC
Q ss_conf 410146800358787168
Q 000713 1005 SFYDSTPLGRILSRVSSD 1022 (1335)
Q Consensus 1005 sFFD~tp~GrIlnRfS~D 1022 (1335)
.++-..|.-.+..|..+|
T Consensus 110 ~~~l~~~~e~~~~R~~~~ 127 (182)
T d1zina1 110 VIHIDVRQDVLMERLTAD 127 (182)
T ss_dssp EEEEECCHHHHHHHHHTT
T ss_pred EECCCCCCCHHHHCCCCC
T ss_conf 111112210233201354
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.3 Score=22.16 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=8.6
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.+||..|+|||||++.+
T Consensus 7 KivviG~~~vGKTsli~~~ 25 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISY 25 (183)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999997999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.83 E-value=0.29 Score=22.27 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998679887899999985689
Q 000713 659 VAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+.++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.78 E-value=0.3 Score=22.18 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999867988789999998568989
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
-+.+.||.|+|||++.+++..+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 4687669988830899999987488
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.77 E-value=0.31 Score=22.15 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.++||.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.73 E-value=0.42 Score=21.13 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=9.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.68 E-value=0.18 Score=23.90 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986798878999999856898
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
.-+.+.||.|||||++.+++..++.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.67 E-value=0.17 Score=24.07 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998679887899999985689
Q 000713 659 VAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
+.+.||.|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=0.3 Score=22.21 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.0
Q ss_pred HHHHHHHHCC
Q ss_conf 0358787168
Q 000713 1013 GRILSRVSSD 1022 (1335)
Q Consensus 1013 GrIlnRfS~D 1022 (1335)
--+..|..+|
T Consensus 114 ~~l~~R~~~~ 123 (179)
T d1e4va1 114 ELIVDRIVKD 123 (179)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHCCC
T ss_conf 2332230044
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.57 E-value=0.27 Score=22.52 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=11.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 99799982888888999899999
Q 000713 770 DADIYLLDDPFSAVDAHTASSLF 792 (1335)
Q Consensus 770 ~~~i~lLDdp~salD~~~~~~i~ 792 (1335)
|.-|++. |...++..++.+++-
T Consensus 92 D~avlVv-da~~Gv~~qt~~~~~ 113 (204)
T d2c78a3 92 DGAILVV-SAADGPMPQTREHIL 113 (204)
T ss_dssp SSEEEEE-ETTTCCCHHHHHHHH
T ss_pred CEEEEEE-ECCCCCCHHHHHHHH
T ss_conf 9999999-899998478999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.43 E-value=0.42 Score=21.13 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=8.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||+.|+|||||++.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999979999999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.19 E-value=0.32 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 97999999999998149979998288888899989999
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL 791 (1335)
Q Consensus 754 SGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i 791 (1335)
.|++..+-...+..|.++|.+++ .++.-|..+-+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~ 94 (165)
T d1z06a1 59 AGQERFRKSMVQHYYRNVHAVVF--VYDMTNMASFHSL 94 (165)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEE--EEETTCHHHHHTH
T ss_pred CCCHHHCCCCCEEEECCCCCEEE--EEEEEHHHHHHHH
T ss_conf 57311032121036427882499--9985235666655
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=85.18 E-value=0.27 Score=22.58 Aligned_cols=12 Identities=8% Similarity=-0.050 Sum_probs=4.7
Q ss_pred CHHHHHHHHHHH
Q ss_conf 979999999999
Q 000713 754 SGGQKQRIQLAR 765 (1335)
Q Consensus 754 SGGQkqRi~LAR 765 (1335)
.|++.|--..|+
T Consensus 52 ~gA~eQL~~~a~ 63 (213)
T d1vmaa2 52 AAAIEQLKIWGE 63 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 204678887764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=0.45 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=6.6
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999958998689999999
Q 000713 1267 IGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1267 VGIVGRTGSGKSTL~~aL 1284 (1335)
|.+||..|+|||||++.+
T Consensus 6 ivlvG~~~vGKTsLi~r~ 23 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRY 23 (167)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999993989999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.09 E-value=0.19 Score=23.64 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986798878999999856898
Q 000713 659 VAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+.+.||.|+||||+.+++.+++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=0.33 Score=21.94 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.9
Q ss_pred HHHHCCCCCCCC
Q ss_conf 998568989983
Q 000713 674 AAILGEVPHTQG 685 (1335)
Q Consensus 674 ~~ilGe~~~~~G 685 (1335)
++|=+..+.-.|
T Consensus 32 r~ID~l~PigrG 43 (289)
T d1xpua3 32 RVLDLASPIGRG 43 (289)
T ss_dssp HHHHHHSCCBTT
T ss_pred EEEEECCCCCCC
T ss_conf 356412564578
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.00 E-value=0.65 Score=19.78 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999867988789999998568989983
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G 685 (1335)
.+.|=|+.|+||||+++.+...+....+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~ 35 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSP 35 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999888667899999999998656997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.97 E-value=0.32 Score=21.99 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=5.1
Q ss_pred HHHCCCCCCCCEEE
Q ss_conf 98568989983799
Q 000713 675 AILGEVPHTQGTIQ 688 (1335)
Q Consensus 675 ~ilGe~~~~~G~v~ 688 (1335)
..|+.+.....-+.
T Consensus 98 ~fL~~ir~~d~lih 111 (296)
T d1ni3a1 98 AFLSHVRAVDAIYQ 111 (296)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99998612462699
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.78 E-value=0.49 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=3.6
Q ss_pred CCEEEEECCC
Q ss_conf 9789998168
Q 000713 802 GKVVLLVTHQ 811 (1335)
Q Consensus 802 ~kTvilvTH~ 811 (1335)
+..+++|-+.
T Consensus 106 ~~piilvgnK 115 (168)
T d2atva1 106 NVTLILVGNK 115 (168)
T ss_dssp CCCEEEEEEC
T ss_pred CCCEEEECCC
T ss_conf 7522665141
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.68 E-value=0.59 Score=20.05 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=30.8
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 00268509929999867988789999998568989983799
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 648 ~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~ 688 (1335)
|.-+.+.+|+..+|.|+.|+|||+|+..+..-.......+.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~ 100 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 100 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEE
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 10256367887776679998989999999998876179969
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=0.34 Score=21.78 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999867988789999998568989
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEVPH 682 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~~~ 682 (1335)
++++|-|..||||||+++.+.-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=84.59 E-value=0.4 Score=21.31 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998679887899999985689
Q 000713 659 VAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
++++|-+.+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.56 E-value=0.34 Score=21.79 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~ 27 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFI 27 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999979969899999997
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.50 E-value=0.31 Score=22.11 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.7
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 00268509929999867988789999998568
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 648 ~i~l~i~~G~~v~IvG~~GsGKStLl~~ilGe 679 (1335)
|.=+.+.+|+...|.|+.|+|||+|+..+.--
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 50145467766760067788857999997765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.40 E-value=0.39 Score=21.39 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.|.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989949999999997
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.39 E-value=0.42 Score=21.11 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|.||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.29 E-value=0.54 Score=20.32 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=3.8
Q ss_pred HCCCCCEEEE
Q ss_conf 8149979998
Q 000713 767 LYQDADIYLL 776 (1335)
Q Consensus 767 ly~~~~i~lL 776 (1335)
.|.+++.+++
T Consensus 71 ~~~~~~~~il 80 (167)
T d1c1ya_ 71 YMKNGQGFAL 80 (167)
T ss_dssp HHHHCSEEEE
T ss_pred CCCCCCEEEE
T ss_conf 1223553588
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.20 E-value=0.7 Score=19.55 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC-EECCCCCCCCEEECCCC
Q ss_conf 42261278628759999958998689999999403489987599979-41587689935605443
Q 000713 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG-KLAEYDEPMELMKREGS 1316 (1335)
Q Consensus 1253 VLk~is~~I~~GeKVGIVGRTGSGKSTL~~aLfRl~e~~~G~I~IDG-vDI~~~~~~~LV~Qep~ 1316 (1335)
.|++ ++---.|.-|-|.|++|+||||+...|.+- +.++.=|+ +.+...+.-.++..-|-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~----g~~li~DD~~~~~~~~~~~l~~~~p~ 64 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR----GHRLVADDNVEIREISKDELIGRAPK 64 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT----TCEEEESSEEEEEESSSSCEEEECCG
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC----CCEEEECCEEEEEEECCCEEEECCCC
T ss_conf 4889-999999999999808999999999999984----99388178689999169989964885
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.14 E-value=0.37 Score=21.55 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=5.1
Q ss_pred HHHHCCCCCEEEE
Q ss_conf 9998149979998
Q 000713 764 ARALYQDADIYLL 776 (1335)
Q Consensus 764 ARAly~~~~i~lL 776 (1335)
.+..+++++.+++
T Consensus 71 ~~~~~~~~~~~i~ 83 (174)
T d2bmea1 71 TRSYYRGAAGALL 83 (174)
T ss_dssp HHTTSTTCSEEEE
T ss_pred HHHHHHHCCEEEE
T ss_conf 7888652779999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=84.07 E-value=0.46 Score=20.86 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
....++++||+|+||||.+.-|...+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989999988999999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.03 E-value=0.28 Score=22.44 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHH
Q ss_conf 09929999867988789999998568989983799929399991577688888889841399999378999999813378
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIK 733 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~~ 733 (1335)
++-..++++||+|+||||.+.-+...+.. .| .+++.+.=+.+ ...-. +.-....
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g-----~kV~lit~Dt~----------------R~ga~----eQL~~~a 63 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK-KG-----FKVGLVGADVY----------------RPAAL----EQLQQLG 63 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH-TT-----CCEEEEECCCS----------------SHHHH----HHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEEECC----------------CCCHH----HHHHHHC
T ss_conf 99989999899999989999999999997-79-----93699972023----------------55156----7898740
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCC
Q ss_conf 88409999985226888877979999999999981499799982888-8889
Q 000713 734 DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF-SAVD 784 (1335)
Q Consensus 734 dl~~lp~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~-salD 784 (1335)
++...| ....+....+. .-.+=++..+...+.|++|.|=|= +..|
T Consensus 64 ~~l~v~----~~~~~~~~~~~--~~~~~a~~~~~~~~~d~IlIDTaGr~~~~ 109 (211)
T d1j8yf2 64 QQIGVP----VYGEPGEKDVV--GIAKRGVEKFLSEKMEIIIVDTAGRHGYG 109 (211)
T ss_dssp HHHTCC----EECCTTCCCHH--HHHHHHHHHHHHTTCSEEEEECCCSCCTT
T ss_pred CCCCCC----EEECCCCHHHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 146842----23024410244--78999998740267736998537767631
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.94 E-value=0.44 Score=20.97 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998679887899999985689
Q 000713 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 657 ~~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
..+.+.||.||||||+.+.|.-.+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.91 E-value=0.28 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 992999986798878999999856898
Q 000713 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 655 ~G~~v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
+.-.+.++|+.|+|||||++.+.+...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 747999999999878999999844888
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.89 E-value=0.55 Score=20.27 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589986899999994
Q 000713 1266 KIGIVGRTGSGKTTLRGALF 1285 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLf 1285 (1335)
||.+||..|+|||||++.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~ 25 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFF 25 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989959899999997
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.88 E-value=0.25 Score=22.83 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7999999999998149979998
Q 000713 755 GGQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 755 GGQkqRi~LARAly~~~~i~lL 776 (1335)
+||...-.+.+..|.+++.+++
T Consensus 60 ~g~~~~~~~~~~~~~~~~~~il 81 (170)
T d1i2ma_ 60 AGQEKFGGLRDGYYIQAQCAII 81 (170)
T ss_dssp TTHHHHSSCGGGGTTTCCEEEE
T ss_pred CCCCCCCEECCHHCCCCCCHHH
T ss_conf 4653300002001133211000
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.72 E-value=0.44 Score=21.02 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=8.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999958998689999999
Q 000713 1266 KIGIVGRTGSGKTTLRGAL 1284 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aL 1284 (1335)
||.+||..|+|||||++.+
T Consensus 6 KivlvG~~~vGKTsli~~~ 24 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999998995889999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.71 E-value=0.32 Score=21.96 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=32.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8509929999867988789999998568989983799929399991577
Q 000713 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA 700 (1335)
Q Consensus 652 ~i~~G~~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~p 700 (1335)
-++.|.++.+.|+.|||||++...+........| .+.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCC
T ss_conf 8666336999648874889999999998754898------899998976
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=83.43 E-value=0.46 Score=20.83 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=12.2
Q ss_pred CCCEEEEECCCCCC--CCCCCEEEEEE
Q ss_conf 99789998168886--12379699994
Q 000713 801 SGKVVLLVTHQVDF--LPAFDSVLLMS 825 (1335)
Q Consensus 801 ~~kTvilvTH~~~~--l~~~D~iivl~ 825 (1335)
.....+++-+.... .+.++..+.+.
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~~~~~ 147 (223)
T d1q3ta_ 121 QQGGIVMDGRDIGTVVLPQAELKIFLV 147 (223)
T ss_dssp TTSCEEEECSSCSSSSGGGCSEEEEEE
T ss_pred HCCCCEEEECCCCCCCCCCCCHHHHCC
T ss_conf 558803531111110134301122012
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.39 E-value=0.39 Score=21.40 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=11.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9828888889998999999999
Q 000713 775 LLDDPFSAVDAHTASSLFNDYV 796 (1335)
Q Consensus 775 lLDdp~salD~~~~~~i~~~~i 796 (1335)
+.=|+..++.++|. .+++.+-
T Consensus 100 lVvda~~Gv~~~T~-~~w~~a~ 120 (276)
T d2bv3a2 100 VVFDSSQGVEPQSE-TVWRQAE 120 (276)
T ss_dssp EEEETTTSSCHHHH-HHHHHHH
T ss_pred EECCCCCCCCHHHH-HHHHHHH
T ss_conf 73225677446699-9999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.33 E-value=0.53 Score=20.39 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998679887899999985689
Q 000713 658 KVAICGEVGSGKSTLLAAILGEV 680 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~ 680 (1335)
.+.|+|.-|||||||++-++...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.29 E-value=0.44 Score=21.02 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999995899868999999940
Q 000713 1266 KIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1266 KVGIVGRTGSGKSTL~~aLfR 1286 (1335)
||.+||..|+|||||+..+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.22 E-value=0.44 Score=20.98 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=9.8
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9799982888888
Q 000713 771 ADIYLLDDPFSAV 783 (1335)
Q Consensus 771 ~~i~lLDdp~sal 783 (1335)
+.|+++||.=++-
T Consensus 116 ~~IIf~DEIdki~ 128 (309)
T d1ofha_ 116 NGIVFIDEIDKIC 128 (309)
T ss_dssp HCEEEEECGGGGS
T ss_pred CCEEEEHHHHHHH
T ss_conf 8568842464540
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.15 E-value=0.56 Score=20.23 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=8.2
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 49979998288888
Q 000713 769 QDADIYLLDDPFSA 782 (1335)
Q Consensus 769 ~~~~i~lLDdp~sa 782 (1335)
.+.+++++|-..+.
T Consensus 131 ~~~~liViDSi~al 144 (263)
T d1u94a1 131 GAVDVIVVDSVAAL 144 (263)
T ss_dssp TCCSEEEEECGGGC
T ss_pred CCCCEEEEECCCCC
T ss_conf 99989999886556
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.70 E-value=0.45 Score=20.94 Aligned_cols=22 Identities=50% Similarity=0.720 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999867988789999998568
Q 000713 658 KVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe 679 (1335)
-++|+|.+|+|||||..+++..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.68 E-value=0.52 Score=20.44 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=5.3
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9799982888888
Q 000713 771 ADIYLLDDPFSAV 783 (1335)
Q Consensus 771 ~~i~lLDdp~sal 783 (1335)
+++.++ |..+++
T Consensus 137 ~~~~vi-Ds~~~~ 148 (254)
T d1pzna2 137 VKLLIV-DSLTSH 148 (254)
T ss_dssp EEEEEE-ETSSTT
T ss_pred CEEEEE-CCHHHE
T ss_conf 426860-311210
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.59 E-value=0.47 Score=20.81 Aligned_cols=100 Identities=28% Similarity=0.385 Sum_probs=56.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHC
Q ss_conf 99986798878999999856898998379992939999157768888888984139999937899999981337888409
Q 000713 659 VAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELL 738 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g~iayv~Q~pwi~~~TireNIlfg~~~~~~~y~~vl~~c~L~~dl~~l 738 (1335)
+.|.||+|+|||-|++++..++.... -.+.|++-. +.. ..+...+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~------~~~~~~~~~---------~~~--------~~~~~~~~~---------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRG------YRVIYSSAD---------DFA--------QAMVEHLKK---------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTT------CCEEEEEHH---------HHH--------HHHHHHHHH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC------CCEEEECHH---------HHH--------HHHHHHHHC----------
T ss_conf 79988899839999999998744676------504884437---------879--------999999871----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHH-HCCCCEEEEECCCC
Q ss_conf 99998522688887797999999999998149979998288888-8999899999999999-73997899981688
Q 000713 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA-VDAHTASSLFNDYVME-ALSGKVVLLVTHQV 812 (1335)
Q Consensus 739 p~Gd~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~sa-lD~~~~~~i~~~~i~~-~l~~kTvilvTH~~ 812 (1335)
++ ..-.+..+.++|++++||.=.- -+......+|+ ++.. ...++.+|+.+...
T Consensus 86 -----------------~~---~~~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 86 -----------------GT---INEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp -----------------TC---HHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred -----------------CC---HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf -----------------66---2667898762130101126550586577889999-9998763166389954875
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.51 E-value=0.45 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=12.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 49979998288888899989999
Q 000713 769 QDADIYLLDDPFSAVDAHTASSL 791 (1335)
Q Consensus 769 ~~~~i~lLDdp~salD~~~~~~i 791 (1335)
.|.-|++. |...++-+++.+.+
T Consensus 91 ~D~avlvv-da~~Gv~~~t~~~~ 112 (267)
T d2dy1a2 91 ADAALVAV-SAEAGVQVGTERAW 112 (267)
T ss_dssp CSEEEEEE-ETTTCSCHHHHHHH
T ss_pred CCCEEEEE-ECCCCCCCHHHHHH
T ss_conf 67338984-23577421157887
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.39 E-value=0.54 Score=20.35 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.4
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99998568989983
Q 000713 672 LLAAILGEVPHTQG 685 (1335)
Q Consensus 672 Ll~~ilGe~~~~~G 685 (1335)
+....+..+.....
T Consensus 91 ~~~~~l~~i~~~d~ 104 (319)
T d1wxqa1 91 LGNKFLDDLRMASA 104 (319)
T ss_dssp ----CCCSSTTCSE
T ss_pred HHHHHHHHHCCCEE
T ss_conf 58999974305527
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.34 E-value=0.64 Score=19.81 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=7.9
Q ss_pred HHCCCCCEEEEECCCCCCCHHH
Q ss_conf 9814997999828888889998
Q 000713 766 ALYQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 766 Aly~~~~i~lLDdp~salD~~~ 787 (1335)
..|.+++.+++ .++.-|..+
T Consensus 76 ~~~~~a~~~il--v~d~t~~~S 95 (185)
T d2atxa1 76 LSYPMTDVFLI--CFSVVNPAS 95 (185)
T ss_dssp GGCTTCSEEEE--EEETTCHHH
T ss_pred HCCCCCCEEEE--CCCCCHHHH
T ss_conf 13442111211--124635788
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.27 E-value=0.55 Score=20.30 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 929999867988789999998-568989983
Q 000713 656 GQKVAICGEVGSGKSTLLAAI-LGEVPHTQG 685 (1335)
Q Consensus 656 G~~v~IvG~~GsGKStLl~~i-lGe~~~~~G 685 (1335)
--++.++|..|+|||||++-+ .++..|+-|
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 4779999899998899999895098278888
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.18 E-value=0.58 Score=20.11 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=3.2
Q ss_pred CCCCCHHHHH
Q ss_conf 8888999899
Q 000713 780 FSAVDAHTAS 789 (1335)
Q Consensus 780 ~salD~~~~~ 789 (1335)
++|.|...-+
T Consensus 194 T~A~Dt~ni~ 203 (221)
T d1azta2 194 TCAVDTENIR 203 (221)
T ss_dssp CCTTCHHHHH
T ss_pred CCEECCHHHH
T ss_conf 6225629999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.06 E-value=0.47 Score=20.80 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=15.5
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 82888888999899999999999739978999816888
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD 813 (1335)
Q Consensus 776 LDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~ 813 (1335)
+=|...++.+++.+|+.. + ..+..+-+|++-+..+
T Consensus 96 VVda~~G~~~QT~~~~~~-a--~~~~~~~iIv~iNK~D 130 (196)
T d1d2ea3 96 VVAANDGPMPQTREHLLL-A--RQIGVEHVVVYVNKAD 130 (196)
T ss_dssp EEETTTCSCHHHHHHHHH-H--HHTTCCCEEEEEECGG
T ss_pred EEECCCCCCHHHHHHHHH-H--HHHCCCCEEEEEECCC
T ss_conf 998688876348999999-9--9855884899985565
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.78 E-value=0.65 Score=19.78 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHC----CCCCEEEEECCCCCCC
Q ss_conf 9999981----4997999828888889
Q 000713 762 QLARALY----QDADIYLLDDPFSAVD 784 (1335)
Q Consensus 762 ~LARAly----~~~~i~lLDdp~salD 784 (1335)
.||+.+. ...++++|.-++.|=-
T Consensus 20 ~la~~l~~~~~~~g~ii~L~G~LGaGK 46 (158)
T d1htwa_ 20 KFAEILLKLHTEKAIMVYLNGDLGAGK 46 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCH
T ss_conf 999998751579982999966877658
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.76 E-value=0.3 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986798878999999856898
Q 000713 659 VAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
..+.||.|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.27 E-value=0.63 Score=19.86 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----EEEEEECC
Q ss_conf 9999867988789999998568989983799929----39999157
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----KTAYVSQT 699 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~G~v~v~g----~iayv~Q~ 699 (1335)
=+.++||+|||||-|.+.+.+++..- -+.+++ ..|||...
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEEECCEEECC
T ss_conf 47998999988999999999873898--898625511411111044
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=81.05 E-value=0.28 Score=22.38 Aligned_cols=38 Identities=26% Similarity=0.120 Sum_probs=14.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 97999828888889998999999999997399789998168
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811 (1335)
Q Consensus 771 ~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~ 811 (1335)
|.|++|=-|+.+=-..+...+-..+ ..+++.+.++|-+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~---~~~g~kV~lit~D 49 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY---KKKGFKVGLVGAD 49 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH---HHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHCCCCEEEEEEE
T ss_conf 9899998999999899999999999---9779936999720
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.67 E-value=0.35 Score=21.73 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986798878999999856898
Q 000713 659 VAICGEVGSGKSTLLAAILGEVP 681 (1335)
Q Consensus 659 v~IvG~~GsGKStLl~~ilGe~~ 681 (1335)
..+.||.|+||||+..+++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.52 E-value=0.64 Score=19.82 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=23.4
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 814997999828888889998999999999997399789998168886
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 767 ly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~ 814 (1335)
-..|.-+++.| ...++-+++.+|+. +...+.=|.+|++-+..+.
T Consensus 111 ~~aD~ailVvd-a~~G~~~Qt~e~~~---~~~~~gv~~iiv~vNK~D~ 154 (222)
T d1zunb3 111 STCDLAIILVD-ARYGVQTQTRRHSY---IASLLGIKHIVVAINKMDL 154 (222)
T ss_dssp TTCSEEEEEEE-TTTCSCHHHHHHHH---HHHHTTCCEEEEEEECTTT
T ss_pred CCCCEEEEEEC-CCCCCCCCHHHHHH---HHHHCCCCEEEEEEECCCC
T ss_conf 55766898720-45676633389999---9998399879999870014
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.09 E-value=0.65 Score=19.78 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999986798878999999856898998
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 658 ~v~IvG~~GsGKStLl~~ilGe~~~~~ 684 (1335)
.++|=|+.|+||||+++.+...+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g 33 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITP 33 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999988877889999999999873468
|